Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 244 of 349
Found at i:80658097 original size:42 final size:43
Alignment explanation
Indices: 80658041--80658166 Score: 146
Period size: 42 Copynumber: 3.0 Consensus size: 43
80658031 AGGATTTCCG
* *
80658041 ATATGTGATATCGTGTAAGACCATGTCTGGGACATTGGCATCC
1 ATATCTGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCC
* *
80658084 -TATCTGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCC
1 ATATCTGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCC
* * * * * * *
80658126 ATGTTTGATTACATGTAAGACCACGTTTGGGACGTTGGCAT
1 ATATCTGATTTCGTGTAAGACCATGTCTGGGACATTGGCAT
80658167 TGTATATGCT
Statistics
Matches: 69, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
42 38 0.55
43 31 0.45
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (43 bp):
ATATCTGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCC
Found at i:80658157 original size:43 final size:42
Alignment explanation
Indices: 80658054--80658166 Score: 122
Period size: 43 Copynumber: 2.7 Consensus size: 42
80658044 TGTGATATCG
* * * *
80658054 TGTAAGACCATGTCTGGGACATTGGCATCCTATCTGATTTCG
1 TGTAAGACCACGTCTGGGACAGTGGCATCCTATCTGATTACA
* *
80658096 TGTAAGACC-CTGTCTGGGACAGTGGCATCCATGTTTGATTACA
1 TGTAAGACCAC-GTCTGGGACAGTGGCATCC-TATCTGATTACA
*
80658139 TGTAAGACCACGTTTGGGAC-GTTGGCAT
1 TGTAAGACCACGTCTGGGACAG-TGGCAT
80658167 TGTATATGCT
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
42 28 0.47
43 31 0.52
44 1 0.02
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACAGTGGCATCCTATCTGATTACA
Found at i:80663413 original size:38 final size:40
Alignment explanation
Indices: 80663362--80663735 Score: 215
Period size: 38 Copynumber: 8.8 Consensus size: 40
80663352 GAATGAAAAA
80663362 AACGTGGTGCTAAGTGGATATACCACGGTTATA-TG-TGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATATTGATGT
*
80663400 AACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTT----ATATTG----ATGT
* * * *
80663448 AACGTGGTACAAAGTGGATATGCCACGGTTACATATATTGATTCATT
1 AACGTGGTGCTAAGTGGATATACCACGG-T---TATATTGA-T--GT
* **
80663495 AACGTGGTGCTAAGTGGATATAGCACGGTTA-A-ACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATATTGATGT
* * * * *
80663533 AACGTGGTGTTAAGTGGATATGCCGCGATTACATATATTGATTCATT
1 AACGTGGTGCTAAGTGGATATACCACG-GT---TATATTGA-T--GT
** **
80663580 AATATGGTGCTAAGTGGATATACCACGGTTA-A-ACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATATTGATGT
* * *
80663618 AACGTGGTGCTAAGTGCATATGCCACGGTTACATATATTGATTCATT
1 AACGTGGTGCTAAGTGGATATACCACGG-T---TATATTGA-T--GT
* **
80663665 AACGTGGTGCTAAGTGGATATTCCACGGTTA-A-ACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATATTGATGT
*
80663703 AACGTGGTGCTAAGTGGATATGCCACGGTTATA
1 AACGTGGTGCTAAGTGGATATACCACGGTTATA
80663736 CATGTTAATT
Statistics
Matches: 257, Mismatches: 43, Indels: 71
0.69 0.12 0.19
Matches are distributed among these distances:
38 109 0.42
39 3 0.01
40 3 0.01
41 3 0.01
42 10 0.04
43 10 0.04
44 3 0.01
45 3 0.01
46 3 0.01
47 75 0.29
48 33 0.13
49 1 0.00
52 1 0.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (40 bp):
AACGTGGTGCTAAGTGGATATACCACGGTTATATTGATGT
Found at i:80663468 original size:48 final size:48
Alignment explanation
Indices: 80663397--80663700 Score: 258
Period size: 47 Copynumber: 6.8 Consensus size: 48
80663387 CGGTTATATG
*
80663397 TGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACA
1 TGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTGATACA
* * * * *
80663445 TGTAACGTGGTACAAAGTGGATATGCCACGGTTACATATATTGATTCA
1 TGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTGATACA
*
80663493 T-TAACGTGGTGCTAAGTGGATATAGCACGG-T-----TA---A-ACA
1 TGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTGATACA
* * * * * *
80663530 TGTAACGTGGTGTTAAGTGGATATGCCGCGATTACATATATTGATTCA
1 TGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTGATACA
**
80663578 T-TAATATGGTGCTAAGTGGATATACCACGG-T-----TA---A-ACA
1 TGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTGATACA
* * * *
80663615 TGTAACGTGGTGCTAAGTGCATATGCCACGGTTACATATATTGATTCA
1 TGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTGATACA
* *
80663663 T-TAACGTGGTGCTAAGTGGATATTCCACGGTTAAACAT
1 TGTAACGTGGTGCTAAGTGGATATACCACGGTTACACAT
80663701 GTAACGTGGT
Statistics
Matches: 201, Mismatches: 33, Indels: 45
0.72 0.12 0.16
Matches are distributed among these distances:
37 6 0.03
38 51 0.25
39 2 0.01
41 4 0.02
44 4 0.02
46 2 0.01
47 83 0.41
48 49 0.24
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (48 bp):
TGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTGATACA
Found at i:80663548 original size:85 final size:85
Alignment explanation
Indices: 80663442--80663733 Score: 494
Period size: 85 Copynumber: 3.4 Consensus size: 85
80663432 ACATATTGAT
* *
80663442 ACATGTAACGTGGTACAAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
*
80663507 AGTGGATATAGCACGGTTAA
66 AGTGGATATACCACGGTTAA
* * * **
80663527 ACATGTAACGTGGTGTTAAGTGGATATGCCGCGATTACATATATTGATTCATTAATATGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
80663592 AGTGGATATACCACGGTTAA
66 AGTGGATATACCACGGTTAA
*
80663612 ACATGTAACGTGGTGCTAAGTGCATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
*
80663677 AGTGGATATTCCACGGTTAA
66 AGTGGATATACCACGGTTAA
80663697 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
80663734 TACATGTTAA
Statistics
Matches: 191, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
85 191 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (85 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
AGTGGATATACCACGGTTAA
Found at i:80666913 original size:40 final size:40
Alignment explanation
Indices: 80666806--80667021 Score: 239
Period size: 39 Copynumber: 5.5 Consensus size: 40
80666796 CGGATGATAA
* * *
80666806 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-T
* *
80666846 CCGGGCTAA-ACCCGAAGGCAATTGTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAT
*
80666885 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTATTGA-A-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATT-ATAT
* *
80666924 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAT
* *
80666964 CCGGG-TCAAGTCCCGAAGGCATTTGAGCAAG-TAGTTATAT
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTA-TTATAT
* *
80667004 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
80667022 TACTTGGGTT
Statistics
Matches: 152, Mismatches: 16, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
38 1 0.01
39 82 0.54
40 68 0.45
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAT
Found at i:80666939 original size:79 final size:78
Alignment explanation
Indices: 80666802--80666986 Score: 248
Period size: 79 Copynumber: 2.3 Consensus size: 78
80666792 TATTCGGATG
* *
80666802 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAACCCGAAGGCAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTGACTAA-TCCGGGCTAAACCCGAAGGCAA
*
80666867 TTGTGCGAGTTATT
65 TTGTGCGAGTTACT
* * * *
80666881 ATATCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTATTGAA-CCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTGACT-AATCCGGGCTAA-ACCCGAAGGCA
*
80666945 TTTGTGCGAGTTACT
64 ATTGTGCGAGTTACT
80666960 ATAACCGGG-TCAAGTCCCGAAGGCATT
1 ATAACCGGGCT-AAGTCCCGAAGGCATT
80666987 TGAGCAAGTA
Statistics
Matches: 94, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
78 10 0.11
79 82 0.87
80 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (78 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTGACTAATCCGGGCTAAACCCGAAGGCAAT
TGTGCGAGTTACT
Found at i:80667010 original size:79 final size:78
Alignment explanation
Indices: 80666802--80667021 Score: 243
Period size: 79 Copynumber: 2.8 Consensus size: 78
80666792 TATTCGGATG
* * *
80666802 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT-TCCGGGCTAAACCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGC-AGT-AGTTATATCCGGGCTAATCCCGAAGGCA
*
80666866 ATTGTGCGAGTTATT
64 ATTGTGCGAGTTACT
* * *
80666881 ATATCCGGGCTAAGTCCCGAAGGCATTGGTGC-G-AGTTATTGAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAGTAGTTA-T-ATCCGGGCTAA-TCCCGAAGGC
*
80666944 ATTTGTGCGAGTTACT
63 AATTGTGCGAGTTACT
* *
80666960 ATAACCGGG-TCAAGTCCCGAAGGCATTTGAGCAAGTAGTTATATCC-GGCTAAATTCCGAAGG
1 ATAACCGGGCT-AAGTCCCGAAGGCATTTGTGC-AGTAGTTATATCCGGGCT-AATCCCGAAGG
80667022 TACTTGGGTT
Statistics
Matches: 119, Mismatches: 13, Indels: 18
0.79 0.09 0.12
Matches are distributed among these distances:
75 3 0.03
76 1 0.01
77 1 0.01
78 10 0.08
79 92 0.77
80 5 0.04
81 2 0.02
82 5 0.04
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (78 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAGTAGTTATATCCGGGCTAATCCCGAAGGCAAT
TGTGCGAGTTACT
Found at i:80669805 original size:42 final size:42
Alignment explanation
Indices: 80669757--80669876 Score: 123
Period size: 43 Copynumber: 2.8 Consensus size: 42
80669747 TATGTGATAT
* *
80669757 CATGTAAGACCATATCTGGGACATTGGCATCGTATCTGATTT
1 CATGTAAGACCATGTCTGGGACATTGGCATCGTATCTGATTA
** * * * * *
80669799 TGTGTAAGACCTTGTCTGGGATAGTGGCATCGATGTTTGATTA
1 CATGTAAGACCATGTCTGGGACATTGGCATCG-TATCTGATTA
* * *
80669842 CATGTAAGACCACGTCTGGGACGTTGGCATTGTAT
1 CATGTAAGACCATGTCTGGGACATTGGCATCGTAT
80669877 ATGCTTTCCG
Statistics
Matches: 59, Mismatches: 18, Indels: 2
0.75 0.23 0.03
Matches are distributed among these distances:
42 28 0.47
43 31 0.53
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (42 bp):
CATGTAAGACCATGTCTGGGACATTGGCATCGTATCTGATTA
Found at i:80678995 original size:27 final size:26
Alignment explanation
Indices: 80678951--80679002 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
80678941 CTCGCTGCAA
*
80678951 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
80678978 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
80679003 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:80679081 original size:27 final size:26
Alignment explanation
Indices: 80679043--80679102 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
80679033 ACATATATAT
* *
80679043 ATATTTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
80679069 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
80679096 ATATCTG
1 ATATCTG
80679103 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:80693904 original size:27 final size:27
Alignment explanation
Indices: 80693874--80694138 Score: 334
Period size: 27 Copynumber: 9.8 Consensus size: 27
80693864 ATTACCAAAG
* * *
80693874 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
80693901 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
80693928 TACCC-CTAATTTACAAAATTACCATTT
1 TACCCTC-GATTTATAGAATTACCATTT
*
80693955 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
80693982 TACCCTTGATTTATAGAATTATCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
80694009 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
80694036 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
80694063 TACCCTCGACTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
80694090 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
80694117 TACCCTCAATTTACAAAATTAC
1 TACCCTCGATTTATAGAATTAC
80694139 TGAAATACCC
Statistics
Matches: 213, Mismatches: 23, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
26 1 0.00
27 211 0.99
28 1 0.00
ACGTcount: A:0.31, C:0.23, G:0.06, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:80694139 original size:81 final size:81
Alignment explanation
Indices: 80693874--80694138 Score: 379
Period size: 81 Copynumber: 3.3 Consensus size: 81
80693864 ATTACCAAAG
* *
80693874 TACCCTCGATTTACAAAATTACCGTTTTACCCTCAATTTATAGAATTACCGTTTTACCC-CTAAT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTC-AAT
*
80693938 TTACAAAATTACCATTT
65 TTACAGAATTACCATTT
* * * * *
80693955 TACCCTCGATTTATAAAATTACCATTTTACCCTTGATTTATAGAATTATCATTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAATT
80694020 TACAGAATTACCATTT
66 TACAGAATTACCATTT
* * * *
80694036 TACCCTCGATTTATAGAATTACTATTTTACCCTCGACTTATAGAATTACCGTTTTACCCTCAATT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAATT
* *
80694101 TATAGAATTACCGTTT
66 TACAGAATTACCATTT
*
80694117 TACCCTCAATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTAC
80694139 TGAAATACCC
Statistics
Matches: 163, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
81 162 0.99
82 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.06, T:0.40
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCAATT
TACAGAATTACCATTT
Found at i:80694147 original size:27 final size:27
Alignment explanation
Indices: 80694090--80694202 Score: 84
Period size: 27 Copynumber: 4.2 Consensus size: 27
80694080 ATTACCGTTT
* * ***
80694090 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCAATTTACAAAATTACCGAAA
*
80694117 TACCCTCAATTTACAAAATTACTGAAA
1 TACCCTCAATTTACAAAATTACCGAAA
*** *
80694144 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCAATTTACAAAATTACCGAAA
* * * *
80694171 TACCTTCAA-TCAGTAAAATTACCAAAA
1 TACCCTCAATTTA-CAAAATTACCGAAA
80694198 TACCC
1 TACCC
80694203 CTAGTTTGTA
Statistics
Matches: 67, Mismatches: 18, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
26 2 0.03
27 65 0.97
ACGTcount: A:0.40, C:0.24, G:0.05, T:0.31
Consensus pattern (27 bp):
TACCCTCAATTTACAAAATTACCGAAA
Found at i:80694213 original size:27 final size:27
Alignment explanation
Indices: 80694183--80694299 Score: 180
Period size: 27 Copynumber: 4.3 Consensus size: 27
80694173 CCTTCAATCA
*
80694183 GTAAAATTACCAAAATACCCCTAGTTT
1 GTAAAATTACCAAAATACCCCTGGTTT
*
80694210 GTAAAATTACTAAAATACCCCTGGTTT
1 GTAAAATTACCAAAATACCCCTGGTTT
*
80694237 GTAAAATTACCAAAATACCCCTGGCTT
1 GTAAAATTACCAAAATACCCCTGGTTT
* *
80694264 GTAAAATTACCAAAATACTCCTGATTT
1 GTAAAATTACCAAAATACCCCTGGTTT
*
80694291 GTGAAATTA
1 GTAAAATTA
80694300 TCGAAATGCT
Statistics
Matches: 82, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 82 1.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
GTAAAATTACCAAAATACCCCTGGTTT
Found at i:80694268 original size:81 final size:81
Alignment explanation
Indices: 80694131--80694299 Score: 207
Period size: 81 Copynumber: 2.1 Consensus size: 81
80694121 CTCAATTTAC
* * *
80694131 AAAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAATACCTTCAATCAGTAAAATTACCAA
1 AAAATTACTAAAATACCCCTGGTTTACAAAATTACCAAAATACCCTCAATCAGTAAAATTACCAA
80694196 AATACCCCT-AGTTTGT
66 AATACCCCTGA-TTTGT
** *** *
80694212 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC-CTGGCTTGTAAAATTACCA
1 AAAATTACTAAAATACCCCTGGTTTACAAAATTACCAAAATACCCTCAATC-AGTAAAATTACCA
*
80694276 AAATACTCCTGATTTGT
65 AAATACCCCTGATTTGT
*
80694293 GAAATTA
1 AAAATTA
80694300 TCGAAATGCT
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
80 2 0.03
81 72 0.96
82 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (81 bp):
AAAATTACTAAAATACCCCTGGTTTACAAAATTACCAAAATACCCTCAATCAGTAAAATTACCAA
AATACCCCTGATTTGT
Found at i:80694306 original size:27 final size:27
Alignment explanation
Indices: 80694183--80694338 Score: 165
Period size: 27 Copynumber: 5.8 Consensus size: 27
80694173 CCTTCAATCA
80694183 GTAAAATTACCAAAATACCCCT-AGTTT
1 GTAAAATTACCAAAATACCCCTGA-TTT
* *
80694210 GTAAAATTACTAAAATACCCCTGGTTT
1 GTAAAATTACCAAAATACCCCTGATTT
**
80694237 GTAAAATTACCAAAATACCCCTGGCTT
1 GTAAAATTACCAAAATACCCCTGATTT
*
80694264 GTAAAATTACCAAAATACTCCTGATTT
1 GTAAAATTACCAAAATACCCCTGATTT
* * * * *
80694291 GTGAAATTATCGAAAT-GCTCTCGATTT
1 GTAAAATTACCAAAATACCCCT-GATTT
* *
80694318 GTAAAA-TATCGAAATACCCCT
1 GTAAAATTACCAAAATACCCCT
80694339 ATAGGGTAGA
Statistics
Matches: 110, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
26 11 0.10
27 99 0.90
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.31
Consensus pattern (27 bp):
GTAAAATTACCAAAATACCCCTGATTT
Found at i:80694319 original size:81 final size:80
Alignment explanation
Indices: 80694183--80694338 Score: 183
Period size: 81 Copynumber: 1.9 Consensus size: 80
80694173 CCTTCAATCA
*
80694183 GTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTACC
1 GTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCCTGATTTGTAAAA-TACC
80694248 AAAATACCCCTGGCTT
65 AAAATACCCCTGGCTT
* * * * *
80694264 GTAAAATTACCAAAATACTCCT-GATTTGTGAAATTA-TCGAAAT-GCTCTCGATTTGTAAAATA
1 GTAAAATTACCAAAATACCCCTAG-TTTGTAAAATTACT-AAAATACCCCT-GATTTGTAAAATA
* *
80694326 TCGAAATACCCCT
63 CCAAAATACCCCT
80694339 ATAGGGTAGA
Statistics
Matches: 64, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
80 18 0.28
81 46 0.72
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.31
Consensus pattern (80 bp):
GTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCCTGATTTGTAAAATACCA
AAATACCCCTGGCTT
Found at i:80694388 original size:54 final size:54
Alignment explanation
Indices: 80694321--80694461 Score: 201
Period size: 54 Copynumber: 2.6 Consensus size: 54
80694311 TCGATTTGTA
* * * *
80694321 AAATATCGAAATACCCCTATAGGGTAGAATTACTGATATAACTCTGTAGGGTAG
1 AAATATCGAAATACCCCTGTAGGGTAGAATTACTAAAATAACCCTGTAGGGTAG
* * *
80694375 AATTATCGAAATACCCTTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAG
1 AAATATCGAAATACCCCTGTAGGGTAGAATTACTAAAATAACCCTGTAGGGTAG
* *
80694429 AAATACCGAAATAACCCTGTAGGGTAGAATTAC
1 AAATATCGAAATACCCCTGTAGGGTAGAATTAC
80694462 CGAGATTCTC
Statistics
Matches: 76, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 76 1.00
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.26
Consensus pattern (54 bp):
AAATATCGAAATACCCCTGTAGGGTAGAATTACTAAAATAACCCTGTAGGGTAG
Found at i:80694428 original size:81 final size:81
Alignment explanation
Indices: 80694329--80694488 Score: 221
Period size: 81 Copynumber: 2.0 Consensus size: 81
80694319 TAAAATATCG
* * * * *
80694329 AAATACCCCTATAGGGTAGAATTACTGATATAACTCTGTAGGGTAGAATTATCGAAATACCCTTG
1 AAATACCCCTATAGGGTAGAAATACCGAAATAACCCTGTAGGGTAGAATTACCGAAATACCCTTG
*
80694394 TAGGGTAGAATTACTA
66 TAGGGTAAAATTACTA
* * * *
80694410 AAATACCCCTGTAGGGTAGAAATACCGAAATAACCCTGTAGGGTAGAATTACCGAGATTCTCTTG
1 AAATACCCCTATAGGGTAGAAATACCGAAATAACCCTGTAGGGTAGAATTACCGAAATACCCTTG
*
80694475 TGGGGTAAAATTAC
66 TAGGGTAAAATTAC
80694489 CATTTTTCCC
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 68 1.00
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.28
Consensus pattern (81 bp):
AAATACCCCTATAGGGTAGAAATACCGAAATAACCCTGTAGGGTAGAATTACCGAAATACCCTTG
TAGGGTAAAATTACTA
Found at i:80694462 original size:27 final size:27
Alignment explanation
Indices: 80694327--80694464 Score: 170
Period size: 27 Copynumber: 5.1 Consensus size: 27
80694317 TGTAAAATAT
* *
80694327 CGAAATACCCCTATAGGGTAGAATTAC
1 CGAAATAACCCTGTAGGGTAGAATTAC
* * * *
80694354 TGATATAACTCTGTAGGGTAGAATTAT
1 CGAAATAACCCTGTAGGGTAGAATTAC
80694381 CGAAAT-ACCCTTGTAGGGTAGAATTAC
1 CGAAATAACCC-TGTAGGGTAGAATTAC
** * *
80694408 TAAAATACCCCTGTAGGGTAGAAATAC
1 CGAAATAACCCTGTAGGGTAGAATTAC
80694435 CGAAATAACCCTGTAGGGTAGAATTAC
1 CGAAATAACCCTGTAGGGTAGAATTAC
80694462 CGA
1 CGA
80694465 GATTCTCTTG
Statistics
Matches: 91, Mismatches: 18, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
26 3 0.03
27 85 0.93
28 3 0.03
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.25
Consensus pattern (27 bp):
CGAAATAACCCTGTAGGGTAGAATTAC
Found at i:80694730 original size:25 final size:25
Alignment explanation
Indices: 80694692--80694761 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
80694682 AGGAAGTGCT
*
80694692 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
80694717 AAAAGGGCTTTGCCCTAATTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
80694742 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
80694762 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:80713344 original size:29 final size:26
Alignment explanation
Indices: 80713308--80713360 Score: 79
Period size: 29 Copynumber: 1.9 Consensus size: 26
80713298 TACACTTTAT
80713308 TTAAATAAGTCCTTATAGTATTTTTATAG
1 TTAAATAAGTCC-TATA--ATTTTTATAG
80713337 TTAAATAAGTCCTATAATTTTTAT
1 TTAAATAAGTCCTATAATTTTTAT
80713361 TCATGAAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 8 0.33
28 4 0.17
29 12 0.50
ACGTcount: A:0.36, C:0.08, G:0.08, T:0.49
Consensus pattern (26 bp):
TTAAATAAGTCCTATAATTTTTATAG
Found at i:80714250 original size:7 final size:8
Alignment explanation
Indices: 80714219--80714247 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
80714209 TTGATAAAAT
80714219 ATTTTTAA
1 ATTTTTAA
80714227 ATTTTTAA
1 ATTTTTAA
80714235 ATTTTTAA
1 ATTTTTAA
80714243 ATTTT
1 ATTTT
80714248 AAAAGCAGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (8 bp):
ATTTTTAA
Found at i:80714902 original size:38 final size:38
Alignment explanation
Indices: 80714822--80714910 Score: 101
Period size: 38 Copynumber: 2.4 Consensus size: 38
80714812 AAAAATTATA
* * * *
80714822 TTTAATACAATAAAACATTTATTACATTTATTTGTGTT
1 TTTAATATAATAAAACATATATTACATTTATTAGTGTG
*
80714860 TTTAATATAATAAAACATATATTATATTTA-TAGTAGTG
1 TTTAATATAATAAAACATATATTACATTTATTAGT-GTG
*
80714898 TTTAAAAT-ATAAA
1 TTTAATATAATAAA
80714911 TACTTTTTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
37 8 0.18
38 36 0.82
ACGTcount: A:0.44, C:0.04, G:0.06, T:0.46
Consensus pattern (38 bp):
TTTAATATAATAAAACATATATTACATTTATTAGTGTG
Found at i:80718711 original size:145 final size:147
Alignment explanation
Indices: 80718448--80718746 Score: 469
Period size: 145 Copynumber: 2.0 Consensus size: 147
80718438 AATGCCCCGA
*
80718448 CAACCTCTATGAGATGTATGACGACTATTTTTACTGACATGCTAGAAGAAGGCTTGGATGTATTT
1 CAACCTTTATGAGATGTATGACGACTATTTTTACTGACATGCTAGAAGAAGGCTTGGATGTATTT
* *
80718513 ATGGATGATTTCTCAGTATAAGGAGATTCATTTCAAGAATTTTGGAAAATCTT-AAAAAGTCTTG
66 ATGGATGATTTCTCAGTATAAGAAGATTCATTTCAAGAATTTAGGAAAATCTTAAAAAAGTCTTG
*
80718577 CAGAGATGCG-AGAAAC
131 CAGAGATGAGAAGAAAC
* * *
80718593 CAACCTTTATGAGATGTATGACGGCTATTTTTGCTGACATGTTAGAAGAAGGCTTGGATGTATTT
1 CAACCTTTATGAGATGTATGACGACTATTTTTACTGACATGCTAGAAGAAGGCTTGGATGTATTT
* * *
80718658 ATGGATGATTTTTCAGTATATGAAG-TTCATTTCAAGAATGTTAGGACAATCTTAAAAAAGTCTT
66 ATGGATGATTTCTCAGTATAAGAAGATTCATTTCAAGAAT-TTAGGAAAATCTTAAAAAAGTCTT
*
80718722 GTAGAGATGAGAAGAAAC
130 GCAGAGATGAGAAGAAAC
80718740 CAACCTT
1 CAACCTT
80718747 GTATTAAACT
Statistics
Matches: 140, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
144 14 0.10
145 94 0.67
146 19 0.14
147 13 0.09
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.33
Consensus pattern (147 bp):
CAACCTTTATGAGATGTATGACGACTATTTTTACTGACATGCTAGAAGAAGGCTTGGATGTATTT
ATGGATGATTTCTCAGTATAAGAAGATTCATTTCAAGAATTTAGGAAAATCTTAAAAAAGTCTTG
CAGAGATGAGAAGAAAC
Found at i:80723112 original size:40 final size:40
Alignment explanation
Indices: 80723068--80723249 Score: 276
Period size: 40 Copynumber: 4.6 Consensus size: 40
80723058 GCCACTAGCT
* * *
80723068 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
80723108 CAAATGCCTTCGGGACTTAGCCCGG-TATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
* * *
80723147 CAAATGCCTTCGGGACTTAGCCCAGACATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
* * *
80723187 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
80723227 CAAATGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
80723250 AGAATTAGCC
Statistics
Matches: 131, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 36 0.27
40 95 0.73
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
Found at i:80723166 original size:79 final size:80
Alignment explanation
Indices: 80723068--80723252 Score: 282
Period size: 79 Copynumber: 2.3 Consensus size: 80
80723058 GCCACTAGCT
* ** * * *
80723068 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCAGACATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
80723133 -TATAATAACTCGCA
66 ATATAATAACTCGCA
*
80723147 CAAATGCCTTCGGGACTTAGCCCAGACATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCAGACATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
* *
80723212 ATATAGTAGCTCGCA
66 ATATAATAACTCGCA
80723227 CAAATGCCTTCGGGACTTAGCCCAGA
1 CAAATGCCTTCGGGACTTAGCCCAGA
80723253 ATTAGCCACT
Statistics
Matches: 96, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
79 58 0.60
80 38 0.40
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCAGACATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
ATATAATAACTCGCA
Found at i:80723271 original size:40 final size:39
Alignment explanation
Indices: 80723068--80723291 Score: 233
Period size: 40 Copynumber: 5.6 Consensus size: 39
80723058 GCCACTAGCT
** *
80723068 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGAATATAG-AACTCGCA
* *
80723108 CAAATGCCTTCGGGACTTAGCCCG-GTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAATAT-AGAACTCGCA
80723147 CAAATGCCTTCGGGACTTAGCCCAGACATAATAG--CTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GA-AT-ATAGAACTCGCA
* * *
80723187 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAATATAG-AACTCGCA
* * *
80723227 CAAATGCCTTCGGGACTTAGCCCAGAAT-TAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCC-GAATATAG-AACTCGCA
80723267 CAAATG-CTCTCGGGACTTAGCCCGA
1 CAAATGCCT-TCGGGACTTAGCCCGA
80723292 TTATCATCCG
Statistics
Matches: 160, Mismatches: 14, Indels: 21
0.82 0.07 0.11
Matches are distributed among these distances:
37 4 0.03
38 2 0.01
39 38 0.24
40 109 0.68
41 3 0.02
42 2 0.01
43 2 0.01
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGAATATAGAACTCGCA
Found at i:80723280 original size:80 final size:78
Alignment explanation
Indices: 80723068--80723290 Score: 274
Period size: 80 Copynumber: 2.8 Consensus size: 78
80723058 GCCACTAGCT
** *
80723068 CAAATGCCTTCGGGACTTAGCCC-GGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCAGAATATAG--ACTAGCACAAATGCCTTCGGGACTTAGCCCG
80723132 GTATAATAACTCGCA
64 GTATAATAACTCGCA
* *
80723147 CAAATGCCTTCGGGACTTAGCCCAGACATAATAG-CTCGCACAAACGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCAGA-AT-ATAGACTAGCACAAATGCCTTCGGGACTTAGCCCG
* *
80723211 GATATAGTAGCTCGCA
64 G-TATAATAACTCGCA
*
80723227 CAAATGCCTTCGGGACTTAGCCCAGAAT-TAGCCACTAGCTCAAATG-CTCTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCCAGAATATAG--ACTAGCACAAATGCCT-TCGGGACTTAGCCC
80723290 G
63 G
80723291 ATTATCATCC
Statistics
Matches: 127, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
77 3 0.02
79 56 0.44
80 63 0.50
81 1 0.01
82 4 0.03
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.22
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCAGAATATAGACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
ATAATAACTCGCA
Found at i:80731235 original size:39 final size:38
Alignment explanation
Indices: 80731191--80731430 Score: 278
Period size: 38 Copynumber: 6.2 Consensus size: 38
80731181 CCTTCGGAGT
*
80731191 TTAG-CCGGATATAGCCACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAG--ACTAGCACAAATGCCTTCGGGAC
* *
80731230 TTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAG--ACTAGCACAAATGCCTTCGGGAC
*
80731270 TTAGCCCGGATATA-ACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGACTAGCACAAATGCCTTCGGGAC
*
80731307 TTAGCCCGGAATAATAG-CTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGG-AT-ATAGACTAGCACAAATGCCTTCGGGAC
80731346 TTAGCCCGGATATAGTACT-GCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAG-ACTAGCACAAATGCCTTCGGGAC
* *
80731384 TTAGCCCGAAT-TAGCCACTAGCTCAAATG-CTCTC-GGAC
1 TTAGCCCGGATATAG--ACTAGCACAAATGCCT-TCGGGAC
80731422 TTAGCCCGG
1 TTAGCCCGG
80731431 TTATCATCCG
Statistics
Matches: 181, Mismatches: 11, Indels: 19
0.86 0.05 0.09
Matches are distributed among these distances:
37 38 0.21
38 50 0.28
39 50 0.28
40 43 0.24
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (38 bp):
TTAGCCCGGATATAGACTAGCACAAATGCCTTCGGGAC
Found at i:80731351 original size:76 final size:77
Alignment explanation
Indices: 80731191--80731391 Score: 291
Period size: 77 Copynumber: 2.6 Consensus size: 77
80731181 CCTTCGGAGT
* * * *
80731191 TTAG-CCGGATATAGCCACTAGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCAC
1 TTAGCCCGGATATAG--ACT-GCACAAATGCCTTCGGGACTTAGCCCGGTAATAATAACTCGCAC
80731255 AAATGCCTTCGGGAC
63 AAATGCCTTCGGGAC
*
80731270 TTAGCCCGGATATA-ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-AATAATAGCTCGCACAA
1 TTAGCCCGGATATAGACT-GCACAAATGCCTTCGGGACTTAGCCCGGTAATAATAACTCGCACAA
80731333 ATGCCTTCGGGAC
65 ATGCCTTCGGGAC
80731346 TTAGCCCGGATATAGTACTGCACAAATGCCTTCGGGACTTAGCCCG
1 TTAGCCCGGATATAG-ACTGCACAAATGCCTTCGGGACTTAGCCCG
80731392 AATTAGCCAC
Statistics
Matches: 113, Mismatches: 6, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
76 40 0.35
77 57 0.50
78 3 0.03
79 4 0.04
80 9 0.08
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (77 bp):
TTAGCCCGGATATAGACTGCACAAATGCCTTCGGGACTTAGCCCGGTAATAATAACTCGCACAAA
TGCCTTCGGGAC
Found at i:80731422 original size:76 final size:76
Alignment explanation
Indices: 80731191--80731430 Score: 278
Period size: 77 Copynumber: 3.1 Consensus size: 76
80731181 CCTTCGGAGT
* ** *
80731191 TTAG-CCGGATATAGCCACTAGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCAC
1 TTAGCCCGGATATAG--ACTAGCACAAATGCCTTCGGGACTTAGCCCGAATATAG--ACTAGCAC
80731255 AAATGCCTTCGGGAC
62 AAATGCCTTCGGGAC
* *
80731270 TTAGCCCGGATATA-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATAATAG-CTCGCACAA
1 TTAGCCCGGATATAGACTAGCACAAATGCCTTCGGGACTTAGCCC-GAAT-ATAGACTAGCACAA
80731333 ATGCCTTCGGGAC
64 ATGCCTTCGGGAC
*
80731346 TTAGCCCGGATATAGTACT-GCACAAATGCCTTCGGGACTTAGCCCGAAT-TAGCCACTAGCTCA
1 TTAGCCCGGATATAG-ACTAGCACAAATGCCTTCGGGACTTAGCCCGAATATAG--ACTAGCACA
80731409 AATG-CTCTC-GGAC
63 AATGCCT-TCGGGAC
80731422 TTAGCCCGG
1 TTAGCCCGG
80731431 TTATCATCCG
Statistics
Matches: 145, Mismatches: 7, Indels: 21
0.84 0.04 0.12
Matches are distributed among these distances:
74 3 0.02
76 54 0.37
77 66 0.46
78 5 0.03
79 8 0.06
80 9 0.06
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (76 bp):
TTAGCCCGGATATAGACTAGCACAAATGCCTTCGGGACTTAGCCCGAATATAGACTAGCACAAAT
GCCTTCGGGAC
Found at i:80773047 original size:28 final size:28
Alignment explanation
Indices: 80772988--80773192 Score: 281
Period size: 28 Copynumber: 7.4 Consensus size: 28
80772978 ATAATAAGTC
*
80772988 CGCACACTCAGTGCTA-ATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
80773014 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
80773042 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
*
80773070 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
80773098 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
80773126 CGCACACTTAGTGCTACATAGTC-AATT
1 CGCACACTTAGTGCTACATAATCAAACT
* * * *
80773153 CGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAA-TCAAACT
80773182 CGCACACTTAG
1 CGCACACTTAG
80773193 CACCAATCTC
Statistics
Matches: 163, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
26 15 0.09
27 27 0.17
28 108 0.66
29 13 0.08
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:80781434 original size:30 final size:29
Alignment explanation
Indices: 80781400--80781542 Score: 164
Period size: 29 Copynumber: 4.8 Consensus size: 29
80781390 CAACTGCGGC
* *
80781400 CACACGTTAGTGCTATATAATCAAAACTCG
1 CACAC-TTAGTGCTACATAGTCAAAACTCG
* * * *
80781430 CACACTAATAGTGCCACATTAAT-TAAGCTCG
1 CACACT--TAGTGCTACA-TAGTCAAAACTCG
80781461 CACACTTAGTGCTACATAGTCAAAACTCCG
1 CACACTTAGTGCTACATAGTCAAAACT-CG
80781491 CACACTTAGTGCTACATAGGTC-AAACTCG
1 CACACTTAGTGCTACATA-GTCAAAACTCG
80781520 CACACTTAGTGCTACATAGTCAA
1 CACACTTAGTGCTACATAGTCAA
80781543 TTCGCACCAC
Statistics
Matches: 98, Mismatches: 8, Indels: 15
0.81 0.07 0.12
Matches are distributed among these distances:
28 6 0.06
29 35 0.36
30 30 0.31
31 23 0.23
32 4 0.04
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.25
Consensus pattern (29 bp):
CACACTTAGTGCTACATAGTCAAAACTCG
Found at i:80781527 original size:59 final size:59
Alignment explanation
Indices: 80781400--80781542 Score: 182
Period size: 59 Copynumber: 2.4 Consensus size: 59
80781390 CAACTGCGGC
* * * *
80781400 CACACGTTAGTGCTATATAATCAAAACTCGCACACTAATAGTGCCACATTAATTAAGCTCG
1 CACAC-TTAGTGCTACATAGTCAAAACTCGCACACT-ATAGTGCCACATTAATCAAACTCG
* *
80781461 CACACTTAGTGCTACATAGTCAAAACTCCGCACACT-TAGTGCTACA-TAGGTCAAACTCG
1 CACACTTAGTGCTACATAGTCAAAACT-CGCACACTATAGTGCCACATTA-ATCAAACTCG
80781520 CACACTTAGTGCTACATAGTCAA
1 CACACTTAGTGCTACATAGTCAA
80781543 TTCGCACCAC
Statistics
Matches: 74, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
58 2 0.03
59 39 0.53
60 20 0.27
61 13 0.18
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.25
Consensus pattern (59 bp):
CACACTTAGTGCTACATAGTCAAAACTCGCACACTATAGTGCCACATTAATCAAACTCG
Found at i:80781557 original size:29 final size:28
Alignment explanation
Indices: 80781458--80781559 Score: 134
Period size: 29 Copynumber: 3.5 Consensus size: 28
80781448 TTAATTAAGC
80781458 TCGCACACTTAGTGCTACATAGTCAAAACT
1 TCGCACACTTAGTGCTACATAGTC-AAA-T
* *
80781488 CCGCACACTTAGTGCTACATAGGTCAAAC
1 TCGCACACTTAGTGCTACATA-GTCAAAT
80781517 TCGCACACTTAGTGCTACATAGTC-AAT
1 TCGCACACTTAGTGCTACATAGTCAAAT
80781544 TCGCACCACTTTAGTG
1 TCGCA-CAC-TTAGTG
80781560 ACTGCCACAA
Statistics
Matches: 65, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
27 7 0.11
28 6 0.09
29 26 0.40
30 23 0.35
31 3 0.05
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.26
Consensus pattern (28 bp):
TCGCACACTTAGTGCTACATAGTCAAAT
Found at i:80784952 original size:18 final size:18
Alignment explanation
Indices: 80784910--80784952 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
80784900 GCCCATTCCG
* *
80784910 AAGTATATATATATACAT
1 AAGTATGTATATATACAC
80784928 ATA-TATGTATATATACAC
1 A-AGTATGTATATATACAC
80784946 AAGTATG
1 AAGTATG
80784953 CCCATTCGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
17 1 0.05
18 19 0.90
19 1 0.05
ACGTcount: A:0.47, C:0.07, G:0.09, T:0.37
Consensus pattern (18 bp):
AAGTATGTATATATACAC
Found at i:80785455 original size:56 final size:55
Alignment explanation
Indices: 80785393--80785575 Score: 235
Period size: 56 Copynumber: 3.3 Consensus size: 55
80785383 GAGATTGGTG
* *
80785393 CTAAGTGTGCGGGTTTAAATTGTGCAGCACTAAGTGTGCGA-ATTGACTATGTAGCA
1 CTAAGTGTGCGAGTTT-AATTGTG-AGCACTAAGTGTGCGAGTTTGACTATGTAGCA
*
80785449 CTAAGTGTGCGAGTTTGACTATGT-AGCACTAAGTGTGCGAGTTTGACTATGTAGCA
1 CTAAGTGTGCGAGTTT-AAT-TGTGAGCACTAAGTGTGCGAGTTTGACTATGTAGCA
* * * * *
80785505 CTAAGTGTGCGAGCTTGATTATGTAGCACTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAATTGTG-AGCACTAAGTGTGCGAGTTTGACTATGTAGCA
80785561 CTAAGTGTGCGAGTT
1 CTAAGTGTGCGAGTT
80785576 GATTATATAG
Statistics
Matches: 112, Mismatches: 11, Indels: 8
0.85 0.08 0.06
Matches are distributed among these distances:
54 2 0.02
55 17 0.15
56 90 0.80
57 3 0.03
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.32
Consensus pattern (55 bp):
CTAAGTGTGCGAGTTTAATTGTGAGCACTAAGTGTGCGAGTTTGACTATGTAGCA
Found at i:80785475 original size:28 final size:28
Alignment explanation
Indices: 80785418--80785598 Score: 276
Period size: 28 Copynumber: 6.5 Consensus size: 28
80785408 TAAATTGTGC
*
80785418 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
80785445 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
80785473 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
80785501 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
80785529 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
80785557 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
80785584 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
80785599 GACTTATTAT
Statistics
Matches: 147, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
27 40 0.27
28 107 0.73
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:80787748 original size:612 final size:612
Alignment explanation
Indices: 80786585--80787748 Score: 2247
Period size: 612 Copynumber: 1.9 Consensus size: 612
80786575 ATTATGTATT
*
80786585 CGAAGCTCGATGAGTCTATTTTCATATAGAAGTAACGAAAAGATCATATGGATAGTATGTTAAGA
1 CGAAGCTCGATGAGTCTATTTTCATATAGAAGTAACGAAAAGATCATATGGACAGTATGTTAAGA
80786650 GATATTCAGGTTCTCGTGAGACAGGGCCAGAACGGTTTCTGGATTCCCTGTTCCGACTTTGGAGA
66 GATATTCAGGTTCTCGTGAGACAGGGCCAGAACGGTTTCTGGATTCCCTGTTCCGACTTTGGAGA
**
80786715 TTTATTATAAATTAACCAGAGATAATTAGTTGTCATGCCATATATGTACAGATTCCTCTCTGAGT
131 TTTATTATAAATTAACCAGAGATAATTAGGAGTCATGCCATATATGTACAGATTCCTCTCTGAGT
*
80786780 CTAGTTTCTATAGAAACAAACGACATCAGTATTGAAGCTCTGTGCAGGGAGATATCCAATTCGTA
196 CTAGTTTCTATAGAAACAAACAACATCAGTATTGAAGCTCTGTGCAGGGAGATATCCAATTCGTA
* *
80786845 ATGCGCAAGGGTCAGTGTAGTCGATCCCTGTAACATGGGATACTTTTACTAATAAACTGTACTAA
261 ATGCGCAAGGGTCAGTGTAGTCGATCCCTGTAACATGGGAGACTTTGACTAATAAACTGTACTAA
80786910 TTGGCCAGACCAAAAATTCTAGAAAAAATTATGGAGATGGGCATATGAGTCTAGTTTCAGGGAAA
326 TTGGCCAGACCAAAAATTCTAGAAAAAATTATGGAGATGGGCATATGAGTCTAGTTTCAGGGAAA
80786975 AATCACAAAACTGATTTTCGAGTTGTGAAACTCAAGATATGATTTTTAAAGCGACTAGTACGCAG
391 AATCACAAAACTGATTTTCGAGTTGTGAAACTCAAGATATGATTTTTAAAGCGACTAGTACGCAG
80787040 ATCGGCAGCTTGTCTAGGAAATGTCGAATAAGTGGTTTGAAGTCTGTTAACACCTCGTGTTCGAC
456 ATCGGCAGCTTGTCTAGGAAATGTCGAATAAGTGGTTTGAAGTCTGTTAACACCTCGTGTTCGAC
80787105 TCCGGCGACGGTATCGGGTTCGGGGTGTTACATTTAATTGGTATCAGAGTCAGGTTTAGTCGGTT
521 TCCGGCGACGGTATCGGGTTCGGGGTGTTACATTTAATTGGTATCAGAGTCAGGTTTAGTCGGTT
80787170 CTAGGACTACCATAGCACGTATGTAGG
586 CTAGGACTACCATAGCACGTATGTAGG
80787197 CGAAGCTCGATGAGTCTATTTTCATATAGAAGTAACGAAAAGATCATATGGACAGTATGTTAAGA
1 CGAAGCTCGATGAGTCTATTTTCATATAGAAGTAACGAAAAGATCATATGGACAGTATGTTAAGA
80787262 GATATTCAGGTTCTCGTGAGACAGGGCCAGAACGGTTTCTGGATTCCCTGTTCCGACTTTGGAGA
66 GATATTCAGGTTCTCGTGAGACAGGGCCAGAACGGTTTCTGGATTCCCTGTTCCGACTTTGGAGA
80787327 TTTATTATAAATTAACCAGAGATAATTAGGAGTCATGCCATATATGTACAGATTCCTCTCTGAGT
131 TTTATTATAAATTAACCAGAGATAATTAGGAGTCATGCCATATATGTACAGATTCCTCTCTGAGT
80787392 CTAGTTTCTATAGAAACAAACAACATCAGTATTGAAGCTCTGTGCAGGGAGATATCCAATTCGTA
196 CTAGTTTCTATAGAAACAAACAACATCAGTATTGAAGCTCTGTGCAGGGAGATATCCAATTCGTA
80787457 ATGCGCAAGGGTCAGTGTAGTCGATCCCTGTAACATGGGAGACTTTGACTAATAAACTGTACTAA
261 ATGCGCAAGGGTCAGTGTAGTCGATCCCTGTAACATGGGAGACTTTGACTAATAAACTGTACTAA
* *
80787522 TTGGCCTGACCAAAAATTCTAGAAAAAATTATGGATATGGGCATATGAGTCTAGTTTCAGGGAAA
326 TTGGCCAGACCAAAAATTCTAGAAAAAATTATGGAGATGGGCATATGAGTCTAGTTTCAGGGAAA
80787587 AATCACAAAACTGATTTTCGAGTTGTGAAACTCAAGATATGATTTTTAAAGCGACTAGTACGCAG
391 AATCACAAAACTGATTTTCGAGTTGTGAAACTCAAGATATGATTTTTAAAGCGACTAGTACGCAG
*
80787652 ATCGGCAGCTTGTCTGGGAAATGTCGAATAAGTGGTTTGAAGTCTGTTAACACCTCGTGTTCGAC
456 ATCGGCAGCTTGTCTAGGAAATGTCGAATAAGTGGTTTGAAGTCTGTTAACACCTCGTGTTCGAC
80787717 TCCGGCGACGGTATCGGGTTCGGGGTGTTACA
521 TCCGGCGACGGTATCGGGTTCGGGGTGTTACA
80787749 CGTTCTGTTA
Statistics
Matches: 543, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
612 543 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.29
Consensus pattern (612 bp):
CGAAGCTCGATGAGTCTATTTTCATATAGAAGTAACGAAAAGATCATATGGACAGTATGTTAAGA
GATATTCAGGTTCTCGTGAGACAGGGCCAGAACGGTTTCTGGATTCCCTGTTCCGACTTTGGAGA
TTTATTATAAATTAACCAGAGATAATTAGGAGTCATGCCATATATGTACAGATTCCTCTCTGAGT
CTAGTTTCTATAGAAACAAACAACATCAGTATTGAAGCTCTGTGCAGGGAGATATCCAATTCGTA
ATGCGCAAGGGTCAGTGTAGTCGATCCCTGTAACATGGGAGACTTTGACTAATAAACTGTACTAA
TTGGCCAGACCAAAAATTCTAGAAAAAATTATGGAGATGGGCATATGAGTCTAGTTTCAGGGAAA
AATCACAAAACTGATTTTCGAGTTGTGAAACTCAAGATATGATTTTTAAAGCGACTAGTACGCAG
ATCGGCAGCTTGTCTAGGAAATGTCGAATAAGTGGTTTGAAGTCTGTTAACACCTCGTGTTCGAC
TCCGGCGACGGTATCGGGTTCGGGGTGTTACATTTAATTGGTATCAGAGTCAGGTTTAGTCGGTT
CTAGGACTACCATAGCACGTATGTAGG
Found at i:80791939 original size:88 final size:87
Alignment explanation
Indices: 80791670--80791939 Score: 194
Period size: 88 Copynumber: 3.1 Consensus size: 87
80791660 AAGTTGTAGT
* *
80791670 AGAGCAAATCGAAAATGGTGAATCTTATCTCCATGTATCGGAAATGGAGCAGATTTTACCACCAA
1 AGAGCAGATCGAAAATGGTGAATCTTATCTACATGTATCGG-AATGGAGCAGATTTTACCACCAA
* * *
80791735 CCTCATCTCTCTGAGGTTGTAAG
65 TCTCATCTCTCTAAGGTTGCAAG
* * ** * * * * * * * **
80791758 AGAGCAGGTTGAAGAATGAGTCTTATCTT-TCTA-AGGTAGCAAGAAAGTAAACTAAAGATTA--
1 AGAGCAGATCGAA-AATG-GT-GAATCTTATCTACATGTATC-GGAATG-GAGC-AGATTTTACC
* * *
80791819 A-AAATCTTATCTCCCTGAA-GTTGC-AG
60 ACCAATCTCATCTCTCT-AAGGTTGCAAG
*
80791845 TGGAGCAGATCGAAAATGGTGAATCTTATCTACATGTATCGGCAATGGAGCAGATTTTACCACCA
1 -AGAGCAGATCGAAAATGGTGAATCTTATCTACATGTATCGG-AATGGAGCAGATTTTACCACCA
*
80791910 ATCTCATCTCTCTAAGGTAGCAAG
64 ATCTCATCTCTCTAAGGTTGCAAG
80791934 AGAGCA
1 AGAGCA
80791940 AGTTGAAGAA
Statistics
Matches: 126, Mismatches: 40, Indels: 32
0.64 0.20 0.16
Matches are distributed among these distances:
85 10 0.08
86 9 0.07
87 17 0.13
88 56 0.44
89 16 0.13
90 8 0.06
91 10 0.08
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (87 bp):
AGAGCAGATCGAAAATGGTGAATCTTATCTACATGTATCGGAATGGAGCAGATTTTACCACCAAT
CTCATCTCTCTAAGGTTGCAAG
Found at i:80792257 original size:177 final size:177
Alignment explanation
Indices: 80791634--80792366 Score: 861
Period size: 176 Copynumber: 4.1 Consensus size: 177
80791624 GCGACATTGG
* * ** * *
80791634 TGAAGATTGAAGATCTTATCTCCATGAAGTTGTAGTAGAGCAAATCGAAAATGGTGAATCTTATC
1 TGAAGATTGAAGATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATCGAAAATGGCGAATCTTATC
* * * *
80791699 TCCATGTATCGGAAATGGAGCAGATTTTACCACCAACCTCATCTCTCTGAGGTTGTAAGAGAGCA
66 TCCATGTATCGGCAATGGAGCAGATTTTACCACCAACCTCATCTCTCTAAGGTAGCAAGAGAGCA
* * * *
80791764 GGTTGAAGA--ATGAGTCTTATCTTTCTAAGGTAGCAAGAAAGTAAAC
131 GGTTGAAGATGAT-AGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGAC
* * * * *
80791810 TAAAGATTAAAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAAATGGTGAATCTTATC
1 TGAAGATTGAAGATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATCGAAAATGGCGAATCTTATC
* *
80791875 TACATGTATCGGCAATGGAGCAGATTTTACCACCAATCTCATCTCTCTAAGGTAGCAAGAGAGCA
66 TCCATGTATCGGCAATGGAGCAGATTTTACCACCAACCTCATCTCTCTAAGGTAGCAAGAGAGCA
* * *
80791940 AGTTGAAGAATG-T-GTCTTATCTTTCTGAGGTAGCAAGAAAGCAGAT
131 GGTTGAAG-ATGATAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGAC
* * * * * *
80791986 TG-AGAATTGAAGATTTTGTCTCCCTGAAGTTGCAGCGGAGTAGATTTTCGCAGATGGCTAATCT
1 TGAAG-ATTGAAGATCTTATCTCCCTGAAGTTGCAGCGGAGCAGA---TCGAAAATGGCGAATCT
* * * * * *
80792050 TATCTCCATGTATCGGCAATGGGGCAGATTTAAGCCACCAGCCTTATCTATCTAAGGTAGCAAAA
62 TATCTCCATGTATCGGCAATGGAGCAGATTTTA-CCACCAACCTCATCTCTCTAAGGTAGCAAGA
* *
80792115 GAGTAGGTTGAAGATGATAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGAC
126 GAGCAGGTTGAAGATGATAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGAC
* * * * *
80792167 TGAAGATTGAAAATCTTATCTCCCT-AAATAGTAGCGGAGCGGATC-AAAGATGGCGAATCTTAT
1 TGAAGATTGAAGATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATCGAAA-ATGGCGAATCTTAT
* ** * * * *
80792230 CTCCATGTATCGGCAATGGAACAGATTTTAGCCACTGACTTTATCTCTCTGAGGTAGCACGAGAG
65 CTCCATGTATCGGCAATGGAGCAGATTTTA-CCACCAACCTCATCTCTCTAAGGTAGCAAGAGAG
*
80792295 CCA-GTTGAAGATGATAGTCTTATCTTCCTGAGGTAGCAAAAAAGCAGAC
129 -CAGGTTGAAGATGATAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGAC
80792344 TGAAGATTGAAGATCTTATCTCC
1 TGAAGATTGAAGATCTTATCTCC
80792367 TCATGTAATT
Statistics
Matches: 476, Mismatches: 68, Indels: 25
0.84 0.12 0.04
Matches are distributed among these distances:
175 2 0.00
176 188 0.39
177 136 0.29
178 2 0.00
179 46 0.10
180 51 0.11
181 49 0.10
182 2 0.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (177 bp):
TGAAGATTGAAGATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATCGAAAATGGCGAATCTTATC
TCCATGTATCGGCAATGGAGCAGATTTTACCACCAACCTCATCTCTCTAAGGTAGCAAGAGAGCA
GGTTGAAGATGATAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGAC
Found at i:80796372 original size:12 final size:12
Alignment explanation
Indices: 80796355--80796393 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
80796345 ATGACACAAA
80796355 AATAATAATAAC
1 AATAATAATAAC
*
80796367 AATAATAAGAAC
1 AATAATAATAAC
* *
80796379 AACAATGATAAC
1 AATAATAATAAC
80796391 AAT
1 AAT
80796394 GTGTAGAGGC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.64, C:0.10, G:0.05, T:0.21
Consensus pattern (12 bp):
AATAATAATAAC
Found at i:80797843 original size:3 final size:3
Alignment explanation
Indices: 80797837--80797882 Score: 51
Period size: 3 Copynumber: 15.7 Consensus size: 3
80797827 TTAATCCTCC
* *
80797837 TAT TAT TAT TA- TAGC TAT TAT TAT TAT TAT TAT T-T TGT TAT TAT
1 TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
80797881 TA
1 TA
80797883 ATTTTAATTC
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
2 4 0.11
3 32 0.84
4 2 0.05
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:80799564 original size:18 final size:18
Alignment explanation
Indices: 80799541--80799601 Score: 70
Period size: 18 Copynumber: 3.4 Consensus size: 18
80799531 CGAATTAGAT
80799541 ACAATATTAATGAATGTC
1 ACAATATTAATGAATGTC
* ** *
80799559 ACAATATGAA-GATAAATA
1 ACAATATTAATGA-ATGTC
80799577 ACAATATTAATGAATGTC
1 ACAATATTAATGAATGTC
80799595 ACAATAT
1 ACAATAT
80799602 GAAGATAAAT
Statistics
Matches: 33, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
17 2 0.06
18 29 0.88
19 2 0.06
ACGTcount: A:0.51, C:0.10, G:0.10, T:0.30
Consensus pattern (18 bp):
ACAATATTAATGAATGTC
Found at i:80799588 original size:36 final size:36
Alignment explanation
Indices: 80799541--80799613 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
80799531 CGAATTAGAT
80799541 ACAATATTAATGAATGTCACAATATGAAGATAAATA
1 ACAATATTAATGAATGTCACAATATGAAGATAAATA
80799577 ACAATATTAATGAATGTCACAATATGAAGATAAATA
1 ACAATATTAATGAATGTCACAATATGAAGATAAATA
80799613 A
1 A
80799614 TTTCTAGTAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.53, C:0.08, G:0.11, T:0.27
Consensus pattern (36 bp):
ACAATATTAATGAATGTCACAATATGAAGATAAATA
Found at i:80799871 original size:27 final size:27
Alignment explanation
Indices: 80799815--80799876 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
80799805 ATTTAACATG
* *
80799815 AATAACATATAAAACAATTTGAAATAA
1 AATAATATATAAAACAATTTCAAATAA
*
80799842 AATAATATATAAAGCAAATTTCAAAT-A
1 AATAATATATAAAAC-AATTTCAAATAA
80799869 AATAATAT
1 AATAATAT
80799877 GTTAAATAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
27 22 0.71
28 9 0.29
ACGTcount: A:0.61, C:0.06, G:0.03, T:0.29
Consensus pattern (27 bp):
AATAATATATAAAACAATTTCAAATAA
Found at i:80799888 original size:27 final size:26
Alignment explanation
Indices: 80799805--80799876 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 26
80799795 TATGAAAAAG
* * *
80799805 ATTTAACATGAATAACATATAAAAC-A
1 ATTTAA-ATAAATAATATATAAAGCAA
80799831 ATTTGAAATAAAATAATATATAAAGCAA
1 ATTT-AAAT-AAATAATATATAAAGCAA
80799859 ATTTCAAATAAATAATAT
1 ATTT-AAATAAATAATAT
80799877 GTTAAATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
26 6 0.15
27 24 0.62
28 9 0.23
ACGTcount: A:0.58, C:0.07, G:0.04, T:0.31
Consensus pattern (26 bp):
ATTTAAATAAATAATATATAAAGCAA
Found at i:80800062 original size:15 final size:15
Alignment explanation
Indices: 80800042--80800071 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
80800032 AATCCAAAGT
*
80800042 AAAATTTTAAGATAA
1 AAAATTTTAAAATAA
80800057 AAAATTTTAAAATAA
1 AAAATTTTAAAATAA
80800072 GTAATATATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (15 bp):
AAAATTTTAAAATAA
Found at i:80800542 original size:3 final size:3
Alignment explanation
Indices: 80800531--80800672 Score: 69
Period size: 3 Copynumber: 47.3 Consensus size: 3
80800521 TGATGATAGC
* * *
80800531 AAT AGT AAT AAT -AT AAT AAT AAT AAT -GT AGAG AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT
* * * * * * *
80800575 ACATT AAT AAG AAT AAT AAT AGT -GT ATT GAT AAT AAC AAT AAT AGAA
1 A-A-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT
* * * * *
80800622 AAT AAT GAT AA- AGT AAT AAT AAT AA- ACT AAGG AAT AAT GAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT
80800666 AAT AAT A
1 AAT AAT A
80800673 CGATAAAAAT
Statistics
Matches: 102, Mismatches: 27, Indels: 20
0.68 0.18 0.13
Matches are distributed among these distances:
2 7 0.07
3 86 0.84
4 7 0.07
5 2 0.02
ACGTcount: A:0.58, C:0.02, G:0.10, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:80814382 original size:48 final size:48
Alignment explanation
Indices: 80814317--80814901 Score: 965
Period size: 48 Copynumber: 12.1 Consensus size: 48
80814307 GCTGAAATTG
*
80814317 ATGTATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* * *
80814365 ATGTATAAGATATGTATATGTGGTAAAGCCGAATGGCTAGTATGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
80814413 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
80814461 ATGTATCAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
80814509 ATGTATGAGATATGTATATGTGGTAAAGTCGAATAGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
80814557 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
80814605 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
80814653 ATGTATGAGACATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
80814701 ATGTATGAGACATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
* *
80814751 ATATATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-AT
* *
80814801 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
80814849 ATGTATGAGATATGTATATGTGGTAAAGCCAAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
80814897 ATGTA
1 ATGTA
80814902 GGCGATGTGT
Statistics
Matches: 510, Mismatches: 23, Indels: 8
0.94 0.04 0.01
Matches are distributed among these distances:
48 418 0.82
49 5 0.01
50 86 0.17
51 1 0.00
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:80815100 original size:37 final size:37
Alignment explanation
Indices: 80815050--80815156 Score: 187
Period size: 37 Copynumber: 2.9 Consensus size: 37
80815040 AAATATATTT
80815050 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
80815087 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
* **
80815124 CGGGTAAGACCCGATAACTTTGTGTGGAGATTT
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTT
80815157 CATCTGAGCT
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.22, C:0.18, G:0.32, T:0.28
Consensus pattern (37 bp):
CGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
Found at i:80820478 original size:22 final size:22
Alignment explanation
Indices: 80820453--80820497 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
80820443 TTTAATAAAG
80820453 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* * *
80820475 AAAATATTTATAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
80820497 A
1 A
80820498 CACTCCCCCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.49, C:0.13, G:0.02, T:0.36
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:80824177 original size:22 final size:22
Alignment explanation
Indices: 80824152--80824196 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
80824142 TTTAATAAAG
80824152 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
80824174 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
80824196 A
1 A
80824197 CAGTCTTGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:80825941 original size:9 final size:9
Alignment explanation
Indices: 80825924--80825960 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
80825914 TGAGTTTTCG
80825924 AATTCGAAT
1 AATTCGAAT
*
80825933 AACTCGAAT
1 AATTCGAAT
80825942 AATTCGAAT
1 AATTCGAAT
80825951 AATTCGAAT
1 AATTCGAAT
80825960 A
1 A
80825961 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:80830406 original size:31 final size:31
Alignment explanation
Indices: 80830368--80830427 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
80830358 TCATATTCTC
*
80830368 GAATGATATCTTGAACCACTCTAGCCCCTCT
1 GAATGATATCCTGAACCACTCTAGCCCCTCT
*
80830399 GAATGATATCCTGGACCACTCTAGCCCCT
1 GAATGATATCCTGAACCACTCTAGCCCCT
80830428 TCACACGAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.25, C:0.33, G:0.15, T:0.27
Consensus pattern (31 bp):
GAATGATATCCTGAACCACTCTAGCCCCTCT
Found at i:80831095 original size:31 final size:31
Alignment explanation
Indices: 80831060--80831119 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
80831050 CTCATATTCC
80831060 TGAATGATATCTTGGACCACTCTAGCCCCTT
1 TGAATGATATCTTGGACCACTCTAGCCCCTT
80831091 TGAATGATATCTTGGACCACTCTAGCCCC
1 TGAATGATATCTTGGACCACTCTAGCCCC
80831120 CTCACACGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.30
Consensus pattern (31 bp):
TGAATGATATCTTGGACCACTCTAGCCCCTT
Found at i:80836176 original size:20 final size:20
Alignment explanation
Indices: 80836152--80836201 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
80836142 GTGGATAGGC
80836152 CACCAGTGTTGTAGACAAGT
1 CACCAGTGTTGTAGACAAGT
* ** *
80836172 TACCAGTAATGTGGACAAGT
1 CACCAGTGTTGTAGACAAGT
*
80836192 CACTAGTGTT
1 CACCAGTGTT
80836202 ACAGACAAGC
Statistics
Matches: 22, Mismatches: 8, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (20 bp):
CACCAGTGTTGTAGACAAGT
Found at i:80836178 original size:40 final size:40
Alignment explanation
Indices: 80836134--80836238 Score: 120
Period size: 40 Copynumber: 2.6 Consensus size: 40
80836124 AGAGAAACTG
* * ** *
80836134 CCAGTAATGTGGATAGGCCACCAGTGTTGTAGACAAGTTA
1 CCAGTAATGTGGAAAAGCCACCAGTGTTACAGACAAGCTA
* * * *
80836174 CCAGTAATGTGGACAAGTCACTAGTGTTACAGACAAGCTG
1 CCAGTAATGTGGAAAAGCCACCAGTGTTACAGACAAGCTA
*
80836214 CCAATAATGTGGAAAAGCCACCAGT
1 CCAGTAATGTGGAAAAGCCACCAGT
80836239 AATGCAGATA
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (40 bp):
CCAGTAATGTGGAAAAGCCACCAGTGTTACAGACAAGCTA
Found at i:80836259 original size:20 final size:19
Alignment explanation
Indices: 80836236--80836278 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
80836226 AAAAGCCACC
*
80836236 AGTAATGCAGATAAACTGTT
1 AGTAATGCA-ACAAACTGTT
* *
80836256 AGTATTGCAACAAGCTGTT
1 AGTAATGCAACAAACTGTT
80836275 AGTA
1 AGTA
80836279 TTGTGAACAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (19 bp):
AGTAATGCAACAAACTGTT
Found at i:80852933 original size:40 final size:40
Alignment explanation
Indices: 80852882--80853141 Score: 421
Period size: 40 Copynumber: 6.5 Consensus size: 40
80852872 ATAACCGCAA
* * * *
80852882 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
80852922 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* * *
80852962 GCATAATTGCCTTCGGGTCTTAGCCCGGATTTATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
80853002 GCACAAATGCCTTCGGGTTTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
80853042 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
80853082 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
80853122 GCACAAATGCCTTCGGGTCT
1 GCACAAATGCCTTCGGGTCT
80853142 GTGACAGCCC
Statistics
Matches: 203, Mismatches: 17, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 203 1.00
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:80854808 original size:80 final size:79
Alignment explanation
Indices: 80854724--80854895 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
80854714 GGACTAAGAT
*
80854724 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
80854788 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
80854804 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
80854869 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
80854883 CCGAAGGCATTTG
1 CCGAAGGCATTTG
80854896 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:80854875 original size:39 final size:39
Alignment explanation
Indices: 80854671--80854893 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
80854661 TTGAATGCTG
* * * * *
80854671 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
80854711 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
80854750 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
80854791 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
80854831 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
80854870 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
80854894 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:80854913 original size:79 final size:80
Alignment explanation
Indices: 80854751--80854928 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
80854741 AGATACAAAT
* * * *
80854751 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
80854816 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
80854831 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
80854895 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
80854910 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
80854929 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:80861760 original size:40 final size:40
Alignment explanation
Indices: 80861676--80861900 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
80861666 TTGAATGATG
* * * *
80861676 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
80861716 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
80861756 TCCGGGCTAAG-CCTGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
80861795 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
80861835 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
80861876 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
80861901 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 33 0.20
40 120 0.74
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:80861922 original size:119 final size:119
Alignment explanation
Indices: 80861676--80861933 Score: 274
Period size: 119 Copynumber: 2.2 Consensus size: 119
80861666 TTGAATGATG
* *
80861676 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* * ** *
80861741 GTGCGAGATACTAATTCCGGGCTAAGCCTGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
* * * **
80861795 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
80861858 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAAA
* *
80861915 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
80861934 TACGTGATTT
Statistics
Matches: 116, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 83 0.72
120 30 0.26
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
Found at i:80871636 original size:49 final size:48
Alignment explanation
Indices: 80871512--80871876 Score: 283
Period size: 49 Copynumber: 7.7 Consensus size: 48
80871502 AGGGTATAAT
* * *
80871512 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTATC-CA-TCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGAC-TATCAAATTGAA
* * * *
80871559 GTCGATGCCTTGTCCGAGACATGGTCTTACACTGACTATCGAAATTGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATC-AAATTGAA
* * * *
80871608 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTTATC-CA-TCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGAC-TATCAAATTGAA
** * * *
80871655 GTTGATGCCATGTCCGAGACATGATCTTACACTGACTATCAAAATTGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATC-AAATTGAA
* * *
80871704 GCCGACGCCATGTCCCAGACATGGTCTTACACT-ATCTCTCACATATTCGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTATCA-A-ATT-GAA
* *
80871755 -CCGATGCCATGTCCCAGAAATGGTCTTACACTGAC-A-C--ATCTCATA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAT-TGA-A
* ** *
80871800 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACATCTTGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTAT-CAAATTGAA
* *
80871846 GCCCATG-CATGTCCCGGACAT-GTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
80871877 AGCTCTCGTC
Statistics
Matches: 254, Mismatches: 44, Indels: 41
0.75 0.13 0.12
Matches are distributed among these distances:
44 14 0.06
45 15 0.06
46 44 0.17
47 66 0.26
48 7 0.03
49 68 0.27
50 38 0.15
51 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAATTGAA
Found at i:80871676 original size:96 final size:96
Alignment explanation
Indices: 80871512--80871736 Score: 405
Period size: 96 Copynumber: 2.3 Consensus size: 96
80871502 AGGGTATAAT
* *
80871512 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTATCCATCAAGTCGATGCCTTGTCCGAG
1 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTTATCCATCAAGTCGATGCCATGTCCGAG
* *
80871577 ACATGGTCTTACACTGACTATCGAAATTGAG
66 ACATGATCTTACACTGACTATCAAAATTGAG
*
80871608 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTTATCCATCAAGTTGATGCCATGTCCGAG
1 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTTATCCATCAAGTCGATGCCATGTCCGAG
80871673 ACATGATCTTACACTGACTATCAAAATTGAG
66 ACATGATCTTACACTGACTATCAAAATTGAG
80871704 GCCGACGCCATGTCCCAGACATGGTCTTACACT
1 GCCGACGCCATGTCCCAGACATGGTCTTACACT
80871737 ATCTCTCACA
Statistics
Matches: 124, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
96 124 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (96 bp):
GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTTATCCATCAAGTCGATGCCATGTCCGAG
ACATGATCTTACACTGACTATCAAAATTGAG
Found at i:80871840 original size:46 final size:49
Alignment explanation
Indices: 80871512--80871922 Score: 251
Period size: 46 Copynumber: 8.7 Consensus size: 49
80871502 AGGGTATAAT
*
80871512 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTATCCA--TCA-A
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TATACATCTCATA
* * * * * * *
80871559 GTCGATGCCTTGTCCGAGACATGGTCTTACACTGACTATCGAAAT-TGA-G
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTAT--ACATCTCATA
* *
80871608 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTTATCCA--TCA-A
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TATACATCTCATA
** * * * * * *
80871655 GTTGATGCCATGTCCGAGACATGATCTTACACTGACTATCAAAAT-TGA-G
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTAT--ACATCTCATA
* ** * * *
80871704 GCCGACGCCATGTCCCAGACATGGTCTTACACTATCTCTCACATATTCGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTAT-ACAT-CTCATA
* *
80871755 -CCGATGCCATGTCCCAGAAATGGTCTTACACT-G--ACACATCTCATA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATACATCTCATA
80871800 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACATCT--TGA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATACATCTCAT-A
* * * * *
80871845 GGCCCATG-CATGTCCCGGACAT-GTCTTACACTAGCTCT-CGTCTCAATA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATACATCTC-ATA
* *
80871893 -CTGATG-CATGTCCTAGACAT-GTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
80871923 AGCACACAAA
Statistics
Matches: 287, Mismatches: 57, Indels: 41
0.75 0.15 0.11
Matches are distributed among these distances:
44 11 0.04
45 19 0.07
46 84 0.29
47 65 0.23
48 7 0.02
49 67 0.23
50 34 0.12
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATACATCTCATA
Found at i:80873188 original size:43 final size:44
Alignment explanation
Indices: 80873109--80873229 Score: 138
Period size: 44 Copynumber: 2.8 Consensus size: 44
80873099 TTACACACAT
* * *
80873109 CCATAATGAACTTGGA-CAACTCAACGAGATCGGATG-CTCGTAC
1 CCATAATGAACTCGGACCAACTCAATGAGATC-GATGCCTCATAC
*
80873152 CCATAATGAACTCGGACCAACTCAATGAGCTCGATGCCTCATAC
1 CCATAATGAACTCGGACCAACTCAATGAGATCGATGCCTCATAC
** * * *
80873196 ATATCATGAACCCGGACCAACTCAATGAGGTCGA
1 CCATAATGAACTCGGACCAACTCAATGAGATCGA
80873230 ATTTCAAAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
43 19 0.28
44 48 0.72
ACGTcount: A:0.33, C:0.28, G:0.19, T:0.20
Consensus pattern (44 bp):
CCATAATGAACTCGGACCAACTCAATGAGATCGATGCCTCATAC
Found at i:80873938 original size:23 final size:23
Alignment explanation
Indices: 80873911--80873959 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
80873901 CATGAAAAAT
80873911 TACCTAGGAAAAGTTGTTAAACA
1 TACCTAGGAAAAGTTGTTAAACA
80873934 TACCTAGGAAAAGTTGTTAAACA
1 TACCTAGGAAAAGTTGTTAAACA
80873957 TAC
1 TAC
80873960 TTCAATCTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.27
Consensus pattern (23 bp):
TACCTAGGAAAAGTTGTTAAACA
Found at i:80887904 original size:20 final size:20
Alignment explanation
Indices: 80887879--80887922 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
80887869 TCGTTTCCAG
*
80887879 CTCACTCGAGCTCAAGTCAA
1 CTCACTCAAGCTCAAGTCAA
*
80887899 CTCACTCAAGCTCAAGTCAG
1 CTCACTCAAGCTCAAGTCAA
80887919 CTCA
1 CTCA
80887923 ATCTTAACCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.36, G:0.14, T:0.20
Consensus pattern (20 bp):
CTCACTCAAGCTCAAGTCAA
Found at i:80890508 original size:18 final size:17
Alignment explanation
Indices: 80890425--80890553 Score: 61
Period size: 18 Copynumber: 7.4 Consensus size: 17
80890415 GGAACAAGAA
*
80890425 ATTGAAAAAGAGAGTGAG
1 ATTGAAAAAGA-AATGAG
*
80890443 ATTGAAGAAAGAAACGAG
1 ATTGAA-AAAGAAATGAG
* * *
80890461 AGTGTAAAAGAAACGAGTG
1 ATTGAAAAAGAAATGA--G
*
80890480 TCATGGAAAAAGAAATTGAG
1 --ATTGAAAAAGAAA-TGAG
*
80890500 ATTGAAAAAG-GAT--G
1 ATTGAAAAAGAAATGAG
*
80890514 --TGAAAAAGAGAAAGAG
1 ATTGAAAAAGA-AATGAG
*
80890530 ATCGAAAAAGAAATTGAG
1 ATTGAAAAAGAAA-TGAG
80890548 ATTGAA
1 ATTGAA
80890554 CAAAAGTGTA
Statistics
Matches: 83, Mismatches: 15, Indels: 26
0.67 0.12 0.21
Matches are distributed among these distances:
12 8 0.10
14 2 0.02
16 2 0.02
17 13 0.16
18 39 0.47
19 6 0.07
20 1 0.01
21 10 0.12
22 2 0.02
ACGTcount: A:0.53, C:0.03, G:0.28, T:0.16
Consensus pattern (17 bp):
ATTGAAAAAGAAATGAG
Found at i:80892304 original size:20 final size:20
Alignment explanation
Indices: 80892258--80892304 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
80892248 AGCTCGTTTC
*
80892258 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
80892278 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
80892298 CAGCTCA
1 CAGCTCA
80892305 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:80895552 original size:29 final size:29
Alignment explanation
Indices: 80895513--80895591 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
80895503 CTTAATAATC
*
80895513 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
80895543 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
* *
80895572 AGCCCGCACATTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
80895592 ATCTCACAAC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
28 3 0.07
29 37 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:80899455 original size:44 final size:45
Alignment explanation
Indices: 80899389--80899496 Score: 157
Period size: 45 Copynumber: 2.4 Consensus size: 45
80899379 GGGCGTTACA
* *
80899389 CTAGCAGGCTATAATGCTGGTGAAATGA-TA-TCGGGCCTTTGAGC
1 CTAGCAGGCTATAATGCCGGTGAAAT-ACTATTCGGGCCTTCGAGC
*
80899433 CTAGCAGGCTATAATGCCGGTGAGATACTATTCGGGCCTTCGAGC
1 CTAGCAGGCTATAATGCCGGTGAAATACTATTCGGGCCTTCGAGC
*
80899478 CTAGTAGGCTATAATGCCG
1 CTAGCAGGCTATAATGCCG
80899497 ATGGATGAAT
Statistics
Matches: 58, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
43 1 0.02
44 26 0.45
45 31 0.53
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (45 bp):
CTAGCAGGCTATAATGCCGGTGAAATACTATTCGGGCCTTCGAGC
Found at i:80902489 original size:48 final size:48
Alignment explanation
Indices: 80902425--80902856 Score: 693
Period size: 48 Copynumber: 9.0 Consensus size: 48
80902415 CAAGATAAAT
* *
80902425 ATATATATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
*
80902473 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
* *
80902521 GTATATATATGTGGTAAAGCCAAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
*
80902569 ATATATATATGTGGTAAAGCCAAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
** *
80902617 ATATATATATGCAGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
* *
80902665 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATAGGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
** * *
80902713 ATATATATATGCAGTAAAGCCGAATGGCTAATGTGAAATGTGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
* * *
80902761 ATATGTATATGTGGTAATGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
*
80902809 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
80902857 CAATATGTAG
Statistics
Matches: 355, Mismatches: 29, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 355 1.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.31
Consensus pattern (48 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
Found at i:80911313 original size:45 final size:44
Alignment explanation
Indices: 80911200--80911399 Score: 278
Period size: 44 Copynumber: 4.5 Consensus size: 44
80911190 TACGGTACTA
*
80911200 ATCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
1 ATCGGGCCTTCGAGCCTAGCAGGCTATAATGCTGGTGAAATGAT
* *
80911244 ATCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGAT-ACT
1 ATCGGGCCTTCGAGCCTAGCAGGCTATAATGCTGGTGAAATGA-T
*
80911288 ATTCGGGCCTTCGAGCCTAGTAGGCTATAATGCTGGTGAAATGAT
1 A-TCGGGCCTTCGAGCCTAGCAGGCTATAATGCTGGTGAAATGAT
* * * **
80911333 ATCGTGCCTTTGAGCCTAGCAGGCTATAATACCAGTGAAATGAT
1 ATCGGGCCTTCGAGCCTAGCAGGCTATAATGCTGGTGAAATGAT
*
80911377 ATCGAG-CTTCGAGCCTAGCAGGC
1 ATCGGGCCTTCGAGCCTAGCAGGC
80911400 GAAATGCCAA
Statistics
Matches: 139, Mismatches: 14, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
43 17 0.12
44 82 0.59
45 39 0.28
46 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (44 bp):
ATCGGGCCTTCGAGCCTAGCAGGCTATAATGCTGGTGAAATGAT
Found at i:80911346 original size:89 final size:89
Alignment explanation
Indices: 80911195--80911362 Score: 300
Period size: 89 Copynumber: 1.9 Consensus size: 89
80911185 TATCGTACGG
80911195 TACTAATCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCCTTTGAGCC
1 TACTAATCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCCTTTGAGCC
80911260 TAGCAGGCTATAATGCTGGTGAGA
66 TAGCAGGCTATAATGCTGGTGAGA
* * * *
80911284 TACTATTCGGGCCTTCGAGCCTAGTAGGCTATAATGCTGGTGAAATGATATCGTGCCTTTGAGCC
1 TACTAATCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCCTTTGAGCC
80911349 TAGCAGGCTATAAT
66 TAGCAGGCTATAAT
80911363 ACCAGTGAAA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
89 75 1.00
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (89 bp):
TACTAATCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCCTTTGAGCC
TAGCAGGCTATAATGCTGGTGAGA
Found at i:80918591 original size:36 final size:38
Alignment explanation
Indices: 80918532--80918680 Score: 198
Period size: 36 Copynumber: 4.0 Consensus size: 38
80918522 AGTGACAATA
80918532 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAA-
1 TCCGGA-TAAGA-CCGAAGGCATTTGTGCGAGATACTAAT
*
80918571 TCCGGATAAG-TCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGATAAGACCGAAGGCATTTGTGCGAGATACTAAT
*
80918608 TCCGGGTAAG-CCG-AGGCATTTGTGCGAGATACTAAT
1 TCCGGATAAGACCGAAGGCATTTGTGCGAGATACTAAT
* * * *
80918644 TCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGATAAGACCGAAGGCATTTGTGCGAGATACTAA
80918681 ATTTGCGTTA
Statistics
Matches: 101, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
36 56 0.55
37 14 0.14
38 25 0.25
39 6 0.06
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (38 bp):
TCCGGATAAGACCGAAGGCATTTGTGCGAGATACTAAT
Found at i:81000124 original size:39 final size:39
Alignment explanation
Indices: 81000018--81000191 Score: 264
Period size: 39 Copynumber: 4.5 Consensus size: 39
81000008 CGGATGATAA
* *
81000018 CCGGACTAAGATCCGAAGGCATTTGTGCTAGTGACTATAT
1 CCGGGCTAAG-TCCGAAGGCATTTGTGCTAGTTACTATAT
81000058 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
1 CCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTTACTATAT
81000098 CCGGGCTAAGTCCGAAGGCATTTGTGCTAGTTACTATAT
1 CCGGGCTAAGTCCGAAGGCATTTGTGCTAGTTACTATAT
*
81000137 CCGGGCTAAGTCCGAAGGCATTTGTG--AGTTGCTATAT
1 CCGGGCTAAGTCCGAAGGCATTTGTGCTAGTTACTATAT
*
81000174 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGT-CCGAAGG
81000192 TACTTGGGTT
Statistics
Matches: 128, Mismatches: 4, Indels: 7
0.92 0.03 0.05
Matches are distributed among these distances:
36 7 0.05
37 19 0.15
39 55 0.43
40 47 0.37
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (39 bp):
CCGGGCTAAGTCCGAAGGCATTTGTGCTAGTTACTATAT
Found at i:81001284 original size:24 final size:24
Alignment explanation
Indices: 81001252--81001299 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
81001242 AAGCTCTGTA
81001252 CAGGGAGATATCTAAGTCGTAATG
1 CAGGGAGATATCTAAGTCGTAATG
81001276 CAGGGAGATATCTAAGTCGTAATG
1 CAGGGAGATATCTAAGTCGTAATG
81001300 AATAAAGGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.25
Consensus pattern (24 bp):
CAGGGAGATATCTAAGTCGTAATG
Found at i:81004909 original size:24 final size:24
Alignment explanation
Indices: 81004881--81004929 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
81004871 ACACTTGTCT
81004881 GTTCTATCCGATAATGTGTTAGTA
1 GTTCTATCCGATAATGTGTTAGTA
81004905 GTTCTATCCGATAATGTGTTAGTA
1 GTTCTATCCGATAATGTGTTAGTA
81004929 G
1 G
81004930 CAAAATTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.24, C:0.12, G:0.22, T:0.41
Consensus pattern (24 bp):
GTTCTATCCGATAATGTGTTAGTA
Found at i:81008250 original size:39 final size:41
Alignment explanation
Indices: 81008151--81008327 Score: 260
Period size: 40 Copynumber: 4.5 Consensus size: 41
81008141 CGGATGATAA
81008151 CCGGACTAAGAT-CCGAAGGCATTTGTGCTAGTTACTATAT
1 CCGGACTAAGATCCCGAAGGCATTTGTGCTAGTTACTATAT
*
81008191 CCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGTTACTATA-
1 CCGGACTAAGATCCCGAAGGCATTTGTGCTAGTTACTATAT
81008230 CCGGACTAAGAT-CCGAAGGCATTTGTGCTAGTTACTATAT
1 CCGGACTAAGATCCCGAAGGCATTTGTGCTAGTTACTATAT
* * * *
81008270 CTGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGACTAAGATCCCGAAGGCATTTGTGCTAGTTACTATAT
81008310 CCGG-CTAA-ATCCCGAAGG
1 CCGGACTAAGATCCCGAAGG
81008328 TACTTGGGTT
Statistics
Matches: 125, Mismatches: 7, Indels: 11
0.87 0.05 0.08
Matches are distributed among these distances:
39 51 0.41
40 74 0.59
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.28
Consensus pattern (41 bp):
CCGGACTAAGATCCCGAAGGCATTTGTGCTAGTTACTATAT
Found at i:81008281 original size:79 final size:79
Alignment explanation
Indices: 81008150--81008327 Score: 297
Period size: 79 Copynumber: 2.3 Consensus size: 79
81008140 TCGGATGATA
81008150 ACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
1 ACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
*
81008215 GTGCTAGTTACTAT
66 GTGCGAGTTACTAT
*
81008229 ACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCTGGGCTAAGTCCCGAAGGCATTT
1 ACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
*
81008294 GTGCGAGTTGCTAT
66 GTGCGAGTTACTAT
81008308 ATCCGG-CTAA-ATCCCGAAGG
1 A-CCGGACTAAGAT-CCGAAGG
81008328 TACTTGGGTT
Statistics
Matches: 94, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
78 2 0.02
79 88 0.94
80 4 0.04
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.28
Consensus pattern (79 bp):
ACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGTTACTAT
Found at i:81011636 original size:19 final size:19
Alignment explanation
Indices: 81011612--81011649 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
81011602 ACATAAAAAT
81011612 TAAAGTTTCTAACTCTTCC
1 TAAAGTTTCTAACTCTTCC
* *
81011631 TAAAGTTTTTACCTCTTCC
1 TAAAGTTTCTAACTCTTCC
81011650 ATCACTGAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.26, G:0.05, T:0.45
Consensus pattern (19 bp):
TAAAGTTTCTAACTCTTCC
Found at i:81018293 original size:48 final size:48
Alignment explanation
Indices: 81018222--81018320 Score: 189
Period size: 48 Copynumber: 2.1 Consensus size: 48
81018212 CGTGGGCAAG
*
81018222 TAAGAAATTCAAATGAACCTTGACTATATACTTAAGGTTAAGGGTTCC
1 TAAGAAATTCAAATGAACCTTGACTATATACTTAAGGTTAAAGGTTCC
81018270 TAAGAAATTCAAATGAACCTTGACTATATACTTAAGGTTAAAGGTTCC
1 TAAGAAATTCAAATGAACCTTGACTATATACTTAAGGTTAAAGGTTCC
81018318 TAA
1 TAA
81018321 ACTCAAACTT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.31
Consensus pattern (48 bp):
TAAGAAATTCAAATGAACCTTGACTATATACTTAAGGTTAAAGGTTCC
Found at i:81020525 original size:39 final size:39
Alignment explanation
Indices: 81020469--81020726 Score: 347
Period size: 39 Copynumber: 6.6 Consensus size: 39
81020459 ATAATGAAGA
* *
81020469 ATTATATCCGGGTTAAGTCCCGAAGGAATTTGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGAATTCGTGCTGGT
81020508 ATTATATCCGGGCTAAGTCCCGAAGGAATTCGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGAATTCGTGCTGGT
* *
81020547 ATTATATCCGAGCTAAGTCCCGAAGGAATTCGTACTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGAATTCGTGCTGGT
* * * *
81020586 ATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCCGGC
1 ATTATATCCGGGCTAAGTCCCGAAGGAATTCGTGCTGGT
* * * *
81020625 GTTATATCCAGGCTAAGTACCGAAGGCATTCGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGAATTCGTGCTGGT
* * *
81020664 ATTATATCCGGGCTAAAGTCCCGCAGG-CTTTGTGCTGGT
1 ATTATATCCGGGCT-AAGTCCCGAAGGAATTCGTGCTGGT
81020703 ATTATATCCGGGCTTAAAGTCCCG
1 ATTATATCCGGGC-T-AAGTCCCG
81020727 CATGCTTTGT
Statistics
Matches: 195, Mismatches: 22, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
39 175 0.90
40 20 0.10
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (39 bp):
ATTATATCCGGGCTAAGTCCCGAAGGAATTCGTGCTGGT
Found at i:81023572 original size:18 final size:18
Alignment explanation
Indices: 81023549--81023584 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
81023539 GTAGATTTTA
*
81023549 GTATGTTGCATTTTGTTT
1 GTATGTTGCATTCTGTTT
81023567 GTATGTTGCATTCTGTTT
1 GTATGTTGCATTCTGTTT
81023585 ATACTTTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.11, C:0.08, G:0.22, T:0.58
Consensus pattern (18 bp):
GTATGTTGCATTCTGTTT
Found at i:81025271 original size:79 final size:79
Alignment explanation
Indices: 81025176--81025332 Score: 296
Period size: 79 Copynumber: 2.0 Consensus size: 79
81025166 TATGTTTTAA
81025176 GTAAGTTTCTTTAGTTTTACTTACATCCAATAAAATGTGCACATTGAGTCTTTTATTGACCTTAA
1 GTAAGTTTCTTTAGTTTTACTTACATCCAATAAAATGTGCACATTGAGTCTTTTATTGACCTTAA
*
81025241 TGGCTGAATAAGGT
66 GGGCTGAATAAGGT
*
81025255 GTAAGTTTCTTTAGTTTTCCTTACATCCAATAAAATGTGCACATTGAGTCTTTTATTGACCTTAA
1 GTAAGTTTCTTTAGTTTTACTTACATCCAATAAAATGTGCACATTGAGTCTTTTATTGACCTTAA
81025320 GGGCTGAATAAGG
66 GGGCTGAATAAGG
81025333 CCAAAAAGAG
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
79 76 1.00
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (79 bp):
GTAAGTTTCTTTAGTTTTACTTACATCCAATAAAATGTGCACATTGAGTCTTTTATTGACCTTAA
GGGCTGAATAAGGT
Found at i:81025307 original size:41 final size:41
Alignment explanation
Indices: 81025183--81025307 Score: 95
Period size: 41 Copynumber: 3.1 Consensus size: 41
81025173 TAAGTAAGTT
*
81025183 TCTTTAGTTTTACTTACATCCAATAAAATGTGCACATTGAG
1 TCTTTAGTTTTCCTTACATCCAATAAAATGTGCACATTGAG
** * * *
81025224 TCTTTTA-TTGACCTTA-ATGGC--TGAATAAGGTGTA-AGTT---
1 TC-TTTAGTTTTCCTTACAT-CCAAT-AA-AATGTGCACA-TTGAG
81025262 TCTTTAGTTTTCCTTACATCCAATAAAATGTGCACATTGAG
1 TCTTTAGTTTTCCTTACATCCAATAAAATGTGCACATTGAG
81025303 TCTTT
1 TCTTT
81025308 TATTGACCTT
Statistics
Matches: 60, Mismatches: 11, Indels: 26
0.62 0.11 0.27
Matches are distributed among these distances:
37 4 0.07
38 18 0.30
39 6 0.10
40 6 0.10
41 22 0.37
42 4 0.07
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (41 bp):
TCTTTAGTTTTCCTTACATCCAATAAAATGTGCACATTGAG
Found at i:81025637 original size:12 final size:12
Alignment explanation
Indices: 81025609--81025638 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
81025599 CCATACATGC
*
81025609 CCGTATACTAGG
1 CCGTGTACTAGG
81025621 CCGTGTACTAGG
1 CCGTGTACTAGG
81025633 CCGTGT
1 CCGTGT
81025639 CAAATCTGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.27, G:0.30, T:0.27
Consensus pattern (12 bp):
CCGTGTACTAGG
Found at i:81028153 original size:42 final size:43
Alignment explanation
Indices: 81028058--81028207 Score: 133
Period size: 43 Copynumber: 3.5 Consensus size: 43
81028048 CCAACATCCA
* * *
81028058 AGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCC
1 AGACATGGTCTTACATGAAATCAAATATCGATGCCAATGTCCC
* * * * *
81028101 AAACAGGGTCTTACATGAAATCATATA-CTATGCCAATGTCTC
1 AGACATGGTCTTACATGAAATCAAATATCGATGCCAATGTCCC
* * * *
81028143 AGACATGGTCTTACACGTAAATCTCAA-ATCGTTGCCAACGTCCC
1 AGACATGGTCTTACATG-AAATC-AAATATCGATGCCAATGTCCC
* * *
81028187 AGACGTGGTGTTACACGAAAT
1 AGACATGGTCTTACATGAAAT
81028208 TTCATATCAA
Statistics
Matches: 85, Mismatches: 19, Indels: 6
0.77 0.17 0.05
Matches are distributed among these distances:
42 26 0.31
43 32 0.38
44 27 0.32
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (43 bp):
AGACATGGTCTTACATGAAATCAAATATCGATGCCAATGTCCC
Found at i:81028325 original size:25 final size:25
Alignment explanation
Indices: 81028297--81028346 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
81028287 ATTGATTCAT
81028297 GCTCGTAATAAATCATTCCATGCTA
1 GCTCGTAATAAATCATTCCATGCTA
81028322 GCTCGTAATAAATCATTCCATGCTA
1 GCTCGTAATAAATCATTCCATGCTA
81028347 TATTCAATTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.32
Consensus pattern (25 bp):
GCTCGTAATAAATCATTCCATGCTA
Found at i:81032858 original size:44 final size:42
Alignment explanation
Indices: 81032709--81032858 Score: 117
Period size: 43 Copynumber: 3.5 Consensus size: 42
81032699 TCGTAAACTC
* * * * *
81032709 ATACAATGCCAACGTCCCAGA-TGAGGTCTTACATGTAATCAA
1 ATACGATGCCAACGTCCCAGACAG-GGTCTTACACGAAACCAA
* * *
81032751 ATATCGATGCC-GCTATCCCAGACAGGGTCTTACACGAAACCAT
1 ATA-CGATGCCAAC-GTCCCAGACAGGGTCTTACACGAAACCAA
* * * *
81032794 ATACGATGCTAATGTCCCAGACATGGTCTTACTCGTAAATCTCAA
1 ATACGATGCCAACGTCCCAGACAGGGTCTTACACG-AAA-C-CAA
81032839 AT-CGATGCCAACGTCCCAGA
1 ATACGATGCCAACGTCCCAGA
81032859 TGTGGTTTTA
Statistics
Matches: 84, Mismatches: 17, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
42 29 0.35
43 33 0.39
44 18 0.21
45 4 0.05
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.23
Consensus pattern (42 bp):
ATACGATGCCAACGTCCCAGACAGGGTCTTACACGAAACCAA
Found at i:81033988 original size:13 final size:13
Alignment explanation
Indices: 81033970--81033994 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81033960 ACAAAAAATA
81033970 AAATTTTCACACG
1 AAATTTTCACACG
81033983 AAATTTTCACAC
1 AAATTTTCACAC
81033995 ATATCACATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:81034314 original size:72 final size:72
Alignment explanation
Indices: 81034197--81034338 Score: 230
Period size: 72 Copynumber: 2.0 Consensus size: 72
81034187 GTGAGGTCAG
* * *
81034197 AAGATAAGTAATTCTTGCTTACTTGTTATGTTAGTCGAAGATCCTATTAGGGTAGCGACTAGTTG
1 AAGATAAGTAATTCTTGCTTACTCGTTATGCTAGTCGAAGATCCTACTAGGGTAGCGACTAGTTG
81034262 ATTGACA
66 ATTGACA
* * *
81034269 AAGATTAGTAATTCTTGTTTACTCGTTATGCTAGTGGAAGATCCTACTAGGGTAGCGACTAGTTG
1 AAGATAAGTAATTCTTGCTTACTCGTTATGCTAGTCGAAGATCCTACTAGGGTAGCGACTAGTTG
81034334 ATTGA
66 ATTGA
81034339 TGAAGAACTT
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
72 64 1.00
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.36
Consensus pattern (72 bp):
AAGATAAGTAATTCTTGCTTACTCGTTATGCTAGTCGAAGATCCTACTAGGGTAGCGACTAGTTG
ATTGACA
Found at i:81043243 original size:17 final size:17
Alignment explanation
Indices: 81043223--81043257 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
81043213 GCACGATGAG
81043223 AATGTATATTGATTATC
1 AATGTATATTGATTATC
81043240 AATGTATATTGATTATC
1 AATGTATATTGATTATC
81043257 A
1 A
81043258 TCAGTTGAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.37, C:0.06, G:0.11, T:0.46
Consensus pattern (17 bp):
AATGTATATTGATTATC
Found at i:81045059 original size:42 final size:43
Alignment explanation
Indices: 81044948--81045104 Score: 146
Period size: 43 Copynumber: 3.7 Consensus size: 43
81044938 AATTAAGCAA
*
81044948 TCTGAGCTCGTTGAGTGGTCCAAGTTCATGATATGTATGAGAT
1 TCTGAGCTCGTTGAGTGGTCCAAGTTCATGATATGTATGACAT
* * *
81044991 TCTGAACTTGTTGAGTGGTCCAAGTTCGTGAGATATGTA-G-CAT
1 TCTGAGCTCGTTGAGTGGTCCAAGTTCAT--GATATGTATGACAT
* *
81045034 TC-GAGCTCGTTGAGTGGTCCGAGTTCAT--TATGGATGCGAGCA-
1 TCTGAGCTCGTTGAGTGGTCCAAGTTCATGATATGTAT--GA-CAT
* * *
81045076 CCTAAGCTCGTTGAGTGGTCCGAGTTCAT
1 TCTGAGCTCGTTGAGTGGTCCAAGTTCAT
81045105 TGTGGATGCG
Statistics
Matches: 95, Mismatches: 11, Indels: 16
0.78 0.09 0.13
Matches are distributed among these distances:
38 5 0.05
41 1 0.01
42 23 0.24
43 57 0.60
44 1 0.01
45 8 0.08
ACGTcount: A:0.21, C:0.17, G:0.29, T:0.32
Consensus pattern (43 bp):
TCTGAGCTCGTTGAGTGGTCCAAGTTCATGATATGTATGACAT
Found at i:81046780 original size:46 final size:46
Alignment explanation
Indices: 81046713--81046838 Score: 191
Period size: 46 Copynumber: 2.7 Consensus size: 46
81046703 AACCCGCCCC
* * * *
81046713 TAAGTGAACTC-AGACTCAACTCAACGAGCTCGGGCGTTTGCATCCA
1 TAAGTGAACTCGA-ACTCAACTCAACGAGTTCGGACATTCGCATCCA
81046759 TAAGTGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
81046805 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGAACTCAACTCAACGAGTTCGGA
81046839 TGCTCAACCA
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
46 73 0.99
47 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:81047293 original size:30 final size:30
Alignment explanation
Indices: 81047259--81047318 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
81047249 ATTTAATACG
81047259 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
81047289 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
81047319 GGCTCAGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:81053900 original size:21 final size:21
Alignment explanation
Indices: 81053874--81053919 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
81053864 GGCATTCTAA
81053874 GAAATACGTGATTGAATGAAT
1 GAAATACGTGATTGAATGAAT
81053895 GAAATACGTGATTGAATGAAT
1 GAAATACGTGATTGAATGAAT
81053916 GAAA
1 GAAA
81053920 AACCGATTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.46, C:0.04, G:0.24, T:0.26
Consensus pattern (21 bp):
GAAATACGTGATTGAATGAAT
Found at i:81055804 original size:21 final size:23
Alignment explanation
Indices: 81055766--81055810 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
81055756 GTTAAGTTTA
*
81055766 TTAATTTTTAATATAA-TTAATT
1 TTAATTTTTAATACAATTTAATT
*
81055788 TTAA-TTTTAATCCAATTTAATT
1 TTAATTTTTAATACAATTTAATT
81055810 T
1 T
81055811 GGGCTAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (23 bp):
TTAATTTTTAATACAATTTAATT
Found at i:81058476 original size:13 final size:13
Alignment explanation
Indices: 81058460--81058484 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81058450 GCAAAAATTG
81058460 AGGAAGAAAAGAA
1 AGGAAGAAAAGAA
81058473 AGGAAGAAAAGA
1 AGGAAGAAAAGA
81058485 GAAAGAAACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (13 bp):
AGGAAGAAAAGAA
Found at i:81061527 original size:32 final size:32
Alignment explanation
Indices: 81061486--81061548 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
81061476 CACGAGTTAC
*
81061486 AGCCATCAGTAGCGGTAATTTGATCGACACAA
1 AGCCATCAGTAGCGGTAATATGATCGACACAA
* *
81061518 AGCCATCAGTAGCTGTAATATGATCGGCACA
1 AGCCATCAGTAGCGGTAATATGATCGACACA
81061549 CAACCATGGG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.22
Consensus pattern (32 bp):
AGCCATCAGTAGCGGTAATATGATCGACACAA
Found at i:81062107 original size:54 final size:53
Alignment explanation
Indices: 81062041--81062181 Score: 149
Period size: 54 Copynumber: 2.6 Consensus size: 53
81062031 AAACAGTCAT
* * *
81062041 TTTTCCATACAGGGGTATTTCAAAAATTTTACACTACAAGGGTAT-TTCGGTAA
1 TTTTACATACAGGGGTATTTCAATAATTTTACACAACAAGGGTATGTT-GGTAA
* * * * **
81062094 TTTTATAGTACAGGGGTATTTTACTAATTTTACAGAACGGGGGTATGTTGGTAA
1 TTTTACA-TACAGGGGTATTTCAATAATTTTACACAACAAGGGTATGTTGGTAA
* *
81062148 TTTTACAAATCAGGGGTATTTCGATAATTTTACA
1 TTTTACATA-CAGGGGTATTTCAATAATTTTACA
81062182 AATTAGGGTT
Statistics
Matches: 71, Mismatches: 14, Indels: 5
0.79 0.16 0.06
Matches are distributed among these distances:
53 6 0.08
54 63 0.89
55 2 0.03
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.38
Consensus pattern (53 bp):
TTTTACATACAGGGGTATTTCAATAATTTTACACAACAAGGGTATGTTGGTAA
Found at i:81062121 original size:27 final size:27
Alignment explanation
Indices: 81062048--81062181 Score: 110
Period size: 27 Copynumber: 5.0 Consensus size: 27
81062038 CATTTTTCCA
* *
81062048 TACAGGGGTATTTCAAAAATTTTACAC
1 TACAGGGGTATTTCAATAATTTTACAG
* ** *
81062075 TACAAGGGTATTTCGGTAATTTTATAG
1 TACAGGGGTATTTCAATAATTTTACAG
* *
81062102 TACAGGGGTATTTTACTAATTTTACAG
1 TACAGGGGTATTTCAATAATTTTACAG
* * **
81062129 AACGGGGGTATGTT-GGTAATTTTACA-
1 TACAGGGGTAT-TTCAATAATTTTACAG
* *
81062155 AATCAGGGGTATTTCGATAATTTTACA
1 TA-CAGGGGTATTTCAATAATTTTACA
81062182 AATTAGGGTT
Statistics
Matches: 87, Mismatches: 17, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
26 4 0.05
27 81 0.93
28 2 0.02
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.37
Consensus pattern (27 bp):
TACAGGGGTATTTCAATAATTTTACAG
Found at i:81071325 original size:27 final size:26
Alignment explanation
Indices: 81071295--81071349 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
81071285 ATATAGTCGA
*
81071295 CACAGAGTCATCAATAAATATGATAAG
1 CACAGAGCCA-CAATAAATATGATAAG
* * *
81071322 CACATAGCCACGATAAATATGATTAG
1 CACAGAGCCACAATAAATATGATAAG
81071348 CA
1 CA
81071350 TAAGTAAGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 16 0.67
27 8 0.33
ACGTcount: A:0.45, C:0.18, G:0.15, T:0.22
Consensus pattern (26 bp):
CACAGAGCCACAATAAATATGATAAG
Found at i:81071793 original size:27 final size:27
Alignment explanation
Indices: 81071774--81071877 Score: 163
Period size: 27 Copynumber: 3.9 Consensus size: 27
81071764 TTTGCCCTAT
81071774 AGGGGTATTTCGGTAATTTTACACTAC
1 AGGGGTATTTCGGTAATTTTACACTAC
* ** *
81071801 AAGGGTATTTTAGTAATTTTACACTAT
1 AGGGGTATTTCGGTAATTTTACACTAC
81071828 AGGGGTATTTCGGTAATTTTACACTAC
1 AGGGGTATTTCGGTAATTTTACACTAC
*
81071855 AGGGGTATTTTGGTAATTTTACA
1 AGGGGTATTTCGGTAATTTTACA
81071878 AACCAAGGTC
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (27 bp):
AGGGGTATTTCGGTAATTTTACACTAC
Found at i:81071828 original size:54 final size:54
Alignment explanation
Indices: 81071770--81071877 Score: 198
Period size: 54 Copynumber: 2.0 Consensus size: 54
81071760 TCATTTTGCC
81071770 CTATAGGGGTATTTCGGTAATTTTACACTACAAGGGTATTTTAGTAATTTTACA
1 CTATAGGGGTATTTCGGTAATTTTACACTACAAGGGTATTTTAGTAATTTTACA
* *
81071824 CTATAGGGGTATTTCGGTAATTTTACACTACAGGGGTATTTTGGTAATTTTACA
1 CTATAGGGGTATTTCGGTAATTTTACACTACAAGGGTATTTTAGTAATTTTACA
81071878 AACCAAGGTC
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.28, C:0.11, G:0.20, T:0.41
Consensus pattern (54 bp):
CTATAGGGGTATTTCGGTAATTTTACACTACAAGGGTATTTTAGTAATTTTACA
Found at i:81073051 original size:14 final size:14
Alignment explanation
Indices: 81073032--81073079 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
81073022 AAGAAACACA
81073032 AGAGAAAAGGAAAC
1 AGAGAAAAGGAAAC
* *
81073046 AGAGAATTAGGACA-
1 AGAGAA-AAGGAAAC
81073060 AGAGAAAAGGAAAC
1 AGAGAAAAGGAAAC
81073074 AGAGAA
1 AGAGAA
81073080 TTAGGCACAC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
13 5 0.18
14 18 0.64
15 5 0.18
ACGTcount: A:0.60, C:0.06, G:0.29, T:0.04
Consensus pattern (14 bp):
AGAGAAAAGGAAAC
Found at i:81073064 original size:28 final size:28
Alignment explanation
Indices: 81073029--81073084 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
81073019 ATCAAGAAAC
81073029 ACAAGAGAAAAGGAAACAGAGAATTAGG
1 ACAAGAGAAAAGGAAACAGAGAATTAGG
81073057 ACAAGAGAAAAGGAAACAGAGAATTAGG
1 ACAAGAGAAAAGGAAACAGAGAATTAGG
81073085 CACACAAGGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.57, C:0.07, G:0.29, T:0.07
Consensus pattern (28 bp):
ACAAGAGAAAAGGAAACAGAGAATTAGG
Found at i:81076362 original size:47 final size:47
Alignment explanation
Indices: 81076293--81076410 Score: 218
Period size: 47 Copynumber: 2.5 Consensus size: 47
81076283 TTTTATGTGT
*
81076293 ATATATGCGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
*
81076340 ATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
81076387 ATATATGTGATAAGGCCGAATGGC
1 ATATATGTGATAAGGCCGAATGGC
81076411 TAAGGTGAAA
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.35, C:0.14, G:0.26, T:0.25
Consensus pattern (47 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
Found at i:81076671 original size:37 final size:37
Alignment explanation
Indices: 81076621--81076728 Score: 171
Period size: 37 Copynumber: 2.9 Consensus size: 37
81076611 GGAAATATAT
81076621 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
81076658 TCCGGGTAAGACCCGATGACTACATGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
81076695 TCCAGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
81076729 TCGTCTGAGC
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:81079989 original size:48 final size:48
Alignment explanation
Indices: 81079860--81080032 Score: 186
Period size: 48 Copynumber: 3.6 Consensus size: 48
81079850 ATTCATGAGA
* ** * * *
81079860 GCCAGTGTAAGACCATATCTGGGACATGGCATCAGTGTGGATATGAGA
1 GCCAGTGTAAGACCATATCTGGGACATGGCATCGGCATCGATATGTGT
* ** *
81079908 GCCAGTGTAAGACCATGTCCAGGACATGGCATCGGCATTGATATGTGT
1 GCCAGTGTAAGACCATATCTGGGACATGGCATCGGCATCGATATGTGT
* * *
81079956 GCCAGTGTAAGACCATATCTGGGATATGGCATCGGCCTCGGTATGTGAT
1 GCCAGTGTAAGACCATATCTGGGACATGGCATCGGCATCGATATGTG-T
** *
81080005 TTCA-TGTAAGACCATATCTGGGATATGG
1 GCCAGTGTAAGACCATATCTGGGACATGG
81080033 TGTTGATATG
Statistics
Matches: 106, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
48 103 0.97
49 3 0.03
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
GCCAGTGTAAGACCATATCTGGGACATGGCATCGGCATCGATATGTGT
Found at i:81081756 original size:28 final size:28
Alignment explanation
Indices: 81081716--81081773 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 28
81081706 AATTTCACAT
* *
81081716 ACCTGTATTTGGCCCATTAAGCCCAATC
1 ACCTATATATGGCCCATTAAGCCCAATC
* *
81081744 ACCTATATATGGCCCATTAGGCCCAGTC
1 ACCTATATATGGCCCATTAAGCCCAATC
81081772 AC
1 AC
81081774 ATTCATATTC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.26, C:0.33, G:0.16, T:0.26
Consensus pattern (28 bp):
ACCTATATATGGCCCATTAAGCCCAATC
Found at i:81082005 original size:8 final size:8
Alignment explanation
Indices: 81081992--81082062 Score: 142
Period size: 8 Copynumber: 8.9 Consensus size: 8
81081982 ACTTTTGGCT
81081992 TTTCGGCA
1 TTTCGGCA
81082000 TTTCGGCA
1 TTTCGGCA
81082008 TTTCGGCA
1 TTTCGGCA
81082016 TTTCGGCA
1 TTTCGGCA
81082024 TTTCGGCA
1 TTTCGGCA
81082032 TTTCGGCA
1 TTTCGGCA
81082040 TTTCGGCA
1 TTTCGGCA
81082048 TTTCGGCA
1 TTTCGGCA
81082056 TTTCGGC
1 TTTCGGC
81082063 TTTTGCTGAT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 63 1.00
ACGTcount: A:0.11, C:0.25, G:0.25, T:0.38
Consensus pattern (8 bp):
TTTCGGCA
Found at i:81083362 original size:17 final size:16
Alignment explanation
Indices: 81083329--81083360 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
81083319 AAGTTCAGGA
*
81083329 TTTCAGGATTTTTGGG
1 TTTCAAGATTTTTGGG
81083345 TTTCAAGATTTTTGGG
1 TTTCAAGATTTTTGGG
81083361 GTGTTACAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.06, G:0.28, T:0.50
Consensus pattern (16 bp):
TTTCAAGATTTTTGGG
Found at i:81085132 original size:25 final size:25
Alignment explanation
Indices: 81085101--81085163 Score: 99
Period size: 25 Copynumber: 2.5 Consensus size: 25
81085091 AATCAAAATG
*
81085101 AGAATCAGAATCAGGTGACAGAATC
1 AGAATCAAAATCAGGTGACAGAATC
* *
81085126 AGAATCAAAATTAGGTGACAGAATT
1 AGAATCAAAATCAGGTGACAGAATC
81085151 AGAATCAAAATCA
1 AGAATCAAAATCA
81085164 AAATCAGTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.49, C:0.13, G:0.19, T:0.19
Consensus pattern (25 bp):
AGAATCAAAATCAGGTGACAGAATC
Done.