Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 246 of 349
Found at i:81445167 original size:27 final size:27
Alignment explanation
Indices: 81445086--81445266 Score: 184
Period size: 27 Copynumber: 6.6 Consensus size: 27
81445076 ATATTGAGTC
* * * *
81445086 CGCACACTCAGATGCTATATAATCAACT
1 CGCACACTTAG-TGCTACATAGTCAAAT
* *
81445114 CGCCACACTTAGTTGCTACGTAATCAAAT
1 CG-CACACTTAG-TGCTACATAGTCAAAT
81445143 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
81445171 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
81445198 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
81445225 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
81445252 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
81445267 GTACAATTTA
Statistics
Matches: 130, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
27 72 0.55
28 35 0.27
29 23 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:81449414 original size:14 final size:14
Alignment explanation
Indices: 81449348--81449426 Score: 54
Period size: 15 Copynumber: 5.4 Consensus size: 14
81449338 CAAAGATAAC
*
81449348 AAGAAAACC-GAAT
1 AAGAAATCCAGAAT
81449361 AAAGAAATCCA-AGAT
1 -AAGAAATCCAGA-AT
* *
81449376 AGAGAAACCCGGAAT
1 A-AGAAATCCAGAAT
81449391 AAAGAAATCCAGAAT
1 -AAGAAATCCAGAAT
* *
81449406 AAGAGATCCAGGAT
1 AAGAAATCCAGAAT
81449420 AAAGAAA
1 -AAGAAA
81449427 CCCAAGATAC
Statistics
Matches: 51, Mismatches: 8, Indels: 11
0.73 0.11 0.16
Matches are distributed among these distances:
14 22 0.43
15 27 0.53
16 2 0.04
ACGTcount: A:0.57, C:0.14, G:0.19, T:0.10
Consensus pattern (14 bp):
AAGAAATCCAGAAT
Found at i:81449435 original size:15 final size:15
Alignment explanation
Indices: 81449359--81449435 Score: 61
Period size: 15 Copynumber: 5.2 Consensus size: 15
81449349 AGAAAACCGA
81449359 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
81449374 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
81449388 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
81449403 A-ATAAGAGATCCAGG
1 ATA-AAGAAATCCAAG
*
81449418 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
81449433 ATA
1 ATA
81449436 CGATACTATG
Statistics
Matches: 47, Mismatches: 10, Indels: 10
0.70 0.15 0.15
Matches are distributed among these distances:
13 1 0.02
14 12 0.26
15 31 0.66
16 3 0.06
ACGTcount: A:0.55, C:0.16, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:81452419 original size:45 final size:45
Alignment explanation
Indices: 81452355--81452525 Score: 215
Period size: 45 Copynumber: 3.8 Consensus size: 45
81452345 TAACCCGCCC
*
81452355 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTT-GCATCCA
*
81452400 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTGCATCCA
* * *
81452448 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTGCATCCA
81452492 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
81452526 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 8, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 5 0.05
43 1 0.01
44 3 0.03
45 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTGCATCCA
Found at i:81452517 original size:92 final size:92
Alignment explanation
Indices: 81452360--81452528 Score: 304
Period size: 92 Copynumber: 1.8 Consensus size: 92
81452350 CGCCCTAAGT
*
81452360 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
81452425 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
*
81452452 GAACTCGGACTCAACTCAACGAGTTCGGACATT-GCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
81452516 CGAGTTCGGATGC
65 CGAGTTCGGATGC
81452529 TCAACCATCC
Statistics
Matches: 74, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 71 0.96
93 3 0.04
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:81459456 original size:28 final size:28
Alignment explanation
Indices: 81459393--81459543 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
81459383 ATATTAAGTC
*
81459393 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
81459420 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
81459448 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
81459476 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
81459504 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
81459533 CGCACACTTAG
1 CGCACACTTAG
81459544 CGCCAATCTC
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 21 0.19
28 76 0.67
29 16 0.14
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:81464508 original size:18 final size:18
Alignment explanation
Indices: 81464481--81464518 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
81464471 AAAATATTCA
* *
81464481 AAATATTTTTTATTTTTT
1 AAATAATTTTAATTTTTT
81464499 AAATAATTTTAATTTTTT
1 AAATAATTTTAATTTTTT
81464517 AA
1 AA
81464519 CACTTAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
AAATAATTTTAATTTTTT
Found at i:81464681 original size:22 final size:22
Alignment explanation
Indices: 81464656--81464703 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
81464646 ACAATTTGAT
*
81464656 AAAAAAGTATAAATTTAAAATTA
1 AAAAAAAT-TAAATTTAAAATTA
*
81464679 AAAAAAATTAAATTTAGAATTA
1 AAAAAAATTAAATTTAAAATTA
81464701 AAA
1 AAA
81464704 TATTATTTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 16 0.70
23 7 0.30
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (22 bp):
AAAAAAATTAAATTTAAAATTA
Found at i:81466080 original size:5 final size:5
Alignment explanation
Indices: 81466070--81466095 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
81466060 TTTTTAAATT
81466070 TTTTA TTTTA TTTTA TTTTA TTTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA T
81466096 ATTTTATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:81466109 original size:22 final size:22
Alignment explanation
Indices: 81466067--81466110 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
81466057 TAATTTTTAA
* * *
81466067 ATTTTTTATTTTATTTTATTTT
1 ATTTTATATTTTATATAATTTT
81466089 ATTTTATATTTTATATAATTTT
1 ATTTTATATTTTATATAATTTT
81466111 TTAAAAGAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (22 bp):
ATTTTATATTTTATATAATTTT
Found at i:81469583 original size:37 final size:37
Alignment explanation
Indices: 81469540--81469613 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
81469530 TTTTAAGAAT
81469540 GATTTACTATGGATACTTTTTGAGTTGATTAATGAGG
1 GATTTACTATGGATACTTTTTGAGTTGATTAATGAGG
81469577 GATTTACTATGGATACTTTTTGAGTTGATTAATGAGG
1 GATTTACTATGGATACTTTTTGAGTTGATTAATGAGG
81469614 AGTAATGTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.05, G:0.24, T:0.43
Consensus pattern (37 bp):
GATTTACTATGGATACTTTTTGAGTTGATTAATGAGG
Found at i:81473276 original size:21 final size:21
Alignment explanation
Indices: 81473250--81473301 Score: 104
Period size: 21 Copynumber: 2.5 Consensus size: 21
81473240 AGTGTCACAT
81473250 GCCCGTGTGGCTTTGGGACAC
1 GCCCGTGTGGCTTTGGGACAC
81473271 GCCCGTGTGGCTTTGGGACAC
1 GCCCGTGTGGCTTTGGGACAC
81473292 GCCCGTGTGG
1 GCCCGTGTGG
81473302 GTAGGCCGTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.08, C:0.29, G:0.40, T:0.23
Consensus pattern (21 bp):
GCCCGTGTGGCTTTGGGACAC
Found at i:81477270 original size:42 final size:41
Alignment explanation
Indices: 81477192--81477314 Score: 115
Period size: 42 Copynumber: 2.9 Consensus size: 41
81477182 TCTAGACGTG
** * *
81477192 GTCTTACATGAAATCAAATATCGATGCTACTGTCCCAG-ATA
1 GTCTTACACAAAATCAAATA-CGATGCCAATGTCCCAGAATA
*
81477233 GGATCTTACACAAAATCATATACGATGCCAATGTCCCAGACATA
1 -G-TCTTACACAAAATCAAATACGATGCCAATGTCCCAGA-ATA
*
81477277 GTCTTACACGTAAATCCCAAAT-CGATGCCAATGTCCCA
1 GTCTTACAC-AAAAT--CAAATACGATGCCAATGTCCCA
81477315 AACGTGGTCT
Statistics
Matches: 68, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
42 24 0.35
43 21 0.31
44 19 0.28
45 4 0.06
ACGTcount: A:0.35, C:0.26, G:0.14, T:0.25
Consensus pattern (41 bp):
GTCTTACACAAAATCAAATACGATGCCAATGTCCCAGAATA
Found at i:81492522 original size:56 final size:56
Alignment explanation
Indices: 81492436--81492611 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
81492426 ACAAGGGATG
81492436 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
81492492 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
81492548 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
81492604 ATGGGCAA
1 ATGGGCAA
81492612 TAAACTAATA
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:81493841 original size:39 final size:40
Alignment explanation
Indices: 81493740--81493902 Score: 158
Period size: 39 Copynumber: 4.1 Consensus size: 40
81493730 TCGAATGATG
* * *
81493740 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGA-T-ACTATA
* *
81493780 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTA-A
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGATACTATA
*
81493819 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGATACTATA
* * **
81493859 ACCGGGCT-ATACCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGATA-CTATA
81493898 TCCGG
1 TCCGG
81493903 TTAAATTCCG
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
38 3 0.03
39 59 0.57
40 32 0.31
41 9 0.09
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGATACTATA
Found at i:81493902 original size:78 final size:80
Alignment explanation
Indices: 81493740--81493889 Score: 189
Period size: 79 Copynumber: 1.9 Consensus size: 80
81493730 TCGAATGATG
* *
81493740 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGACCCGAAGGCATTT
**
81493805 GTGCGAGATACTAAT
66 GAACGAGATACTAAT
* * * * *
81493820 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCT-ATACCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGACCCGAAGGCATT
81493882 TGAACGAG
65 TGAACGAG
81493890 TAGCTATATC
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
78 19 0.32
79 23 0.38
80 18 0.30
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGACCCGAAGGCATTT
GAACGAGATACTAAT
Found at i:81499767 original size:56 final size:56
Alignment explanation
Indices: 81499681--81499800 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
81499671 ACAAGGGATG
81499681 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
81499737 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
81499793 ATGGGCAA
1 ATGGGCAA
81499801 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:81501015 original size:40 final size:39
Alignment explanation
Indices: 81500931--81501115 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 39
81500921 TCGAATGATG
* * *
81500931 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
81500970 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT
*
81501011 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAT
*
81501050 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT
* *
81501089 AACCGGGCTATGACCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
81501116 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
39 36 0.29
40 79 0.64
41 9 0.07
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:81501067 original size:79 final size:81
Alignment explanation
Indices: 81500931--81501115 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
81500921 TCGAATGATG
* *
81500931 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
81500995 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
81501010 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
81501072 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
81501090 ACCGGGCTATGACCCGAAGGCATTTG
1 TCCGGGCTAAGACCCGAAGGCATTTG
81501116 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:81501137 original size:79 final size:79
Alignment explanation
Indices: 81500984--81501148 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
81500974 GGACTAAGAT
* **
81500984 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
81501049 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
81501063 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGACCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
81501126 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
81501142 CCGAAGG
1 CCGAAGG
81501149 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:81502944 original size:37 final size:37
Alignment explanation
Indices: 81502889--81502997 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
81502879 AGCTCAAACG
* *
81502889 AAATCTCCACATGAAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
81502926 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
81502963 TAATCTCCACACGTAGACATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
81502998 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:81503256 original size:47 final size:47
Alignment explanation
Indices: 81503204--81503397 Score: 262
Period size: 47 Copynumber: 4.1 Consensus size: 47
81503194 CATACATATT
* * * * *
81503204 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
*
81503251 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
* *
81503298 TCGCATTGGCCATTTGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
* * * * **
81503345 TCGCATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
81503392 TCACAT
1 TCACAT
81503398 AAAATCCTAT
Statistics
Matches: 131, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 131 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
Found at i:81510316 original size:40 final size:40
Alignment explanation
Indices: 81510169--81510309 Score: 246
Period size: 40 Copynumber: 3.5 Consensus size: 40
81510159 ATGATAAGCA
81510169 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCG
81510209 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCG
* ***
81510249 GGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCG
81510289 GGCTAAGTCCCGAAGGCATTT
1 GGCTAAGTCCCGAAGGCATTT
81510310 AAGCGAGTAG
Statistics
Matches: 97, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 97 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCG
Found at i:81510329 original size:80 final size:80
Alignment explanation
Indices: 81510169--81510329 Score: 243
Period size: 80 Copynumber: 2.0 Consensus size: 80
81510159 ATGATAAGCA
* *** **
81510169 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCGGGCTAAGTCCCGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAAACCGGGCTAAGTCCCGAAGGCATTTAAGC
*
81510234 GAGTTACTATTTCCG
66 GAGTTACTATATCCG
81510249 GGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAAACCGGGCTAAGTCCCGAAGGCATTTAAGC
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAAACCGGGCTAAGTCCCGAAGGCATTTAAGC
81510314 GAG-TAGCTATATCCG
66 GAGTTA-CTATATCCG
81510329 G
1 G
81510330 CAAAACCTGA
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
79 2 0.03
80 71 0.97
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAAACCGGGCTAAGTCCCGAAGGCATTTAAGC
GAGTTACTATATCCG
Found at i:81511921 original size:42 final size:43
Alignment explanation
Indices: 81511875--81511972 Score: 117
Period size: 44 Copynumber: 2.3 Consensus size: 43
81511865 TCCCAGGTAG
* * *
81511875 GGTCTTACACGAAATCATATA-TGGTGCCAAAGTCCCAGACAT
1 GGTCTTACACGAAATCACAAACTGATGCCAAAGTCCCAGACAT
* ** *
81511917 GGTCTTACATGTAAATCACAAACTGATGCCATTGTCCCAGACGT
1 GGTCTTACACG-AAATCACAAACTGATGCCAAAGTCCCAGACAT
81511961 GGTCTTACACGA
1 GGTCTTACACGA
81511973 TAATACATTT
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
42 10 0.22
43 9 0.20
44 27 0.59
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (43 bp):
GGTCTTACACGAAATCACAAACTGATGCCAAAGTCCCAGACAT
Found at i:81516395 original size:27 final size:27
Alignment explanation
Indices: 81516330--81516686 Score: 412
Period size: 27 Copynumber: 13.3 Consensus size: 27
81516320 TAGTTTACCA
* ** *
81516330 AATTACCAAAATACCCCTGGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
** *
81516357 AATTACTAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
81516384 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
81516411 AATTACCGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
81516438 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
81516465 AATTATTGCAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
81516492 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
81516519 AATTACCGAAATACCCCTCTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
81516546 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* ** *
81516573 AATTATCGCTATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
81516600 AATTAACGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
81516627 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
81516654 AATTATCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
81516680 AATTACC
1 AATTACC
81516687 ATTTTGCCCC
Statistics
Matches: 287, Mismatches: 42, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
26 17 0.06
27 270 0.94
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:81517165 original size:22 final size:22
Alignment explanation
Indices: 81517113--81517179 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 22
81517103 TTAAAGCCTT
* * *
81517113 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAA
*
81517135 CT-ACATATGGCTCTGTGCCAAA
1 CTGA-TTATGGCTCTGTGCCAAA
*
81517157 CTGATTATGGCTGTGTGCCAAA
1 CTGATTATGGCTCTGTGCCAAA
81517179 C
1 C
81517180 GTATTTGCCA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 35 0.95
23 1 0.03
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.33
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAA
Found at i:81517366 original size:27 final size:27
Alignment explanation
Indices: 81517336--81517434 Score: 119
Period size: 27 Copynumber: 3.7 Consensus size: 27
81517326 TTCTGTTAAT
* * *
81517336 TGGCTTTGCCACATTATCTGTTTCTTG
1 TGGCTATGCCACAATATCTGTTTCTGG
81517363 TGGCTATGCCACAAATATCTG-TTCTGG
1 TGGCTATGCCAC-AATATCTGTTTCTGG
* *
81517390 TGGCTCTGCCACAATATCTGTATCTGG
1 TGGCTATGCCACAATATCTGTTTCTGG
* *
81517417 TGACTATGTCACAATATC
1 TGGCTATGCCACAATATC
81517435 AGATAACTGA
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 8 0.13
27 47 0.76
28 7 0.11
ACGTcount: A:0.20, C:0.23, G:0.19, T:0.37
Consensus pattern (27 bp):
TGGCTATGCCACAATATCTGTTTCTGG
Found at i:81517613 original size:6 final size:6
Alignment explanation
Indices: 81517602--81517692 Score: 53
Period size: 6 Copynumber: 14.8 Consensus size: 6
81517592 TTACCTAATA
* * * *
81517602 CTGATT CTGATT TTGATT CTG-TT ACCTGATA CTGATT CTGATT TTAATT
1 CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT CTGATT
* * *
81517651 TTG-TCAC CTAATT CTGATT CTGATT CTGATT CT-AGTT CTGAT
1 CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGA-TT CTGAT
81517693 AATGTTTCTT
Statistics
Matches: 65, Mismatches: 12, Indels: 16
0.70 0.13 0.17
Matches are distributed among these distances:
5 4 0.06
6 54 0.83
7 5 0.08
8 2 0.03
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.49
Consensus pattern (6 bp):
CTGATT
Found at i:81517624 original size:31 final size:31
Alignment explanation
Indices: 81517573--81517683 Score: 150
Period size: 31 Copynumber: 3.5 Consensus size: 31
81517563 TTGCATTCAC
*
81517573 ATTCTGATTTTTTATTCTGTTACCTAATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTAATACTG
*
81517605 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTAATACTG
* * * *
81517636 ATTCTGATTTTAATTTTGTCACCTAATTCTG
1 ATTCTGATTTTGATTCTGTTACCTAATACTG
*
81517667 ATTCTGATTCTGATTCT
1 ATTCTGATTTTGATTCT
81517684 AGTTCTGATA
Statistics
Matches: 69, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
31 62 0.90
32 7 0.10
ACGTcount: A:0.21, C:0.16, G:0.12, T:0.51
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTAATACTG
Found at i:81519700 original size:27 final size:27
Alignment explanation
Indices: 81519670--81519944 Score: 342
Period size: 27 Copynumber: 10.2 Consensus size: 27
81519660 TGGTTTGTAA
*
81519670 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
81519697 AATTACCGAAATACCCCTGTAGGATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
81519724 AATTA-TCGCAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* * *
81519751 AATTATTGCAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
81519778 AATTA-TCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
*
81519805 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
81519832 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
** * *
81519859 AATTA-TCGCTATACCCTTATAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
81519886 AATTAAC-GAAATACCCCTGTAGGGTAG
1 AATT-ACTGAAATACCCCTGTAGGGTAG
* *
81519913 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACTGAAATACCCCTGTAGGGTAG
81519940 AATTA
1 AATTA
81519945 TCGAGATTCC
Statistics
Matches: 219, Mismatches: 21, Indels: 16
0.86 0.08 0.06
Matches are distributed among these distances:
26 3 0.01
27 214 0.98
28 2 0.01
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:81519778 original size:81 final size:81
Alignment explanation
Indices: 81519670--81519948 Score: 405
Period size: 81 Copynumber: 3.4 Consensus size: 81
81519660 TGGTTTGTAA
* * * * * *
81519670 AATTACTAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGATAGAATTATCGCAA
1 AATTACTGAAATACCCCTATAGGGTAGAATTATCGAAATACCCCTGTAGGGTAGAATTAACGAAA
81519735 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* * *
81519751 AATTATTGCAATACCCCTATAGGGTAGAATTATCGAAATACCCCTGTAGGGTAGAATTACCGAAA
1 AATTACTGAAATACCCCTATAGGGTAGAATTATCGAAATACCCCTGTAGGGTAGAATTAACGAAA
81519816 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* ** * *
81519832 AATTACCGAAATACCCCTATAGGGTAGAATTATCGCTATACCCTTATAGGGTAGAATTAACGAAA
1 AATTACTGAAATACCCCTATAGGGTAGAATTATCGAAATACCCCTGTAGGGTAGAATTAACGAAA
81519897 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* * *
81519913 AATTACTAAAATACCCCTGTAGGGTGGAATTATCGA
1 AATTACTGAAATACCCCTATAGGGTAGAATTATCGA
81519949 GATTCCTTGT
Statistics
Matches: 177, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 177 1.00
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (81 bp):
AATTACTGAAATACCCCTATAGGGTAGAATTATCGAAATACCCCTGTAGGGTAGAATTAACGAAA
TACCCCTGTAGGGTAG
Found at i:81519936 original size:54 final size:54
Alignment explanation
Indices: 81519678--81519948 Score: 382
Period size: 54 Copynumber: 5.0 Consensus size: 54
81519668 AAAATTACTA
* *
81519678 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGATAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTATCG
* * * *
81519732 CAATACCCCTGTAGGGTAGAATTATTGCAATACCCCTATAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTATCG
* *
81519786 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTATCG
* ** * * *
81519840 AAATACCCCTATAGGGTAGAATTA-TCGCTATACCCTTATAGGGTAGAATTAACG
1 AAATACCCCTGTAGGGTAGAATTACT-GAAATACCCCTGTAGGGTAGAATTATCG
* *
81519894 AAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTGGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTATCG
81519948 A
1 A
81519949 GATTCCTTGT
Statistics
Matches: 188, Mismatches: 27, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
54 187 0.99
55 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (54 bp):
AAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTATCG
Found at i:81520451 original size:22 final size:22
Alignment explanation
Indices: 81520399--81520463 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
81520389 TTAAAGCCTT
* *
81520399 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
81520421 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
81520443 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
81520464 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:81520652 original size:27 final size:27
Alignment explanation
Indices: 81520622--81520723 Score: 116
Period size: 27 Copynumber: 3.8 Consensus size: 27
81520612 ATTCTGTTAA
* *
81520622 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
81520649 GTGGCTATGCCACAAATACCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
* *
81520676 GTAGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
81520703 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
81520724 ATAACTGAGC
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
26 7 0.11
27 50 0.79
28 6 0.10
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.35
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:81520803 original size:38 final size:38
Alignment explanation
Indices: 81520752--81520841 Score: 162
Period size: 38 Copynumber: 2.4 Consensus size: 38
81520742 TGCAACTGTT
*
81520752 GAGTGTAGGGCTGGGTGGGTTGAGCTATTCCCCACATG
1 GAGTGTAGGGCTGGGTGGGTGGAGCTATTCCCCACATG
*
81520790 GAGTGTAGGGCTGGGTGGGTGGATCTATTCCCCACATG
1 GAGTGTAGGGCTGGGTGGGTGGAGCTATTCCCCACATG
81520828 GAGTGTAGGGCTGG
1 GAGTGTAGGGCTGG
81520842 TACGGGTGGA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 50 1.00
ACGTcount: A:0.16, C:0.17, G:0.42, T:0.26
Consensus pattern (38 bp):
GAGTGTAGGGCTGGGTGGGTGGAGCTATTCCCCACATG
Found at i:81520936 original size:6 final size:6
Alignment explanation
Indices: 81520898--81521005 Score: 62
Period size: 6 Copynumber: 17.3 Consensus size: 6
81520888 TTGCATTCAC
* * *
81520898 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCT-
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
81520947 CTTACTTG ATACTG ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCT-
1 ATT-C-TG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
81520997 AGTTCTG AT
1 A-TTCTG AT
81521006 AATGTTTCTT
Statistics
Matches: 78, Mismatches: 12, Indels: 24
0.68 0.11 0.21
Matches are distributed among these distances:
5 6 0.08
6 55 0.71
7 14 0.18
8 3 0.04
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:81520944 original size:31 final size:31
Alignment explanation
Indices: 81520898--81520996 Score: 144
Period size: 31 Copynumber: 3.2 Consensus size: 31
81520888 TTGCATTCAC
81520898 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
* *
81520930 ATTCTGATTTTGATTCTCTTACTTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* * *
81520961 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
81520992 ATTCT
1 ATTCT
81520997 AGTTCTGATA
Statistics
Matches: 60, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
31 53 0.88
32 7 0.12
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:81522226 original size:28 final size:28
Alignment explanation
Indices: 81522186--81522243 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
81522176 ATGATAAAAG
81522186 AAAATATCATCTTATTATTGTCATCTTC
1 AAAATATCATCTTATTATTGTCATCTTC
*
81522214 AAAATATCATCTTATTATTGTCATTTTC
1 AAAATATCATCTTATTATTGTCATCTTC
81522242 AA
1 AA
81522244 CCTAAAATTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.34, C:0.16, G:0.03, T:0.47
Consensus pattern (28 bp):
AAAATATCATCTTATTATTGTCATCTTC
Found at i:81534015 original size:13 final size:14
Alignment explanation
Indices: 81533992--81534020 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
81533982 AGATAGTTTT
81533992 TTCTACAATTTTAA
1 TTCTACAATTTTAA
81534006 TTCT-CAATTTTAA
1 TTCTACAATTTTAA
81534019 TT
1 TT
81534021 ATCGTACTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.31, C:0.14, G:0.00, T:0.55
Consensus pattern (14 bp):
TTCTACAATTTTAA
Found at i:81543274 original size:40 final size:40
Alignment explanation
Indices: 81543230--81543376 Score: 208
Period size: 40 Copynumber: 3.7 Consensus size: 40
81543220 CGATATATTA
*
81543230 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
1 TATATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
*
81543270 TATATCCAGGTTAAATCCCACAGGCTTCGTGCTGGTAATG
1 TATATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
* *
81543310 TATATCCAGGTTAAATCCCGCAGGCTTAGTGCTGGT-A-C
1 TATATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
* *
81543348 TATATCCGGGCTTAAAGTTCCGCAGGCTT
1 TATATCCAGG-TTAAA-TCCCGCAGGCTT
81543377 TGAGCTAGTA
Statistics
Matches: 98, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
38 9 0.09
39 6 0.06
40 83 0.85
ACGTcount: A:0.22, C:0.23, G:0.24, T:0.30
Consensus pattern (40 bp):
TATATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
Found at i:81551273 original size:40 final size:40
Alignment explanation
Indices: 81551229--81551362 Score: 191
Period size: 40 Copynumber: 3.4 Consensus size: 40
81551219 CGATATATTA
* *
81551229 TATATCTGGGTTAAATCCCACAGGCTTCGTGCTGGTAACG
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAACG
*
81551269 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAACG
* * *
81551309 TATATCCGGGTCAAATCCCGTAGGCTTAGTGCTGGT-AC-
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAACG
81551347 TATATCCGGGCTTAAA
1 TATATCCGGG-TTAAA
81551363 GTTCTGCAGG
Statistics
Matches: 85, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
38 10 0.12
39 5 0.06
40 70 0.82
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.30
Consensus pattern (40 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAACG
Found at i:81551387 original size:80 final size:80
Alignment explanation
Indices: 81551229--81551387 Score: 196
Period size: 80 Copynumber: 2.0 Consensus size: 80
81551219 CGATATATTA
* * *
81551229 TATATCTGGGTTAAATCCCACAGGCTTCGTGCTGGTAACGTATATCCGGGTTAAATCCCGCAGGC
1 TATATCCGGGTCAAATCCCACAGGCTTAGTGCTGGTAACGTATATCCGGGTTAAATCCCGCAGGC
* *
81551294 TTCGTGCTGGTAATG
66 TTCGAGCTAGTAATG
** * *
81551309 TATATCCGGGTCAAATCCCGTAGGCTTAGTGCTGGT-AC-TATATCCGGGCTTAAAGTTCTGCAG
1 TATATCCGGGTCAAATCCCACAGGCTTAGTGCTGGTAACGTATATCCGGG-TTAAA-TCCCGCAG
*
81551372 GCTTTGAGCTAGTAAT
64 GCTTCGAGCTAGTAAT
81551388 TGGATTCGGG
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
78 10 0.15
79 7 0.10
80 50 0.75
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (80 bp):
TATATCCGGGTCAAATCCCACAGGCTTAGTGCTGGTAACGTATATCCGGGTTAAATCCCGCAGGC
TTCGAGCTAGTAATG
Found at i:81557382 original size:17 final size:17
Alignment explanation
Indices: 81557360--81557395 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
81557350 GGAAACAATA
81557360 TCTACCTTTGATTGAAT
1 TCTACCTTTGATTGAAT
81557377 TCTACCTTTGATTGAAT
1 TCTACCTTTGATTGAAT
81557394 TC
1 TC
81557396 ACTTATAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.22, C:0.19, G:0.11, T:0.47
Consensus pattern (17 bp):
TCTACCTTTGATTGAAT
Found at i:81559529 original size:43 final size:43
Alignment explanation
Indices: 81559421--81559530 Score: 134
Period size: 42 Copynumber: 2.6 Consensus size: 43
81559411 GATTTGAGAT
* *
81559421 TTACACGTAAGACCATGTCTGGGACACCGGCATCGTATCTGAA
1 TTACATGTAAGACCATGTCTGGGACACAGGCATCGTATCTGAA
* * * *
81559464 TT-CGTGTAAGACCTTGTCTGGGACAGAGGCATTG-ATACTGAA
1 TTACATGTAAGACCATGTCTGGGACACAGGCATCGTAT-CTGAA
*
81559506 TTACATGTAAGACCACGTCTGGGAC
1 TTACATGTAAGACCATGTCTGGGAC
81559531 GTCAGCATTG
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
41 2 0.04
42 33 0.59
43 21 0.38
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (43 bp):
TTACATGTAAGACCATGTCTGGGACACAGGCATCGTATCTGAA
Found at i:81561790 original size:77 final size:77
Alignment explanation
Indices: 81561662--81561812 Score: 275
Period size: 77 Copynumber: 2.0 Consensus size: 77
81561652 CACATAACTG
*
81561662 GTCCTATATCTTTCATGTCAATCTTGAATTTAACATGTCTTTGGTACATTTTACTATTTCATTGT
1 GTCCTATATCTTTCATGTCAATCTTGAATTTAACATGTCTTTGGTACATTTTACCATTTCATTGT
81561727 TACTTCCAAGAA
66 TACTTCCAAGAA
* *
81561739 GTCCTATATCTTTCATGTCAATCTTGAATTTCACATGTCTTTGGTATATTTTACCATTTCATTGT
1 GTCCTATATCTTTCATGTCAATCTTGAATTTAACATGTCTTTGGTACATTTTACCATTTCATTGT
81561804 TACTTCCAA
66 TACTTCCAA
81561813 CAATGAGTAT
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
77 71 1.00
ACGTcount: A:0.25, C:0.19, G:0.10, T:0.46
Consensus pattern (77 bp):
GTCCTATATCTTTCATGTCAATCTTGAATTTAACATGTCTTTGGTACATTTTACCATTTCATTGT
TACTTCCAAGAA
Found at i:81568110 original size:29 final size:30
Alignment explanation
Indices: 81568053--81568112 Score: 72
Period size: 29 Copynumber: 2.0 Consensus size: 30
81568043 TTATATAATT
81568053 AATTATCATCTTTTATTTTTTTCACTTTCC
1 AATTATCATCTTTTATTTTTTTCACTTTCC
*
81568083 AATT-TCATCCTTTT-TTTATTTT-ATTTTCC
1 AATTATCAT-CTTTTATTT-TTTTCACTTTCC
81568112 A
1 A
81568113 TGTATGAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
29 14 0.52
30 13 0.48
ACGTcount: A:0.20, C:0.18, G:0.00, T:0.62
Consensus pattern (30 bp):
AATTATCATCTTTTATTTTTTTCACTTTCC
Found at i:81574256 original size:42 final size:42
Alignment explanation
Indices: 81574142--81574296 Score: 213
Period size: 42 Copynumber: 3.7 Consensus size: 42
81574132 TACCGTACCA
*
81574142 ATGCCATATCCCAGATATGGTCTTACATGTAA-TCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACG-AAGTCTCATATCG
* * * *
81574184 ATGCCAATAGCGCAGCTATGGTCTTACACGAAGTCTCATATTG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
*
81574227 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATGTCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
* *
81574269 ATTCCATATCCCATATATGGTCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
81574297 ATAACCTTAT
Statistics
Matches: 99, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
42 65 0.66
43 34 0.34
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
Found at i:81574767 original size:42 final size:44
Alignment explanation
Indices: 81574650--81574770 Score: 124
Period size: 43 Copynumber: 2.8 Consensus size: 44
81574640 ATACCAATGC
* * * *
81574650 CATATCCAAGATATGGTCTTATATGTAATCT-TGTATCGATGTG
1 CATATCCCAGATATGGTCTTACACGTAATCTCAGTATCGATGTG
* * * *
81574693 AATAGCCCAGCTATGGTCTTACACG-ATGTCTCAG-ATCGATGT-
1 CATATCCCAGATATGGTCTTACACGTA-ATCTCAGTATCGATGTG
*
81574735 CATATCCCAGATGTGGTCTTACACGTAATCTCAGTA
1 CATATCCCAGATATGGTCTTACACGTAATCTCAGTA
81574771 ACCCTAATGT
Statistics
Matches: 61, Mismatches: 13, Indels: 8
0.74 0.16 0.10
Matches are distributed among these distances:
42 28 0.46
43 32 0.52
44 1 0.02
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (44 bp):
CATATCCCAGATATGGTCTTACACGTAATCTCAGTATCGATGTG
Found at i:81578761 original size:26 final size:26
Alignment explanation
Indices: 81578732--81578783 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
81578722 GCCAGTATAG
* *
81578732 GACCATGTTTGGGACATGGCATCGAC
1 GACCATGTCTGGGACATGACATCGAC
81578758 GACCATGTCTGGGACATGACATCGAC
1 GACCATGTCTGGGACATGACATCGAC
81578784 ATTGAAATGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.29, T:0.21
Consensus pattern (26 bp):
GACCATGTCTGGGACATGACATCGAC
Found at i:81585988 original size:42 final size:42
Alignment explanation
Indices: 81585876--81585995 Score: 161
Period size: 43 Copynumber: 2.8 Consensus size: 42
81585866 TACCGTACCA
* *
81585876 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
* **
81585918 ATGCCAATAGCCCAGCCATGGTCTTACACG-AAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGTAA-TCTCATATCG
*
81585961 ATGCCATATCCCAAATATGGTCTTACACGTAATCT
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCT
81585996 TAATAACCCT
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
42 30 0.45
43 36 0.55
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
Found at i:81592742 original size:93 final size:93
Alignment explanation
Indices: 81592635--81592805 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
81592625 GCCCCTAAGT
* *
81592635 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
81592700 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
81592728 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
81592793 CGAGTTCGGATGC
66 CGAGTTCGGATGC
81592806 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:81592802 original size:46 final size:46
Alignment explanation
Indices: 81592630--81592802 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
81592620 AACCCGCCCC
* * *
81592630 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
81592676 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
81592724 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
81592769 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
81592803 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:81595226 original size:15 final size:15
Alignment explanation
Indices: 81595200--81595255 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
81595190 CAAGGAAACC
81595200 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
81595215 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
81595230 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
81595245 GAATAAAGAAA
1 GAATAAAGAAA
81595256 CCCAAGATAC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
14 1 0.03
15 35 0.95
16 1 0.03
ACGTcount: A:0.61, C:0.11, G:0.16, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:81598303 original size:46 final size:46
Alignment explanation
Indices: 81598221--81598339 Score: 184
Period size: 46 Copynumber: 2.6 Consensus size: 46
81598211 CGCCCCTAAG
* * * * *
81598221 TGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAC
1 TGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAC
*
81598267 TGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAC
81598313 TGAACTCGGACTCAACTCAACGAGTTC
1 TGAACTCGGACTCAACTCAACGAGTTC
81598340 GGATGCTCAA
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 67 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAC
Found at i:81598361 original size:46 final size:45
Alignment explanation
Indices: 81598219--81598361 Score: 119
Period size: 46 Copynumber: 3.1 Consensus size: 45
81598209 CCCGCCCCTA
* * ** * *
81598219 AGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTC-GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T
* * *** *
81598264 AACTGAACTCGGACTCAACTCAACGAGTTCAGACATTC-GCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T
81598310 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCT
81598357 AGTGA
1 AGTGA
81598362 CATGTCACTT
Statistics
Matches: 83, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
46 77 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCT
Found at i:81601668 original size:25 final size:25
Alignment explanation
Indices: 81601599--81601727 Score: 125
Period size: 25 Copynumber: 5.2 Consensus size: 25
81601589 TGCCACTGAA
* * *
81601599 GCTTTATATAATATTCACCAGAAAG
1 GCTTTACAGAATATTCACCACAAAG
* * * *
81601624 GCTTTATAAGGA-GTTCACCACAAAT
1 GCTTTA-CAGAATATTCACCACAAAG
* * *
81601649 GCTTTACAGAATATTTACCATAATG
1 GCTTTACAGAATATTCACCACAAAG
* *
81601674 GCTTTACAGAGTATTCGCCACAAAG
1 GCTTTACAGAATATTCACCACAAAG
*
81601699 GCTTTATAGAATATTCACCACAAAG
1 GCTTTACAGAATATTCACCACAAAG
81601724 GCTT
1 GCTT
81601728 GGTTTGCTTT
Statistics
Matches: 81, Mismatches: 21, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
24 3 0.04
25 76 0.94
26 2 0.02
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.30
Consensus pattern (25 bp):
GCTTTACAGAATATTCACCACAAAG
Found at i:81601677 original size:50 final size:50
Alignment explanation
Indices: 81601599--81601727 Score: 152
Period size: 50 Copynumber: 2.6 Consensus size: 50
81601589 TGCCACTGAA
* * * *
81601599 GCTTTATATAATATTCACCAGAAAGGCTTTATA-AGGAGTTCACCACAAAT
1 GCTTTATAGAATATTCACCACAAAGGCTTTACAGAGGA-TTCACCACAAAG
* * * * * *
81601649 GCTTTACAGAATATTTACCATAATGGCTTTACAGAGTATTCGCCACAAAG
1 GCTTTATAGAATATTCACCACAAAGGCTTTACAGAGGATTCACCACAAAG
81601699 GCTTTATAGAATATTCACCACAAAGGCTT
1 GCTTTATAGAATATTCACCACAAAGGCTT
81601728 GGTTTGCTTT
Statistics
Matches: 65, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
50 62 0.95
51 3 0.05
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.30
Consensus pattern (50 bp):
GCTTTATAGAATATTCACCACAAAGGCTTTACAGAGGATTCACCACAAAG
Found at i:81604145 original size:40 final size:40
Alignment explanation
Indices: 81604092--81604364 Score: 420
Period size: 40 Copynumber: 6.8 Consensus size: 40
81604082 CAGCCGCAAA
* * * *
81604092 CATATTTGCCTTCGGGTCTTAACCCGGACATATGAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
* *
81604132 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCATCCCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
*
81604172 CATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
*
81604212 CATAATTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
* * *
81604252 CATAATTGCCTTCGGGTCATAACCCGGATATATCATCTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
*
81604292 CATAATTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
* *
81604332 CATAATTGCCTTCGGGTCATAACCCGGATATAT
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATAT
81604365 TCCAATGTTC
Statistics
Matches: 211, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 211 1.00
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (40 bp):
CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
Found at i:81604198 original size:80 final size:80
Alignment explanation
Indices: 81604092--81604364 Score: 465
Period size: 80 Copynumber: 3.4 Consensus size: 80
81604082 CAGCCGCAAA
* * * *
81604092 CATATTTGCCTTCGGGTCTTAACCCGGACATATGAACTCGCATAATTGCCTTCGGGTCTTAGCCC
1 CATAATTGCCTTCGGGTCATAACCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCC
* * *
81604157 GGATATATCATCCCG
66 GGATATGTCAACTCG
*
81604172 CATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCC
1 CATAATTGCCTTCGGGTCATAACCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCC
81604237 GGATATGTCAACTCG
66 GGATATGTCAACTCG
*
81604252 CATAATTGCCTTCGGGTCATAACCCGGATATATCATCTCGCATAATTGCCTTCGGGTCTTAGCCC
1 CATAATTGCCTTCGGGTCATAACCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCC
81604317 GGATATGTCAACTCG
66 GGATATGTCAACTCG
81604332 CATAATTGCCTTCGGGTCATAACCCGGATATAT
1 CATAATTGCCTTCGGGTCATAACCCGGATATAT
81604365 TCCAATGTTC
Statistics
Matches: 183, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 183 1.00
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (80 bp):
CATAATTGCCTTCGGGTCATAACCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCC
GGATATGTCAACTCG
Found at i:81613149 original size:39 final size:40
Alignment explanation
Indices: 81612950--81613220 Score: 411
Period size: 40 Copynumber: 6.8 Consensus size: 40
81612940 CAGCCGCAAA
* * * *
81612950 CATATTTGCCTTCGGGTCTTAACCCGGACATATGAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
* *
81612990 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCATCCCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
* *
81613030 CATAATTGCCTTCGGATCATAGCCCGGATATATCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
*
81613070 CATAATTGCCTTCGGGTCTTAGCCCGGATATGTCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
* *
81613110 CATAATTGCCTTCGGGTCATA-CCCGGATATATCATCTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
81613149 CATAATTGCCTTCGGGTCTTAGCCCGGATAT-TCAACTCG
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
* *
81613188 CATAATTGCCTTCGGGTCATAACCCGGATATAT
1 CATAATTGCCTTCGGGTCTTAGCCCGGATATAT
81613221 TCCAATGTTC
Statistics
Matches: 209, Mismatches: 20, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
39 72 0.34
40 137 0.66
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.30
Consensus pattern (40 bp):
CATAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCG
Found at i:81616473 original size:28 final size:30
Alignment explanation
Indices: 81616418--81616475 Score: 86
Period size: 28 Copynumber: 2.0 Consensus size: 30
81616408 TCTTTTTTTC
81616418 CACTTAATTTGTTTTCATTTATAAATTATA
1 CACTTAATTTGTTTTCATTTATAAATTATA
81616448 CACTATAATTTG-TTT-A-TTATAAATTATA
1 CACT-TAATTTGTTTTCATTTATAAATTATA
81616476 AAATTGTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
28 12 0.44
29 1 0.04
30 7 0.26
31 7 0.26
ACGTcount: A:0.36, C:0.09, G:0.03, T:0.52
Consensus pattern (30 bp):
CACTTAATTTGTTTTCATTTATAAATTATA
Found at i:81626044 original size:30 final size:30
Alignment explanation
Indices: 81625998--81626058 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
81625988 TTCTCGAGCC
* *
81625998 TAGGGGTAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
81626028 TAGGGGCAAAAATGTAATTTTGCTAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
81626058 T
1 T
81626059 GTATTAAATG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.05, G:0.25, T:0.33
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:81633598 original size:30 final size:29
Alignment explanation
Indices: 81633552--81633610 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
81633542 TTCCCGGGCC
*
81633552 TAGGGGAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAATGTAATTATGCAAAAGTT
* *
81633581 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGG-AAAAATGTAATTATGCAAAAGTT
81633611 CGTATTAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.29
Consensus pattern (29 bp):
TAGGGGAAAAATGTAATTATGCAAAAGTT
Found at i:81636342 original size:25 final size:25
Alignment explanation
Indices: 81636314--81636458 Score: 69
Period size: 25 Copynumber: 5.8 Consensus size: 25
81636304 GCTTTGCAGG
81636314 TAACTCGCCACAAAGGCTTCCCAGA
1 TAACTCGCCACAAAGGCTTCCCAGA
** * * * *
81636339 TAACCTAACTACTAAGTCTTCCCAAA
1 TAA-CTCGCCACAAAGGCTTCCCAGA
* * * ***
81636365 CAA-TACACCACATAGGCTTTTAAGA
1 TAACT-CGCCACAAAGGCTTCCCAGA
* * *
81636390 TAATTCGCCATAAAGGCTTCCTAGA
1 TAACTCGCCACAAAGGCTTCCCAGA
* * **
81636415 TAACCTAGCCACAAAAGCTT-ATAGA
1 TAA-CTCGCCACAAAGGCTTCCCAGA
*
81636440 TAACTTGCCACAAAGGCTT
1 TAACTCGCCACAAAGGCTT
81636459 GGATTAGCAT
Statistics
Matches: 86, Mismatches: 30, Indels: 9
0.69 0.24 0.07
Matches are distributed among these distances:
24 15 0.17
25 40 0.47
26 31 0.36
ACGTcount: A:0.37, C:0.28, G:0.12, T:0.23
Consensus pattern (25 bp):
TAACTCGCCACAAAGGCTTCCCAGA
Found at i:81636434 original size:26 final size:24
Alignment explanation
Indices: 81636372--81636458 Score: 75
Period size: 25 Copynumber: 3.5 Consensus size: 24
81636362 AAACAATACA
* * * *
81636372 CCACATAGGCTTTTAAGATAATTCG
1 CCACAAAGGCTTAT-AGATAACTAG
* *
81636397 CCATAAAGGCTTCCTAGATAACCTAG
1 CCACAAAGGCTT-ATAGATAA-CTAG
* *
81636423 CCACAAAAGCTTATAGATAACTTG
1 CCACAAAGGCTTATAGATAACTAG
81636447 CCACAAAGGCTT
1 CCACAAAGGCTT
81636459 GGATTAGCAT
Statistics
Matches: 50, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
24 14 0.28
25 23 0.46
26 13 0.26
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.25
Consensus pattern (24 bp):
CCACAAAGGCTTATAGATAACTAG
Found at i:81636451 original size:24 final size:25
Alignment explanation
Indices: 81636411--81636458 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
81636401 AAAGGCTTCC
81636411 TAGATAACCTAGCCACAAAAGCTTA
1 TAGATAACCTAGCCACAAAAGCTTA
* *
81636436 TAGATAA-CTTGCCACAAAGGCTT
1 TAGATAACCTAGCCACAAAAGCTT
81636459 GGATTAGCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.40, C:0.23, G:0.15, T:0.23
Consensus pattern (25 bp):
TAGATAACCTAGCCACAAAAGCTTA
Found at i:81643015 original size:39 final size:39
Alignment explanation
Indices: 81642898--81643159 Score: 320
Period size: 39 Copynumber: 6.6 Consensus size: 39
81642888 GCTCCTCGTT
* *
81642898 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
81642938 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
81642978 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
*
81643017 CAAATGCCTTCGGGCTTAGCCCGGAGTTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
81643056 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * *
81643095 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TCGCA
81643136 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
81643160 CATCATTCAA
Statistics
Matches: 202, Mismatches: 13, Indels: 15
0.88 0.06 0.07
Matches are distributed among these distances:
39 130 0.64
40 61 0.30
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:81651001 original size:39 final size:39
Alignment explanation
Indices: 81650887--81651149 Score: 343
Period size: 39 Copynumber: 6.6 Consensus size: 39
81650877 GCTCCTCGTT
* * *
81650887 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCA
* *
81650927 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
81650967 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
*
81651006 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
*
81651045 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
* * * *
81651084 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGTAAC-TCGCA
81651125 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
81651150 CATCATTCAA
Statistics
Matches: 205, Mismatches: 13, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
39 113 0.55
40 79 0.39
41 13 0.06
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
Found at i:81652246 original size:13 final size:13
Alignment explanation
Indices: 81652228--81652252 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81652218 AGGATGAGCA
81652228 TTTTTTTTCTTTG
1 TTTTTTTTCTTTG
81652241 TTTTTTTTCTTT
1 TTTTTTTTCTTT
81652253 CTAGTTTCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.04, T:0.88
Consensus pattern (13 bp):
TTTTTTTTCTTTG
Found at i:81654496 original size:12 final size:12
Alignment explanation
Indices: 81654475--81654550 Score: 104
Period size: 12 Copynumber: 6.4 Consensus size: 12
81654465 AAACAAAGAC
81654475 AACTTAGAAATA
1 AACTTAGAAATA
81654487 AAC-TAGGAAATA
1 AACTTA-GAAATA
81654499 AACTTAGAAATA
1 AACTTAGAAATA
81654511 AACTTAGAAAT-
1 AACTTAGAAATA
*
81654522 AA-TAATGAAATA
1 AACTTA-GAAATA
81654534 AACTTAGAAATA
1 AACTTAGAAATA
81654546 AACTT
1 AACTT
81654551 CTATCGACAA
Statistics
Matches: 57, Mismatches: 2, Indels: 10
0.83 0.03 0.14
Matches are distributed among these distances:
10 2 0.04
11 9 0.16
12 42 0.74
13 4 0.07
ACGTcount: A:0.58, C:0.08, G:0.09, T:0.25
Consensus pattern (12 bp):
AACTTAGAAATA
Found at i:81655906 original size:13 final size:13
Alignment explanation
Indices: 81655888--81655920 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
81655878 GGTTCTTCTG
*
81655888 GAAGGCCTGTAAA
1 GAAGGCCTATAAA
81655901 GAAGGCCTATAAA
1 GAAGGCCTATAAA
81655914 GAAGGCC
1 GAAGGCC
81655921 AGATTTGAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.39, C:0.18, G:0.30, T:0.12
Consensus pattern (13 bp):
GAAGGCCTATAAA
Found at i:81663120 original size:46 final size:46
Alignment explanation
Indices: 81663062--81663234 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
81663052 TTGTTGAGCA
* *
81663062 TCCGAACCCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
81663108 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
81663155 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
81663201 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
81663235 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 59 0.56
47 29 0.28
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:81663218 original size:93 final size:93
Alignment explanation
Indices: 81663059--81663229 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
81663049 GGATTGTTGA
* *
81663059 GCATCCGAACCCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACCCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
81663124 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
81663152 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACCCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
*
81663217 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
81663230 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACCCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:81663496 original size:19 final size:20
Alignment explanation
Indices: 81663459--81663496 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
81663449 ATATGGTGGT
81663459 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
81663479 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
81663497 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:81664629 original size:39 final size:39
Alignment explanation
Indices: 81664566--81664658 Score: 141
Period size: 39 Copynumber: 2.4 Consensus size: 39
81664556 GACTTTAAGC
* * *
81664566 CCGGATATATTCCCAGCACATAGCCTGCGGACGTCAAGT
1 CCGGATATGTTTCCAGCACATAGCCTGCGGACCTCAAGT
* *
81664605 CCGGATATGTTTCCAGTACGTAGCCTGCGGACCTCAAGT
1 CCGGATATGTTTCCAGCACATAGCCTGCGGACCTCAAGT
81664644 CCGGATATGTTTCCA
1 CCGGATATGTTTCCA
81664659 AGTATCATGC
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 49 1.00
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATGTTTCCAGCACATAGCCTGCGGACCTCAAGT
Found at i:81672386 original size:39 final size:38
Alignment explanation
Indices: 81672305--81672415 Score: 141
Period size: 39 Copynumber: 2.9 Consensus size: 38
81672295 TCTAGCACAA
* * * *
81672305 AGCCTGCGAGACTTTAAGCCCGAATATATTTCCAGCACT
1 AGCCTGCG-GACCTCAAGCCCGGATATGTTTCCAGCACT
** *
81672344 AGCCTGCGGACCTCAAGTTCGGATATGTTTCCAGTACGT
1 AGCCTGCGGACCTCAAGCCCGGATATGTTTCCAGCAC-T
81672383 AGCCTGCGGACCTCAAGCCCGGATATGTTTCCA
1 AGCCTGCGGACCTCAAGCCCGGATATGTTTCCA
81672416 AGTATCATGC
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
38 22 0.35
39 40 0.65
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.25
Consensus pattern (38 bp):
AGCCTGCGGACCTCAAGCCCGGATATGTTTCCAGCACT
Found at i:81680130 original size:39 final size:39
Alignment explanation
Indices: 81680077--81680166 Score: 135
Period size: 39 Copynumber: 2.3 Consensus size: 39
81680067 GACTTTAAGC
* * *
81680077 CCGGATATATTTCCAGCACATAGCCTGCGGACCTCATGT
1 CCGGATATGTTTCCAGCACATAGCCGGCGGACCTCAAGT
* *
81680116 CCGGATATGTTTCCAGTACGTAGCCGGCGGACCTCAAGT
1 CCGGATATGTTTCCAGCACATAGCCGGCGGACCTCAAGT
81680155 CCGGATATGTTT
1 CCGGATATGTTT
81680167 TCAAGTATCA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (39 bp):
CCGGATATGTTTCCAGCACATAGCCGGCGGACCTCAAGT
Found at i:81683344 original size:33 final size:33
Alignment explanation
Indices: 81683292--81683362 Score: 81
Period size: 33 Copynumber: 2.2 Consensus size: 33
81683282 TTGGGCCCAT
* * *
81683292 TCTGCTACTGTATAGGGCTAA-AGCCCAGACTGC
1 TCTGCTACTGAATAAGGCTAAGA-CCCAGACTGA
* *
81683325 TCTGTTACTGAATAAGGCTACGACCCAGACTGA
1 TCTGCTACTGAATAAGGCTAAGACCCAGACTGA
81683358 TCTGC
1 TCTGC
81683363 ATATTCTGAT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
33 30 0.97
34 1 0.03
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (33 bp):
TCTGCTACTGAATAAGGCTAAGACCCAGACTGA
Found at i:81689013 original size:45 final size:44
Alignment explanation
Indices: 81688845--81689000 Score: 173
Period size: 45 Copynumber: 3.6 Consensus size: 44
81688835 ATATTGTACA
* * *
81688845 ATGCCAACGTCCCAGACGTGGTCTTATATGTAATCAC-ATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACAATATCG
*
81688888 ATGCC-ACTGTCCCAGACA-GGGCTTACACG-AATCA-AATA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGTAATCACAATATCG
* * *
81688928 ATG-CAGATGTCCCAAACATGGTCTTACACGTAACCACATATATCG
1 ATGCCA-ACGTCCCAGACATGGTCTTACACGTAATCACA-ATATCG
81688973 ATGCCAACGTCCCAGACATGGTCTTACA
1 ATGCCAACGTCCCAGACATGGTCTTACA
81689001 TGAGCACACA
Statistics
Matches: 93, Mismatches: 10, Indels: 18
0.77 0.08 0.15
Matches are distributed among these distances:
39 1 0.01
40 14 0.15
41 19 0.20
42 14 0.15
43 15 0.16
44 3 0.03
45 25 0.27
46 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACAATATCG
Found at i:81696809 original size:12 final size:10
Alignment explanation
Indices: 81696771--81696820 Score: 55
Period size: 10 Copynumber: 4.8 Consensus size: 10
81696761 TGTAATTCTG
*
81696771 TCAAAAATAA
1 TCAAAATTAA
*
81696781 CCAAAATTAA
1 TCAAAATTAA
81696791 TCAAAATTAA
1 TCAAAATTAA
81696801 CTACAAAATTAA
1 -T-CAAAATTAA
*
81696813 TTAAAATT
1 TCAAAATT
81696821 CATAATTTTC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
10 23 0.68
11 2 0.06
12 9 0.26
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (10 bp):
TCAAAATTAA
Found at i:81697636 original size:26 final size:26
Alignment explanation
Indices: 81697607--81697659 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
81697597 TCTATGGATG
* * * *
81697607 AATATTTCTATATTAGGGATAGATAT
1 AATATATCTATATCAAGGATAAATAT
81697633 AATATATCTATATCAAGGATAAATAT
1 AATATATCTATATCAAGGATAAATAT
81697659 A
1 A
81697660 CTAAGTCGGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.45, C:0.06, G:0.11, T:0.38
Consensus pattern (26 bp):
AATATATCTATATCAAGGATAAATAT
Found at i:81709841 original size:32 final size:32
Alignment explanation
Indices: 81709805--81709866 Score: 106
Period size: 32 Copynumber: 1.9 Consensus size: 32
81709795 TAGGGTTCAG
*
81709805 TCTTCATTGTCCATTAATTGTCCCTTTCTTGA
1 TCTTCATTGTCCATCAATTGTCCCTTTCTTGA
*
81709837 TCTTCGTTGTCCATCAATTGTCCCTTTCTT
1 TCTTCATTGTCCATCAATTGTCCCTTTCTT
81709867 TCCATCTTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.13, C:0.27, G:0.10, T:0.50
Consensus pattern (32 bp):
TCTTCATTGTCCATCAATTGTCCCTTTCTTGA
Found at i:81718704 original size:17 final size:18
Alignment explanation
Indices: 81718684--81718726 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
81718674 TCATAAAATG
*
81718684 AATTATTTTATTGTAT-A
1 AATTATTATATTGTATGA
*
81718701 AATTAATATATTGTATGA
1 AATTATTATATTGTATGA
81718719 AATTATTA
1 AATTATTA
81718727 ATGTAGATCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 14 0.64
18 8 0.36
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (18 bp):
AATTATTATATTGTATGA
Found at i:81719131 original size:25 final size:25
Alignment explanation
Indices: 81719065--81719171 Score: 103
Period size: 25 Copynumber: 4.3 Consensus size: 25
81719055 CCACAACCCT
*
81719065 TATGAG-TTCACCGATTCTCAGCTCA
1 TATGAGCTT-ACCGATTCTCAGCTCG
*
81719090 TATGAGCTTATCGATTCTCAGCTCG
1 TATGAGCTTACCGATTCTCAGCTCG
* * *
81719115 TATGAGCTTACCAATTCACAGCTTG
1 TATGAGCTTACCGATTCTCAGCTCG
* *
81719140 TGA-GAGCATATCGATTCAT-AGCTCG
1 T-ATGAGCTTACCGATTC-TCAGCTCG
81719165 TATGAGC
1 TATGAGC
81719172 ATACATGTAC
Statistics
Matches: 67, Mismatches: 11, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
24 1 0.01
25 63 0.94
26 3 0.04
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (25 bp):
TATGAGCTTACCGATTCTCAGCTCG
Found at i:81721376 original size:47 final size:47
Alignment explanation
Indices: 81721307--81721569 Score: 391
Period size: 47 Copynumber: 5.6 Consensus size: 47
81721297 CCCTTCGGGA
* * * * * *
81721307 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81721354 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81721401 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTGGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
81721448 CTTATCACATATATATACACTTTCACATTCATCCCATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81721497 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
81721544 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
81721570 CACAATTATC
Statistics
Matches: 197, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
47 153 0.78
49 44 0.22
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:81721519 original size:96 final size:96
Alignment explanation
Indices: 81721307--81721569 Score: 399
Period size: 96 Copynumber: 2.8 Consensus size: 96
81721297 CCCTTCGGGA
* * * * * *
81721307 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
81721370 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
81721401 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTGGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* * *
81721466 ACTTTCACATTCATCCCATTGGCCATTCGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
81721497 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
81721562 A--TTCACAT
66 ACTTTCACAT
81721570 CACAATTATC
Statistics
Matches: 156, Mismatches: 11, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
94 56 0.36
96 100 0.64
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:81721605 original size:143 final size:141
Alignment explanation
Indices: 81721309--81721569 Score: 405
Period size: 143 Copynumber: 1.8 Consensus size: 141
81721299 CTTCGGGACT
* *
81721309 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCTTATCACATATATACACTT
1 TATCACATATATACACTTTCACATCCATCACATTGGCCACTCGGCCTTATCACATATATACACTT
* * *
81721374 TCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
66 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACATTCACATTCATCACATCAG
* *
81721439 CCATTGGGCCT
131 CCATTCGGCCA
* * *
81721450 TATCACATATATATACACTTTCACATTCATCCCATTGGCCATTCGGCCTTATCACATATATACAC
1 TATCAC--ATATATACACTTTCACATCCATCACATTGGCCACTCGGCCTTATCACATATATACAC
*
81721515 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTCACAT
64 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACATTCACAT
81721570 CACAATTATC
Statistics
Matches: 110, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
141 6 0.05
143 104 0.95
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (141 bp):
TATCACATATATACACTTTCACATCCATCACATTGGCCACTCGGCCTTATCACATATATACACTT
TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACATTCACATTCATCACATCAG
CCATTCGGCCA
Found at i:81727671 original size:57 final size:56
Alignment explanation
Indices: 81727599--81727727 Score: 168
Period size: 57 Copynumber: 2.3 Consensus size: 56
81727589 GGGTTTAGCC
81727599 TGGACTGGTAATCCTAATCAAGCTTTTTAAGCATACACTATATAAAAGAATTAAACA
1 TGGACTGGTAATCCTAATCAAGCTTTTTAAGCATACACTATAT-AAAGAATTAAACA
* * * * * * * * *
81727656 TGTACTGGTAATCCTAATTAAGCTTTTTGAGCATCCGCTATATAAAGGATTTAGCC
1 TGGACTGGTAATCCTAATCAAGCTTTTTAAGCATACACTATATAAAGAATTAAACA
81727712 TGGACTGGTAATCCTA
1 TGGACTGGTAATCCTA
81727728 TCATATGACA
Statistics
Matches: 62, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
56 24 0.39
57 38 0.61
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Consensus pattern (56 bp):
TGGACTGGTAATCCTAATCAAGCTTTTTAAGCATACACTATATAAAGAATTAAACA
Found at i:81731712 original size:46 final size:46
Alignment explanation
Indices: 81731662--81731837 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
81731652 TGATTGAGCA
81731662 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
81731708 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
81731753 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
81731801 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81731838 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:81731818 original size:93 final size:93
Alignment explanation
Indices: 81731659--81731830 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
81731649 GGATGATTGA
*
81731659 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
81731724 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
81731752 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
81731816 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
81731831 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:81739283 original size:46 final size:46
Alignment explanation
Indices: 81739233--81739408 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
81739223 TGGTTGAGCA
81739233 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
81739279 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
81739324 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
81739372 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81739409 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:81739389 original size:93 final size:93
Alignment explanation
Indices: 81739230--81739401 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
81739220 GGATGGTTGA
* *
81739230 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81739295 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
81739323 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81739388 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
81739402 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:81743063 original size:53 final size:53
Alignment explanation
Indices: 81742882--81743089 Score: 186
Period size: 53 Copynumber: 3.9 Consensus size: 53
81742872 ATTAGGGTTT
* * * *
81742882 AAGGATACCACGTAA-ACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * * *
81742935 AAGGA-AGTCATGTAAGACCATGTCAAGACATGGCATTGATAAACTATGATAAGGC
1 AAGGATA-CCACGTAAGACCATGCCAAGACATGGCAATGGT-AAGT-TCATAAGGC
** * * * * * *
81742990 AAAAATCCCATGTAAAACCATGCCAAGGCATGGTAATGGTGAGTTCATAAGGC
1 AAGGATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
*
81743043 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCA
1 AAGGATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCA
81743090 AAAAGGAAAG
Statistics
Matches: 120, Mismatches: 30, Indels: 10
0.75 0.19 0.06
Matches are distributed among these distances:
52 1 0.01
53 57 0.47
54 24 0.20
55 38 0.32
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.21
Consensus pattern (53 bp):
AAGGATACCACGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:81744647 original size:33 final size:33
Alignment explanation
Indices: 81744610--81744673 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
81744600 CTGTCCTGAC
*
81744610 AGACTTTCTCTG-TTCTTTCTTTACTATCCCAAT
1 AGACTTTCTCTGTTTC-GTCTTTACTATCCCAAT
*
81744643 AGACTTTCTCTGTTTCGTGTTTACTATCCCA
1 AGACTTTCTCTGTTTCGTCTTTACTATCCCA
81744674 GCGAACTATC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 25 0.89
34 3 0.11
ACGTcount: A:0.17, C:0.27, G:0.09, T:0.47
Consensus pattern (33 bp):
AGACTTTCTCTGTTTCGTCTTTACTATCCCAAT
Found at i:81767620 original size:40 final size:40
Alignment explanation
Indices: 81767572--81767777 Score: 308
Period size: 40 Copynumber: 5.2 Consensus size: 40
81767562 AGACTAAGAT
* *
81767572 CCGAAGGCATTTGTGCTAGTGATTATATCCGAGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
81767612 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
81767652 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
81767692 CCGAAGGTATTTGTGCTAGTGACTATGTCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * * *
81767732 CCGAAGGCATTCGTGCGAGTTG-CTATATCC-GGCTAAATT
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
81767771 CCGAAGG
1 CCGAAGG
81767778 TACATGGGTT
Statistics
Matches: 155, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 14 0.09
40 139 0.90
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:81775351 original size:40 final size:40
Alignment explanation
Indices: 81775266--81775470 Score: 308
Period size: 40 Copynumber: 5.2 Consensus size: 40
81775256 GGACTAAGAT
*
81775266 CCGAAGGCATTTGTGCTAGTGATTATAT-CGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * *
81775305 CCGAAGGAATTTGTGCTAGTGATTATATCCAGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
81775345 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
81775385 CCGAAGGCATTTGTGCTAGTGACTATGTCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * *
81775425 CCGAAGGCATTTGTGCAAGTTG-CTATATCC-GGCTAAATT
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
81775464 CCGAAGG
1 CCGAAGG
81775471 TACTTGGGTT
Statistics
Matches: 154, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 41 0.27
40 111 0.72
41 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:81778504 original size:27 final size:27
Alignment explanation
Indices: 81778375--81778494 Score: 161
Period size: 27 Copynumber: 4.4 Consensus size: 27
81778365 TACCCTTATG
* *
81778375 GGGTAAAATAACCGTAATGCCCCCGTA
1 GGGTAAAATGACCGTAATGCCCCTGTA
*
81778402 GGGTAAAATAACCGTAATGCCCCCT-TA
1 GGGTAAAATGACCGTAATG-CCCCTGTA
* **
81778429 AGGTAAAATGATTGTAATGCCCCTGTA
1 GGGTAAAATGACCGTAATGCCCCTGTA
*
81778456 GGATAAAATGACCGTAATGCCCCTGTA
1 GGGTAAAATGACCGTAATGCCCCTGTA
81778483 GGGTAAAATGAC
1 GGGTAAAATGAC
81778495 GAGTATGCCC
Statistics
Matches: 81, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
26 5 0.06
27 72 0.89
28 4 0.05
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.23
Consensus pattern (27 bp):
GGGTAAAATGACCGTAATGCCCCTGTA
Found at i:81778714 original size:27 final size:27
Alignment explanation
Indices: 81778638--81778728 Score: 76
Period size: 27 Copynumber: 3.4 Consensus size: 27
81778628 AGTATTGTAT
* * *
81778638 TGGTGACTATATCACATTCACTAATAC
1 TGGTGGCTATACCACATTCACTGATAC
* * *
81778665 TTGTGGCTATGCCATAATT-ACTGATAC
1 TGGTGGCTATACCA-CATTCACTGATAC
* * *
81778692 TGGTGGCTTTACCACATTCACTGTTTC
1 TGGTGGCTATACCACATTCACTGATAC
*
81778719 TGGTAGCTAT
1 TGGTGGCTAT
81778729 GTTGCATTAT
Statistics
Matches: 48, Mismatches: 14, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
26 3 0.06
27 42 0.88
28 3 0.06
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (27 bp):
TGGTGGCTATACCACATTCACTGATAC
Found at i:81782363 original size:27 final size:27
Alignment explanation
Indices: 81782268--81782432 Score: 122
Period size: 27 Copynumber: 6.1 Consensus size: 27
81782258 GTTTACCAAC
* * *
81782268 TTACTGAAATACCC-CCAGTTGTAAAA
1 TTACCGAAATACCCTCGACTTGTAAAA
* ** *
81782294 TTACC-AAAGTACCATCGGTTTATAAAA
1 TTACCGAAA-TACCCTCGACTTGTAAAA
* * *
81782321 TTACCCAGATATCCTCGACTTGTAAAA
1 TTACCGAAATACCCTCGACTTGTAAAA
* *
81782348 TTACCGAAATACCCTC-AGTTTGCAAAA
1 TTACCGAAATACCCTCGA-CTTGTAAAA
* *
81782375 TTACTGAAATACCCTCGACATGTAAAA
1 TTACCGAAATACCCTCGACTTGTAAAA
* * *
81782402 TTATC-AAAGTACCCTCGAATTATAAAA
1 TTACCGAAA-TACCCTCGACTTGTAAAA
81782429 TTAC
1 TTAC
81782433 TGTTTTACCC
Statistics
Matches: 106, Mismatches: 27, Indels: 11
0.74 0.19 0.08
Matches are distributed among these distances:
25 3 0.03
26 12 0.11
27 88 0.83
28 3 0.03
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.28
Consensus pattern (27 bp):
TTACCGAAATACCCTCGACTTGTAAAA
Found at i:81782433 original size:54 final size:54
Alignment explanation
Indices: 81782268--81782434 Score: 171
Period size: 54 Copynumber: 3.1 Consensus size: 54
81782258 GTTTACCAAC
* * * **
81782268 TTACTGAAATACCC-CCAGTTGTAAAATTACCAAAGTACCATCGGTTTATAAAA
1 TTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCGAATTATAAAA
** * * *
81782321 TTACCCAGATATCCTCGACTTGTAAAATTACCGAAA-TACCCTC-AGTT-TGCAAAA
1 TTACTGAAATACCCTCGACTTGTAAAATTACC-AAAGTACCCTCGAATTAT--AAAA
* *
81782375 TTACTGAAATACCCTCGACATGTAAAATTATCAAAGTACCCTCGAATTATAAAA
1 TTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCGAATTATAAAA
81782429 TTACTG
1 TTACTG
81782435 TTTTACCCTC
Statistics
Matches: 91, Mismatches: 16, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
52 1 0.01
53 15 0.16
54 68 0.75
55 6 0.07
56 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.29
Consensus pattern (54 bp):
TTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCGAATTATAAAA
Found at i:81782441 original size:27 final size:27
Alignment explanation
Indices: 81782411--81782875 Score: 529
Period size: 27 Copynumber: 17.2 Consensus size: 27
81782401 ATTATCAAAG
* * *
81782411 TACCCTCGAATTATAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
81782438 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
81782465 TACCCTCGATTTATAAAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACT-ATTT
**
81782492 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
*
81782519 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
81782546 TACCTTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
81782573 TACCCTCGATTTACAGAGTTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * * *
81782600 TAACCTCGATTGATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * * *
81782627 TACCATTGATTCACAAAATTATTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * **
81782654 TACCCTCTATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
*
81782681 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
**
81782708 TACCCTTTATTTACAAAATTA-TCATTT
1 TACCCTCGATTTACAAAATTACT-ATTT
* * *
81782735 TACCCTCGATTGATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
*
81782762 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
81782789 TACCCTCGATTTACAAAATTATTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* **
81782816 TACCCTCAATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
81782843 TACCCTCAATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
81782870 TACCCT
1 TACCCT
81782876 TAGGGTGTTA
Statistics
Matches: 381, Mismatches: 53, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.00
27 379 0.99
28 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:81782442 original size:81 final size:81
Alignment explanation
Indices: 81782357--81782542 Score: 221
Period size: 81 Copynumber: 2.3 Consensus size: 81
81782347 ATTACCGAAA
* *
81782357 TACCCTC-AGTTTGCAAAATTACTGAAATACCCTCGACATGTAAAATTATCAAAGTACCCTCGAA
1 TACCCTCGA-TTTACAAAATTACTGAAATACCCTCGACATATAAAATTATCAAAGTACCCTCGAA
* *
81782421 TTATAAAATTACTGTTT
65 TTACAAAATTACCGTTT
* *** ** **** *
81782438 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAAAATTATCGTTTTACCCTCGATT
1 TACCCTCGATTTACAAAATTACTGAAATACCCTCGACATATAAAATTATCAAAGTACCCTCGAAT
81782503 TACAAAATTACCGTTT
66 TACAAAATTACCGTTT
81782519 TACCCTCGATTTACAAAATTACTG
1 TACCCTCGATTTACAAAATTACTG
81782543 TTTTACCTTC
Statistics
Matches: 88, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
81 87 0.99
82 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.09, T:0.36
Consensus pattern (81 bp):
TACCCTCGATTTACAAAATTACTGAAATACCCTCGACATATAAAATTATCAAAGTACCCTCGAAT
TACAAAATTACCGTTT
Found at i:81783416 original size:6 final size:6
Alignment explanation
Indices: 81783377--81783495 Score: 66
Period size: 6 Copynumber: 19.3 Consensus size: 6
81783367 TTGCATTCAC
* * * *
81783377 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTGTA ATTCT-
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
81783425 ATCACCTA ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG ATTCTC
1 AT--TCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
*
81783476 ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
81783496 AATGTTTCTT
Statistics
Matches: 86, Mismatches: 16, Indels: 22
0.69 0.13 0.18
Matches are distributed among these distances:
5 6 0.07
6 67 0.78
7 9 0.10
8 4 0.05
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:81783436 original size:25 final size:25
Alignment explanation
Indices: 81783408--81783474 Score: 89
Period size: 25 Copynumber: 2.7 Consensus size: 25
81783398 CCTGATACTG
*
81783408 ATTCTGATTGTAATTCTATCACCTA
1 ATTCTGATTCTAATTCTATCACCTA
* * *
81783433 ATTCTGATTCTGATTCTGTCACCTG
1 ATTCTGATTCTAATTCTATCACCTA
*
81783458 ATTCTGATTCTGATTCT
1 ATTCTGATTCTAATTCT
81783475 CATTTTGATT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.21, C:0.21, G:0.12, T:0.46
Consensus pattern (25 bp):
ATTCTGATTCTAATTCTATCACCTA
Found at i:81783468 original size:31 final size:30
Alignment explanation
Indices: 81783377--81783474 Score: 98
Period size: 31 Copynumber: 3.4 Consensus size: 30
81783367 TTGCATTCAC
* *
81783377 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGAT-CTG
* * *
81783408 ATTCTGATTGTAATTCTATCACCT-A----
1 ATTCTGATTCTGATTCTGTCACCTGATCTG
81783433 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGA-TCTG
81783464 ATTCTGATTCT
1 ATTCTGATTCT
81783475 CATTTTGATT
Statistics
Matches: 54, Mismatches: 7, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
25 21 0.39
26 1 0.02
30 1 0.02
31 31 0.57
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.47
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTCACCTGATCTG
Found at i:81788106 original size:40 final size:40
Alignment explanation
Indices: 81788061--81788183 Score: 167
Period size: 40 Copynumber: 3.1 Consensus size: 40
81788051 CTGTCGGGTT
*
81788061 TTAGCCCGG-ATATGGTCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGAAT-TAGTCACTAGCACAAATGCCTTCGGGAC
* * *
81788101 TTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGAGAC
1 TTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGAC
* * *
81788141 TTAGCCCAGAATTAATCACTAGCACAAATGTCTTCGGGAC
1 TTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGAC
81788181 TTA
1 TTA
81788184 ACCCCGTTAG
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
40 70 0.97
41 2 0.03
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGAC
Found at i:81796607 original size:46 final size:46
Alignment explanation
Indices: 81796557--81796729 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
81796547 TGGTTGAGCA
81796557 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
81796603 TCCGAACTCGTTCAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
81796648 CATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
81796696 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
81796730 GGGCGGGTTA
Statistics
Matches: 103, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 59 0.57
47 27 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:81796713 original size:93 final size:93
Alignment explanation
Indices: 81796554--81796724 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
81796544 GGATGGTTGA
* *
81796554 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTCAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTCAGT
81796619 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
81796647 GCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTCAGT
81796712 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
81796725 ACTTAGGGCG
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTCAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:81810085 original size:48 final size:48
Alignment explanation
Indices: 81810027--81810354 Score: 550
Period size: 48 Copynumber: 6.9 Consensus size: 48
81810017 ATATACACAC
* *
81810027 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
81810075 ATCTCATACATATTTCACACTA-CCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
81810122 ATCTCATACATATTTCACGTTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
81810170 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACCT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
81810218 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACCT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
81810266 ATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
81810314 ATCTCATATATATTTCACACTAGCCATTCAGCTTTACCACA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACA
81810355 CACATATATA
Statistics
Matches: 266, Mismatches: 13, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
47 45 0.17
48 221 0.83
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:81814807 original size:24 final size:24
Alignment explanation
Indices: 81814762--81814807 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
81814752 TATTGAACTG
* *
81814762 AAACGGTAAGCTCTGACGAGCTAA
1 AAACAGTAAGCTCTGACAAGCTAA
* *
81814786 AAACAGTAAGCTTTTACAAGCT
1 AAACAGTAAGCTCTGACAAGCT
81814808 GATATATCGG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.22
Consensus pattern (24 bp):
AAACAGTAAGCTCTGACAAGCTAA
Found at i:81815298 original size:26 final size:25
Alignment explanation
Indices: 81815251--81815302 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 25
81815241 GTTTTATTTT
*
81815251 ATTAACCTTAATACATAAATTACTAA
1 ATTAACCTTAATACAAAAATTA-TAA
*
81815277 ATTAACTTTAATA-AAAACATTATAA
1 ATTAACCTTAATACAAAA-ATTATAA
81815302 A
1 A
81815303 ACCTGTAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.35
Consensus pattern (25 bp):
ATTAACCTTAATACAAAAATTATAA
Found at i:81816764 original size:18 final size:18
Alignment explanation
Indices: 81816741--81816818 Score: 84
Period size: 18 Copynumber: 4.3 Consensus size: 18
81816731 AATAAGTACA
*
81816741 AAATTAACCGAATTGACC
1 AAATTAACCGAATTAACC
*
81816759 AAATTAATCGAATTAACC
1 AAATTAACCGAATTAACC
* * *
81816777 GAATTACCCGAATTACCC
1 AAATTAACCGAATTAACC
* *
81816795 CAATTAACTGAATTAACC
1 AAATTAACCGAATTAACC
*
81816813 GAATTA
1 AAATTA
81816819 TTTGTATAAA
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 49 1.00
ACGTcount: A:0.44, C:0.22, G:0.09, T:0.26
Consensus pattern (18 bp):
AAATTAACCGAATTAACC
Found at i:81816790 original size:27 final size:26
Alignment explanation
Indices: 81816742--81816818 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 26
81816732 ATAAGTACAA
* * *
81816742 AATTAACCGAATTGACCAAATTAATCG
1 AATTAACCGAATT-ACCGAATTAACCC
*
81816769 AATTAACCGAATTACCCGAATTACCCC
1 AATTAACCGAATTA-CCGAATTAACCC
*
81816796 AATTAACTGAATTAACCGAATTA
1 AATTAACCGAATT-ACCGAATTA
81816819 TTTGTATAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
26 1 0.02
27 41 0.95
28 1 0.02
ACGTcount: A:0.43, C:0.22, G:0.09, T:0.26
Consensus pattern (26 bp):
AATTAACCGAATTACCGAATTAACCC
Found at i:81820017 original size:39 final size:39
Alignment explanation
Indices: 81819900--81820108 Score: 323
Period size: 39 Copynumber: 5.3 Consensus size: 39
81819890 ACTCCTCGTT
* *
81819900 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
81819940 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
81819980 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
81820019 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
81820058 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
81820097 CAAATGCCTTCG
1 CAAATGCCTTCG
81820109 AATCTTAGTC
Statistics
Matches: 161, Mismatches: 6, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
39 113 0.70
40 46 0.29
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:81820145 original size:78 final size:78
Alignment explanation
Indices: 81819900--81820161 Score: 302
Period size: 78 Copynumber: 3.3 Consensus size: 78
81819890 ACTCCTCGTT
* * * *
81819900 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCC
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTCGAG-CTTAGCCC
* * *
81819963 GGATTTAGTAACTCGCA
62 GGAATTAGTATCTAGCA
*
81819980 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGAA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGAGCTTAGCCCGGAA
*
81820045 TTAGTATCTCGCA
66 TTAGTATCTAGCA
* *
81820058 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGAATCTTAGTCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCG-AGCTTAGCCCGGA
81820123 TATT-GTCA-CTTAGCA
65 -ATTAGT-ATC-TAGCA
81820138 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
81820162 CATCATTCAA
Statistics
Matches: 166, Mismatches: 9, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
78 84 0.51
79 58 0.35
80 24 0.14
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGAGCTTAGCCCGGAA
TTAGTATCTAGCA
Found at i:81826899 original size:39 final size:40
Alignment explanation
Indices: 81826782--81827004 Score: 257
Period size: 39 Copynumber: 5.7 Consensus size: 40
81826772 GCTCCTCGTT
* *
81826782 CAAATGCCTTCGGGACATAGCCCGGTCA-TAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-AATTAGT-ATCTCGCA
* * *
81826822 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
*
81826862 CAAATGCCTTCGTG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
81826901 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
81826940 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
81826981 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
81827005 CATCATTCAA
Statistics
Matches: 162, Mismatches: 13, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
38 2 0.01
39 88 0.54
40 63 0.39
41 9 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:81826959 original size:79 final size:81
Alignment explanation
Indices: 81826782--81827004 Score: 252
Period size: 79 Copynumber: 2.8 Consensus size: 81
81826772 GCTCCTCGTT
* * *
81826782 CAAATGCCTTCGGGA-CATAGCCCGGTCA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAACC
1 CAAATGCCTTC-GGATCTTAGCCCGG-AATTAGTAATCTCGCACAAATGCCTTCGGGACTTAGCC
*
81826844 CGGATTTAGTAACTCGCA
64 CGGAATTAGTAACTCGCA
81826862 CAAATGCCTTC-G-TGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCC
1 CAAATGCCTTCGGAT-CTTAGCCCGGAATTAGTAATCTCGCACAAATGCCTTCGGGACTTAGCCC
*
81826923 GGAATTAGTATCTCGCA
65 GGAATTAGTAACTCGCA
* * *
81826940 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCAC-AA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGATCTTAGCCCGGA-ATTAGTAATC-TCGCACAAATGCCTTCGGGACTTAGCC
81827001 CGGA
64 CGGA
81827005 CATCATTCAA
Statistics
Matches: 126, Mismatches: 7, Indels: 21
0.82 0.05 0.14
Matches are distributed among these distances:
78 46 0.37
79 59 0.47
80 21 0.17
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGATCTTAGCCCGGAATTAGTAATCTCGCACAAATGCCTTCGGGACTTAGCCCG
GAATTAGTAACTCGCA
Found at i:81828732 original size:47 final size:47
Alignment explanation
Indices: 81828680--81829078 Score: 588
Period size: 47 Copynumber: 8.4 Consensus size: 47
81828670 TTATAATATT
* *
81828680 TATACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCACATA
1 TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATA
*
81828727 TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATA
1 TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATA
* *
81828774 TATGCA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATA
1 TATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATA
* * *
81828821 TATGCA-TGTTCACATGCATCACATTGGCCATTCGGCCTTATCACACA
1 TATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATA
*
81828868 TACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
1 TATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATA
81828917 TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATA
1 TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATA
* * *
81828964 TATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATA
1 TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATA
* *
81829011 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATA
81829060 TATACACTTTCACATTCAT
1 TATACACTTTCACATTCAT
81829079 TCAAATATAC
Statistics
Matches: 330, Mismatches: 16, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 263 0.80
49 65 0.20
50 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.34
Consensus pattern (47 bp):
TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATA
Found at i:81828984 original size:143 final size:143
Alignment explanation
Indices: 81828680--81829078 Score: 610
Period size: 143 Copynumber: 2.8 Consensus size: 143
81828670 TTATAATATT
*
81828680 TATACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCA
1 TATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCA
* *
81828745 TCACATTGGCCATTCGGCCTTATCTC--ATATATGCA-TGTTCACATTCATCACATTGGCCATTC
66 TCACATTGGCCATTCGGCCTTATCACATATATATACACT-TTCACATTCATCACATTGGCCATTC
*
81828807 GGCCTTATCTCATA
130 GGCCTTATCACATA
* * * *
81828821 TATGCA-TGTTCACATGCATCACATTGGCCATTCGGCCTTATCACACATACACA-TGTTCACATT
1 TATACACT-TTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACACT-TTCACATT
81828884 CATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATT
64 CATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATT
81828949 CGGCCTTATCACATA
129 CGGCCTTATCACATA
* * * *
81828964 TATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCA
1 TATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCA
* *
81829029 TCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
66 TCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCAT
81829079 TCAAATATAC
Statistics
Matches: 234, Mismatches: 17, Indels: 12
0.89 0.06 0.05
Matches are distributed among these distances:
140 2 0.01
141 81 0.35
143 148 0.63
144 3 0.01
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.34
Consensus pattern (143 bp):
TATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCA
TCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCG
GCCTTATCACATA
Done.