Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 245 of 349
Found at i:81085186 original size:31 final size:31
Alignment explanation
Indices: 81085089--81085194 Score: 101
Period size: 31 Copynumber: 3.4 Consensus size: 31
81085079 TATCAGAACT
* * * *
81085089 AGAATCAAAATGAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAAAATCAGTATCAGGTAAC
* * *
81085120 AGAATCAGAATCAAAATTAGGTGA-CA-G-AATT
1 AGAATCAAAATCAAAATCA-GT-ATCAGGTAA-C
81085151 AGAATCAAAATCAAAATCAGTATCAGGTAAC
1 AGAATCAAAATCAAAATCAGTATCAGGTAAC
81085182 AGAATCAAAATCA
1 AGAATCAAAATCA
81085195 GAATGTGAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
29 1 0.02
30 5 0.08
31 47 0.80
32 5 0.08
33 1 0.02
ACGTcount: A:0.51, C:0.13, G:0.17, T:0.19
Consensus pattern (31 bp):
AGAATCAAAATCAAAATCAGTATCAGGTAAC
Found at i:81085365 original size:27 final size:26
Alignment explanation
Indices: 81085317--81085376 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
81085307 GCGAGGCTGC
*
81085317 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * * *
81085344 CAGATATTGTGGCTAGGCCACCAGAG
1 CAGATATTGTGACGAAGCCACCAGAA
81085370 CAGATAT
1 CAGATAT
81085377 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:81085732 original size:27 final size:27
Alignment explanation
Indices: 81085702--81086014 Score: 358
Period size: 27 Copynumber: 11.6 Consensus size: 27
81085692 TAACACCCTA
* *
81085702 AGGGTAAAATGGTAATTTTATAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
*
81085729 AGGGTAAAACGATAATTCTATAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
* *
81085756 AGGGTAAAACAGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
* * *
81085783 AGGGTAAAATGGTAATTTTATAAATTG
1 AGGGTAAAACGGTAATTCTATAAATCG
** *
81085810 AGGGTAAAATAGTAATTCTGT-AATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
*
81085836 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
* * *
81085863 AAGGTAAAACGGTAATTTTGTAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
* * * * *
81085890 AGGGTAAAATGATAATTTTGTAAATTG
1 AGGGTAAAACGGTAATTCTATAAATCG
* * *
81085917 AGGGTAAAACAGTAATTCTGTAAATCA
1 AGGGTAAAACGGTAATTCTATAAATCG
* * *
81085944 AGGGTAAAATGATAATTCTATAAATCA
1 AGGGTAAAACGGTAATTCTATAAATCG
* *
81085971 AGGGTAAAATGGTAATTCTATAAATCA
1 AGGGTAAAACGGTAATTCTATAAATCG
*
81085998 AGGGTAAAACGATAATT
1 AGGGTAAAACGGTAATT
81086015 TTACAAGTCG
Statistics
Matches: 249, Mismatches: 36, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
26 23 0.09
27 226 0.91
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.30
Consensus pattern (27 bp):
AGGGTAAAACGGTAATTCTATAAATCG
Found at i:81085771 original size:54 final size:54
Alignment explanation
Indices: 81085702--81086014 Score: 394
Period size: 54 Copynumber: 5.8 Consensus size: 54
81085692 TAACACCCTA
** * *
81085702 AGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAATCG
1 AGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATCG
* * * *
81085756 AGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTATAAATTG
1 AGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATCG
* * *
81085810 AGGGTAAAATAGTAATTCTGT-AATCGAGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATCG
* * * * * * *
81085863 AAGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGATAATTTTGTAAATTG
1 AGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATCG
* * *
81085917 AGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATGATAATTCTATAAATCA
1 AGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATCG
** * *
81085971 AGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAACGATAATT
1 AGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGATAATT
81086015 TTACAAGTCG
Statistics
Matches: 225, Mismatches: 33, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
53 45 0.20
54 180 0.80
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.30
Consensus pattern (54 bp):
AGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATCG
Found at i:81085815 original size:81 final size:81
Alignment explanation
Indices: 81085702--81086007 Score: 445
Period size: 81 Copynumber: 3.8 Consensus size: 81
81085692 TAACACCCTA
*
81085702 AGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAACA
1 AGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAATGATAATTCTATAAATCGAGGGTAAAACA
81085767 GTAATTCTGTAAATCG
66 GTAATTCTGTAAATCG
* *
81085783 AGGGTAAAATGGTAATTTTATAAATTGAGGGTAAAAT-AGTAATTCTGT-AATCGAGGGTAAAAC
1 AGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAATGA-TAATTCTATAAATCGAGGGTAAAAC
*
81085846 GGTAATTCTGTAAATCG
65 AGTAATTCTGTAAATCG
* * * * * *
81085863 AAGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGATAATTTTGTAAATTGAGGGTAAAACA
1 AGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAATGATAATTCTATAAATCGAGGGTAAAACA
*
81085928 GTAATTCTGTAAATCA
66 GTAATTCTGTAAATCG
* * * * *
81085944 AGGGTAAAATGATAATTCTATAAATCAAGGGTAAAATGGTAATTCTATAAATCAAGGGTAAAAC
1 AGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAATGATAATTCTATAAATCGAGGGTAAAAC
81086008 GATAATTTTA
Statistics
Matches: 199, Mismatches: 23, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
80 73 0.37
81 126 0.63
ACGTcount: A:0.42, C:0.07, G:0.21, T:0.29
Consensus pattern (81 bp):
AGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAATGATAATTCTATAAATCGAGGGTAAAACA
GTAATTCTGTAAATCG
Found at i:81086039 original size:27 final size:27
Alignment explanation
Indices: 81086009--81086101 Score: 98
Period size: 27 Copynumber: 3.4 Consensus size: 27
81085999 GGGTAAAACG
81086009 ATAATTTTACAAGTCGAAGGTATTTCA
1 ATAATTTTACAAGTCGAAGGTATTTCA
* *
81086036 ATAATTTTACAGGTCGAGGGTATTTCA
1 ATAATTTTACAAGTCGAAGGTATTTCA
* * * **
81086063 GTAATTTCACAAATC-AGAGGTATTTTG
1 ATAATTTTACAAGTCGA-AGGTATTTCA
*
81086090 GTAATTTTACAA
1 ATAATTTTACAA
81086102 ACCAGGGGTA
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
26 1 0.02
27 54 0.98
ACGTcount: A:0.34, C:0.11, G:0.17, T:0.38
Consensus pattern (27 bp):
ATAATTTTACAAGTCGAAGGTATTTCA
Found at i:81086102 original size:27 final size:27
Alignment explanation
Indices: 81086054--81086176 Score: 167
Period size: 27 Copynumber: 4.6 Consensus size: 27
81086044 ACAGGTCGAG
** * *
81086054 GGTATTTCAGTAATTTCACAAATCAGA
1 GGTATTTTGGTAATTTTACAAACCAGA
*
81086081 GGTATTTTGGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGA
*
81086108 GGTATTTTGGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGA
*
81086135 GGTATTTTGGTAATTTTATAAACCA-A
1 GGTATTTTGGTAATTTTACAAACCAGA
81086161 TGGTATTTTGGTAATT
1 -GGTATTTTGGTAATT
81086177 CTACCCTATA
Statistics
Matches: 88, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 88 1.00
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACCAGA
Found at i:81086202 original size:54 final size:54
Alignment explanation
Indices: 81086090--81086203 Score: 122
Period size: 54 Copynumber: 2.1 Consensus size: 54
81086080 AGGTATTTTG
* * * **
81086090 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTGGTAATTCTACAAACCAGGGGCATTTCA
* * ** *
81086144 GTAATTTTATAAACCAATGGTATTTTGGTAATTCTACCCTA-TAGGGGCATTTCA
1 GTAATTTTACAAACCAAGGGTATTTTGGTAATTCTA-CAAACCAGGGGCATTTCA
81086198 GTAATT
1 GTAATT
81086204 CTACTCTACA
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
54 47 0.96
55 2 0.04
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.39
Consensus pattern (54 bp):
GTAATTTTACAAACCAAGGGTATTTTGGTAATTCTACAAACCAGGGGCATTTCA
Found at i:81086222 original size:27 final size:27
Alignment explanation
Indices: 81086162--81086240 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 27
81086152 ATAAACCAAT
** * *
81086162 GGTATTTTGGTAATTCTACCCTATAGG
1 GGTATTTCAGTAATTCTACCCTACAAG
* *
81086189 GGCATTTCAGTAATTCTACTCTACAAG
1 GGTATTTCAGTAATTCTACCCTACAAG
* *
81086216 GGTATTTCAGTAATGCTAGCCTACA
1 GGTATTTCAGTAATTCTACCCTACA
81086241 GATATGAGAT
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTATTTCAGTAATTCTACCCTACAAG
Found at i:81089436 original size:18 final size:18
Alignment explanation
Indices: 81089413--81089447 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
81089403 CAAAAATAAG
*
81089413 AAGCATCAAAATGGTTTC
1 AAGCATCAAAATAGTTTC
*
81089431 AAGCATGAAAATAGTTT
1 AAGCATCAAAATAGTTT
81089448 GGCAAATCAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.11, G:0.17, T:0.29
Consensus pattern (18 bp):
AAGCATCAAAATAGTTTC
Found at i:81093035 original size:9 final size:9
Alignment explanation
Indices: 81093021--81093079 Score: 84
Period size: 9 Copynumber: 6.6 Consensus size: 9
81093011 ATAAGTACAA
81093021 AATTAACCG
1 AATTAACCG
81093030 AATTAACCG
1 AATTAACCG
81093039 AATT-ACCTG
1 AATTAACC-G
* *
81093048 AATTACCCA
1 AATTAACCG
81093057 AATTAACCG
1 AATTAACCG
81093066 AATTAACCG
1 AATTAACCG
81093075 AATTA
1 AATTA
81093080 TTTGTATAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
8 3 0.07
9 39 0.89
10 2 0.05
ACGTcount: A:0.44, C:0.22, G:0.08, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:81095690 original size:28 final size:28
Alignment explanation
Indices: 81095627--81095780 Score: 247
Period size: 28 Copynumber: 5.5 Consensus size: 28
81095617 ATATTAAGTC
** *
81095627 CGCACACTCGGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
81095654 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
81095682 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
81095710 CGCACACTTAGTGCTACCTAATCAAATT
1 CGCACACTTAGTGCTACATAATCAAACT
81095738 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
81095766 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
81095781 GTACAATTTA
Statistics
Matches: 119, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
27 21 0.18
28 98 0.82
ACGTcount: A:0.32, C:0.29, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:81113429 original size:57 final size:58
Alignment explanation
Indices: 81113308--81113449 Score: 166
Period size: 57 Copynumber: 2.5 Consensus size: 58
81113298 CACTACAGAA
* * *
81113308 AGGATTTAGCCTAGACTGGTAATCCTGATATAAGCCCTCTTGAGCATATGTTAAAGAT
1 AGGATTTAGCCTGGACAGGTAATCCTGATATAAGCCCTCTTGAGCATATGTTAAACAT
* *
81113366 AGGATTTAGCCTGGACAGGTAATCCTGAT-TAAG-CTTTTATGAGCATATGTTGGAAACA-
1 AGGATTTAGCCTGGACAGGTAATCCTGATATAAGCCCTCT-TGAGCATATGTT--AAACAT
* *
81113424 A-GATTTAGCTTGGACAAGTAATCCTG
1 AGGATTTAGCCTGGACAGGTAATCCTG
81113450 TTATTTGATA
Statistics
Matches: 74, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
56 3 0.04
57 39 0.53
58 28 0.38
59 4 0.05
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (58 bp):
AGGATTTAGCCTGGACAGGTAATCCTGATATAAGCCCTCTTGAGCATATGTTAAACAT
Found at i:81114309 original size:22 final size:22
Alignment explanation
Indices: 81114284--81114327 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
81114274 CACAACTTAG
*
81114284 TACATGGGCATGTTGTTAGGCC
1 TACATGGGCATGTTATTAGGCC
**
81114306 TACATGGGTGTGTTATTAGGCC
1 TACATGGGCATGTTATTAGGCC
81114328 GTGTGTCCTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.18, C:0.16, G:0.32, T:0.34
Consensus pattern (22 bp):
TACATGGGCATGTTATTAGGCC
Found at i:81115666 original size:18 final size:19
Alignment explanation
Indices: 81115643--81115681 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
81115633 AAGGATTAAG
81115643 AATATTCTG-TTTTTGA-AA
1 AATATT-TGATTTTTGATAA
81115661 AATATTTGATTTTTGATAA
1 AATATTTGATTTTTGATAA
81115680 AA
1 AA
81115682 AAAATCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 2 0.11
18 13 0.68
19 4 0.21
ACGTcount: A:0.38, C:0.03, G:0.10, T:0.49
Consensus pattern (19 bp):
AATATTTGATTTTTGATAA
Found at i:81117839 original size:50 final size:49
Alignment explanation
Indices: 81117778--81117955 Score: 175
Period size: 49 Copynumber: 3.7 Consensus size: 49
81117768 TGAGATGCGT
81117778 CAATGTAAGACCATGTCTGGGACATGGCATCGA-CGCGGAGATGTGAGAGG
1 CAATGTAAGACCATGTCTGGGACATGGCATCGACCGC-GA-ATGTGAGAGG
* * * * * * *
81117828 CAATGTAAGACCATGTCTAGGACATGGCATCGGCCGCTATTTTGATAGT
1 CAATGTAAGACCATGTCTGGGACATGGCATCGACCGCGAATGTGAGAGG
* ** *
81117877 CAATGTAAGACCATGTCTGGGACATGTCATCGA-CTTG-ATG-GATGAGC
1 CAATGTAAGACCATGTCTGGGACATGGCATCGACCGCGAATGTGA-GAGG
** *
81117924 CAATGTAAGACCATGTCTAAGACGTGGCATCG
1 CAATGTAAGACCATGTCTGGGACATGGCATCG
81117956 GTATTACACC
Statistics
Matches: 105, Mismatches: 21, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
46 2 0.02
47 31 0.30
48 1 0.01
49 36 0.34
50 32 0.30
51 3 0.03
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (49 bp):
CAATGTAAGACCATGTCTGGGACATGGCATCGACCGCGAATGTGAGAGG
Found at i:81117880 original size:99 final size:96
Alignment explanation
Indices: 81117776--81117956 Score: 265
Period size: 96 Copynumber: 1.9 Consensus size: 96
81117766 TATGAGATGC
*
81117776 GTCAATGTAAGACCATGTCTGGGACATGGCATCGACGCGGAGATGTGA-GAGGCAATGTAAGACC
1 GTCAATGTAAGACCATGTCTGGGACATGGCATCGA--C-GAGATG-GATGAGCCAATGTAAGACC
*
81117840 ATGTCTAGGACATGGCATCGGCCGCTATTTTGATA
62 ATGTCTAAGACATGGCATCGGCCGCTATTTTGATA
* **
81117875 GTCAATGTAAGACCATGTCTGGGACATGTCATCGACTTGATGGATGAGCCAATGTAAGACCATGT
1 GTCAATGTAAGACCATGTCTGGGACATGGCATCGACGAGATGGATGAGCCAATGTAAGACCATGT
*
81117940 CTAAGACGTGGCATCGG
66 CTAAGACATGGCATCGG
81117957 TATTACACCC
Statistics
Matches: 75, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
95 2 0.03
96 38 0.51
97 1 0.01
99 34 0.45
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (96 bp):
GTCAATGTAAGACCATGTCTGGGACATGGCATCGACGAGATGGATGAGCCAATGTAAGACCATGT
CTAAGACATGGCATCGGCCGCTATTTTGATA
Found at i:81125626 original size:48 final size:46
Alignment explanation
Indices: 81125560--81125680 Score: 136
Period size: 48 Copynumber: 2.6 Consensus size: 46
81125550 AAGATGTGAG
* * *
81125560 AGCCTGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTCTATTTCGAT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACCTC-A--TCGAT
* * * *
81125609 -GTCAGTGTAAGACCATGTTTGGGACATGGCATCAACTTCATGGAT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACCTCATCGAT
81125654 GAGCCAGTGTAAGACCATGTCTGGGAC
1 -AGCCAGTGTAAGACCATGTCTGGGAC
81125681 GTAGCATCGG
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
45 4 0.07
47 24 0.39
48 33 0.54
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (46 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACCTCATCGAT
Found at i:81134309 original size:135 final size:135
Alignment explanation
Indices: 81134067--81134340 Score: 390
Period size: 135 Copynumber: 2.0 Consensus size: 135
81134057 GTACATACAC
**
81134067 ATTTTGTGACACCCCTAATCTGACCCTAGTCGAAAAGTGGTTTCGGGACCACGAAACCGAGTTTT
1 ATTTTGTGACACCCCTAATCTGACCCTAGTCGAAAAGTGGTTTCGGGACCACGAAACCGAGTCCT
* * *
81134132 ATAAATAATTGAAAGTTATATTCTATGTTCATGAGGTGAGTAAATGCATGTGTAAAAATTTCAAG
66 ATAAATAATTAAAAGTTATATTCCATGTTCATAAGGTGAGTAAATGCATGTGTAAAAATTTCAAG
81134197 CATTA
131 CATTA
* * *
81134202 ATTTTGTGACAGCCCTAAAT-TGACCGTAGTCGGAAAGTGGTTTCGGGACCACGAAACCGAGTCC
1 ATTTTGTGACACCCCT-AATCTGACCCTAGTCGAAAAGTGGTTTCGGGACCACGAAACCGAGTCC
* * * * *
81134266 TATAAGA-AATTAAAAGTTATATTCCGTGTTTATAATGTGAGTAAATGCATGTGTGAAAGTTTCA
65 TATAA-ATAATTAAAAGTTATATTCCATGTTCATAAGGTGAGTAAATGCATGTGTAAAAATTTCA
*
81134330 TGCATTA
129 AGCATTA
81134337 ATTT
1 ATTT
81134341 GATCATTTTT
Statistics
Matches: 123, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
135 119 0.97
136 4 0.03
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.32
Consensus pattern (135 bp):
ATTTTGTGACACCCCTAATCTGACCCTAGTCGAAAAGTGGTTTCGGGACCACGAAACCGAGTCCT
ATAAATAATTAAAAGTTATATTCCATGTTCATAAGGTGAGTAAATGCATGTGTAAAAATTTCAAG
CATTA
Found at i:81136572 original size:48 final size:48
Alignment explanation
Indices: 81136503--81136895 Score: 642
Period size: 48 Copynumber: 8.1 Consensus size: 48
81136493 CAAGATAAAT
*
81136503 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
81136551 ATATGGATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
81136599 ACATGTATGGGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
81136647 ACATGTATGGGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
81136695 ACATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
81136743 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * *
81136791 ATATATATATATGATATGTATATGTGGTTAAGCCGAATGGCTAGTGTGAA
1 ATATGTAT-GA-GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
81136841 ATATGTATGAGATACGTATATGTGGTAAAGCCGAAGGGCTAGTGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
81136889 ATATGTA
1 ATATGTA
81136896 GGAAATGTGT
Statistics
Matches: 327, Mismatches: 16, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
48 282 0.86
49 2 0.01
50 43 0.13
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:81137150 original size:37 final size:37
Alignment explanation
Indices: 81137042--81137150 Score: 164
Period size: 37 Copynumber: 2.9 Consensus size: 37
81137032 GGAAATATAT
* *
81137042 TCCGGGTAAGACCCGATGACTACGCGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
81137079 TCCTGGTAAGACCCGATGACTGCGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
81137116 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
81137151 CATCTGAGCT
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:81140607 original size:48 final size:48
Alignment explanation
Indices: 81140540--81140713 Score: 262
Period size: 48 Copynumber: 3.7 Consensus size: 48
81140530 TACAAGATAA
* * *
81140540 ATATATATATGTGGTAAAGCCGAATGGCTATTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
81140588 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
* ** *
81140636 ATACGTATATGTGGTAAAATCGAATGGCTAACATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
*
81140684 ATA--TATATGTGGTAAATCCGAATGGCTAAT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAAT
81140714 GAGCAATATG
Statistics
Matches: 116, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
46 24 0.21
48 92 0.79
ACGTcount: A:0.37, C:0.07, G:0.24, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
Found at i:81142973 original size:45 final size:45
Alignment explanation
Indices: 81142711--81142969 Score: 361
Period size: 45 Copynumber: 5.9 Consensus size: 45
81142701 TCTTATCAAA
* * * **
81142711 TCACCGGCATT-TAACCTGCTAGGTTTAAAAACCCGAAT--TCAT-
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAAT-ATC
*
81142753 TCACCGGCATT-TTGCCTGCTAGGCTC-AA-GCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
*
81142795 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATACTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
81142840 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
* *
81142885 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCAAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
* *
81142930 TCACCGGCATTATAGTCTACTAGGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
81142970 GTATTGTACA
Statistics
Matches: 198, Mismatches: 13, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
40 7 0.04
41 4 0.02
42 34 0.17
43 14 0.07
44 2 0.01
45 137 0.69
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
Found at i:81144232 original size:34 final size:35
Alignment explanation
Indices: 81144165--81144394 Score: 232
Period size: 35 Copynumber: 6.7 Consensus size: 35
81144155 TTCCTTATAG
81144165 AAATACCATACCTACATTTCACAACTCGGTATGGA
1 AAATACCATACCTACATTTCACAACTCGGTATGGA
* * **
81144200 AAACACCATACCTAAATTTCA-TGCTCGGTATGGA
1 AAATACCATACCTACATTTCACAACTCGGTATGGA
* * * *
81144234 AAATACCATACCTATATGTCATAACTCAGTATGGA
1 AAATACCATACCTACATTTCACAACTCGGTATGGA
** * * * * * **
81144269 CGATGCCATACCTACGTATCATAGCTCACTATGGA
1 AAATACCATACCTACATTTCACAACTCGGTATGGA
** ** *
81144304 CGACGCCATACCTACGTTTCACAACTCGGTATGG-
1 AAATACCATACCTACATTTCACAACTCGGTATGGA
*
81144338 AAATACCATACCTACATTTCACAGCTCGGTATGG-
1 AAATACCATACCTACATTTCACAACTCGGTATGGA
81144372 AAATACCATACCTACATTTCACA
1 AAATACCATACCTACATTTCACA
81144395 CTTTGCCATG
Statistics
Matches: 164, Mismatches: 30, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
34 80 0.49
35 84 0.51
ACGTcount: A:0.34, C:0.27, G:0.13, T:0.26
Consensus pattern (35 bp):
AAATACCATACCTACATTTCACAACTCGGTATGGA
Found at i:81144414 original size:34 final size:34
Alignment explanation
Indices: 81144164--81144394 Score: 142
Period size: 34 Copynumber: 6.7 Consensus size: 34
81144154 TTTCCTTATA
* **
81144164 GAAATACCATACCTACATTTCACAACTCGGTATG
1 GAAATACCATACCTACATTTCACAGCTCGCCATG
* * * **
81144198 GAAAACACCATACCTAAATTTCA-TGCTCGGTATG
1 G-AAATACCATACCTACATTTCACAGCTCGCCATG
* * * * *
81144232 GAAAATACCATACCTATATGTCATAACTCAG-TATG
1 G-AAATACCATACCTACATTTCACAGCTC-GCCATG
* * * * * * *
81144267 GACGATGCCATACCTACGTATCATAGCTCACTATG
1 GA-AATACCATACCTACATTTCACAGCTCGCCATG
* ** * * **
81144302 GACGACGCCATACCTACGTTTCACAACTCGGTATG
1 GA-AATACCATACCTACATTTCACAGCTCGCCATG
**
81144337 GAAATACCATACCTACATTTCACAGCTCGGTATG
1 GAAATACCATACCTACATTTCACAGCTCGCCATG
81144371 GAAATACCATACCTACATTTCACA
1 GAAATACCATACCTACATTTCACA
81144395 CTTTGCCATG
Statistics
Matches: 165, Mismatches: 27, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
34 82 0.50
35 82 0.50
36 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.26
Consensus pattern (34 bp):
GAAATACCATACCTACATTTCACAGCTCGCCATG
Found at i:81144542 original size:44 final size:44
Alignment explanation
Indices: 81144494--81144599 Score: 167
Period size: 44 Copynumber: 2.4 Consensus size: 44
81144484 TCATATTTAT
* *
81144494 CACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTGTCACTGATCAGATAACTGTAGCTAAAGCTAC
* *
81144538 CACTTATCACTTGTCACAGATCAGATAACTGTGGCTAAAGCTAC
1 CACTTATCACTTGTCACTGATCAGATAACTGTAGCTAAAGCTAC
*
81144582 CACTTATCACTTATCACT
1 CACTTATCACTTGTCACT
81144600 TGTCACTTTG
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 56 1.00
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.30
Consensus pattern (44 bp):
CACTTATCACTTGTCACTGATCAGATAACTGTAGCTAAAGCTAC
Found at i:81144637 original size:27 final size:27
Alignment explanation
Indices: 81144602--81144695 Score: 152
Period size: 27 Copynumber: 3.5 Consensus size: 27
81144592 TTATCACTTG
*
81144602 TCACTTTGCCATGTCTGGCACACTTTA
1 TCACTTTGCCATGTTTGGCACACTTTA
* *
81144629 TCACCTTGCCATCTTTGGCACACTTTA
1 TCACTTTGCCATGTTTGGCACACTTTA
*
81144656 TCACTTTGCCATATTTGGCACACTTTA
1 TCACTTTGCCATGTTTGGCACACTTTA
81144683 TCACTTTGCCATG
1 TCACTTTGCCATG
81144696 ATATAATCCT
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 61 1.00
ACGTcount: A:0.19, C:0.30, G:0.13, T:0.38
Consensus pattern (27 bp):
TCACTTTGCCATGTTTGGCACACTTTA
Found at i:81147250 original size:27 final size:27
Alignment explanation
Indices: 81147202--81147360 Score: 191
Period size: 27 Copynumber: 5.9 Consensus size: 27
81147192 GCGAGGCTGC
* * *
81147202 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
81147229 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
81147255 TAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
81147282 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
81147309 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
81147336 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
81147361 GACGCTTCCT
Statistics
Matches: 115, Mismatches: 10, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
26 9 0.08
27 102 0.89
28 4 0.03
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:81147295 original size:54 final size:54
Alignment explanation
Indices: 81147202--81147360 Score: 241
Period size: 54 Copynumber: 3.0 Consensus size: 54
81147192 GCGAGGCTGC
* * * *
81147202 CAGATAT-TGTGACAAAGTCACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAA
1 CAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAGAA
* *
81147255 TAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCCACCAGAA
1 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGAA
81147309 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAG
81147361 GACGCTTCCT
Statistics
Matches: 96, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
53 11 0.11
54 85 0.89
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (54 bp):
CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGAA
Found at i:81147792 original size:8 final size:8
Alignment explanation
Indices: 81147777--81147813 Score: 65
Period size: 8 Copynumber: 4.6 Consensus size: 8
81147767 AAAATACCGA
81147777 CTTTTCGG
1 CTTTTCGG
*
81147785 CATTTCGG
1 CTTTTCGG
81147793 CTTTTCGG
1 CTTTTCGG
81147801 CTTTTCGG
1 CTTTTCGG
81147809 CTTTT
1 CTTTT
81147814 GCCAATCTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.03, C:0.24, G:0.22, T:0.51
Consensus pattern (8 bp):
CTTTTCGG
Found at i:81149092 original size:26 final size:25
Alignment explanation
Indices: 81148987--81149094 Score: 135
Period size: 26 Copynumber: 4.2 Consensus size: 25
81148977 TGAAATGCCC
*
81148987 ATCATGGAACATTTACCTAAACAATT
1 ATCATGGAACATTTACCT-AACCATT
81149013 ATCATGGAACATTTACCTAACCTATT
1 ATCATGGAACATTTACCTAACC-ATT
* *
81149039 ATCATGGAATATTTACCTAATTCATT
1 ATCATGGAACATTTACCTAA-CCATT
* *
81149065 ATCATAGAACATTTACCTAACTCGTT
1 ATCATGGAACATTTACCTAAC-CATT
81149091 ATCA
1 ATCA
81149095 ATTTGTACCA
Statistics
Matches: 72, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
25 3 0.04
26 68 0.94
27 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.07, T:0.35
Consensus pattern (25 bp):
ATCATGGAACATTTACCTAACCATT
Found at i:81149094 original size:52 final size:52
Alignment explanation
Indices: 81148987--81149085 Score: 155
Period size: 52 Copynumber: 1.9 Consensus size: 52
81148977 TGAAATGCCC
*
81148987 ATCATGGAACATTTACCTAAACAATTATCATGGAACATTTACCTAACCTATT
1 ATCATGGAACATTTACCTAAACAATTATCATAGAACATTTACCTAACCTATT
* *
81149039 ATCATGGAATATTTACCTAATTC-ATTATCATAGAACATTTACCTAAC
1 ATCATGGAACATTTACCTAA-ACAATTATCATAGAACATTTACCTAAC
81149086 TCGTTATCAA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
52 42 0.98
53 1 0.02
ACGTcount: A:0.38, C:0.20, G:0.07, T:0.34
Consensus pattern (52 bp):
ATCATGGAACATTTACCTAAACAATTATCATAGAACATTTACCTAACCTATT
Found at i:81151067 original size:74 final size:74
Alignment explanation
Indices: 81150946--81151090 Score: 272
Period size: 74 Copynumber: 2.0 Consensus size: 74
81150936 CACGCCCGTA
81150946 TCCTCAGCCCATGTAACTCTCTGTTTATGATGTCAGCAACGAAATAGGGTCACACGGCCAAGTCA
1 TCCTCAGCCCATGTAACTCTCTGTTTATGATGTCAGCAACGAAATAGGGTCACACGGCCAAGTCA
81151011 CACGCCATG
66 CACGCCATG
* *
81151020 TCCTCAGCCCGTGTAACTCTCTGTTTATGATGTCAGCAACGAAATAGGGTCACACGGCCAAGTCG
1 TCCTCAGCCCATGTAACTCTCTGTTTATGATGTCAGCAACGAAATAGGGTCACACGGCCAAGTCA
81151085 CACGCC
66 CACGCC
81151091 CGTGTGCTAG
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
74 69 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (74 bp):
TCCTCAGCCCATGTAACTCTCTGTTTATGATGTCAGCAACGAAATAGGGTCACACGGCCAAGTCA
CACGCCATG
Found at i:81152520 original size:16 final size:16
Alignment explanation
Indices: 81152501--81152532 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
81152491 AAAAATACAT
81152501 ATTTATAAATCATAAG
1 ATTTATAAATCATAAG
*
81152517 ATTTATACATCATAAG
1 ATTTATAAATCATAAG
81152533 CATAGACCCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.09, G:0.06, T:0.38
Consensus pattern (16 bp):
ATTTATAAATCATAAG
Found at i:81154930 original size:50 final size:50
Alignment explanation
Indices: 81154860--81155107 Score: 302
Period size: 50 Copynumber: 4.9 Consensus size: 50
81154850 ACTGAAGCTC
* * * *
81154860 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * *
81154910 TCTGGTACACGTAGTGGCCTGCACTTAGTACTACACACATGACCTAACCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * *
81154960 TC-GGATACACGTAGTAG-CTGGCACTTAGTACTACACACGTGATCGAAGCTA
1 TCTGG-TACACGTAGTAGCCT-GCACTTAGTACTACACACGTGACCTAA-CAA
* * * * *
81155011 TCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* *
81155061 TCTGGTACATGTAGTAGCCTACACTTAGTACTACACACGTGACCTAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
81155108 AACCGTCTTA
Statistics
Matches: 167, Mismatches: 26, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
49 4 0.02
50 122 0.73
51 37 0.22
52 4 0.02
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
Found at i:81155045 original size:101 final size:100
Alignment explanation
Indices: 81154860--81155104 Score: 296
Period size: 101 Copynumber: 2.4 Consensus size: 100
81154850 ACTGAAGCTC
* * * * * * *
81154860 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGT
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCGAACAATCAGGTACACATAGT
* * *
81154925 GGCCTGCACTTAGTACTACACACATGACCTAACCA
66 AGCCTGCACTTAGTACTACACACACGACCTAACAA
* * *
81154960 TC-GGATACACGTAGTAG-CTGGCACTTAGTACTACACACGTGATCGAAGCTATCAGGTACGCAT
1 TCTGG-TACACGTAGTAGCCT-GCACTTAGTACTACACACGTGACCGAA-CAATCAGGTACACAT
**
81155023 AGTAGCCTGCACTTAGTACTACACATGCGACCTAACAA
63 AGTAGCCTGCACTTAGTACTACACACACGACCTAACAA
* *
81155061 TCTGGTACATGTAGTAGCCTACACTTAGTACTACACACGTGACC
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
81155105 TAAAACCGTC
Statistics
Matches: 122, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
99 4 0.03
100 35 0.29
101 79 0.65
102 4 0.03
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.24
Consensus pattern (100 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCGAACAATCAGGTACACATAGT
AGCCTGCACTTAGTACTACACACACGACCTAACAA
Found at i:81156717 original size:48 final size:48
Alignment explanation
Indices: 81156657--81156838 Score: 229
Period size: 48 Copynumber: 3.8 Consensus size: 48
81156647 CAATAACAAT
* * *
81156657 GCCGATGCCATGTTCCAAACATGGCCTTACACTAGCTCGCATATTGAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCGCATATTGAG
* ** * *** *
81156705 GCCGATGTCATGTCCCAGGCATGGTCTTACACTGGCTCACATAACAAT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCGCATATTGAG
* *
81156753 GTCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCATATTGAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCGCATATTGAG
* *
81156801 GTCGATGCCATGTCCCAAGCATGGTCTTACACTGGCTC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTC
81156839 AGATAACAAT
Statistics
Matches: 111, Mismatches: 23, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 111 1.00
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCGCATATTGAG
Found at i:81156813 original size:96 final size:95
Alignment explanation
Indices: 81156649--81156886 Score: 352
Period size: 96 Copynumber: 2.5 Consensus size: 95
81156639 GGATGTTACA
* * *
81156649 ATAACAATGCCGATGCCATGTTCCAAACATGGCCTTACACTAGCTCGCATATTGAGGCCGATGTC
1 ATAACAATG-CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCATATTGAGGCCGATGCC
*
81156714 ATGTCCCAGGCATGGTCTTACACTGGCTCAC
65 ATGTCCCAAGCATGGTCTTACACTGGCTCAC
*
81156745 ATAACAATGTCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCATATTGAGGTCGATGCC
1 ATAACAATG-CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCATATTGAGGCCGATGCC
*
81156810 ATGTCCCAAGCATGGTCTTACACTGGCTCAG
65 ATGTCCCAAGCATGGTCTTACACTGGCTCAC
* **
81156841 ATAACAATGCTGATACCACATTCCAAAC-TGGGTCTTACACTGGCTC
1 ATAACAATGC-GATGCCATGTTCCAAACAT-GGTCTTACACTGGCTC
81156887 ACACATAACC
Statistics
Matches: 130, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
95 2 0.02
96 128 0.98
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (95 bp):
ATAACAATGCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCATATTGAGGCCGATGCCA
TGTCCCAAGCATGGTCTTACACTGGCTCAC
Found at i:81159820 original size:46 final size:46
Alignment explanation
Indices: 81159766--81159938 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 46
81159756 ATTGAGCATT
81159766 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* * *
81159812 CGAACTCGTTGAG-TGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TC
81159858 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* * *
81159904 TGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81159939 GCAGGTTACA
Statistics
Matches: 108, Mismatches: 9, Indels: 20
0.79 0.07 0.15
Matches are distributed among these distances:
41 2 0.02
42 5 0.05
44 3 0.03
45 13 0.12
46 62 0.57
47 13 0.12
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
Found at i:81159888 original size:92 final size:93
Alignment explanation
Indices: 81159761--81159931 Score: 308
Period size: 92 Copynumber: 1.8 Consensus size: 93
81159751 GGATGATTGA
*
81159761 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG-
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
81159825 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
81159853 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
81159918 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
81159932 CTTATGGGCA
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 61 0.81
93 14 0.19
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:81169874 original size:94 final size:95
Alignment explanation
Indices: 81169725--81169922 Score: 274
Period size: 94 Copynumber: 2.1 Consensus size: 95
81169715 GCACGTAGAA
* * * * * *
81169725 TGAGACATATCACAAATCTTACAAAAGCCCATGCTCTCAAGGAGCACGTAGAGTGAGGCTCGCAA
1 TGAGACTTATCACAAAACTCACAAAAGCCCATGCTCTCAAGGAGCACGCAAAGTGAGGCTCACAA
81169790 AAGCTCATGTT-TCAAAGGAACACACAGAG
66 AAGCTCATGTTCTCAAAGGAACACACAGAG
* *
81169819 TGAGACTTATCACAAAACTCACAAAATCCCATGCT-TACGAGGAGCACGCAAAGTGAGGCTCACA
1 TGAGACTTATCACAAAACTCACAAAAGCCCATGCTCT-CAAGGAGCACGCAAAGTGAGGCTCACA
* **
81169883 AAAGCTCATGTTCTTAAAGGAACACGTAGAG
65 AAAGCTCATGTTCTCAAAGGAACACACAGAG
81169914 TGAGACTTA
1 TGAGACTTA
81169923 ACATGGGTGA
Statistics
Matches: 91, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
93 1 0.01
94 66 0.73
95 24 0.26
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.19
Consensus pattern (95 bp):
TGAGACTTATCACAAAACTCACAAAAGCCCATGCTCTCAAGGAGCACGCAAAGTGAGGCTCACAA
AAGCTCATGTTCTCAAAGGAACACACAGAG
Found at i:81175241 original size:87 final size:85
Alignment explanation
Indices: 81175141--81175298 Score: 210
Period size: 86 Copynumber: 1.8 Consensus size: 85
81175131 AAAAAATTTT
* * *
81175141 TTAAAAAGAAATTAAATCCCT-CATTTTTTTTATACTCAATTAAGTACTTAAACTTTCAAAATGC
1 TTAAAAAAAAATTAAACCCCTAC-TTTTTTTT-CACTCAATTAAGTACTTAAACTTTCAAAATGC
81175205 ATCAAAAAAGCCCTCAAACTTC
64 ATCAAAAAAGCCCTCAAACTTC
* ** * *
81175227 TTAAAAAAACAATTAAGCCCCTACTTTTTTTTCACTCAATTGGGTACTTGAACTTTCAAAATGGA
1 TTAAAAAAA-AATTAAACCCCTACTTTTTTTTCACTCAATTAAGTACTTAAACTTTCAAAATGCA
81175292 TCAAAAA
65 TCAAAAA
81175299 GACCATCAAA
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
86 43 0.69
87 18 0.29
88 1 0.02
ACGTcount: A:0.41, C:0.19, G:0.07, T:0.34
Consensus pattern (85 bp):
TTAAAAAAAAATTAAACCCCTACTTTTTTTTCACTCAATTAAGTACTTAAACTTTCAAAATGCAT
CAAAAAAGCCCTCAAACTTC
Found at i:81175308 original size:86 final size:88
Alignment explanation
Indices: 81175164--81175331 Score: 216
Period size: 86 Copynumber: 1.9 Consensus size: 88
81175154 AAATCCCTCA
* * *
81175164 TTTTTTTTATACTCAATTAAGTACTTAAACTTTCAAAATGCATCAAAAAAGCCCTCAAACTTCTT
1 TTTTTTTTACACTCAATTAAGTACTTAAACTTTCAAAATGCATCAAAAAAGCCATCAAAATTCTT
81175229 -AAAAAAACAATTAAGCCCCTAC
66 CAAAAAAACAATTAAGCCCCTAC
** * * *
81175251 TTTTTTTT-CACTCAATTGGGTACTTGAACTTTCAAAATGGATC-AAAAAGACCATCAAAATTTT
1 TTTTTTTTACACTCAATTAAGTACTTAAACTTTCAAAATGCATCAAAAAAG-CCATCAAAATTCT
* *
81175314 TCAAAAGAGCAATTAAGC
65 TCAAAAAAACAATTAAGC
81175332 TCATGCTCTT
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
85 6 0.09
86 41 0.59
87 22 0.32
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.33
Consensus pattern (88 bp):
TTTTTTTTACACTCAATTAAGTACTTAAACTTTCAAAATGCATCAAAAAAGCCATCAAAATTCTT
CAAAAAAACAATTAAGCCCCTAC
Found at i:81175922 original size:11 final size:10
Alignment explanation
Indices: 81175903--81175969 Score: 53
Period size: 11 Copynumber: 6.3 Consensus size: 10
81175893 CATAATTGTG
*
81175903 AAATGGTAACA
1 AAATAGTAA-A
81175914 AAATAGTAAAA
1 AAATAGT-AAA
*
81175925 AAATAGCAAGA
1 AAATAGTAA-A
*
81175936 AAATAGCAACA
1 AAATAGTAA-A
*
81175947 AAATAATAAA
1 AAATAGTAAA
*
81175957 AAACAGTAAA
1 AAATAGTAAA
81175967 AAA
1 AAA
81175970 GAAAAAGAAC
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
10 14 0.30
11 31 0.66
12 2 0.04
ACGTcount: A:0.69, C:0.07, G:0.10, T:0.13
Consensus pattern (10 bp):
AAATAGTAAA
Found at i:81175938 original size:22 final size:21
Alignment explanation
Indices: 81175913--81175969 Score: 60
Period size: 22 Copynumber: 2.7 Consensus size: 21
81175903 AAATGGTAAC
*
81175913 AAAATAGTAAAAAAATAGCAA
1 AAAATAGTAAAAAAATAACAA
* * *
81175934 GAAAATAGCAACAAAATAATAA
1 -AAAATAGTAAAAAAATAACAA
*
81175956 AAAACAGTAAAAAA
1 AAAATAGTAAAAAA
81175970 GAAAAAGAAC
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
21 11 0.39
22 17 0.61
ACGTcount: A:0.72, C:0.07, G:0.09, T:0.12
Consensus pattern (21 bp):
AAAATAGTAAAAAAATAACAA
Found at i:81176358 original size:64 final size:64
Alignment explanation
Indices: 81176269--81176388 Score: 158
Period size: 64 Copynumber: 1.9 Consensus size: 64
81176259 TTTTACGAAA
*
81176269 TTTATATTTCTTTACATTTTGTATAATTTTTTATGGCTTT-ATAAAATTTT-ATATTTCTATATA
1 TTTATATTTCTTTACATTTTGTATAATTTTTAAT--CTTTAATAAAATTTTAATATTTCTATATA
81176332 T
64 T
*
81176333 TTTATAATTT-TTTACGATTTT-TATAATTTTTAATTTTTAATAAAATTTTAATATTT
1 TTTAT-ATTTCTTTAC-ATTTTGTATAATTTTTAATCTTTAATAAAATTTTAATATTT
81176389 GAAAATTTTT
Statistics
Matches: 50, Mismatches: 2, Indels: 8
0.83 0.03 0.13
Matches are distributed among these distances:
62 3 0.06
63 10 0.20
64 28 0.56
65 9 0.18
ACGTcount: A:0.31, C:0.04, G:0.03, T:0.62
Consensus pattern (64 bp):
TTTATATTTCTTTACATTTTGTATAATTTTTAATCTTTAATAAAATTTTAATATTTCTATATAT
Found at i:81176381 original size:27 final size:27
Alignment explanation
Indices: 81176351--81176419 Score: 68
Period size: 28 Copynumber: 2.5 Consensus size: 27
81176341 TTTTTACGAT
81176351 TTTTATAATTTTTAATTTTTAATAAAA
1 TTTTATAATTTTTAATTTTTAATAAAA
** *
81176378 TTTTA-ATATTTGAAAATTTTTATTAAAA
1 TTTTATA-ATTT-TTAATTTTTAATAAAA
* *
81176406 TTTAATAATATTTA
1 TTTTATAATTTTTA
81176420 TAGCTTTTAT
Statistics
Matches: 32, Mismatches: 7, Indels: 6
0.71 0.16 0.13
Matches are distributed among these distances:
26 1 0.03
27 10 0.31
28 20 0.62
29 1 0.03
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (27 bp):
TTTTATAATTTTTAATTTTTAATAAAA
Found at i:81178249 original size:25 final size:25
Alignment explanation
Indices: 81178219--81178274 Score: 112
Period size: 25 Copynumber: 2.2 Consensus size: 25
81178209 GTAACCATTC
81178219 ATTCTTGAACGCCAATTTAGCTTCA
1 ATTCTTGAACGCCAATTTAGCTTCA
81178244 ATTCTTGAACGCCAATTTAGCTTCA
1 ATTCTTGAACGCCAATTTAGCTTCA
81178269 ATTCTT
1 ATTCTT
81178275 TACTGGTAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.27, C:0.23, G:0.11, T:0.39
Consensus pattern (25 bp):
ATTCTTGAACGCCAATTTAGCTTCA
Found at i:81178955 original size:6 final size:6
Alignment explanation
Indices: 81178940--81178974 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
81178930 TTGGTTATTT
*
81178940 TTTC-A TTTCAA TTTCAA TTTTAA TTTCAA TTTCAA
1 TTTCAA TTTCAA TTTCAA TTTCAA TTTCAA TTTCAA
81178975 CTTTGTATTC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
5 4 0.15
6 23 0.85
ACGTcount: A:0.31, C:0.14, G:0.00, T:0.54
Consensus pattern (6 bp):
TTTCAA
Found at i:81178986 original size:18 final size:18
Alignment explanation
Indices: 81178939--81178974 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
81178929 TTTGGTTATT
*
81178939 TTTTCATTTCAATTTCAA
1 TTTTAATTTCAATTTCAA
81178957 TTTTAATTTCAATTTCAA
1 TTTTAATTTCAATTTCAA
81178975 CTTTGTATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.14, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTTAATTTCAATTTCAA
Found at i:81179012 original size:14 final size:14
Alignment explanation
Indices: 81178993--81179023 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
81178983 TCAAAACTCT
81178993 AGGGATTGGCAATA
1 AGGGATTGGCAATA
81179007 AGGGATTGGCAATA
1 AGGGATTGGCAATA
81179021 AGG
1 AGG
81179024 TAATCAGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.35, C:0.06, G:0.39, T:0.19
Consensus pattern (14 bp):
AGGGATTGGCAATA
Found at i:81183369 original size:15 final size:15
Alignment explanation
Indices: 81183334--81183402 Score: 54
Period size: 15 Copynumber: 4.6 Consensus size: 15
81183324 ATCTTGGGTA
*
81183334 TCTTTATCCTGGATCT
1 TCTTTATTCTGGAT-T
81183350 T-TTTATTCTGGATT
1 TCTTTATTCTGGATT
* *
81183364 TCTTTATTTTGGGTT
1 TCTTTATTCTGGATT
*
81183379 T-TTCTA-TCTTTGATT
1 TCTT-TATTC-TGGATT
81183394 TCTTTATTC
1 TCTTTATTC
81183403 GATTTTCTTG
Statistics
Matches: 42, Mismatches: 6, Indels: 10
0.72 0.10 0.17
Matches are distributed among these distances:
14 5 0.12
15 32 0.76
16 5 0.12
ACGTcount: A:0.12, C:0.14, G:0.12, T:0.62
Consensus pattern (15 bp):
TCTTTATTCTGGATT
Found at i:81195349 original size:56 final size:56
Alignment explanation
Indices: 81195263--81195375 Score: 226
Period size: 56 Copynumber: 2.0 Consensus size: 56
81195253 AATATTGATG
81195263 TACTTACCTTGTTCCATTGATTTCAATCTTTAATTTGATTTTCTCTCTCCTCCAGC
1 TACTTACCTTGTTCCATTGATTTCAATCTTTAATTTGATTTTCTCTCTCCTCCAGC
81195319 TACTTACCTTGTTCCATTGATTTCAATCTTTAATTTGATTTTCTCTCTCCTCCAGC
1 TACTTACCTTGTTCCATTGATTTCAATCTTTAATTTGATTTTCTCTCTCCTCCAGC
81195375 T
1 T
81195376 TCTATTCCTT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.18, C:0.27, G:0.07, T:0.49
Consensus pattern (56 bp):
TACTTACCTTGTTCCATTGATTTCAATCTTTAATTTGATTTTCTCTCTCCTCCAGC
Found at i:81195622 original size:11 final size:11
Alignment explanation
Indices: 81195606--81195630 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
81195596 TTATATATAC
81195606 TAATAAAATAA
1 TAATAAAATAA
81195617 TAATAAAATAA
1 TAATAAAATAA
81195628 TAA
1 TAA
81195631 AATATCATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:81195926 original size:24 final size:22
Alignment explanation
Indices: 81195893--81195936 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
81195883 GATCCTTCCA
81195893 CCCTTAAAATATTTTCACTATTAT
1 CCCTTAAAAT-TTTTCA-TATTAT
*
81195917 CCCTTCAAATTTTTCATATT
1 CCCTTAAAATTTTTCATATT
81195937 TACACTTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 6 0.32
24 9 0.47
ACGTcount: A:0.30, C:0.23, G:0.00, T:0.48
Consensus pattern (22 bp):
CCCTTAAAATTTTTCATATTAT
Found at i:81195957 original size:30 final size:31
Alignment explanation
Indices: 81195901--81195959 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
81195891 CACCCTTAAA
*
81195901 ATATTTTCACTATTATCCCTTCAAATTTTTC
1 ATATTTACACTATTATCCCTTCAAATTTTTC
81195932 ATATTTACACT-TTAATCCC-TCAAATTTT
1 ATATTTACACTATT-ATCCCTTCAAATTTT
81195960 GAGTATATAC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 11 0.42
31 15 0.58
ACGTcount: A:0.29, C:0.22, G:0.00, T:0.49
Consensus pattern (31 bp):
ATATTTACACTATTATCCCTTCAAATTTTTC
Found at i:81197480 original size:43 final size:42
Alignment explanation
Indices: 81197381--81197496 Score: 162
Period size: 43 Copynumber: 2.7 Consensus size: 42
81197371 TAAGGTTACT
*
81197381 GAGATTACGTGTAAGACCATATCTGGGATATGCCATCGATAT
1 GAGATTACGTGTAAGACCATATCTGGGATATGCCATCGATAC
* * * *
81197423 GAGAATT-CGCGTAAGACCATATTTGGGCTATTGGCATCGATAC
1 GAG-ATTACGTGTAAGACCATATCTGGGATA-TGCCATCGATAC
81197466 GAGATTACGTGTAAGACCATATCTGGGATAT
1 GAGATTACGTGTAAGACCATATCTGGGATAT
81197497 AACATTGGTA
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
42 27 0.43
43 36 0.57
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.28
Consensus pattern (42 bp):
GAGATTACGTGTAAGACCATATCTGGGATATGCCATCGATAC
Found at i:81201531 original size:27 final size:27
Alignment explanation
Indices: 81201500--81201677 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
81201490 TAAATTGTAC
81201500 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
81201527 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
81201553 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
81201581 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
81201609 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
81201636 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
81201663 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
81201678 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:81201614 original size:82 final size:81
Alignment explanation
Indices: 81201501--81201656 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
81201491 AAATTGTACA
* *
81201501 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
81201565 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
81201582 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
81201647 TGCGAGTTGA
65 TGCGAATTGA
81201657 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:81201668 original size:82 final size:81
Alignment explanation
Indices: 81201497--81201677 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
81201487 GATTAAATTG
* *
81201497 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
81201562 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
81201578 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
81201642 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
81201660 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
81201678 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:81203310 original size:39 final size:40
Alignment explanation
Indices: 81203265--81203432 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
81203255 CGGGGTTTAG
* * *
81203265 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
81203304 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
81203344 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
81203384 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
81203425 CCGGATAT
1 CCGGATAT
81203433 CTTTCAAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:81203415 original size:41 final size:40
Alignment explanation
Indices: 81203288--81203432 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
81203278 CTCGCACAAG
* * * * *
81203288 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
81203328 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
81203368 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
81203409 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
81203433 CTTTCAAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:81205910 original size:11 final size:11
Alignment explanation
Indices: 81205894--81205921 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
81205884 ATTATTTGAA
81205894 ATGGTTTATTT
1 ATGGTTTATTT
81205905 ATGGTTTATTT
1 ATGGTTTATTT
81205916 ATGGTT
1 ATGGTT
81205922 ATATGATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.18, C:0.00, G:0.21, T:0.61
Consensus pattern (11 bp):
ATGGTTTATTT
Found at i:81210801 original size:6 final size:6
Alignment explanation
Indices: 81210790--81210821 Score: 55
Period size: 6 Copynumber: 5.2 Consensus size: 6
81210780 ACTCAGTGTA
81210790 ATTCTG ATTCTG ATTCTG ATTCTG AATTCTG A
1 ATTCTG ATTCTG ATTCTG ATTCTG -ATTCTG A
81210822 ATAGATGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 19 0.76
7 6 0.24
ACGTcount: A:0.22, C:0.16, G:0.16, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:81219423 original size:40 final size:40
Alignment explanation
Indices: 81219221--81219409 Score: 281
Period size: 40 Copynumber: 4.7 Consensus size: 40
81219211 TATTCAGATG
* * *
81219221 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
** *
81219261 A-ATTTCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
**
81219301 ATAACTAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
81219341 ATAACCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
81219381 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
81219410 AGCAAGTAGC
Statistics
Matches: 134, Mismatches: 13, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
39 1 0.01
40 132 0.99
41 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:81219423 original size:80 final size:79
Alignment explanation
Indices: 81219221--81219432 Score: 284
Period size: 80 Copynumber: 2.7 Consensus size: 79
81219211 TATTCAGATG
* * * *
81219221 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCTAGT-GACTAATTTCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAG-CT-ATATCCGGCTAAGTCCCGAAGGC
81219285 AATTGTGCGAGTTACT
64 AATTGTGCGAGTTACT
** * *
81219301 ATAACTAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAACCAGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TAGCTATATCC-GGCTAAGTCCCGAAGGC
*
81219365 ATTTGTGCGAGTTACT
64 AATTGTGCGAGTTACT
*
81219381 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGCTATATCCGGCTAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGCTAA
81219433 ATTTCGAAGG
Statistics
Matches: 115, Mismatches: 13, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
79 11 0.10
80 103 0.90
81 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGCTAAGTCCCGAAGGCAA
TTGTGCGAGTTACT
Found at i:81226335 original size:40 final size:40
Alignment explanation
Indices: 81226133--81226321 Score: 299
Period size: 40 Copynumber: 4.7 Consensus size: 40
81226123 TATTCAGATG
* * *
81226133 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
** *
81226173 A-ATTTCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
81226213 ATAACCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
81226253 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
81226293 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
81226322 AGCAAGTAGC
Statistics
Matches: 136, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
39 1 0.01
40 134 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:81226335 original size:80 final size:80
Alignment explanation
Indices: 81226133--81226354 Score: 299
Period size: 80 Copynumber: 2.8 Consensus size: 80
81226123 TATTCAGATG
* * *
81226133 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCTAGT-GACTA-ATTTCGGGCTAAGTCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAG-CTATA-TCCGGGCTAAGTCCCGAAGG
81226196 CAATTGTGCGAGTTACT
64 CAATTGTGCGAGTTACT
* * *
81226213 ATAACCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TAGCTATATCCGGGCTAAGTCCCGAAGGC
*
81226277 ATTTGTGCGAGTTACT
65 AATTGTGCGAGTTACT
* * *
81226293 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGCTATATCC-GGCTAAATTCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGGCTAAGTCCCGAAGG
81226355 TACTTGGTTT
Statistics
Matches: 126, Mismatches: 12, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
79 16 0.13
80 108 0.86
81 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.24
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGGCTAAGTCCCGAAGGCA
ATTGTGCGAGTTACT
Found at i:81229576 original size:46 final size:45
Alignment explanation
Indices: 81229481--81229692 Score: 216
Period size: 46 Copynumber: 4.6 Consensus size: 45
81229471 AGGCCAATAT
* * **
81229481 CATGTCCCAGACATGGTCTTACACTAACA-CATCTTGTA-GCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCATCGTC-TCAAGGCCGATG
* * *
81229526 CATGTCTCAGACATGTCTTATACTAGCATACGTCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCAT-CGTCTCAAGGCCGATG
*
81229572 CATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCA-TCGTCTCAAGGCCGATG
* * *
81229618 CCATGTACCAGACATGGTCTTACACTTGC-TC-TCATAATAAGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCATCGTC-T--CAAGGCCGATG
81229666 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
81229693 TCACAATAGC
Statistics
Matches: 142, Mismatches: 16, Indels: 17
0.81 0.09 0.10
Matches are distributed among these distances:
44 12 0.08
45 17 0.12
46 65 0.46
47 27 0.19
48 21 0.15
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCATCGTCTCAAGGCCGATG
Found at i:81232760 original size:17 final size:17
Alignment explanation
Indices: 81232740--81232773 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
81232730 AAAAGTATAG
81232740 CCTTAGTGAAAGTTTTA
1 CCTTAGTGAAAGTTTTA
81232757 CCTTAGTGAAAGTTTTA
1 CCTTAGTGAAAGTTTTA
81232774 TGGCAATGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.12, G:0.18, T:0.41
Consensus pattern (17 bp):
CCTTAGTGAAAGTTTTA
Found at i:81233689 original size:42 final size:41
Alignment explanation
Indices: 81233615--81233732 Score: 148
Period size: 42 Copynumber: 2.8 Consensus size: 41
81233605 GGATTACTAG
**
81233615 GATTACGTGTAAGACCATATCTTGGATATGGCATCGATATTA
1 GATTACGTGTAAGACCATATC-TGGATATGGCATCGATACGA
* *
81233657 GACTT-CGTGTAAGACCATAGCTGGCTATTGGCATCGATACGA
1 GA-TTACGTGTAAGACCATATCTGGATA-TGGCATCGATACGA
*
81233699 GATTACATGTAAGACCATATCTGGGATATGGCAT
1 GATTACGTGTAAGACCATATCT-GGATATGGCAT
81233733 TGGTATAGTA
Statistics
Matches: 65, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
41 7 0.11
42 52 0.80
43 6 0.09
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.30
Consensus pattern (41 bp):
GATTACGTGTAAGACCATATCTGGATATGGCATCGATACGA
Found at i:81242865 original size:44 final size:42
Alignment explanation
Indices: 81242792--81242930 Score: 138
Period size: 44 Copynumber: 3.2 Consensus size: 42
81242782 TGTGTTCTTG
* * *
81242792 TGTAAGACCACGTCTGGGATGTTGGCATCGAATTATGATTTACA
1 TGTAAGACCATGTCTGGGAT-ATGGCATCGAATT-TGATTTATA
* * * *
81242836 TGTAAGACCATGTCTAGGATATCGACATCGTATTTGATTT-TG
1 TGTAAGACCATGTCTGGGATAT-GGCATCGAATTTGATTTATA
* *
81242878 TGTAAGACCCTGTCTGGGACAGTGGCATCGATATTTGA-TTATA
1 TGTAAGACCATGTCTGGGATA-TGGCATCGA-ATTTGATTTATA
81242921 TGTAAGACCA
1 TGTAAGACCA
81242931 CATTTGAGAC
Statistics
Matches: 77, Mismatches: 14, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
42 26 0.34
43 24 0.31
44 27 0.35
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGATATGGCATCGAATTTGATTTATA
Found at i:81242892 original size:42 final size:43
Alignment explanation
Indices: 81242817--81242930 Score: 117
Period size: 42 Copynumber: 2.7 Consensus size: 43
81242807 GGGATGTTGG
* *
81242817 CATCGA-ATTATGATTTACATGTAAGACCATGTCTAGGATA-TCGA
1 CATCGATATT-TGA-TTATATGTAAGACCATGTCTAGGACAGT-GA
* * * * *
81242861 CATCG-TATTTGATTTTGTGTAAGACCCTGTCTGGGACAGTGG
1 CATCGATATTTGATTATATGTAAGACCATGTCTAGGACAGTGA
81242903 CATCGATATTTGATTATATGTAAGACCA
1 CATCGATATTTGATTATATGTAAGACCA
81242931 CATTTGAGAC
Statistics
Matches: 57, Mismatches: 10, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
42 26 0.46
43 23 0.40
44 8 0.14
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (43 bp):
CATCGATATTTGATTATATGTAAGACCATGTCTAGGACAGTGA
Found at i:81245041 original size:39 final size:39
Alignment explanation
Indices: 81244998--81245160 Score: 236
Period size: 39 Copynumber: 4.2 Consensus size: 39
81244988 GGACTTTAGC
* * * * *
81244998 CCGGACATATTTCCAGCACGTAGCCTGCTGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
* *
81245037 CCGGATATAATTCCAGTACATAGCCTACGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
81245076 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAGGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
* *
81245115 CCGGATATAATTCCAGCACATAGCCTGAGGACCCCAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
81245154 CCGGATA
1 CCGGATA
81245161 CACATAAAAT
Statistics
Matches: 111, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 111 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:81249864 original size:51 final size:50
Alignment explanation
Indices: 81249683--81249922 Score: 302
Period size: 51 Copynumber: 4.8 Consensus size: 50
81249673 TAGCCAAAGC
* * * *
81249683 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAAT
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAT
* * * * * * *
81249732 TATCCGGTACACGTAGTAGCCTGAACTTAGTACTACACACGTGACCTAAC
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAT
* * * * * *
81249782 CATCTGATACACGTAGTAGCCTGCAGTTAGTACTACACACGTGATCGAAGT
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAA-T
81249833 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAA-T
81249884 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
81249923 TGCAACCTCA
Statistics
Matches: 167, Mismatches: 22, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
49 38 0.23
50 45 0.27
51 84 0.50
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (50 bp):
TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAT
Found at i:81249866 original size:101 final size:100
Alignment explanation
Indices: 81249694--81249922 Score: 289
Period size: 101 Copynumber: 2.3 Consensus size: 100
81249684 ATCTGGTACG
* *
81249694 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGAACT
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACATAGTAGCCTGAACT
* *
81249759 TAGTACTACACACGTGACCTAA-CCATCTGATACA
66 TAGTACTACACACGTGACCGAAGCCATCGGATACA
* * * * * * *
81249793 CGTAGTAGCCTGCAGTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACACATAGTAGCCTGAA
* ** * *
81249858 CTTAGTACTACACACGTGATCGAAGTTATCGGGTACG
64 CTTAGTACTACACACGTGACCGAAGCCATCGGATACA
81249895 CATAGTAGCCTGCACTTAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
81249923 TGCAACCTCA
Statistics
Matches: 109, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
99 29 0.27
100 3 0.03
101 44 0.40
102 33 0.30
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (100 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACATAGTAGCCTGAACT
TAGTACTACACACGTGACCGAAGCCATCGGATACA
Found at i:81263809 original size:20 final size:20
Alignment explanation
Indices: 81263771--81263815 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
81263761 AGCACATGTA
* *
81263771 TTCATAAAATTTCAGAAATT
1 TTCATAAAATTTCACAAATG
* *
81263791 TTCATCAAATTTTACAAATG
1 TTCATAAAATTTCACAAATG
81263811 TTCAT
1 TTCAT
81263816 TGTAGTCCTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.40, C:0.13, G:0.04, T:0.42
Consensus pattern (20 bp):
TTCATAAAATTTCACAAATG
Found at i:81273471 original size:33 final size:33
Alignment explanation
Indices: 81273434--81273500 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
81273424 TAAGTCAAGC
81273434 TTGCACATATTCATTACATCACCAATCAAACTA
1 TTGCACATATTCATTACATCACCAATCAAACTA
81273467 TTGCACATATTCATTACATCACCAATCAAACTA
1 TTGCACATATTCATTACATCACCAATCAAACTA
81273500 T
1 T
81273501 GTCTATTTAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.39, C:0.27, G:0.03, T:0.31
Consensus pattern (33 bp):
TTGCACATATTCATTACATCACCAATCAAACTA
Found at i:81274075 original size:42 final size:43
Alignment explanation
Indices: 81273975--81274121 Score: 124
Period size: 43 Copynumber: 3.4 Consensus size: 43
81273965 AAATGCCAAA
* ** *
81273975 GTCCCAGACGTGGTCTTACATGTAATCAAATATTGATGCCACT
1 GTCCCAGACATGGTCTTACATAAAATCAAATATCGATGCCACT
* * *
81274018 GTCCCAGATAGGGTCTTACATAAAATCATATA-CGATGCCTA-T
1 GTCCCAGACATGGTCTTACATAAAATCAAATATCGATGCC-ACT
*
81274060 GTCCTAGACATGGTCTTACACGT-AAATCACAA-ATCGATGCCAAC-
1 GTCCCAGACATGGTCTTACA--TAAAATCA-AATATCGATGCC-ACT
* *
81274104 GTTCCAGACGTGGTCTTA
1 GTCCCAGACATGGTCTTA
81274122 TATGATAACA
Statistics
Matches: 83, Mismatches: 15, Indels: 11
0.76 0.14 0.10
Matches are distributed among these distances:
42 24 0.29
43 34 0.41
44 25 0.30
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACATAAAATCAAATATCGATGCCACT
Found at i:81276430 original size:28 final size:27
Alignment explanation
Indices: 81276356--81276461 Score: 95
Period size: 28 Copynumber: 3.8 Consensus size: 27
81276346 AATCTTATAG
* *
81276356 AAAGAAACGCCTTTGTGGCGATCTCTGTA
1 AAAGAAA--CCTTTGTGGTGATCTCTGTT
* *
81276385 AAAGAAACCTTTATGGTGGTCTCTGTT
1 AAAGAAACCTTTGTGGTGATCTCTGTT
**
81276412 AAAGAAAGTTTTTGTGGTGATCTCTGTT
1 AAAGAAA-CCTTTGTGGTGATCTCTGTT
* * *
81276440 AAATGAAGCATTTGTGGCGATC
1 AAA-GAAACCTTTGTGGTGATC
81276462 ATTGTAAAAG
Statistics
Matches: 63, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
27 23 0.37
28 30 0.48
29 10 0.16
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (27 bp):
AAAGAAACCTTTGTGGTGATCTCTGTT
Found at i:81276475 original size:28 final size:28
Alignment explanation
Indices: 81276367--81276492 Score: 87
Period size: 28 Copynumber: 4.5 Consensus size: 28
81276357 AAGAAACGCC
* *
81276367 TTTGTGGCGATCTCTGTAAAA-GAAACC
1 TTTGTGGCGATCTCTGTAAAAGGAAGCA
* * * * * **
81276394 TTTATGGTGGTCTCTGTTAAAGAAAGTT
1 TTTGTGGCGATCTCTGTAAAAGGAAGCA
* * *
81276422 TTTGTGGTGATCTCTGTTAAATGAAGCA
1 TTTGTGGCGATCTCTGTAAAAGGAAGCA
81276450 TTTGTGGCGATCAT-TGTAAAAGGAAGTC-
1 TTTGTGGCGATC-TCTGTAAAAGGAAG-CA
* *
81276478 TTTATGGCTATCTCT
1 TTTGTGGCGATCTCT
81276493 AAAAAGAAAT
Statistics
Matches: 76, Mismatches: 19, Indels: 7
0.75 0.19 0.07
Matches are distributed among these distances:
27 18 0.24
28 56 0.74
29 2 0.03
ACGTcount: A:0.25, C:0.13, G:0.24, T:0.38
Consensus pattern (28 bp):
TTTGTGGCGATCTCTGTAAAAGGAAGCA
Found at i:81279884 original size:47 final size:47
Alignment explanation
Indices: 81279817--81279939 Score: 210
Period size: 47 Copynumber: 2.6 Consensus size: 47
81279807 ATCCATAAGT
*
81279817 GAACTTGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
* *
81279864 GAACTCGGACTCAACTCAACGAGCTCGGATGTCTAGTTACATCTCAT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
*
81279911 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGCTCGGA
81279940 ACTCAACCAT
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:81288876 original size:413 final size:413
Alignment explanation
Indices: 81288109--81288930 Score: 1644
Period size: 413 Copynumber: 2.0 Consensus size: 413
81288099 GCTCTATGAT
81288109 TTCAAATATAGCCTAATTAGGACTCAAATTATTCAAATCAACACAAAATCATTTTTGGAAAAATT
1 TTCAAATATAGCCTAATTAGGACTCAAATTATTCAAATCAACACAAAATCATTTTTGGAAAAATT
81288174 ACAATTTTGCCCCTAAACTTTCACATATTTACACTTTTCCCCAAATCTCGTAAACTAAACTTCAT
66 ACAATTTTGCCCCTAAACTTTCACATATTTACACTTTTCCCCAAATCTCGTAAACTAAACTTCAT
81288239 TCTATTTTCTTATGTTTTATGATATGCTGATCATTTTTCCCTTCTACAACAACCTCCAATTCTCA
131 TCTATTTTCTTATGTTTTATGATATGCTGATCATTTTTCCCTTCTACAACAACCTCCAATTCTCA
81288304 CTCTAACATGTACTTATGAACATTAGGTATTTTCACTGATTATGTCATTTTAGTCATTTTTACGT
196 CTCTAACATGTACTTATGAACATTAGGTATTTTCACTGATTATGTCATTTTAGTCATTTTTACGT
81288369 AAAATCACTTCGCAAAAGTTGTTTAACACAATCTCAAGCTTCATATTCTACCATAAAACATCAAA
261 AAAATCACTTCGCAAAAGTTGTTTAACACAATCTCAAGCTTCATATTCTACCATAAAACATCAAA
81288434 ATTTGTGCATATCATTCATGGGTAAATTTTTAAATATAAACCCTAGCTCAAAATATTGGTAGAAA
326 ATTTGTGCATATCATTCATGGGTAAATTTTTAAATATAAACCCTAGCTCAAAATATTGGTAGAAA
81288499 CAGGTAAACCGAGCTACGATTTA
391 CAGGTAAACCGAGCTACGATTTA
81288522 TTCAAATATAGCCTAATTAGGACTCAAATTATTCAAATCAACACAAAATCATTTTTGGAAAAATT
1 TTCAAATATAGCCTAATTAGGACTCAAATTATTCAAATCAACACAAAATCATTTTTGGAAAAATT
81288587 ACAATTTTGCCCCTAAACTTTCACATATTTACACTTTTCCCCAAATCTCGTAAACTAAACTTCAT
66 ACAATTTTGCCCCTAAACTTTCACATATTTACACTTTTCCCCAAATCTCGTAAACTAAACTTCAT
81288652 TCTATTTTCTTATGTTTTATGATATGCTGATCATTTTTCCCTTCTACAACAACCTCCAATTCTCA
131 TCTATTTTCTTATGTTTTATGATATGCTGATCATTTTTCCCTTCTACAACAACCTCCAATTCTCA
81288717 CTCTAACATGTACTTATGAACATTAGGTATTTTCACTGATTATGTCATTTTAGTCATTTTTACGT
196 CTCTAACATGTACTTATGAACATTAGGTATTTTCACTGATTATGTCATTTTAGTCATTTTTACGT
81288782 AAAATCACTTCGCAAAAGTTGTTTAACACAATCTCAAGCTTCATATTCTACCATAAAACATCAAA
261 AAAATCACTTCGCAAAAGTTGTTTAACACAATCTCAAGCTTCATATTCTACCATAAAACATCAAA
81288847 ATTTGTGCATATCATTCATGGGTAAATTTTTAAATATAAACCCTAGCTCAAAATATTGGTAGAAA
326 ATTTGTGCATATCATTCATGGGTAAATTTTTAAATATAAACCCTAGCTCAAAATATTGGTAGAAA
81288912 CAGGTAAACCGAGCTACGA
391 CAGGTAAACCGAGCTACGA
81288931 GGATTTCAAA
Statistics
Matches: 409, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
413 409 1.00
ACGTcount: A:0.35, C:0.20, G:0.09, T:0.36
Consensus pattern (413 bp):
TTCAAATATAGCCTAATTAGGACTCAAATTATTCAAATCAACACAAAATCATTTTTGGAAAAATT
ACAATTTTGCCCCTAAACTTTCACATATTTACACTTTTCCCCAAATCTCGTAAACTAAACTTCAT
TCTATTTTCTTATGTTTTATGATATGCTGATCATTTTTCCCTTCTACAACAACCTCCAATTCTCA
CTCTAACATGTACTTATGAACATTAGGTATTTTCACTGATTATGTCATTTTAGTCATTTTTACGT
AAAATCACTTCGCAAAAGTTGTTTAACACAATCTCAAGCTTCATATTCTACCATAAAACATCAAA
ATTTGTGCATATCATTCATGGGTAAATTTTTAAATATAAACCCTAGCTCAAAATATTGGTAGAAA
CAGGTAAACCGAGCTACGATTTA
Found at i:81294472 original size:20 final size:20
Alignment explanation
Indices: 81294433--81294472 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
81294423 ACCCACAAAA
** *
81294433 TATTTTTTTTCTTTTTTTTG
1 TATTTTTTTTCACTTCTTTG
81294453 TATTTTTTTTCACTTCTTTG
1 TATTTTTTTTCACTTCTTTG
81294473 ATCACTTTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.07, C:0.10, G:0.05, T:0.78
Consensus pattern (20 bp):
TATTTTTTTTCACTTCTTTG
Found at i:81296853 original size:29 final size:31
Alignment explanation
Indices: 81296820--81296878 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 31
81296810 AATGTGTATC
*
81296820 TATTTATT-TAATGGATGAAAT-T-GAGATAA
1 TATTTATTATAATAGAT-AAATATGGAGATAA
81296849 TATTTATTATAATAGATAAATATGGAGATA
1 TATTTATTATAATAGATAAATATGGAGATA
81296879 TTAGATTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
29 12 0.46
30 8 0.31
31 6 0.23
ACGTcount: A:0.44, C:0.00, G:0.15, T:0.41
Consensus pattern (31 bp):
TATTTATTATAATAGATAAATATGGAGATAA
Found at i:81314214 original size:34 final size:34
Alignment explanation
Indices: 81314161--81314257 Score: 117
Period size: 34 Copynumber: 2.9 Consensus size: 34
81314151 ATGCATTTTG
* * *
81314161 GATATTGT-ACTGAAATGGGCTAAGGCCTACACT
1 GATACTGTGACTGATATGGGCTAAGGCCCACACT
*
81314194 GATACTGTTACTG-TATTGGGCTAAGGCCCACACT
1 GATACTGTGACTGATA-TGGGCTAAGGCCCACACT
* *
81314228 GATATTGTGACTGATATGGGCTTAGGCCCA
1 GATACTGTGACTGATATGGGCTAAGGCCCA
81314258 GACCGTTCAA
Statistics
Matches: 55, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
33 8 0.15
34 45 0.82
35 2 0.04
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (34 bp):
GATACTGTGACTGATATGGGCTAAGGCCCACACT
Found at i:81315664 original size:27 final size:22
Alignment explanation
Indices: 81315634--81315689 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 22
81315624 AAATATTATT
81315634 AAAACTCTTCTAAAAGAAAACTCAAGA
1 AAAACTCTT-TAAAA-AAAA---AAGA
*
81315661 AAAATTCTTTAAAAAAAAAAGA
1 AAAACTCTTTAAAAAAAAAAGA
81315683 AAAACTC
1 AAAACTC
81315690 AAACAAAAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
22 10 0.37
25 4 0.15
26 5 0.19
27 8 0.30
ACGTcount: A:0.61, C:0.14, G:0.05, T:0.20
Consensus pattern (22 bp):
AAAACTCTTTAAAAAAAAAAGA
Found at i:81322441 original size:92 final size:92
Alignment explanation
Indices: 81322284--81322464 Score: 267
Period size: 92 Copynumber: 2.0 Consensus size: 92
81322274 TTTGACATGA
* * * * * *
81322284 TGCCATAGTGTCTTTCAACTATGGTCATACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATAGTATCTTTCAACCATAGTCATACACATTTTCTATCAGGTTGCCATGGTATCTTTCAAC
81322349 CATGGTCTTACACATTTCATATCAAGT
66 CATGGTCTTACACATTTCATATCAAGT
*
81322376 TGCCATAGTATCTTTCAACCATAGTCTTACACA-TTTCATATCAGGCTT-CCATGGTATCTTTCA
1 TGCCATAGTATCTTTCAACCATAGTCATACACATTTTC-TATCAGG-TTGCCATGGTATCTTTCA
81322439 ACCATGGTCTTACACATTTCATATCA
64 ACCATGGTCTTACACATTTCATATCA
81322465 GAGAGCACAC
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
91 4 0.05
92 74 0.93
93 2 0.03
ACGTcount: A:0.25, C:0.24, G:0.12, T:0.39
Consensus pattern (92 bp):
TGCCATAGTATCTTTCAACCATAGTCATACACATTTTCTATCAGGTTGCCATGGTATCTTTCAAC
CATGGTCTTACACATTTCATATCAAGT
Found at i:81322465 original size:46 final size:46
Alignment explanation
Indices: 81322284--81322465 Score: 242
Period size: 46 Copynumber: 4.0 Consensus size: 46
81322274 TTTGACATGA
* * * * * * *
81322284 TGCCATAGTGTCTTTCAACTATGGTCATACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*
81322330 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAAGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
81322376 TGCCATAGTATCTTTCAACCATAGTCTTACACATTTCATATCAGGCT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGG-T
81322423 T-CCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
81322466 AGAGCACACT
Statistics
Matches: 122, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
45 4 0.03
46 116 0.95
47 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:81324881 original size:29 final size:30
Alignment explanation
Indices: 81324831--81324898 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
81324821 CATCCTTAAA
* * *
81324831 ATATTTTCACTATTAGTCCTTCAACTTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTC
*
81324861 ATATTTACACT-TTAATCCTTCAAATTTTG
1 ATATTTACACTATTAATCCTTCAAATTTTC
81324890 AGTATTTAC
1 A-TATTTAC
81324899 TCTTGGGCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.28, C:0.19, G:0.04, T:0.49
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTC
Found at i:81327229 original size:10 final size:11
Alignment explanation
Indices: 81327211--81327285 Score: 57
Period size: 10 Copynumber: 7.1 Consensus size: 11
81327201 ATATTGTTAT
81327211 ACATGATATG-
1 ACATGATATGC
*
81327221 ACATAATATGC
1 ACATGATATGC
81327232 ACATGATATG-
1 ACATGATATGC
** *
81327242 TTATGAGATGC
1 ACATGATATGC
81327253 ACATGATATGC
1 ACATGATATGC
* *
81327264 -TATGATATAC
1 ACATGATATGC
* *
81327274 TCATTATATGC
1 ACATGATATGC
81327285 A
1 A
81327286 TGGGTTGGGT
Statistics
Matches: 48, Mismatches: 14, Indels: 5
0.72 0.21 0.07
Matches are distributed among these distances:
10 24 0.50
11 24 0.50
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.33
Consensus pattern (11 bp):
ACATGATATGC
Found at i:81327267 original size:21 final size:21
Alignment explanation
Indices: 81327211--81327268 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
81327201 ATATTGTTAT
* *
81327211 ACATGATATGAC-ATAATATGC
1 ACATGATATG-CTATGAGATGC
*
81327232 ACATGATATGTTATGAGATGC
1 ACATGATATGCTATGAGATGC
81327253 ACATGATATGCTATGA
1 ACATGATATGCTATGA
81327269 TATACTCATT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (21 bp):
ACATGATATGCTATGAGATGC
Found at i:81335341 original size:21 final size:21
Alignment explanation
Indices: 81335315--81335367 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
81335305 ATATTGTGAT
* *
81335315 ACATGATGTGACATAATATGC
1 ACATGATATGACATAAGATGC
**
81335336 ACATGATATGTTATAAGATGC
1 ACATGATATGACATAAGATGC
81335357 ACATGATATGA
1 ACATGATATGA
81335368 TATGATATAC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.40, C:0.11, G:0.19, T:0.30
Consensus pattern (21 bp):
ACATGATATGACATAAGATGC
Found at i:81338843 original size:47 final size:47
Alignment explanation
Indices: 81338762--81338924 Score: 138
Period size: 46 Copynumber: 3.5 Consensus size: 47
81338752 GCCAATGCTG
* * ** *
81338762 TGTCCCAGACACGGTCTTCCACTGGCTTATATCTC-AAGTCGAAGCCA
1 TGTCCCAGACATGGTCTTACACTAACTTATATCTCGAAGCCGAAG-CA
* *
81338809 TGTCCCAGACATGGTCTTACACTAAC-TATCATCTCGTAGCCGACGCA
1 TGTCCCAGACATGGTCTTACACTAACTTAT-ATCTCGAAGCCGAAGCA
** ** * *
81338856 TGTCCCAGACAT-GTCTTACACTGGCTTACGTATCGAGGCCGATA-CA
1 TGTCCCAGACATGGTCTTACACTAACTTATATCTCGAAGCCGA-AGCA
*
81338902 TGTCCCAAACAT-GTCTTACACTA
1 TGTCCCAGACATGGTCTTACACTA
81338925 GAACTCATCT
Statistics
Matches: 95, Mismatches: 17, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
46 46 0.48
47 43 0.45
48 6 0.06
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (47 bp):
TGTCCCAGACATGGTCTTACACTAACTTATATCTCGAAGCCGAAGCA
Found at i:81341650 original size:19 final size:20
Alignment explanation
Indices: 81341610--81341653 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
81341600 AGCACATGCA
* *
81341610 TTCA-TAAATTTTAGAATTT
1 TTCATTAAATTTTACAATCT
81341629 TTCATTAAATTTTACAA-CT
1 TTCATTAAATTTTACAATCT
81341648 TTCATT
1 TTCATT
81341654 TTAGTCCCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 11 0.50
20 11 0.50
ACGTcount: A:0.34, C:0.11, G:0.02, T:0.52
Consensus pattern (20 bp):
TTCATTAAATTTTACAATCT
Found at i:81342432 original size:9 final size:9
Alignment explanation
Indices: 81342418--81342444 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
81342408 ACCATCAAAC
81342418 TTCATACAT
1 TTCATACAT
81342427 TTCATACAT
1 TTCATACAT
81342436 TTCATACAT
1 TTCATACAT
81342445 GCATGATCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.22, G:0.00, T:0.44
Consensus pattern (9 bp):
TTCATACAT
Found at i:81344163 original size:25 final size:25
Alignment explanation
Indices: 81344116--81344163 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
81344106 TAAATTCGTA
* *
81344116 TTGAGTTTAATATGTTTGATGATTG
1 TTGAATTTAATATGTATGATGATTG
81344141 TTGAATTTAATTATGTATG-TGAT
1 TTGAATTTAA-TATGTATGATGAT
81344164 CATATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 13 0.65
26 7 0.35
ACGTcount: A:0.27, C:0.00, G:0.21, T:0.52
Consensus pattern (25 bp):
TTGAATTTAATATGTATGATGATTG
Found at i:81354277 original size:40 final size:40
Alignment explanation
Indices: 81354177--81354278 Score: 159
Period size: 40 Copynumber: 2.5 Consensus size: 40
81354167 CTATCTCAGT
* * *
81354177 ATCGCATACATAGTGCCTCAAATAGCAGAAGCTATTTTGA
1 ATCGCACACTTAGTGCCTCATATAGCAGAAGCTATTTTGA
* *
81354217 ATTGCACACTTAGTGCCTCATATAGCCGAAGCTATTTTGA
1 ATCGCACACTTAGTGCCTCATATAGCAGAAGCTATTTTGA
81354257 ATCGCACACTTAGTGCCTCATA
1 ATCGCACACTTAGTGCCTCATA
81354279 CCATTGATTT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 56 1.00
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (40 bp):
ATCGCACACTTAGTGCCTCATATAGCAGAAGCTATTTTGA
Found at i:81358855 original size:48 final size:48
Alignment explanation
Indices: 81358783--81359044 Score: 364
Period size: 48 Copynumber: 5.5 Consensus size: 48
81358773 TGTGTAACCA
* * * * *
81358783 TGTAAGACCATATCTAGGATATGGCATCGGCATTATTATGTGATCCCA-
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGTGA-GCCAG
** *
81358831 CATAAGACCATGTCTGGGACATGGCATCGACATTGTTATGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGTGAGCCAG
* *
81358879 TGTAAGACCATGTCTGGGACATGGCATCAGCATTTTTATGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGTGAGCCAG
* **
81358927 TGTAAGACCATGTCTGGGACATGGCATCGACATTGTTACATGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGTGAGCCAG
* * *
81358975 TGTAAGACCATGTCTGGGACATGGCATCAGCATCGTTATGTGAGCGAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGTGAGCCAG
81359023 TGTAAGACCATGTCTGGGACAT
1 TGTAAGACCATGTCTGGGACAT
81359045 AGCACTGGCA
Statistics
Matches: 189, Mismatches: 24, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
47 3 0.02
48 186 0.98
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTATGTGAGCCAG
Found at i:81359520 original size:117 final size:117
Alignment explanation
Indices: 81359314--81359527 Score: 419
Period size: 117 Copynumber: 1.8 Consensus size: 117
81359304 TTTGGTAAGA
81359314 ATGTAAATGAGTAAGTCCTACCTATGAAAATGATCTTGTGATGACCTTGTGATTATAAGTCTATA
1 ATGTAAATGAGTAAGTCCTACCTATGAAAATGATCTTGTGATGACCTTGTGATTATAAGTCTATA
*
81359379 CTTATGATGTATAAATAAGTGGTAAATTTGATAAGTTTAAGTTTTTTTGTTG
66 CTTATGATGTATAAATAACTGGTAAATTTGATAAGTTTAAGTTTTTTTGTTG
81359431 ATGTAAATGAGTAAGTCCTACCTATGAAAATGATCTTGTGATGACCTTGTGATTATAAGTCTATA
1 ATGTAAATGAGTAAGTCCTACCTATGAAAATGATCTTGTGATGACCTTGTGATTATAAGTCTATA
81359496 CTTATGATGTATAAATAACTGGTAAATTTGAT
66 CTTATGATGTATAAATAACTGGTAAATTTGAT
81359528 TGATGATCAT
Statistics
Matches: 96, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
117 96 1.00
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.39
Consensus pattern (117 bp):
ATGTAAATGAGTAAGTCCTACCTATGAAAATGATCTTGTGATGACCTTGTGATTATAAGTCTATA
CTTATGATGTATAAATAACTGGTAAATTTGATAAGTTTAAGTTTTTTTGTTG
Found at i:81361122 original size:47 final size:46
Alignment explanation
Indices: 81361067--81361186 Score: 134
Period size: 46 Copynumber: 2.6 Consensus size: 46
81361057 CATTTGTGAG
* *
81361067 AGCTAGTGTAAGATATGTCTGGGACATGGCATCGGCATTGAGACG-A
1 AGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCATCGAGACGTA
* * * * * *
81361113 GTGCTAGTGTATGACACGTTTGGGACATGCATCGGCCTCGAGATGTA
1 -AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGTA
*
81361160 AGCCAGTGTAAGACATGTCTGGGACAT
1 AGCTAGTGTAAGACATGTCTGGGACAT
81361187 ACGTTGGCTA
Statistics
Matches: 59, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
46 36 0.61
47 23 0.39
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.25
Consensus pattern (46 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGTA
Found at i:81361203 original size:46 final size:48
Alignment explanation
Indices: 81361153--81361280 Score: 124
Period size: 47 Copynumber: 2.7 Consensus size: 48
81361143 ATCGGCCTCG
*
81361153 AGATGTAAGCCAGTGTAAGACATGTCTGGGACATAC-G-TT-GGCTACA
1 AGATGTAAGCCAGTGTAAGACATGTCTGGGACATACGGCTTCGACT-CA
* * **
81361199 AGATG-ATAGTCAGTGTAAGAGCATATCTGGGAC--ACGGCTTCGACTTG
1 AGATGTA-AGCCAGTGTAAGA-CATGTCTGGGACATACGGCTTCGACTCA
*
81361246 AGATATAAGCCAGTGTAAGACTATGTCTGGGACAT
1 AGATGTAAGCCAGTGTAAGAC-ATGTCTGGGACAT
81361281 GGCATCGACA
Statistics
Matches: 65, Mismatches: 8, Indels: 15
0.74 0.09 0.17
Matches are distributed among these distances:
45 3 0.05
46 19 0.29
47 39 0.60
48 4 0.06
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.25
Consensus pattern (48 bp):
AGATGTAAGCCAGTGTAAGACATGTCTGGGACATACGGCTTCGACTCA
Found at i:81365565 original size:21 final size:21
Alignment explanation
Indices: 81365528--81365586 Score: 84
Period size: 21 Copynumber: 2.9 Consensus size: 21
81365518 TGATCAGTAT
*
81365528 ACGACACATAA-GTGCCTGAA
1 ACGACACACAAGGTGCCTGAA
* *
81365548 ACGACACACGAGGTGCCTGAT
1 ACGACACACAAGGTGCCTGAA
81365569 ACGACACACAAGGTGCCT
1 ACGACACACAAGGTGCCT
81365587 AAAATACGAC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 9 0.26
21 25 0.74
ACGTcount: A:0.34, C:0.29, G:0.24, T:0.14
Consensus pattern (21 bp):
ACGACACACAAGGTGCCTGAA
Found at i:81365593 original size:23 final size:21
Alignment explanation
Indices: 81365526--81365599 Score: 80
Period size: 21 Copynumber: 3.5 Consensus size: 21
81365516 CCTGATCAGT
*
81365526 ATACGACACATAA-GTGCCTGA
1 ATACGACACACAAGGTGCCT-A
* *
81365547 A-ACGACACACGAGGTGCCTG
1 ATACGACACACAAGGTGCCTA
81365567 ATACGACACACAAGGTGCCTAAA
1 ATACGACACACAAGGTGCCT--A
81365590 ATACGACACA
1 ATACGACACA
81365600 TAAAGTGTCT
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
20 10 0.23
21 24 0.55
23 10 0.23
ACGTcount: A:0.39, C:0.27, G:0.20, T:0.14
Consensus pattern (21 bp):
ATACGACACACAAGGTGCCTA
Found at i:81365612 original size:44 final size:41
Alignment explanation
Indices: 81365526--81365612 Score: 93
Period size: 44 Copynumber: 2.0 Consensus size: 41
81365516 CCTGATCAGT
* * * *
81365526 ATACGACACATAAGTGCCTGAAACGACACACGAGGTGCCTG
1 ATACGACACACAAGTGCCTAAAACGACACACAAAGTGCCTG
* *
81365567 ATACGACACACAAGGTGCCTAAAATACGACACATAAAGTGTCTG
1 ATACGACACACAA-GTGCCT-AAA-ACGACACACAAAGTGCCTG
81365611 AT
1 AT
81365613 CAGTATAGCC
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
41 12 0.32
42 6 0.16
43 2 0.05
44 17 0.46
ACGTcount: A:0.38, C:0.24, G:0.21, T:0.17
Consensus pattern (41 bp):
ATACGACACACAAGTGCCTAAAACGACACACAAAGTGCCTG
Found at i:81365828 original size:23 final size:24
Alignment explanation
Indices: 81365802--81365896 Score: 84
Period size: 28 Copynumber: 3.6 Consensus size: 24
81365792 AAATGTCCAA
81365802 CCAAAACACACCAG-TATAATCCT
1 CCAAAACACACCAGATATAATCCT
*
81365825 CCAAAACACACTAGTATCATATAATCCT
1 CCAAAACACACCAG----ATATAATCCT
*
81365853 CCCAAACACACCAGAATAATATAATCCAT
1 CCAAAACACACCAG----ATATAATCC-T
81365882 CCAAAACACACCAGA
1 CCAAAACACACCAGA
81365897 ATAGCACAAA
Statistics
Matches: 60, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
23 13 0.22
25 1 0.02
28 32 0.53
29 14 0.23
ACGTcount: A:0.46, C:0.33, G:0.04, T:0.17
Consensus pattern (24 bp):
CCAAAACACACCAGATATAATCCT
Found at i:81365898 original size:29 final size:28
Alignment explanation
Indices: 81365816--81365899 Score: 123
Period size: 28 Copynumber: 3.0 Consensus size: 28
81365806 AACACACCAG
* * *
81365816 TATAATCCTCCAAAACACACTAGTATCA
1 TATAATCCTCCAAAACACACCAGAATAA
*
81365844 TATAATCCTCCCAAACACACCAGAATAA
1 TATAATCCTCCAAAACACACCAGAATAA
81365872 TATAATCCATCCAAAACACACCAGAATA
1 TATAATCC-TCCAAAACACACCAGAATA
81365900 GCACAAAGTG
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 32 0.64
29 18 0.36
ACGTcount: A:0.46, C:0.30, G:0.04, T:0.20
Consensus pattern (28 bp):
TATAATCCTCCAAAACACACCAGAATAA
Found at i:81366094 original size:17 final size:16
Alignment explanation
Indices: 81366054--81366094 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 16
81366044 TTCCAGTTTC
81366054 CAATCAATACACATTT
1 CAATCAATACACATTT
81366070 CAATCAAT-CACATATT
1 CAATCAATACACAT-TT
81366086 CATATCAAT
1 CA-ATCAAT
81366095 TTCATCACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.22
16 12 0.52
17 6 0.26
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (16 bp):
CAATCAATACACATTT
Found at i:81366121 original size:27 final size:25
Alignment explanation
Indices: 81366054--81366125 Score: 67
Period size: 27 Copynumber: 2.7 Consensus size: 25
81366044 TTCCAGTTTC
81366054 CAATCAAT-ACACATTTCAATCAATCA
1 CAATCAATAACA-ATTTC-ATCAATCA
*
81366080 CATATTC-ATATCAATTTCATCACATTCA
1 CA-A-TCAATAACAATTTCATCA-A-TCA
81366108 CAATCAATAACAATTTCA
1 CAATCAATAACAATTTCA
81366126 AATATAACAT
Statistics
Matches: 38, Mismatches: 2, Indels: 11
0.75 0.04 0.22
Matches are distributed among these distances:
26 8 0.21
27 21 0.55
28 9 0.24
ACGTcount: A:0.43, C:0.25, G:0.00, T:0.32
Consensus pattern (25 bp):
CAATCAATAACAATTTCATCAATCA
Found at i:81387174 original size:43 final size:43
Alignment explanation
Indices: 81387107--81387231 Score: 189
Period size: 43 Copynumber: 2.9 Consensus size: 43
81387097 CTGAACTCAT
* **
81387107 TCACCGGCATTA-CGCCTGCTAGGCTCGAAGCCTGATATTAAC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCAATATTAAC
81387149 TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCAATATTAAC
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCAATATTAAC
*
81387192 TCACCGGCATTATAGCCTGCTAGGCTAGAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCGAA-GCCC-AATA
81387232 GTACCGTACG
Statistics
Matches: 76, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
42 12 0.16
43 56 0.74
44 4 0.05
45 4 0.05
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.22
Consensus pattern (43 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCAATATTAAC
Found at i:81389815 original size:10 final size:9
Alignment explanation
Indices: 81389791--81389821 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
81389781 TTCAAAGATC
81389791 TCAAAAACA
1 TCAAAAACA
81389800 TCAAAAACA
1 TCAAAAACA
81389809 TCAAAAACTA
1 TCAAAAAC-A
81389819 TCA
1 TCA
81389822 CCAAAATGAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 17 0.81
10 4 0.19
ACGTcount: A:0.61, C:0.23, G:0.00, T:0.16
Consensus pattern (9 bp):
TCAAAAACA
Found at i:81390179 original size:35 final size:35
Alignment explanation
Indices: 81390133--81390203 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
81390123 CCACATAAGC
81390133 ACATGACGTTATAAATGATGTCATCTATTTAACAA
1 ACATGACGTTATAAATGATGTCATCTATTTAACAA
81390168 ACATGACGTTATAAATGATGTCATCTATTTAACAA
1 ACATGACGTTATAAATGATGTCATCTATTTAACAA
81390203 A
1 A
81390204 ATTTTTTCTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.34
Consensus pattern (35 bp):
ACATGACGTTATAAATGATGTCATCTATTTAACAA
Found at i:81390249 original size:22 final size:21
Alignment explanation
Indices: 81390215--81390257 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
81390205 TTTTTTCTCT
*
81390215 CATTTTGTCTCTTGCTAAACAC
1 CATTTTGTCTCTT-CAAAACAC
* *
81390237 CATTTTTTTTCTTCAAAACAC
1 CATTTTGTCTCTTCAAAACAC
81390258 ATGGTCTGCC
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.26, C:0.26, G:0.05, T:0.44
Consensus pattern (21 bp):
CATTTTGTCTCTTCAAAACAC
Found at i:81390283 original size:66 final size:66
Alignment explanation
Indices: 81390205--81390338 Score: 191
Period size: 66 Copynumber: 2.0 Consensus size: 66
81390195 TTTAACAAAA
* * *
81390205 TTTTTTCTCTCATTTTGTCTCTTGCTAAACACCATTTTT-TTTCTTCAAAACACATGGTCTGC-C
1 TTTTTTCTCTCATTTTCTCTCTTACCAAACACCATTTTTCTTT-TTCAAAACACATGGTCTGCTC
81390268 AT
65 AT
* *
81390270 TTTTTTCCTCTCATTTTCTCTCTTACCAAACACCATTTTTCTTTTTCAAAACATATGGTTTGCTC
1 TTTTTT-CTCTCATTTTCTCTCTTACCAAACACCATTTTTCTTTTTCAAAACACATGGTCTGCTC
81390335 AT
65 AT
81390337 TT
1 TT
81390339 CATTTACAAG
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
65 6 0.10
66 47 0.77
67 8 0.13
ACGTcount: A:0.20, C:0.25, G:0.06, T:0.49
Consensus pattern (66 bp):
TTTTTTCTCTCATTTTCTCTCTTACCAAACACCATTTTTCTTTTTCAAAACACATGGTCTGCTCA
T
Found at i:81398320 original size:48 final size:50
Alignment explanation
Indices: 81398244--81398378 Score: 166
Period size: 48 Copynumber: 2.7 Consensus size: 50
81398234 CACATAATTA
* * *
81398244 GATGCCAATGCCATATCCTAGATATGGTCTTACATGGCATCAC-CA-CTC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGCATCACACATCTC
* * * * * *
81398292 GATGTCAATGCCATGTCCCAAACATGGTCTTACATGGGATCTCATATGTC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGCATCACACATCTC
*
81398342 AATGCCAATGCCATGTCCCAGACATGGTCTTACATGG
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGG
81398379 GATCTCATAT
Statistics
Matches: 73, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
48 36 0.49
49 1 0.01
50 36 0.49
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (50 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGCATCACACATCTC
Found at i:81398360 original size:50 final size:50
Alignment explanation
Indices: 81398245--81398389 Score: 186
Period size: 50 Copynumber: 2.9 Consensus size: 50
81398235 ACATAATTAG
* * * * * * *
81398245 ATGCCAATGCCATATCCTAGATATGGTCTTACATGGCATCAC-CA-CTCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATCTCA
* * *
81398293 ATGTCAATGCCATGTCCCAAACATGGTCTTACATGGGATCTCATATGTCA
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATCTCA
81398343 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATC
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATC
81398390 AACGCCATAT
Statistics
Matches: 82, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
48 35 0.43
49 1 0.01
50 46 0.56
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (50 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCATATCTCA
Found at i:81398416 original size:92 final size:94
Alignment explanation
Indices: 81398245--81398419 Score: 219
Period size: 98 Copynumber: 1.8 Consensus size: 94
81398235 ACATAATTAG
* * * * *
81398245 ATGCCAATGCCATATCCTAGATATGGTCTTACATGGCATCACCACTCGATGTCAATGCCATGTCC
1 ATGCCAATGCCATATCCCAGACATGGTCTTACATGGCAT---C-CTCGATATCAACGCCATATCC
*
81398310 CAAACATGGTCTTACATGGGATCTCATATGTCA
62 CAAACATAGTCTTACATGGGATCTCATATGTCA
* *
81398343 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT-CTC-ATATCAACGCCATATCCCAAA
1 ATGCCAATGCCATATCCCAGACATGGTCTTACATGGCATCCTCGATATCAACGCCATATCCCAAA
*
81398406 TATAGTCTTACATG
66 CATAGTCTTACATG
81398420 ATAACACATA
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
92 30 0.44
93 3 0.04
98 35 0.51
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.28
Consensus pattern (94 bp):
ATGCCAATGCCATATCCCAGACATGGTCTTACATGGCATCCTCGATATCAACGCCATATCCCAAA
CATAGTCTTACATGGGATCTCATATGTCA
Found at i:81401802 original size:48 final size:48
Alignment explanation
Indices: 81401740--81402143 Score: 673
Period size: 48 Copynumber: 8.4 Consensus size: 48
81401730 TATATATGTG
81401740 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
81401788 TGTGGTAAAGCCGAATGGTTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
** *
81401836 TGCAGTAAAGCCGAATGGCTAATATGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
81401884 TGTGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
81401932 CGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
81401980 TGTGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
81402028 CGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
81402076 TGTGGTAAAGACGAATGGCTAATGCGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
81402124 TGTTGTAAAGCCGAATGGCT
1 TGTGGTAAAGCCGAATGGCT
81402144 GATTCGGCTA
Statistics
Matches: 334, Mismatches: 22, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 334 1.00
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:81402365 original size:37 final size:37
Alignment explanation
Indices: 81402314--81402412 Score: 171
Period size: 37 Copynumber: 2.7 Consensus size: 37
81402304 AAATATATTC
81402314 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
* *
81402351 GGTAAGACCGGATGACTACGTGTGGAGATTTTGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
*
81402388 GGTAAGACCCGATAACTACGTGTGG
1 GGTAAGACCCGATGACTACGTGTGG
81402413 GGACTATTCG
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.24, C:0.18, G:0.33, T:0.24
Consensus pattern (37 bp):
GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
Found at i:81405043 original size:46 final size:45
Alignment explanation
Indices: 81404929--81405060 Score: 147
Period size: 46 Copynumber: 2.9 Consensus size: 45
81404919 AGACTATTTG
* * * **
81404929 TTGTGTAGGTTCAACCCTAACGAGTGACCAGACACTATTATTTTAT
1 TTGTGTAGGTTCAA-CCTAATGGGTGACCAAACACTATTATTCGAT
* *
81404975 TTATGTAGGTTCAACCCCAATGGGTGACCAAACACTATTATTCGAT
1 TTGTGTAGGTTCAA-CCTAATGGGTGACCAAACACTATTATTCGAT
* * *
81405021 TTGTGTAGGTTTAACCTAAATGGGTAACCAAAAACTATTA
1 TTGTGTAGGTTCAACCT-AATGGGTGACCAAACACTATTA
81405061 CTTTCACCTG
Statistics
Matches: 73, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
45 2 0.03
46 71 0.97
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Consensus pattern (45 bp):
TTGTGTAGGTTCAACCTAATGGGTGACCAAACACTATTATTCGAT
Done.