Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 247 of 349
Found at i:81829025 original size:190 final size:188
Alignment explanation
Indices: 81828690--81829055 Score: 583
Period size: 190 Copynumber: 1.9 Consensus size: 188
81828680 TATACACTTC
81828690 CACATCCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGGC
1 CACATCCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGGC
* * * * *
81828755 CATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCAT
66 CATTCGGCCTTATCACATATATACATGTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
* * *
81828820 ATATGCATGTTCACATGCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
131 ATATACATGTTCACATGCATCACATCGGCCATTAGGCCTTATCACACATACACATGTT
*
81828878 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATTG
1 CACATCCATCACATTGGCCATTCGGCCTTATCAC--ATATATACACTTTCACATTCATCACATTG
*
81828943 GCCATTCGGCCTTATCACATATATACACT-TTCACATTCATCACATCGGCTATTAGGCCTTATCA
64 GCCATTCGGCCTTATCACATATATACA-TGTTCACATTCATCACATCGGCCATTAGGCCTTATCA
*
81829007 CATATATACACT-TTCACATTCATCACATCGGCCATTAGGCCTTATCACA
128 CATATATACA-TGTTCACATGCATCACATCGGCCATTAGGCCTTATCACA
81829056 TATATATACA
Statistics
Matches: 163, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
188 33 0.20
190 128 0.79
191 2 0.01
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (188 bp):
CACATCCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGGC
CATTCGGCCTTATCACATATATACATGTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
ATATACATGTTCACATGCATCACATCGGCCATTAGGCCTTATCACACATACACATGTT
Found at i:81831555 original size:16 final size:16
Alignment explanation
Indices: 81831519--81831557 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
81831509 ATTATTTTGA
* *
81831519 ATTTCATTATTAGATT
1 ATTTTATTATTAGACT
*
81831535 GTTTTATTATTAGACT
1 ATTTTATTATTAGACT
81831551 ATTTTAT
1 ATTTTAT
81831558 AGTAATTAAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.28, C:0.05, G:0.08, T:0.59
Consensus pattern (16 bp):
ATTTTATTATTAGACT
Found at i:81832614 original size:37 final size:37
Alignment explanation
Indices: 81832564--81832637 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
81832554 GTGTTAGAGA
*
81832564 ACAACATTCTTTGATTATTAGGTGATAGTCACAACCC
1 ACAACATTCTTTGATTATTAGGTAATAGTCACAACCC
81832601 ACAACATTCTTTGATTATTAGGTAATAGTCACAACCC
1 ACAACATTCTTTGATTATTAGGTAATAGTCACAACCC
81832638 TACTCATAGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.34, C:0.22, G:0.12, T:0.32
Consensus pattern (37 bp):
ACAACATTCTTTGATTATTAGGTAATAGTCACAACCC
Found at i:81834609 original size:58 final size:58
Alignment explanation
Indices: 81834515--81834627 Score: 190
Period size: 58 Copynumber: 1.9 Consensus size: 58
81834505 CTAGAACAAA
* * *
81834515 TTCTGGAGTTTGTTAGGCTTTGGAGAGAAATAGCTCGTGATGTGGCTGTCTCGACGAT
1 TTCTGGAGTTTGCTAGGCTTTAGAGAGAAATAGCTCGTAATGTGGCTGTCTCGACGAT
*
81834573 TTCTGGAGTTTGCTAGGCTTTAGAGAGAAATGGCTCGTAATGTGGCTGTCTCGAC
1 TTCTGGAGTTTGCTAGGCTTTAGAGAGAAATAGCTCGTAATGTGGCTGTCTCGAC
81834628 AATCAAAGAT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 51 1.00
ACGTcount: A:0.19, C:0.15, G:0.32, T:0.34
Consensus pattern (58 bp):
TTCTGGAGTTTGCTAGGCTTTAGAGAGAAATAGCTCGTAATGTGGCTGTCTCGACGAT
Found at i:81842578 original size:27 final size:28
Alignment explanation
Indices: 81842494--81842591 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
81842484 CATGAGATTG
* * * *
81842494 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
81842523 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
81842551 GCACTAAGTCTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
81842578 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
81842592 GACTTAATAT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 23 0.37
28 21 0.34
29 18 0.29
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:81842605 original size:29 final size:27
Alignment explanation
Indices: 81842522--81842605 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
81842512 TAAATTGTAC
* * *
81842522 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTCTGCGA-CTTAATTATAT
* *
81842550 AGCACTAAGTCTGCGAGTTGATTATAT
1 AGCACTAAGTCTGCGACTTAATTATAT
* *
81842577 AGCACTGAGTGTGCGGACTTAATATATAT
1 AGCACTAAGTCTGC-GACTTAAT-TATAT
81842606 TTTTGAATCA
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
27 22 0.46
28 21 0.44
29 5 0.10
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTCTGCGACTTAATTATAT
Found at i:81845011 original size:43 final size:42
Alignment explanation
Indices: 81844956--81845094 Score: 112
Period size: 43 Copynumber: 3.3 Consensus size: 42
81844946 ATATCGTACA
*
81844956 ATGCCAAC-GTCCCAAATGTGGTCTTACATGCTATCACATATCG
1 ATGCCAACTGTCCCAAAAGTGGTCTTACA-G-TATCACATATCG
* *
81844999 ATGCC-ACTGTCCCAAACAG-GGTCTTACAGAAATCAAATA-CG
1 ATGCCAACTGTCCCAAA-AGTGGTCTTACAG-TATCACATATCG
* *
81845040 ATGCCGA-TGTCCCAGACA-TGGTCTTACACGTAATCACATATCG
1 ATGCCAACTGTCCCA-AAAGTGGTCTTACA-GT-ATCACATATCG
*
81845083 ACGCCAA-TGTCC
1 ATGCCAACTGTCC
81845095 AAGATATGGT
Statistics
Matches: 79, Mismatches: 9, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
41 24 0.30
42 20 0.25
43 34 0.43
44 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (42 bp):
ATGCCAACTGTCCCAAAAGTGGTCTTACAGTATCACATATCG
Found at i:81845104 original size:43 final size:43
Alignment explanation
Indices: 81844974--81845126 Score: 159
Period size: 43 Copynumber: 3.6 Consensus size: 43
81844964 GTCCCAAATG
* ** *
81844974 TGGTCTTACATGCTATCACATATCGATGCCACTGTCCCAA-ACA
1 TGGTCTTACACGAAATCACATATCGATGCCAATGT-CCAAGACA
* * * *
81845017 GGGTCTTACA-GAAATCAAATA-CGATGCCGATGTCCCAGACA
1 TGGTCTTACACGAAATCACATATCGATGCCAATGTCCAAGACA
* * *
81845058 TGGTCTTACACGTAATCACATATCGACGCCAATGTCCAAGATA
1 TGGTCTTACACGAAATCACATATCGATGCCAATGTCCAAGACA
* *
81845101 TGGTATTACACGAAAACACATATCGA
1 TGGTCTTACACGAAATCACATATCGA
81845127 AAATCCTATG
Statistics
Matches: 90, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
40 3 0.03
41 22 0.24
42 17 0.19
43 48 0.53
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.24
Consensus pattern (43 bp):
TGGTCTTACACGAAATCACATATCGATGCCAATGTCCAAGACA
Found at i:81846932 original size:29 final size:29
Alignment explanation
Indices: 81846889--81847042 Score: 161
Period size: 29 Copynumber: 5.3 Consensus size: 29
81846879 CAAAGTCTCA
* * *
81846889 CCACAAAGGC-ATCTTTTGACAAAGACTG
1 CCACAAAGGCTTTCTTTTAACAAAGATTG
*
81846917 CCACAAAGGCTTTCTTTTAA-AAGAGATTA
1 CCACAAAGGCTTTCTTTTAACAA-AGATTG
81846946 CCACAAAGGCTTTCTTTTAACAAAGATTG
1 CCACAAAGGCTTTCTTTTAACAAAGATTG
* *
81846975 TCACAAAGGC-TTCATTTTAACAAAGATAG
1 CCACAAAGGCTTTC-TTTTAACAAAGATTG
* * * * **
81847004 TCACAAAGGCTTCCTTTTAATAGAGATCA
1 CCACAAAGGCTTTCTTTTAACAAAGATTG
81847033 CCACAAAGGC
1 CCACAAAGGC
81847043 ATCGTTTTAC
Statistics
Matches: 108, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
28 15 0.14
29 89 0.82
30 4 0.04
ACGTcount: A:0.37, C:0.21, G:0.15, T:0.27
Consensus pattern (29 bp):
CCACAAAGGCTTTCTTTTAACAAAGATTG
Found at i:81847051 original size:87 final size:85
Alignment explanation
Indices: 81846890--81847060 Score: 220
Period size: 87 Copynumber: 2.0 Consensus size: 85
81846880 AAAGTCTCAC
* * *
81846890 CACAAAGGCATCTTTTGACAAAGACTGCCACAAAGGCTTTCTTTTAAAAGAGATTACCACAAAGG
1 CACAAAGGCATCTTTTAACAAAGACTGCCACAAAGGCTTCCTTTTAAAAGAGATCACCACAAAGG
* *
81846955 CTTTCTTTTAACAAAGATTGT
66 CTATCTTTT-ACAAAAATTGT
* * *
81846976 CACAAAGGCTTCATTTTAACAAAGA-TAGTCACAAAGGCTTCCTTTTAATAGAGATCACCACAAA
1 CACAAAGGCATC-TTTTAACAAAGACT-GCCACAAAGGCTTCCTTTTAAAAGAGATCACCACAAA
81847040 GGC-ATCGTTTTACAAAAATTG
64 GGCTATC-TTTTACAAAAATTG
81847061 ACATAAAAGA
Statistics
Matches: 74, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
86 23 0.31
87 51 0.69
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.28
Consensus pattern (85 bp):
CACAAAGGCATCTTTTAACAAAGACTGCCACAAAGGCTTCCTTTTAAAAGAGATCACCACAAAGG
CTATCTTTTACAAAAATTGT
Found at i:81852189 original size:16 final size:16
Alignment explanation
Indices: 81852170--81852213 Score: 81
Period size: 16 Copynumber: 2.8 Consensus size: 16
81852160 GTATCTGTGG
81852170 TACCAAGAGAGAGGAT
1 TACCAAGAGAGAGGAT
81852186 TACCAAGAGAGAGGAT
1 TACCAAGAGAGAGGAT
81852202 TA-CAAGAGAGAG
1 TACCAAGAGAGAG
81852214 AAGTACATCA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
15 10 0.36
16 18 0.64
ACGTcount: A:0.45, C:0.11, G:0.32, T:0.11
Consensus pattern (16 bp):
TACCAAGAGAGAGGAT
Found at i:81855508 original size:40 final size:40
Alignment explanation
Indices: 81855453--81855600 Score: 251
Period size: 40 Copynumber: 3.7 Consensus size: 40
81855443 GAAAAAAAAA
* *
81855453 TATAACCGGGTTAAGTCCTGAAGGCATTCGTACGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
81855493 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* *
81855533 TATAGCCGGGTTAAGTCCCAAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
81855573 TATAACCGGGTTAAGTCTCGAAGGCATT
1 TATAACCGGGTTAAGTCCCGAAGGCATT
81855601 TATGTTTGGA
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 101 1.00
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.28
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:81869383 original size:27 final size:26
Alignment explanation
Indices: 81869327--81869383 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
81869317 CAACCTTAAC
* * *
81869327 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
* *
81869353 CCTAGTGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
81869380 CCTA
1 CCTA
81869384 TAAAGGTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.37
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:81873465 original size:13 final size:13
Alignment explanation
Indices: 81873447--81873483 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
81873437 GGTGTAGAGG
*
81873447 ACACATGGCCAAA
1 ACACATGCCCAAA
81873460 ACACATGCCCAAA
1 ACACATGCCCAAA
81873473 ACACATGCCCA
1 ACACATGCCCA
81873484 CACACGCCCG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.43, C:0.38, G:0.11, T:0.08
Consensus pattern (13 bp):
ACACATGCCCAAA
Found at i:81875114 original size:24 final size:24
Alignment explanation
Indices: 81875087--81875135 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
81875077 TATACAAAAG
81875087 AATGAGTATACCATTTAAACCCTT
1 AATGAGTATACCATTTAAACCCTT
*
81875111 AATGAGTATACTATTTAAACCCTT
1 AATGAGTATACCATTTAAACCCTT
81875135 A
1 A
81875136 CATTGGCTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (24 bp):
AATGAGTATACCATTTAAACCCTT
Found at i:81880206 original size:40 final size:40
Alignment explanation
Indices: 81880162--81880238 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
81880152 TAGTGCCACA
*
81880162 TATAGCCAAAGCTATTCCAATTAGCACACTCAGTGCTATT
1 TATAGCCAAAGCTATTCCAAATAGCACACTCAGTGCTATT
* * * *
81880202 TATAGCCGAAGCTATTTCAAATCGCACACTTAGTGCT
1 TATAGCCAAAGCTATTCCAAATAGCACACTCAGTGCT
81880239 GAACATAGTC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (40 bp):
TATAGCCAAAGCTATTCCAAATAGCACACTCAGTGCTATT
Found at i:81887161 original size:40 final size:40
Alignment explanation
Indices: 81887110--81887199 Score: 110
Period size: 40 Copynumber: 2.2 Consensus size: 40
81887100 AACAATATTG
* *
81887110 CACACTTAGTGCCACATATAGTCGAAGCTA-TTCCAATTCA
1 CACACTTAGTGCCACATATAGGCGAAGCTATTTCAAATT-A
* ** *
81887150 CACACTTAGTGCTATTTATAGGCGAAGCTATTTCAAATTG
1 CACACTTAGTGCCACATATAGGCGAAGCTATTTCAAATTA
81887190 CACACTTAGT
1 CACACTTAGT
81887200 ACCGAACATA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
40 36 0.84
41 7 0.16
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.31
Consensus pattern (40 bp):
CACACTTAGTGCCACATATAGGCGAAGCTATTTCAAATTA
Found at i:81888912 original size:15 final size:16
Alignment explanation
Indices: 81888880--81888913 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
81888870 AAGGTTAAAT
*
81888880 AAGTAAATTAGTATTA
1 AAGTAAATTAGAATTA
81888896 AAGTAAATT-GAATTA
1 AAGTAAATTAGAATTA
81888911 AAG
1 AAG
81888914 AAAAACAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.53, C:0.00, G:0.15, T:0.32
Consensus pattern (16 bp):
AAGTAAATTAGAATTA
Found at i:81889829 original size:48 final size:47
Alignment explanation
Indices: 81889756--81889946 Score: 249
Period size: 48 Copynumber: 4.0 Consensus size: 47
81889746 CATTAGGGAA
** *
81889756 TTCATTGATTTGGCTTCAAGCCATGATATTGGCACTTCGTGTGCGAG
1 TTCATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGGGTGCGAG
* * *
81889803 CTTCATTGATTTGGCTTCGGGGCATGATATTGGCACTTCGGATGAGAG
1 -TTCATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGGGTGCGAG
* * *
81889851 TTACATTGATTTGGCTTCGTGG-CATGATATCGACACTTTGGGTGCGAG
1 TT-CATTGATTTGGCTTCG-GGCCATGATATTGGCACTTCGGGTGCGAG
*
81889899 TTTCATTGATTTGGCTTCGGGCCATGATATTGGCACTTAGGGTGCGAG
1 -TTCATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGGGTGCGAG
81889947 ACTCCCAAGT
Statistics
Matches: 125, Mismatches: 14, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
47 4 0.03
48 117 0.94
49 4 0.03
ACGTcount: A:0.18, C:0.17, G:0.29, T:0.35
Consensus pattern (47 bp):
TTCATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGGGTGCGAG
Found at i:81889925 original size:96 final size:96
Alignment explanation
Indices: 81889758--81889936 Score: 277
Period size: 96 Copynumber: 1.9 Consensus size: 96
81889748 TTAGGGAATT
* * *
81889758 CATTGATTTGGCTTCAAGCCATGATATTGGCACTTCGTGTGCGAGCTTCATTGATTTGGCTTCGG
1 CATTGATTTGGCTTCAAGCCATGATATCGACACTTCGGGTGCGAGCTTCATTGATTTGGCTTCGG
*
81889823 GGCATGATATTGGCACTTCGGATGAGAGTTA
66 GCCATGATATTGGCACTTCGGATGAGAGTTA
** * * *
81889854 CATTGATTTGGCTTCGTGGCATGATATCGACACTTTGGGTGCGAGTTTCATTGATTTGGCTTCGG
1 CATTGATTTGGCTTCAAGCCATGATATCGACACTTCGGGTGCGAGCTTCATTGATTTGGCTTCGG
81889919 GCCATGATATTGGCACTT
66 GCCATGATATTGGCACTT
81889937 AGGGTGCGAG
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
96 74 1.00
ACGTcount: A:0.18, C:0.18, G:0.28, T:0.36
Consensus pattern (96 bp):
CATTGATTTGGCTTCAAGCCATGATATCGACACTTCGGGTGCGAGCTTCATTGATTTGGCTTCGG
GCCATGATATTGGCACTTCGGATGAGAGTTA
Found at i:81894360 original size:15 final size:15
Alignment explanation
Indices: 81894336--81894365 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
81894326 AAATAAAATT
81894336 GAAAAAAAAACTTTA
1 GAAAAAAAAACTTTA
*
81894351 GAAAACAAAACTTTA
1 GAAAAAAAAACTTTA
81894366 TCCTAATCTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.10, G:0.07, T:0.20
Consensus pattern (15 bp):
GAAAAAAAAACTTTA
Found at i:81894638 original size:5 final size:5
Alignment explanation
Indices: 81894628--81894675 Score: 71
Period size: 5 Copynumber: 9.4 Consensus size: 5
81894618 TCATCTATTT
81894628 ATATA ATATA ATA-A CATATAA ATATA ATATA ATATA ATATA ATATA AT
1 ATATA ATATA ATATA -ATAT-A ATATA ATATA ATATA ATATA ATATA AT
81894676 TATTAGTATT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
4 1 0.03
5 34 0.85
6 4 0.10
7 1 0.03
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (5 bp):
ATATA
Found at i:81896477 original size:28 final size:24
Alignment explanation
Indices: 81896408--81896497 Score: 103
Period size: 23 Copynumber: 3.7 Consensus size: 24
81896398 TTATTTAAAC
*
81896408 AAATACTCATA-TTTATATAATTA
1 AAATATTCATATTTTATATAATTA
81896431 AAATATTCATAATTTTATACTAAGTTA
1 AAATATTCAT-ATTTTATA-TAA-TTA
*
81896458 AAATATGTCATA-TTTATATAAATA
1 AAATAT-TCATATTTTATATAATTA
*
81896482 AAATATCCATATTTTA
1 AAATATTCATATTTTA
81896498 CTATCAGTTA
Statistics
Matches: 58, Mismatches: 3, Indels: 11
0.81 0.04 0.15
Matches are distributed among these distances:
23 13 0.22
24 13 0.22
25 9 0.16
26 9 0.16
27 10 0.17
28 4 0.07
ACGTcount: A:0.47, C:0.08, G:0.02, T:0.43
Consensus pattern (24 bp):
AAATATTCATATTTTATATAATTA
Found at i:81896779 original size:44 final size:41
Alignment explanation
Indices: 81896695--81896781 Score: 111
Period size: 44 Copynumber: 2.0 Consensus size: 41
81896685 ATTGAAATAA
* * *
81896695 AATAGAAGTTGTGATAACACATTCAAAAATAACTATAATTT
1 AATAGAAGTTGTGATAACACATTAAAAAAAAACTAGAATTT
*
81896736 AATAGAAGTTGTGATCATTACACATTAAAAAAAAATTAGAATTT
1 AATAGAAGTTGTGAT-A--ACACATTAAAAAAAAACTAGAATTT
81896780 AA
1 AA
81896782 ATTAAAATTA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
41 15 0.38
42 1 0.03
44 23 0.59
ACGTcount: A:0.51, C:0.08, G:0.10, T:0.31
Consensus pattern (41 bp):
AATAGAAGTTGTGATAACACATTAAAAAAAAACTAGAATTT
Found at i:81899682 original size:27 final size:27
Alignment explanation
Indices: 81899644--81899696 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
81899634 AAGAAAAAAA
81899644 ATAATAATGGTCTCATGCATACACCCC
1 ATAATAATGGTCTCATGCATACACCCC
81899671 ATAATAATGGTCTCATGCATACACCC
1 ATAATAATGGTCTCATGCATACACCC
81899697 ATTGCCGTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.34, C:0.28, G:0.11, T:0.26
Consensus pattern (27 bp):
ATAATAATGGTCTCATGCATACACCCC
Found at i:81901017 original size:27 final size:27
Alignment explanation
Indices: 81900986--81901163 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
81900976 TAAATTGTAC
81900986 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
81901013 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
81901039 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
81901067 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
81901095 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
81901122 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
81901149 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
81901164 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:81901100 original size:82 final size:81
Alignment explanation
Indices: 81900987--81901142 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
81900977 AAATTGTACA
* *
81900987 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
81901051 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
81901068 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
81901133 TGCGAGTTGA
65 TGCGAATTGA
81901143 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:81901154 original size:82 final size:81
Alignment explanation
Indices: 81900983--81901163 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
81900973 GATTAAATTG
* *
81900983 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
81901048 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
81901064 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
81901128 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
81901146 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
81901164 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:81909076 original size:27 final size:27
Alignment explanation
Indices: 81909045--81909221 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
81909035 TAAATTGTAC
81909045 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
81909072 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
81909098 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
81909126 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
81909154 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
81909181 AGCACTAAGTGTGCGAGTTGA-TATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
81909207 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
81909222 GACTCAATAT
Statistics
Matches: 128, Mismatches: 19, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
26 17 0.13
27 88 0.69
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:81909159 original size:82 final size:81
Alignment explanation
Indices: 81909046--81909201 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
81909036 AAATTGTACA
* *
81909046 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
81909110 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
81909127 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
81909192 TGCGAGTTGA
65 TGCGAATTGA
81909202 TATATAGCAC
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:81914783 original size:28 final size:28
Alignment explanation
Indices: 81914751--81914812 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
81914741 GCCTGGCCCA
* * * *
81914751 TGTCCTTCACACTGCCATGACACGCTCG
1 TGTCCTTCACACGGCCATGAAACACCCG
81914779 TGTCCTTCACACGGCCATGAAACACCCG
1 TGTCCTTCACACGGCCATGAAACACCCG
81914807 TGTCCT
1 TGTCCT
81914813 AGCCCGTGTG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.19, C:0.39, G:0.18, T:0.24
Consensus pattern (28 bp):
TGTCCTTCACACGGCCATGAAACACCCG
Found at i:81915927 original size:46 final size:45
Alignment explanation
Indices: 81915786--81915949 Score: 161
Period size: 47 Copynumber: 3.5 Consensus size: 45
81915776 GTACCGACGT
* * * *
81915786 CATGTCCCAGACACAGTCTTACACTAACTCATATCTCATGTCGATG
1 CATGTCCCAGACA-TGTCTTACACTGACTTATATCTCAAGTCGATG
*
81915832 CCATGTCCCAGACATAGTCTTACACTGACTT-TCATCTCATAGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGACTTAT-ATCTCA-AGTCGATG
* * * *
81915880 CATGTCCCAGACATGTCTTACACTGGCTTATATATCGAGGTCAATG
1 CATGTCCCAGACATGTCTTACACTGACTTATATCTC-AAGTCGATG
*
81915926 CATGTCCTTA-ACATGTCTTACACT
1 CATGTCC-CAGACATGTCTTACACT
81915950 AGCACTCGTC
Statistics
Matches: 100, Mismatches: 11, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
46 45 0.45
47 49 0.49
48 6 0.06
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.30
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGACTTATATCTCAAGTCGATG
Found at i:81916021 original size:94 final size:92
Alignment explanation
Indices: 81915873--81916046 Score: 223
Period size: 94 Copynumber: 1.9 Consensus size: 92
81915863 TCATCTCATA
*
81915873 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTATATATCGAGGTCAATGCATGTC-CTTA-
1 GCCGATGCAGGTCCCAGACATGTCTTACACTGGCTTATATATCGAGGTCAATGCATGTCGC--AG
81915936 ACATGTCTTACACTAGCACTCGTCTTAAT
64 ACATGTCTTACACTAGCACTCGTCTTAAT
* *
81915965 GCCGATGCTAGGTCCCAGACATGGTCTTACACTGGCTCTCATA-AT-GTGG-CTGATGCATGTCG
1 GCCGATGC-AGGTCCCAGACAT-GTCTTACACTGGCT-T-ATATATCGAGGTC-AATGCATGTCG
81916027 CAGACATGTCTTACACTAGC
61 CAGACATGTCTTACACTAGC
81916047 CCACAAATAC
Statistics
Matches: 72, Mismatches: 3, Indels: 12
0.83 0.03 0.14
Matches are distributed among these distances:
92 8 0.11
93 14 0.19
94 43 0.60
95 4 0.06
96 3 0.04
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (92 bp):
GCCGATGCAGGTCCCAGACATGTCTTACACTGGCTTATATATCGAGGTCAATGCATGTCGCAGAC
ATGTCTTACACTAGCACTCGTCTTAAT
Found at i:81919623 original size:43 final size:42
Alignment explanation
Indices: 81919576--81919670 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 42
81919566 AGACGTGCTC
* * *
81919576 TTACATGTAATCAAGTATCGATGCCACTATCCCAGACAGGGTG
1 TTACACGTAATCAAATAT-GATGCCAATATCCCAGACAGGGTG
** * * *
81919619 TTACACAAAATCAAATATGATGCCAATGTCCCAGACATGGTT
1 TTACACGTAATCAAATATGATGCCAATATCCCAGACAGGGTG
81919661 TTACACGTAA
1 TTACACGTAA
81919671 ATTTCAAATC
Statistics
Matches: 42, Mismatches: 10, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
42 28 0.67
43 14 0.33
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (42 bp):
TTACACGTAATCAAATATGATGCCAATATCCCAGACAGGGTG
Found at i:81919654 original size:42 final size:43
Alignment explanation
Indices: 81919584--81919666 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 43
81919574 TCTTACATGT
* *
81919584 AATCAAGTATCGATGCCACTATCCCAGACAGGGTGTTACACAA
1 AATCAAATATCGATGCCAATATCCCAGACAGGGTGTTACACAA
* * *
81919627 AATCAAATAT-GATGCCAATGTCCCAGACATGGTTTTACAC
1 AATCAAATATCGATGCCAATATCCCAGACAGGGTGTTACAC
81919667 GTAAATTTCA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
42 26 0.74
43 9 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (43 bp):
AATCAAATATCGATGCCAATATCCCAGACAGGGTGTTACACAA
Found at i:81920334 original size:164 final size:164
Alignment explanation
Indices: 81920084--81920397 Score: 592
Period size: 164 Copynumber: 1.9 Consensus size: 164
81920074 TTAGGGCATG
*
81920084 TTACAAATTAGCTCTCATATTTTCACATTTTAACACTTTAGTCCCTAATTCATAAAATCACAAAA
1 TTACAAATTAGCTCTCACATTTTCACATTTTAACACTTTAGTCCCTAATTCATAAAATCACAAAA
* *
81920149 TACACAAAATTTCCTTTTTCACATGCTTAGCCGAGTTTTCATGAAGTTCATATAAGTCCATATAT
66 TACACAAAATTTCCATTTTCACATGCTTAGCCGAATTTTCATGAAGTTCATATAAGTCCATATAT
81920214 TTCATTTATTTTATATTTTACCAAAAACACATAT
131 TTCATTTATTTTATATTTTACCAAAAACACATAT
*
81920248 TTACAGATTAGCTCTCACATTTTCACATTTTAACACTTTAGTCCCTAATTCATAAAATCACAAAA
1 TTACAAATTAGCTCTCACATTTTCACATTTTAACACTTTAGTCCCTAATTCATAAAATCACAAAA
81920313 TACACAAAATTTCCATTTTCACATGCTTAGCCGAATTTTCATGAAGTTCATATAAGTCCATATAT
66 TACACAAAATTTCCATTTTCACATGCTTAGCCGAATTTTCATGAAGTTCATATAAGTCCATATAT
81920378 TTCATTTATTTTATATTTTA
131 TTCATTTATTTTATATTTTA
81920398 GTCCCTTAAA
Statistics
Matches: 146, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
164 146 1.00
ACGTcount: A:0.35, C:0.19, G:0.06, T:0.40
Consensus pattern (164 bp):
TTACAAATTAGCTCTCACATTTTCACATTTTAACACTTTAGTCCCTAATTCATAAAATCACAAAA
TACACAAAATTTCCATTTTCACATGCTTAGCCGAATTTTCATGAAGTTCATATAAGTCCATATAT
TTCATTTATTTTATATTTTACCAAAAACACATAT
Found at i:81920929 original size:16 final size:16
Alignment explanation
Indices: 81920905--81920940 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
81920895 ATAGAAAATA
*
81920905 ATATTATGCAATTTTT
1 ATATCATGCAATTTTT
81920921 ATATCATGCAATTTTT
1 ATATCATGCAATTTTT
81920937 ATAT
1 ATAT
81920941 TTTACGTGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.33, C:0.08, G:0.06, T:0.53
Consensus pattern (16 bp):
ATATCATGCAATTTTT
Found at i:81921800 original size:50 final size:50
Alignment explanation
Indices: 81921691--81921967 Score: 212
Period size: 50 Copynumber: 5.7 Consensus size: 50
81921681 GGGTAAGATG
* * * * *
81921691 CCGACGCCATATCCCAGACATGGTCTTATACT--GTCTCATACATCGA-A
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAACTCTCATATATCGAGA
** * * *
81921738 GTTGATGTCATGTCCCAAACATGGTCTTATACTAACTCTCATATATCGAGA
1 -CCGATGCCATGTCCCAGACATGGTCTTACACTAACTCTCATATATCGAGA
* ** * * *
81921789 CCGATGCCATGTCCCAGACATGGTTTTACACTGGCTCTCATCTAT-TAGTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAACTCTCATATATCGAG-A
* * ** * * *
81921839 CCGATGCCATGTCCCAAACATGGTCTTACACTAGA-TTTCAGGTCTTGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTA-ACTCTCATATATCGAGA
* * *
81921889 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATA-AT-GTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAACTCTCATATATCGAGA
* *
81921937 CCGATG-CATGTCCTAGATAT-GTCTTACACTA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTA
81921968 GCACACATAT
Statistics
Matches: 185, Mismatches: 37, Indels: 16
0.78 0.16 0.07
Matches are distributed among these distances:
46 11 0.06
47 12 0.06
48 35 0.19
49 3 0.02
50 121 0.65
51 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (50 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAACTCTCATATATCGAGA
Found at i:81921893 original size:100 final size:100
Alignment explanation
Indices: 81921741--81921929 Score: 272
Period size: 100 Copynumber: 1.9 Consensus size: 100
81921731 CATCGAAGTT
* * *
81921741 GATGTCATGTCCCAAACATGGTCTTATACTAACTCTCATATATCGAGACCGATGCCATGTCCCAG
1 GATGCCATGTCCCAAACATGGTCTTACACTAACTCTCAGATATCGAGACCGATGCCATGTCCCAG
* *
81921806 ACATGGTTTTACACTGGCTCTCATCTATTAGTGCC
66 ACATGGTCTTACACTAGCTCTCATCTATTAGTGCC
* * * * *
81921841 GATGCCATGTCCCAAACATGGTCTTACACTAGA-TTTCAGGTCTTGAGGCCGATGCCATGTCCCA
1 GATGCCATGTCCCAAACATGGTCTTACACTA-ACTCTCAGATATCGAGACCGATGCCATGTCCCA
81921905 GACATGGTCTTACACTAGCTCTCAT
65 GACATGGTCTTACACTAGCTCTCAT
81921930 AATGTGGCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
100 77 0.99
101 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.30
Consensus pattern (100 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAACTCTCAGATATCGAGACCGATGCCATGTCCCAG
ACATGGTCTTACACTAGCTCTCATCTATTAGTGCC
Found at i:81926462 original size:20 final size:19
Alignment explanation
Indices: 81926437--81926486 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 19
81926427 TTAGATGACA
*
81926437 AAAAATCGAATGTTTGATC
1 AAAAATCGAACGTTTGATC
*
81926456 GAAAAATTGAACGTTTGATC
1 -AAAAATCGAACGTTTGATC
81926476 AAAAACTCGAA
1 AAAAA-TCGAA
81926487 AGACCTAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.46, C:0.12, G:0.16, T:0.26
Consensus pattern (19 bp):
AAAAATCGAACGTTTGATC
Found at i:81933145 original size:22 final size:22
Alignment explanation
Indices: 81933117--81933192 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
81933107 ACATGTATAT
81933117 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* *
81933139 ATGTGATGAATG-TGAACAT-G-CA
1 ATGTGAT-AAGGCCG-A-ATGGCCA
81933161 TATGTGTGATAAGGCCGAATGGCCA
1 -A--TGTGATAAGGCCGAATGGCCA
81933186 ATGTGAT
1 ATGTGAT
81933193 GAATATGAAC
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 16 0.39
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:81933239 original size:22 final size:22
Alignment explanation
Indices: 81933211--81933332 Score: 70
Period size: 22 Copynumber: 5.3 Consensus size: 22
81933201 ACATGCATAT
81933211 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
81933233 ATGTGATGAATG-TGAACATGTATA
1 ATGTGAT-AAGGCCG-A-ATGGCCA
81933257 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* * *
81933280 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
81933304 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
81933327 ATGTGA
1 ATGTGA
81933333 AGAATATGAA
Statistics
Matches: 72, Mismatches: 16, Indels: 24
0.64 0.14 0.21
Matches are distributed among these distances:
22 22 0.31
23 17 0.24
24 17 0.24
25 16 0.22
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:81933464 original size:47 final size:47
Alignment explanation
Indices: 81932935--81933430 Score: 785
Period size: 47 Copynumber: 10.6 Consensus size: 47
81932925 ATACATGAGC
* * * *
81932935 TAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATTTGTGTGC
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* * * *
81932982 TAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATTTTTGTGC
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* * * *
81933029 TAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATTTGTGTGG
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* *
81933076 TAAGACCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
*
81933123 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
*
81933170 TAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
*
81933217 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
81933264 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* *
81933311 TAAGGCCGAATGGCCAATGTGAAGAATATGAACATGCATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
* * *
81933358 TGAGGCCGAATGGCCAATGTGATAAATGTGAACATGCATACATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
*
81933405 TAAGGCAGAATGGCCAATGTGATGAA
1 TAAGGCCGAATGGCCAATGTGATGAA
81933431 CGTGGATGTG
Statistics
Matches: 422, Mismatches: 27, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 422 1.00
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGA
Found at i:81933497 original size:46 final size:46
Alignment explanation
Indices: 81933444--81933534 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
81933434 GGATGTGTAT
* * *
81933444 ATATGTGGGAAAGCCGAATGGTTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
* * *
81933490 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATG
81933535 TGTATATATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.34, C:0.07, G:0.32, T:0.27
Consensus pattern (46 bp):
ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
Found at i:81935799 original size:49 final size:50
Alignment explanation
Indices: 81935719--81935964 Score: 316
Period size: 49 Copynumber: 4.9 Consensus size: 50
81935709 AGCTATTGTG
*
81935719 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
81935769 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * ** *
81935819 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
81935869 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
81935919 -GGTCGCATGTGTAGTACTAAGTACAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
81935965 GCTTCGGCTT
Statistics
Matches: 168, Mismatches: 26, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
49 82 0.49
50 48 0.29
51 38 0.23
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:81938744 original size:16 final size:15
Alignment explanation
Indices: 81938706--81938744 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
81938696 TGGATTCTCG
*
81938706 TATCATGGATTTCTT
1 TATCTTGGATTTCTT
81938721 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
81938736 TATTCTTGG
1 TA-TCTTGG
81938745 CTTCTCTGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.15, C:0.13, G:0.15, T:0.56
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:81941575 original size:49 final size:49
Alignment explanation
Indices: 81941496--81941740 Score: 319
Period size: 49 Copynumber: 4.9 Consensus size: 49
81941486 GCTATTGTGA
* *
81941496 GGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
81941545 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA--TT
** * * **
81941596 AATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
81941645 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
81941695 GGTCACATGTGTAGTACTAAGTACAGGCTACTATGCGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
81941741 GCTTCGGCTA
Statistics
Matches: 168, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
49 85 0.51
50 44 0.26
51 39 0.23
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:81941632 original size:28 final size:28
Alignment explanation
Indices: 81941600--81941683 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
81941590 AACTTTAATC
81941600 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
81941628 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
81941650 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
81941678 ACGTGT
1 ACGTGT
81941684 ACCAGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:81947418 original size:39 final size:39
Alignment explanation
Indices: 81947364--81947620 Score: 390
Period size: 39 Copynumber: 6.5 Consensus size: 39
81947354 TAATGGAGAA
*
81947364 TTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
81947403 TTATATCCGGGCTAAGTCCCAAAGGCATTCATGCTGGTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
81947442 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTAGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
81947481 TTATATCCGGGCTAAGTTCGGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
81947520 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
81947559 TTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
81947598 TTATATCCGGGCTTAAAGTCCCG
1 TTATATCCGGGC-T-AAGTCCCG
81947621 CATGCTTTGT
Statistics
Matches: 200, Mismatches: 16, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
39 178 0.89
40 22 0.11
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.29
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:81958012 original size:47 final size:45
Alignment explanation
Indices: 81957948--81958113 Score: 165
Period size: 47 Copynumber: 3.6 Consensus size: 45
81957938 ATGATAGCCC
* *
81957948 GTGTAAGACCACGTCTGGGACATGGCATCGGTGTAGAGGTAAGTGCCA
1 GTGTAAGA-CATGTCTGGGACAT-GCATCGG-CTAGAGGTAAGTGCCA
* * *
81957996 GTGTAAGACATGTCTGGGACATGCATCGGCCTCGATG-ATGTTAGCCA
1 GTGTAAGACATGTCTGGGACATGCATCGG-CTAGAGGTAAG-T-GCCA
* * ** **
81958043 GTGTAAGACGTGTCTGGGACATGCATCGGCTA-AGTTTCGTGCTT
1 GTGTAAGACATGTCTGGGACATGCATCGGCTAGAGGTAAGTGCCA
81958087 GTGTAAGACATGTCTGGGACATGCATC
1 GTGTAAGACATGTCTGGGACATGCATC
81958114 AGCACGTATA
Statistics
Matches: 100, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
44 28 0.28
45 4 0.04
46 15 0.15
47 45 0.45
48 8 0.08
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.26
Consensus pattern (45 bp):
GTGTAAGACATGTCTGGGACATGCATCGGCTAGAGGTAAGTGCCA
Found at i:81958058 original size:94 final size:93
Alignment explanation
Indices: 81957861--81958161 Score: 286
Period size: 94 Copynumber: 3.2 Consensus size: 93
81957851 GGGGTGTTAC
* * * * ** *
81957861 ACCATGTCTGGGACATGGCTTCGGCATTGAGATGAGGGCTAGTGTAAGATGTGTCTAGGACATGC
1 ACCATGTCTGGGACATGGCATCGG-ATAGAGATAAGTGCTAGTGTAAGACATGTCTGGGACATGC
*
81957926 ATCAGTCGCATCATGATAGCCCGTGTAAG
65 ATCAGTCGCATCATGATAGCCAGTGTAAG
* * * *
81957955 ACCACGTCTGGGACATGGCATCGGTGTAGAGGTAAGTGCCAGTGTAAGACATGTCTGGGACATGC
1 ACCATGTCTGGGACATGGCATCGG-ATAGAGATAAGTGCTAGTGTAAGACATGTCTGGGACATGC
* * *
81958020 ATCGGCCTCG-ATGATGTTAGCCAGTGTAAG
65 ATCAG--TCGCATCATGATAGCCAGTGTAAG
* * * ** *
81958050 A-CGTGTCTGGGACAT-GCATCGGCTA-AGTTTCGTGCTTGTGTAAGACATGTCTGGGACATGCA
1 ACCATGTCTGGGACATGGCATCGGATAGAGATAAGTGCTAGTGTAAGACATGTCTGGGACATGCA
* * * * *
81958112 TCAGCACGTATACACGAGAGCTAGTGTAAG
66 TCAG-TCGCAT-CATGATAGCCAGTGTAAG
81958142 ACCATGTCTGGGACATGGCA
1 ACCATGTCTGGGACATGGCA
81958162 GCGGCAACTT
Statistics
Matches: 169, Mismatches: 32, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
90 3 0.02
91 37 0.22
92 16 0.09
93 20 0.12
94 72 0.43
95 18 0.11
96 3 0.02
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.25
Consensus pattern (93 bp):
ACCATGTCTGGGACATGGCATCGGATAGAGATAAGTGCTAGTGTAAGACATGTCTGGGACATGCA
TCAGTCGCATCATGATAGCCAGTGTAAG
Found at i:81961437 original size:55 final size:54
Alignment explanation
Indices: 81961322--81961438 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 54
81961312 CTTAAATTTT
* * * *
81961322 TAAA-TCAGTATTGTCCACGGTTAGGCCACACGGGCGTATGCCATAGCCGTGTC
1 TAAAGTCAATATTGCCCACGGGTAGGCCACACGGGCGTATGCCATAGCCGTGCC
* * * *
81961375 TATAAGTCAATATTGCCCACGGGTAGGCCACACGGGCGTGTGTCATGGTCGTGCCC
1 TA-AAGTCAATATTGCCCACGGGTAGGCCACACGGGCGTATGCCATAGCCGTG-CC
81961431 TAAAGTCA
1 TAAAGTCA
81961439 GTGTCGCACA
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
53 2 0.04
54 2 0.04
55 46 0.87
56 3 0.06
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24
Consensus pattern (54 bp):
TAAAGTCAATATTGCCCACGGGTAGGCCACACGGGCGTATGCCATAGCCGTGCC
Found at i:81961451 original size:55 final size:55
Alignment explanation
Indices: 81961337--81961452 Score: 126
Period size: 55 Copynumber: 2.1 Consensus size: 55
81961327 CAGTATTGTC
* * * *
81961337 CACGGTTAGGCCACACGGGCGTATGCCATAGCCGTGTCTATAAGTCAATATTGCC
1 CACGGGTAGGCCACACGGGCGTATGCCATAGCCGTGCCTATAAGTCAATATCGCA
* * * * * *
81961392 CACGGGTAGGCCACACGGGCGTGTGTCATGGTCGTGCCCTA-AAGTCAGTGTCGCA
1 CACGGGTAGGCCACACGGGCGTATGCCATAGCCGTG-CCTATAAGTCAATATCGCA
81961447 CACGGG
1 CACGGG
81961453 CTGAGAAAGT
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
55 47 0.94
56 3 0.06
ACGTcount: A:0.21, C:0.28, G:0.31, T:0.21
Consensus pattern (55 bp):
CACGGGTAGGCCACACGGGCGTATGCCATAGCCGTGCCTATAAGTCAATATCGCA
Found at i:81969831 original size:17 final size:17
Alignment explanation
Indices: 81969801--81969834 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
81969791 ATCCAATCAT
**
81969801 ATATATATTCATATAAA
1 ATATATATAAATATAAA
81969818 ATATATATAAATATAAA
1 ATATATATAAATATAAA
81969835 TAATTATTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (17 bp):
ATATATATAAATATAAA
Found at i:81970376 original size:43 final size:43
Alignment explanation
Indices: 81970295--81970378 Score: 100
Period size: 43 Copynumber: 2.0 Consensus size: 43
81970285 AAGTCGTACA
* **
81970295 ATGCCAACGTCCCAGACATGGTCTTACATGTAGTCACATATTG
1 ATGCCAACGTCCCAGACAGGGTCTTACATGTAAACACATATTG
*
81970338 ATGCC-ACTGTCCCAGATAGGGTCTTAC-TCGTAAACACATAT
1 ATGCCAAC-GTCCCAGACAGGGTCTTACAT-GTAAACACATAT
81970379 CGTAATCACA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
42 3 0.09
43 32 0.91
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAGGGTCTTACATGTAAACACATATTG
Found at i:81972437 original size:48 final size:46
Alignment explanation
Indices: 81972371--81972494 Score: 144
Period size: 45 Copynumber: 2.7 Consensus size: 46
81972361 GTCGAGGCTG
*****
81972371 TGTCCAACATGGTCTTACACTGGCTCTCATATGGTGGCCAACGCCA
1 TGTCCAACATGGTCTTACACTGGCTCTCATATCAACACCAACGCCA
* *
81972417 TGTCCCAGACATGGTCTTACACTGGCT-TACA-ATCAACACCGATGCCA
1 TGT-CCA-ACATGGTCTTACACTGGCTCT-CATATCAACACCAACGCCA
81972464 TGTCCAACATGGTCTTACACTGGCTCTCATA
1 TGTCCAACATGGTCTTACACTGGCTCTCATA
81972495 ACATAGCCGA
Statistics
Matches: 66, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
45 21 0.32
46 8 0.12
47 16 0.24
48 21 0.32
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.27
Consensus pattern (46 bp):
TGTCCAACATGGTCTTACACTGGCTCTCATATCAACACCAACGCCA
Found at i:81972522 original size:93 final size:94
Alignment explanation
Indices: 81972371--81972585 Score: 249
Period size: 93 Copynumber: 2.3 Consensus size: 94
81972361 GTCGAGGCTG
*** * * *
81972371 TGTCCAACATGGTCTTACACTGGCTCTCATATGGTGGCCAACGCCATGTCCCAGACATGGTCTTA
1 TGTCCAACATGGTCTTACACTGGCTCTCATAACATAGCCAACGCCATCTCCCAAACATGGTCTTA
81972436 CACTGGC-T-T-ACAAT-CAACACCGATGCCA
66 CACTGGCATATGA-AATGC-A-ACCGATGCCA
* * * *
81972464 TGTCCAACATGGTCTTACACTGGCTCTCATAACATAGCCGATGTCATCTTCCAAACATGGTCTTA
1 TGTCCAACATGGTCTTACACTGGCTCTCATAACATAGCCAACGCCATCTCCCAAACATGGTCTTA
*
81972529 CACTGGCATATGAAATGCAGCCGATGCCA
66 CACTGGCATATGAAATGCAACCGATGCCA
*
81972558 TGTCCCAAACATGGTCTTACACTAGCTC
1 TGT-CC-AACATGGTCTTACACTGGCTC
81972586 ACACATCACC
Statistics
Matches: 104, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
93 62 0.60
94 13 0.12
95 7 0.07
96 22 0.21
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (94 bp):
TGTCCAACATGGTCTTACACTGGCTCTCATAACATAGCCAACGCCATCTCCCAAACATGGTCTTA
CACTGGCATATGAAATGCAACCGATGCCA
Found at i:81972533 original size:48 final size:49
Alignment explanation
Indices: 81972313--81972585 Score: 198
Period size: 48 Copynumber: 5.8 Consensus size: 49
81972303 TGCAAGCGAG
* * * * *
81972313 GCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCGTC-TCA-A
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATCAACATA
* * ** *** *
81972360 TGTCGAGGCTGTGT-CC-AACATGGTCTTACACTGGCTCTCAT-ATGGTG
1 -GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATCAACATA
* * *
81972407 GCCAACGCCATGTCCCAGACATGGTCTTACACTGGCT-TACAATCAAC--A
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCT-C-ATCAACATA
81972455 -CCGATGCCATGT-CC-AACATGGTCTTACACTGGCTCTCAT-AACATA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATCAACATA
* * * * *
81972500 GCCGATGTCATCTTCCAAACATGGTCTTACACTGGC-AT-ATGAA-ATGCA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATCAACAT--A
*
81972548 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTC
81972586 ACACATCACC
Statistics
Matches: 177, Mismatches: 31, Indels: 33
0.73 0.13 0.14
Matches are distributed among these distances:
43 3 0.02
44 2 0.01
45 21 0.12
46 48 0.27
47 19 0.11
48 81 0.46
49 2 0.01
50 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATCAACATA
Found at i:81973241 original size:72 final size:72
Alignment explanation
Indices: 81973124--81973266 Score: 277
Period size: 72 Copynumber: 2.0 Consensus size: 72
81973114 GACTTTCGAA
*
81973124 ATTTACTATTTTTCCCCTAGGCTCGTAAAACGATTTTTATCAAATTTTCTCACTAGCCAAGCCTC
1 ATTTACTATTTTTCCCCTAGGCTCGTAAAACAATTTTTATCAAATTTTCTCACTAGCCAAGCCTC
81973189 GCAAAAG
66 GCAAAAG
81973196 ATTTACTATTTTTCCCCTAGGCTCGTAAAACAATTTTTATCAAATTTTCTCACTAGCCAAGCCTC
1 ATTTACTATTTTTCCCCTAGGCTCGTAAAACAATTTTTATCAAATTTTCTCACTAGCCAAGCCTC
81973261 GCAAAA
66 GCAAAA
81973267 TTCTTTTTAT
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 70 1.00
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (72 bp):
ATTTACTATTTTTCCCCTAGGCTCGTAAAACAATTTTTATCAAATTTTCTCACTAGCCAAGCCTC
GCAAAAG
Found at i:81973243 original size:36 final size:36
Alignment explanation
Indices: 81973131--81973243 Score: 101
Period size: 36 Copynumber: 3.1 Consensus size: 36
81973121 GAAATTTACT
81973131 ATTTTTCCCCTAGGCTCGTAAAACGATTTTTATCAA
1 ATTTTTCCCCTAGGCTCGTAAAACGATTTTTATCAA
* * * *
81973167 ATTTTCTCACTAGCCAAGCCTCGCAAAA-GA--TTTA-C-T
1 ATTTT-TC-C---CCTAGGCTCGTAAAACGATTTTTATCAA
*
81973203 ATTTTTCCCCTAGGCTCGTAAAACAATTTTTATCAA
1 ATTTTTCCCCTAGGCTCGTAAAACGATTTTTATCAA
81973239 ATTTT
1 ATTTT
81973244 CTCACTAGCC
Statistics
Matches: 58, Mismatches: 9, Indels: 20
0.67 0.10 0.23
Matches are distributed among these distances:
31 12 0.21
32 1 0.02
34 5 0.09
35 3 0.05
36 15 0.26
37 3 0.05
38 5 0.09
40 2 0.03
41 12 0.21
ACGTcount: A:0.29, C:0.23, G:0.10, T:0.38
Consensus pattern (36 bp):
ATTTTTCCCCTAGGCTCGTAAAACGATTTTTATCAA
Found at i:81984476 original size:34 final size:33
Alignment explanation
Indices: 81984429--81984510 Score: 87
Period size: 33 Copynumber: 2.5 Consensus size: 33
81984419 ATTAATATAA
* * *
81984429 TTTATTATT-ATAATAAATTATTTAATATTACAAT
1 TTTATT-TTAATAATAAA-TATTAAAAATAACAAT
*
81984463 TTTATTTTAATAATAAATATTAAAAATAATAAT
1 TTTATTTTAATAATAAATATTAAAAATAACAAT
81984496 TTTAATTTTAA-AATA
1 TTT-ATTTTAATAATA
81984511 CTATTCCTGG
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
33 21 0.50
34 21 0.50
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (33 bp):
TTTATTTTAATAATAAATATTAAAAATAACAAT
Found at i:81984621 original size:17 final size:16
Alignment explanation
Indices: 81984592--81984628 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
81984582 TAAATGTTCT
81984592 ATATTATAAAATATAA
1 ATATTATAAAATATAA
*
81984608 ATATTTTAATAATATAA
1 ATATTATAA-AATATAA
81984625 ATAT
1 ATAT
81984629 GAGTATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
ATATTATAAAATATAA
Found at i:81984881 original size:21 final size:23
Alignment explanation
Indices: 81984847--81984890 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
81984837 TGATAATATG
81984847 TTTTGATATAAAAAATTAAAGTT
1 TTTTGATATAAAAAATTAAAGTT
*
81984870 TTTTGA-AT-AAAAGTTAAAGTT
1 TTTTGATATAAAAAATTAAAGTT
81984891 GAACAAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 12 0.60
22 2 0.10
23 6 0.30
ACGTcount: A:0.45, C:0.00, G:0.11, T:0.43
Consensus pattern (23 bp):
TTTTGATATAAAAAATTAAAGTT
Found at i:81986890 original size:18 final size:18
Alignment explanation
Indices: 81986869--81986905 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
81986859 AAAGAACAGA
81986869 TAAAATATTATGTGTTTT
1 TAAAATATTATGTGTTTT
81986887 TAAAATATTATGTGTTTT
1 TAAAATATTATGTGTTTT
81986905 T
1 T
81986906 CTATCCACAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (18 bp):
TAAAATATTATGTGTTTT
Found at i:81991310 original size:29 final size:29
Alignment explanation
Indices: 81991235--81991323 Score: 110
Period size: 28 Copynumber: 3.1 Consensus size: 29
81991225 CATCTCATTC
* ** *
81991235 ATATGGCCCATTAGGCCCAATTCATATTC
1 ATATGGCCCATTAGGCCCAAATCACCTTT
*
81991264 ACAT-GCCCATTAGGCCCAAATCACCTTT
1 ATATGGCCCATTAGGCCCAAATCACCTTT
*
81991292 ATATGGCCCGTTAGGCCCAAATCACC-TT
1 ATATGGCCCATTAGGCCCAAATCACCTTT
81991320 ATAT
1 ATAT
81991324 TCATGCTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
28 29 0.56
29 23 0.44
ACGTcount: A:0.28, C:0.30, G:0.13, T:0.28
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACCTTT
Found at i:81991562 original size:16 final size:16
Alignment explanation
Indices: 81991541--81991577 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
81991531 AAACTTTCGG
81991541 CTTTTCGACATTTTGA
1 CTTTTCGACATTTTGA
* *
81991557 CTTTTCGGCATTTTGG
1 CTTTTCGACATTTTGA
81991573 CTTTT
1 CTTTT
81991578 TGGCTTTTGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.11, C:0.19, G:0.16, T:0.54
Consensus pattern (16 bp):
CTTTTCGACATTTTGA
Found at i:81999722 original size:20 final size:20
Alignment explanation
Indices: 81999694--81999732 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
81999684 AATGAGTTGA
81999694 AAATAAGCTCG-GTTGAGCTC
1 AAATAAGCT-GAGTTGAGCTC
*
81999714 AAATGAGCTGAGTTGAGCT
1 AAATAAGCTGAGTTGAGCT
81999733 GGACGGAGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (20 bp):
AAATAAGCTGAGTTGAGCTC
Found at i:82007067 original size:12 final size:12
Alignment explanation
Indices: 82007050--82007074 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
82007040 TATGTCCGTA
82007050 TGCTAGGCCATG
1 TGCTAGGCCATG
82007062 TGCTAGGCCATG
1 TGCTAGGCCATG
82007074 T
1 T
82007075 AATTGCTTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.32, T:0.28
Consensus pattern (12 bp):
TGCTAGGCCATG
Found at i:82009486 original size:29 final size:28
Alignment explanation
Indices: 82009453--82009644 Score: 95
Period size: 29 Copynumber: 6.5 Consensus size: 28
82009443 AAATGAATCT
82009453 TTTTAATAGAGATAGCCACAAAGGCATTCC
1 TTTTAATAGAGATA-CCACAAAGGC-TTCC
* *
82009483 TTTAACATTA-AGTACTTACCACAAAGGCTTTC
1 TTTTA-A-TAGAG-A--TACCACAAAGGCTTCC
* *
82009515 TCTT--TAGAGTATTGCCACAAAGGCATTCC
1 TTTTAATAGAG-A-TACCACAAAGGC-TTCC
* *
82009544 TTTTAAAAGAGATTACTACAAAGGCTT-C
1 TTTTAATAGAGA-TACCACAAAGGCTTCC
* * * *
82009572 TATTTAGTAGAGATTACAATAAAGTCTTCC
1 T-TTTAATAGAGA-TACCACAAAGGCTTCC
* * * *
82009602 ATTTAATAGATATAGCCAGAAATGCTTCC
1 TTTTAATAGAGATA-CCACAAAGGCTTCC
*
82009631 TTTTAACAGAGATA
1 TTTTAATAGAGATA
82009645 AATCTATATG
Statistics
Matches: 125, Mismatches: 25, Indels: 25
0.71 0.14 0.14
Matches are distributed among these distances:
28 18 0.14
29 63 0.50
30 17 0.14
31 7 0.06
32 8 0.06
33 10 0.08
34 2 0.02
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (28 bp):
TTTTAATAGAGATACCACAAAGGCTTCC
Found at i:82014769 original size:16 final size:16
Alignment explanation
Indices: 82014748--82014779 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
82014738 TTAGTTCTCT
*
82014748 CTTTAATCGATAACTA
1 CTTTAACCGATAACTA
82014764 CTTTAACCGATAACTA
1 CTTTAACCGATAACTA
82014780 TGTGTTTTCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.22, G:0.06, T:0.34
Consensus pattern (16 bp):
CTTTAACCGATAACTA
Found at i:82016629 original size:28 final size:28
Alignment explanation
Indices: 82016576--82016629 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
82016566 CGATTAGTTC
* *
82016576 TTGCAGACTCTTGCTTGAAGAGTAGTCA
1 TTGCAGACTCTTGCTTGAAAAATAGTCA
*
82016604 TTGCAGACTCTTTCTTGAAAAATAGT
1 TTGCAGACTCTTGCTTGAAAAATAGT
82016630 GTAATAACCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (28 bp):
TTGCAGACTCTTGCTTGAAAAATAGTCA
Found at i:82021126 original size:56 final size:49
Alignment explanation
Indices: 82020916--82021101 Score: 188
Period size: 46 Copynumber: 3.9 Consensus size: 49
82020906 GACCACATTT
**
82020916 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTG-ATA--
1 TGAGAGCTAGTGTAAGA-CATGTCTAAGACATGGCATCGGCA-TGAATATG
* ** * * *
82020964 TGAGAGCTAGTGTTAGACATGTCTGGGACAT-GCATCAGCCTCG-AGATG
1 TGAGAGCTAGTGTAAGACATGTCTAAGACATGGCATCGGCAT-GAATATG
* *
82021012 T-A-AGCCAATGTAAGACATGTCTAAGACATGGCATCGGCATGAATATG
1 TGAGAGCTAGTGTAAGACATGTCTAAGACATGGCATCGGCATGAATATG
*
82021059 TGAGAGCTAGTGTAAGATCATGTCTGAGACATGGCATCGGCAT
1 TGAGAGCTAGTGTAAGA-CATGTCTAAGACATGGCATCGGCAT
82021102 TATATCCTAT
Statistics
Matches: 115, Mismatches: 15, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
45 1 0.01
46 33 0.29
47 28 0.24
48 18 0.16
49 11 0.10
50 24 0.21
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (49 bp):
TGAGAGCTAGTGTAAGACATGTCTAAGACATGGCATCGGCATGAATATG
Found at i:82022949 original size:45 final size:45
Alignment explanation
Indices: 82022871--82022956 Score: 109
Period size: 45 Copynumber: 1.9 Consensus size: 45
82022861 CCGATATCAG
* ** *
82022871 TTCACCGGCATTATAGCCTACTAGGCTTGAAGGCCTGAATAGTAT
1 TTCACCGGCATTATAGCCTACTAAGCTCAAAGGCCCGAATAGTAT
** *
82022916 TTCACCGGCATTATAGTTTGCTAAGCTCAAAGGCCCGAATA
1 TTCACCGGCATTATAGCCTACTAAGCTCAAAGGCCCGAATA
82022957 ATCAAGTCAA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 34 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (45 bp):
TTCACCGGCATTATAGCCTACTAAGCTCAAAGGCCCGAATAGTAT
Found at i:82023336 original size:43 final size:43
Alignment explanation
Indices: 82023286--82023440 Score: 238
Period size: 43 Copynumber: 3.6 Consensus size: 43
82023276 CCGGCATTAC
*
82023286 GCCTGCTAGGCACGAAGGCCCAAATACACATCACCGACACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAA
* * *
82023329 GCTTGCTAGGCACGAAGGCCCGAATACACATAACCAACACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAA
* * * *
82023372 GCCTACTAGGCACGAAGGCCCGAATACACATCACTGGCACTAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAA
82023415 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
82023441 TAATACCAGC
Statistics
Matches: 100, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 100 1.00
ACGTcount: A:0.34, C:0.32, G:0.23, T:0.12
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAA
Found at i:82023487 original size:38 final size:38
Alignment explanation
Indices: 82023433--82023516 Score: 132
Period size: 38 Copynumber: 2.2 Consensus size: 38
82023423 GGCACGAAGG
* * *
82023433 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
82023471 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
82023509 CCCGAATA
1 CCCGAATA
82023517 CACCTCAAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.20
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:82026245 original size:20 final size:20
Alignment explanation
Indices: 82026207--82026245 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
82026197 TTTGTTCTTC
*
82026207 TTTTCTTATTTCAATTAATA
1 TTTTCTTATTTCAAATAATA
82026227 TTTT-TTATTTCAAAATAAT
1 TTTTCTTATTTC-AAATAAT
82026246 GCAAATTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.59
Consensus pattern (20 bp):
TTTTCTTATTTCAAATAATA
Found at i:82029433 original size:35 final size:35
Alignment explanation
Indices: 82029394--82029460 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
82029384 ATCTCATATG
*
82029394 GCCGAATATACAAATTCAATATAACCTCACATGTA
1 GCCGAATATACAAATTCAATAGAACCTCACATGTA
*
82029429 GCCGAATATACAAGTTCAATAGAACCTCACAT
1 GCCGAATATACAAATTCAATAGAACCTCACAT
82029461 ATACTTACCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.42, C:0.24, G:0.10, T:0.24
Consensus pattern (35 bp):
GCCGAATATACAAATTCAATAGAACCTCACATGTA
Found at i:82029443 original size:70 final size:70
Alignment explanation
Indices: 82029317--82029447 Score: 163
Period size: 70 Copynumber: 1.9 Consensus size: 70
82029307 TTATATTATT
* * * * * * *
82029317 TCATATGGCCGAATATATAAGTCCAATATATCATCAAATGTAATCTAATGTTCAAGTTCAAATAA
1 TCATATGGCCGAATATACAAATCCAATATAACATCAAATGTAACCGAATATACAAGTTCAAATAA
82029382 ACATC
66 ACATC
* * * *
82029387 TCATATGGCCGAATATACAAATTCAATATAACCTCACATGTAGCCGAATATACAAGTTCAA
1 TCATATGGCCGAATATACAAATCCAATATAACATCAAATGTAACCGAATATACAAGTTCAA
82029448 TAGAACCTCA
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
70 50 1.00
ACGTcount: A:0.41, C:0.19, G:0.11, T:0.29
Consensus pattern (70 bp):
TCATATGGCCGAATATACAAATCCAATATAACATCAAATGTAACCGAATATACAAGTTCAAATAA
ACATC
Found at i:82029462 original size:70 final size:70
Alignment explanation
Indices: 82029318--82029462 Score: 157
Period size: 70 Copynumber: 2.1 Consensus size: 70
82029308 TATATTATTT
* * * * * * *
82029318 CATATGGCCGAATATATAAGTCCAATATATCATCAAATGTAATCTAATGTTCAAGTTCAAATAAA
1 CATATGGCCGAATATACAAATCCAATATAACATCAAATGTAACCGAATATACAAGTTCAAATAAA
*
82029383 CATCT
66 CATCA
* * * *
82029388 CATATGGCCGAATATACAAATTCAATATAACCTCACATGTAGCCGAATATACAAGTTC-AATAGA
1 CATATGGCCGAATATACAAATCCAATATAACATCAAATGTAACCGAATATACAAGTTCAAATA-A
*
82029452 ACCTCA
65 ACATCA
82029458 CATAT
1 CATAT
82029463 ACTTACCTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
69 4 0.07
70 57 0.93
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.28
Consensus pattern (70 bp):
CATATGGCCGAATATACAAATCCAATATAACATCAAATGTAACCGAATATACAAGTTCAAATAAA
CATCA
Found at i:82034959 original size:23 final size:23
Alignment explanation
Indices: 82034912--82034959 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
82034902 CTTCCTTTGC
* **
82034912 TTGCTCTTCTTCTTTCCTATGAA
1 TTGCTCTTCTTCTTTCATACCAA
*
82034935 TTGCTCTTCTTCTTTGATACCAA
1 TTGCTCTTCTTCTTTCATACCAA
82034958 TT
1 TT
82034960 CAATACCAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.15, C:0.25, G:0.08, T:0.52
Consensus pattern (23 bp):
TTGCTCTTCTTCTTTCATACCAA
Found at i:82038353 original size:53 final size:53
Alignment explanation
Indices: 82038253--82038354 Score: 141
Period size: 53 Copynumber: 1.9 Consensus size: 53
82038243 TTCCTTTTTA
* * * * *
82038253 AACTTACCATTTCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATG
1 AACTCACCATTTCCATGCCTTGACATGGTCTTACATGGGATACTTGCCTTATG
* *
82038306 AACTCACCATTTCCATGCCTTGGCATGGTCTTACATGGGATATTTGCCT
1 AACTCACCATTTCCATGCCTTGACATGGTCTTACATGGGATACTTGCCT
82038355 AATAGTAGTT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
53 42 1.00
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.37
Consensus pattern (53 bp):
AACTCACCATTTCCATGCCTTGACATGGTCTTACATGGGATACTTGCCTTATG
Found at i:82039253 original size:31 final size:31
Alignment explanation
Indices: 82039210--82039293 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
82039200 TTAGTCTTGA
82039210 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
*
82039240 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
*
82039271 CATATCACTGGGCCAAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
82039294 ACTGTAAACG
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 5 0.10
31 46 0.90
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTCCATAAAT
Found at i:82039364 original size:42 final size:42
Alignment explanation
Indices: 82039317--82039450 Score: 243
Period size: 42 Copynumber: 3.2 Consensus size: 42
82039307 TGGCCCTTAG
82039317 GCCCATTTCAATATCACATGTAATGTCAA-GAGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGA-ATGTATGCAA
*
82039359 GCCCATTTCAAAATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
82039401 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
82039443 GCCCATTT
1 GCCCATTT
82039451 GGGGAGACTA
Statistics
Matches: 89, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
42 87 0.98
43 2 0.02
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:82039626 original size:25 final size:25
Alignment explanation
Indices: 82039598--82039663 Score: 96
Period size: 25 Copynumber: 2.6 Consensus size: 25
82039588 CTCTTTTAAT
82039598 AACTGGGGCAAAGCCCTTTCCGATA
1 AACTGGGGCAAAGCCCTTTCCGATA
* * *
82039623 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTCCGATA
*
82039648 AACTGGGGCAGAGCCC
1 AACTGGGGCAAAGCCC
82039664 CTTTAGCACT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.18
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTCCGATA
Found at i:82040622 original size:27 final size:27
Alignment explanation
Indices: 82040592--82040643 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
82040582 GTAAATCTAC
82040592 AAACCAAGGGTATTTCAATAATTTTGT
1 AAACCAAGGGTATTTCAATAATTTTGT
* *
82040619 AAACCAATGGTATTTCTATAATTTT
1 AAACCAAGGGTATTTCAATAATTTT
82040644 TAGAAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAATAATTTTGT
Found at i:82040695 original size:27 final size:27
Alignment explanation
Indices: 82040653--82040777 Score: 92
Period size: 27 Copynumber: 4.6 Consensus size: 27
82040643 TTAGAAAGTC
* **
82040653 AAGGGTATTTTTGTAATGTTGTAAATT
1 AAGGGTATTTTGGTAATGTTACAAATT
* *
82040680 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTTGGTAATGTTACAAATT
* * *
82040707 AAGGGTATTTCGGT-ATTTTCACAAA-C
1 AAGGGTATTTTGGTAATGTT-ACAAATT
* ** * *
82040733 CAGTGGTATTTCAGTAATTTTACAAACT
1 AAG-GGTATTTTGGTAATGTTACAAATT
*
82040761 AGGGGTATTTTGGTAAT
1 AAGGGTATTTTGGTAAT
82040778 TTTATCCTAC
Statistics
Matches: 79, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
26 7 0.09
27 66 0.84
28 6 0.08
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.42
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATGTTACAAATT
Found at i:82040778 original size:27 final size:27
Alignment explanation
Indices: 82040679--82040807 Score: 136
Period size: 27 Copynumber: 4.8 Consensus size: 27
82040669 TGTTGTAAAT
* *
82040679 TAGGGGTATTTTGGTAATTTTACAAAT
1 TAGGGGTATTTCGGTAATTTTACAAAC
*
82040706 TAAGGGTATTTCGGT-ATTTTCACAAAC
1 TAGGGGTATTTCGGTAATTTT-ACAAAC
* * *
82040733 CAGTGGTATTTCAGTAATTTTACAAAC
1 TAGGGGTATTTCGGTAATTTTACAAAC
* **
82040760 TAGGGGTATTTTGGTAATTTTATCCTAC
1 TAGGGGTATTTCGGTAATTTTA-CAAAC
*
82040788 -AGGGGTATTTCAGTAATTTT
1 TAGGGGTATTTCGGTAATTTT
82040808 GTAATCGAGG
Statistics
Matches: 84, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
26 5 0.06
27 71 0.85
28 8 0.10
ACGTcount: A:0.28, C:0.10, G:0.20, T:0.42
Consensus pattern (27 bp):
TAGGGGTATTTCGGTAATTTTACAAAC
Found at i:82040795 original size:54 final size:54
Alignment explanation
Indices: 82040680--82040807 Score: 152
Period size: 54 Copynumber: 2.4 Consensus size: 54
82040670 GTTGTAAATT
** *
82040680 AGGGGTATTTTGGTAATTTTACAAATTAAGGGTATTTCGGTATTTTCACAAACC
1 AGGGGTATTTCAGTAATTTTACAAACTAAGGGTATTTCGGTATTTTCACAAACC
* * * **
82040734 AGTGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTT-ATCCTA-C
1 AGGGGTATTTCAGTAATTTTACAAACTAAGGGTATTTCGGT-ATTTTCA-CAAACC
82040788 AGGGGTATTTCAGTAATTTT
1 AGGGGTATTTCAGTAATTTT
82040808 GTAATCGAGG
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
54 56 0.89
55 7 0.11
ACGTcount: A:0.28, C:0.10, G:0.20, T:0.41
Consensus pattern (54 bp):
AGGGGTATTTCAGTAATTTTACAAACTAAGGGTATTTCGGTATTTTCACAAACC
Found at i:82040818 original size:27 final size:26
Alignment explanation
Indices: 82040737--82040818 Score: 74
Period size: 27 Copynumber: 3.0 Consensus size: 26
82040727 ACAAACCAGT
* *
82040737 GGTATTTCAGTAATTTTACAAACTAGG
1 GGTATTTCAGTAATTTTATAATC-AGG
** **
82040764 GGTATTTTGGTAATTTTATCCTACAGG
1 GGTATTTCAGTAATTTTATAAT-CAGG
*
82040791 GGTATTTCAGTAATTTTGTAATCGAGG
1 GGTATTTCAGTAATTTTATAATC-AGG
82040818 G
1 G
82040819 TAAAACGGTA
Statistics
Matches: 42, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
26 1 0.02
27 40 0.95
28 1 0.02
ACGTcount: A:0.27, C:0.10, G:0.23, T:0.40
Consensus pattern (26 bp):
GGTATTTCAGTAATTTTATAATCAGG
Found at i:82040829 original size:26 final size:26
Alignment explanation
Indices: 82040800--82040879 Score: 115
Period size: 27 Copynumber: 3.0 Consensus size: 26
82040790 GGGTATTTCA
82040800 GTAATTTTGTAATCGAGGGTAAAACG
1 GTAATTTTGTAATCGAGGGTAAAACG
* *
82040826 GTAATTTTGTAAACTGAGGGTAAAATG
1 GTAATTTTGTAATC-GAGGGTAAAACG
*
82040853 GTAATTTTGTAAATCAAGGGTAAAACG
1 GTAATTTTGT-AATCGAGGGTAAAACG
82040880 ATTATTCTAT
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
26 13 0.28
27 31 0.66
28 3 0.06
ACGTcount: A:0.38, C:0.06, G:0.25, T:0.31
Consensus pattern (26 bp):
GTAATTTTGTAATCGAGGGTAAAACG
Found at i:82040914 original size:54 final size:53
Alignment explanation
Indices: 82040800--82040901 Score: 134
Period size: 54 Copynumber: 1.9 Consensus size: 53
82040790 GGGTATTTCA
* * * *
82040800 GTAATTTTGTAATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATG
1 GTAATTTTGTAATCAAGGGTAAAACGATAATTCTATAAACTGAGGGTAAAATG
*
82040853 GTAATTTTGTAAATCAAGGGTAAAACGATTATTCTATAAA-TCGAGGGTA
1 GTAATTTTGT-AATCAAGGGTAAAACGATAATTCTATAAACT-GAGGGTA
82040902 CTTTGGTAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
53 11 0.26
54 31 0.74
ACGTcount: A:0.37, C:0.07, G:0.24, T:0.32
Consensus pattern (53 bp):
GTAATTTTGTAATCAAGGGTAAAACGATAATTCTATAAACTGAGGGTAAAATG
Found at i:82044558 original size:46 final size:47
Alignment explanation
Indices: 82044413--82044670 Score: 194
Period size: 46 Copynumber: 5.5 Consensus size: 47
82044403 TTGTGCGCTT
** *
82044413 GTGTAAGACATGTCTGGGACATGCATCGGCC-ACATTATG-AGAGTCA
1 GTGTAAGACATGTCTGGGACATGCATCGGCCTTGA-TATGTAGAGCCA
* * * * * *
82044459 GTGTAAGACCATGTCTAGAACATGACATCGTCATTGATACG-AGAGCAA
1 GTGTAAGA-CATGTCTGGGACATG-CATCGGCCTTGATATGTAGAGCCA
*
82044507 GTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATGTA-AGCCA
1 GTGTAAGACATGTCTGGGACATGCATCGGCCTTGATATGTAGAGCCA
* * * *
82044553 GTGTAAGACATGTCTGGGACATGCTTTGG-CTACGAGATGT----CTCA
1 GTGTAAGACATGTCTGGGACATGCATCGGCCT-TGATATGTAGAGC-CA
* * *
82044597 GTGTAAGACTATGTATGGGACATTGCATCGG-CATGAATATGTGAGAGCTA
1 GTGTAAGAC-ATGTCTGGGACA-TGCATCGGCCTTG-ATATGT-AGAGCCA
*
82044647 GTGTAATACCATGTCTGGGACATG
1 GTGTAAGA-CATGTCTGGGACATG
82044671 GGATCGGCAT
Statistics
Matches: 169, Mismatches: 28, Indels: 27
0.75 0.12 0.12
Matches are distributed among these distances:
43 1 0.01
44 11 0.07
45 14 0.08
46 70 0.41
47 27 0.16
48 22 0.13
49 3 0.02
50 19 0.11
51 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (47 bp):
GTGTAAGACATGTCTGGGACATGCATCGGCCTTGATATGTAGAGCCA
Found at i:82051230 original size:43 final size:43
Alignment explanation
Indices: 82051145--82051271 Score: 109
Period size: 43 Copynumber: 3.0 Consensus size: 43
82051135 CATACCAATG
* * * **
82051145 CAATATCCCAAATATGATCTTACATGTAATCTTGTATCGATGC
1 CAATAGCCCAAATATGATCTTACAAGAAATCTCATATCGATGC
* * *
82051188 CAATAGCCCAACTATGGTCTTACAAGAAATCTCATATTGATGC
1 CAATAGCCCAAATATGATCTTACAAGAAATCTCATATCGATGC
* *
82051231 CACATA--CCAGATGA-GGTCTTACACA-AAATCTCATATCGATG
1 CA-ATAGCCCAAAT-ATGATCTTACA-AGAAATCTCATATCGATG
82051272 TCATATCCTA
Statistics
Matches: 70, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
42 28 0.40
43 39 0.56
44 3 0.04
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.29
Consensus pattern (43 bp):
CAATAGCCCAAATATGATCTTACAAGAAATCTCATATCGATGC
Found at i:82051260 original size:42 final size:43
Alignment explanation
Indices: 82051200--82051297 Score: 123
Period size: 42 Copynumber: 2.3 Consensus size: 43
82051190 ATAGCCCAAC
*
82051200 TATGGTCTTACA-AGAAATCTCATATTGATGCCACATACC-AGA
1 TATGGTCTTACACAGAAATCTCATATCGATGCCACAT-CCTAGA
* *
82051242 TGA-GGTCTTACACA-AAATCTCATATCGATGTCATATCCTAGA
1 T-ATGGTCTTACACAGAAATCTCATATCGATGCCACATCCTAGA
82051284 TATGGTCTTACACA
1 TATGGTCTTACACA
82051298 TAAACTTAGT
Statistics
Matches: 49, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
41 3 0.06
42 44 0.90
43 2 0.04
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.31
Consensus pattern (43 bp):
TATGGTCTTACACAGAAATCTCATATCGATGCCACATCCTAGA
Found at i:82060221 original size:32 final size:32
Alignment explanation
Indices: 82060180--82060249 Score: 113
Period size: 32 Copynumber: 2.2 Consensus size: 32
82060170 TTTGGTTCAA
* **
82060180 TGTAATGGAATAGGGTTGTAATGGAATAGAAC
1 TGTAATGGAATAGAGTTGTAATAAAATAGAAC
82060212 TGTAATGGAATAGAGTTGTAATAAAATAGAAC
1 TGTAATGGAATAGAGTTGTAATAAAATAGAAC
82060244 TGTAAT
1 TGTAAT
82060250 AGCAATTCAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.41, C:0.03, G:0.26, T:0.30
Consensus pattern (32 bp):
TGTAATGGAATAGAGTTGTAATAAAATAGAAC
Found at i:82060241 original size:16 final size:16
Alignment explanation
Indices: 82060180--82060233 Score: 81
Period size: 16 Copynumber: 3.4 Consensus size: 16
82060170 TTTGGTTCAA
*
82060180 TGTAATGGAATAGGGT
1 TGTAATGGAATAGAGT
**
82060196 TGTAATGGAATAGAAC
1 TGTAATGGAATAGAGT
82060212 TGTAATGGAATAGAGT
1 TGTAATGGAATAGAGT
82060228 TGTAAT
1 TGTAAT
82060234 AAAATAGAAC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.37, C:0.02, G:0.30, T:0.31
Consensus pattern (16 bp):
TGTAATGGAATAGAGT
Found at i:82060247 original size:16 final size:16
Alignment explanation
Indices: 82060204--82060250 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
82060194 GTTGTAATGG
**
82060204 AATAGAACTGTAATGG
1 AATAGAACTGTAATAA
**
82060220 AATAGAGTTGTAATAA
1 AATAGAACTGTAATAA
82060236 AATAGAACTGTAATA
1 AATAGAACTGTAATA
82060251 GCAATTCAAT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.49, C:0.04, G:0.19, T:0.28
Consensus pattern (16 bp):
AATAGAACTGTAATAA
Found at i:82060487 original size:61 final size:61
Alignment explanation
Indices: 82060422--82060574 Score: 168
Period size: 58 Copynumber: 2.5 Consensus size: 61
82060412 TTTAATAGGA
* ** *
82060422 TTATTATTAAATATAATTTAATAAAAACAATAATACATAATTTAATCCTATT-TTAATAAAT
1 TTATTATTAAATATAA-TTAATAAAAATAATAATACATAATTTAATAATATTCTTAATAAAG
* * * *
82060483 TTATTATTAATTATAATT--TAACAATAATAATATATAATTTAATAATATTCTTAATATAG
1 TTATTATTAAATATAATTAATAAAAATAATAATACATAATTTAATAATATTCTTAATAAAG
**
82060542 CAATTATTAAAATATAAATTAATAAAAATAATA
1 TTATTATT-AAATAT-AATTAATAAAAATAATA
82060575 TATAATATTA
Statistics
Matches: 75, Mismatches: 12, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
58 26 0.35
59 13 0.17
60 7 0.09
61 19 0.25
63 10 0.13
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.42
Consensus pattern (61 bp):
TTATTATTAAATATAATTAATAAAAATAATAATACATAATTTAATAATATTCTTAATAAAG
Found at i:82060518 original size:21 final size:20
Alignment explanation
Indices: 82060490--82060529 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
82060480 AATTTATTAT
82060490 TAATTATAATTTAACAATAA
1 TAATTATAATTTAACAATAA
*
82060510 TAATATATAATTTAATAATA
1 TAAT-TATAATTTAACAATA
82060530 TTCTTAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (20 bp):
TAATTATAATTTAACAATAA
Found at i:82060590 original size:22 final size:21
Alignment explanation
Indices: 82060553--82060598 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 21
82060543 AATTATTAAA
82060553 ATATAAATTAATAAAAATAAT
1 ATATAAATTAATAAAAATAAT
82060574 ATATAATATTACA-AAAAATAAT
1 ATATAA-ATTA-ATAAAAATAAT
82060596 ATA
1 ATA
82060599 CAACCTACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 6 0.26
22 16 0.70
23 1 0.04
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (21 bp):
ATATAAATTAATAAAAATAAT
Found at i:82060731 original size:12 final size:12
Alignment explanation
Indices: 82060701--82060735 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
82060691 TCTATGTTAC
82060701 TTAAAGAATAAT
1 TTAAAGAATAAT
*
82060713 TTAAAAGAGTAAT
1 TT-AAAGAATAAT
82060726 TTAAAGAATA
1 TTAAAGAATA
82060736 TCTAGTCTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.57, C:0.00, G:0.11, T:0.31
Consensus pattern (12 bp):
TTAAAGAATAAT
Found at i:82066604 original size:43 final size:43
Alignment explanation
Indices: 82066521--82066634 Score: 108
Period size: 43 Copynumber: 2.7 Consensus size: 43
82066511 AAGCTCGTAC
***
82066521 AATGCCAACATCCCAGACGTGGTCTTACATGTAATCAAATATT
1 AATGCCAACATCCCAGACGTGGTCTTACACAAAATCAAATATT
* **
82066564 AATGCC-ACTATCCCAGACAG-GGTCTTACACAAAATTAAATACG
1 AATGCCAAC-ATCCCAGAC-GTGGTCTTACACAAAATCAAATATT
* * *
82066607 AA-CCCAACGTCCTAGACGTGGTCTTACA
1 AATGCCAACATCCCAGACGTGGTCTTACA
82066635 TGTAAATCAT
Statistics
Matches: 58, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
41 1 0.02
42 20 0.34
43 36 0.62
44 1 0.02
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (43 bp):
AATGCCAACATCCCAGACGTGGTCTTACACAAAATCAAATATT
Found at i:82068656 original size:42 final size:42
Alignment explanation
Indices: 82068510--82068663 Score: 177
Period size: 42 Copynumber: 3.7 Consensus size: 42
82068500 TACCATACCA
* *
82068510 ATGCCATATCCCAGATATGGTCTT--ACATAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACAAAATCTCATATCG
* * *
82068550 ATGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACAAAATCTCATATCG
* * * * *
82068593 ATGCCACATACTAGATGTGGTCTTACACAAAATCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACACAAAATCTCATATCG
* *
82068635 ATGACATATCCCAAATATGGTCTTACACA
1 ATGCCATATCCCAGATATGGTCTTACACA
82068664 TAAACTTAGT
Statistics
Matches: 92, Mismatches: 19, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
40 5 0.05
41 17 0.18
42 52 0.57
43 18 0.20
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACAAAATCTCATATCG
Found at i:82073218 original size:48 final size:48
Alignment explanation
Indices: 82073142--82073322 Score: 184
Period size: 48 Copynumber: 3.8 Consensus size: 48
82073132 CACCACGATT
* **
82073142 TATGAGAGCCAGTGTAAGACCATATCTGGGACATGGCATCGGTGTTGA
1 TATGTGAGCCAGTGTAAGACCATATCTGGGACATGGCATCGGCATTGA
* * *
82073190 TATGTGAGCCAGTGTAAGACCATGTCTGGGACATCGCATCAGCATTGA
1 TATGTGAGCCAGTGTAAGACCATATCTGGGACATGGCATCGGCATTGA
* * ** * * * * *
82073238 TACGTGTGCTTGTGTAAGACCATATCTAGGATATGGCATCGGCCTCGG
1 TATGTGAGCCAGTGTAAGACCATATCTGGGACATGGCATCGGCATTGA
** *
82073286 TATGTGATTTCA-TGTAAGACCATATCTGGGATATGGC
1 TATGTGA-GCCAGTGTAAGACCATATCTGGGACATGGC
82073323 GTTGATATGA
Statistics
Matches: 107, Mismatches: 25, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
48 107 1.00
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.28
Consensus pattern (48 bp):
TATGTGAGCCAGTGTAAGACCATATCTGGGACATGGCATCGGCATTGA
Found at i:82074340 original size:32 final size:32
Alignment explanation
Indices: 82074299--82074362 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
82074289 ACATATATTT
82074299 ATCATGCATGAGTTAAAGTTATAGGTGTCTAA
1 ATCATGCATGAGTTAAAGTTATAGGTGTCTAA
82074331 ATCATGCATGAGTTAAAGTTATAGGTGTCTAA
1 ATCATGCATGAGTTAAAGTTATAGGTGTCTAA
82074363 GTAGTCCATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.34, C:0.09, G:0.22, T:0.34
Consensus pattern (32 bp):
ATCATGCATGAGTTAAAGTTATAGGTGTCTAA
Found at i:82084025 original size:27 final size:27
Alignment explanation
Indices: 82083983--82084295 Score: 321
Period size: 27 Copynumber: 11.7 Consensus size: 27
82083973 GTTGTGCAAG
* *
82083983 AAAATGATC-AAATACCCCCATAGGCT
1 AAAATGACCGAAATACCCCCATAGGGT
*
82084009 AAAATGACCGAAATACCCCCATTGGGT
1 AAAATGACCGAAATACCCCCATAGGGT
* *
82084036 -AAATGACTGAAATACCCCCTGTAGGGT
1 AAAATGACCGAAATACCCCC-ATAGGGT
*
82084063 AAAATGACCGAAATACCCTCATAGGGT
1 AAAATGACCGAAATACCCCCATAGGGT
* ** *
82084090 AAAATGATCGAAATACCTTCATAAGGT
1 AAAATGACCGAAATACCCCCATAGGGT
* * *
82084117 AAAATGAGCAAAATACCCCTATAGGGT
1 AAAATGACCGAAATACCCCCATAGGGT
* * *
82084144 -AAATGACCAAAACAACCCCATAGGGT
1 AAAATGACCGAAATACCCCCATAGGGT
* *
82084170 AAAATGACCAAAATACCCCAATAGGGT
1 AAAATGACCGAAATACCCCCATAGGGT
82084197 AAAATGACCGAAATACCCCTC-TAGGGT
1 AAAATGACCGAAATACCCC-CATAGGGT
* **
82084224 AAAATGACCAAAATACCCCTGTAGGGT
1 AAAATGACCGAAATACCCCCATAGGGT
* * * *
82084251 ATAATGACTGTAATACCCCTC-TAAGGT
1 AAAATGACCGAAATACCCC-CATAGGGT
* *
82084278 AAAATGACTGTAATACCC
1 AAAATGACCGAAATACCC
82084296 TTGTAAGGTA
Statistics
Matches: 244, Mismatches: 36, Indels: 13
0.83 0.12 0.04
Matches are distributed among these distances:
26 48 0.20
27 179 0.73
28 17 0.07
ACGTcount: A:0.41, C:0.23, G:0.17, T:0.20
Consensus pattern (27 bp):
AAAATGACCGAAATACCCCCATAGGGT
Found at i:82084136 original size:81 final size:80
Alignment explanation
Indices: 82083983--82084312 Score: 355
Period size: 81 Copynumber: 4.1 Consensus size: 80
82083973 GTTGTGCAAG
* * **
82083983 AAAATGATC-AAATACCCCCATAGGCTAAAATGACCGAAATACCCCCATTGGGT-AAATGACTGA
1 AAAATGACCAAAATA-CCCCATAGGGTAAAATGACCGAAATACCCCCATAAGGTAAAATGACTGA
82084046 AATACCCCCTGTAGGGT
65 AATA-CCCCTGTAGGGT
* * ** *
82084063 AAAATGACCGAAATACCCTCATAGGGTAAAATGATCGAAATACCTTCATAAGGTAAAATGAGC-A
1 AAAATGACCAAAATACCC-CATAGGGTAAAATGACCGAAATACCCCCATAAGGTAAAATGA-CTG
*
82084127 AAATACCCCTATAGGGT
64 AAATACCCCTGTAGGGT
* * * * *
82084144 -AAATGACCAAAACAACCCCATAGGGTAAAATGACCAAAATACCCCAATAGGGTAAAATGACCGA
1 AAAATGACCAAAA-TACCCCATAGGGTAAAATGACCGAAATACCCCCATAAGGTAAAATGACTGA
*
82084208 AATACCCCTCTAGGGT
65 AATACCCCTGTAGGGT
* * * *
82084224 AAAATGACCAAAATACCCCTGTAGGGTATAATGACTGTAATACCCCTC-TAAGGTAAAATGACTG
1 AAAATGACCAAAATACCCC-ATAGGGTAAAATGACCGAAATACCCC-CATAAGGTAAAATGACTG
* * *
82084288 TAATACCCTTGTAAGGT
64 AAATACCCCTGTAGGGT
82084305 AAAATGAC
1 AAAATGAC
82084313 TGATTTGCCC
Statistics
Matches: 209, Mismatches: 32, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
79 1 0.00
80 79 0.38
81 117 0.56
82 11 0.05
83 1 0.00
ACGTcount: A:0.41, C:0.22, G:0.17, T:0.20
Consensus pattern (80 bp):
AAAATGACCAAAATACCCCATAGGGTAAAATGACCGAAATACCCCCATAAGGTAAAATGACTGAA
ATACCCCTGTAGGGT
Found at i:82084194 original size:107 final size:108
Alignment explanation
Indices: 82083983--82084258 Score: 346
Period size: 107 Copynumber: 2.6 Consensus size: 108
82083973 GTTGTGCAAG
* * * * **
82083983 AAAATGATC-AAATACCCCCAT-AGGCTAAAATGACCGAAATACCCCCATTGGGTAAATGACTGA
1 AAAATGATCGAAATACCCTCATAAGG-TAAAATGACCAAAATACCCCTATAGGGTAAATGACCAA
* * * *
82084046 AATACCCCCTGTAGGGTAAAATGACCGAAATACCCTCATAGGGT
65 AACAACCCCTATAGGGTAAAATGACCAAAATACCCTCATAGGGT
* *
82084090 AAAATGATCGAAATACCTTCATAAGGTAAAATGAGCAAAATACCCCTATAGGGTAAATGACCAAA
1 AAAATGATCGAAATACCCTCATAAGGTAAAATGACCAAAATACCCCTATAGGGTAAATGACCAAA
82084155 ACAACCCC-ATAGGGTAAAATGACCAAAATACCC-CAATAGGGT
66 ACAACCCCTATAGGGTAAAATGACCAAAATACCCTC-ATAGGGT
* * *
82084197 AAAATGACCGAAATACCCCTC-TAGGGTAAAATGACCAAAATACCCCTGTAGGGTATAATGAC
1 AAAATGATCGAAATA-CCCTCATAAGGTAAAATGACCAAAATACCCCTATAGGGTA-AATGAC
82084259 TGTAATACCC
Statistics
Matches: 147, Mismatches: 17, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
106 1 0.01
107 84 0.57
108 59 0.40
109 3 0.02
ACGTcount: A:0.42, C:0.22, G:0.17, T:0.19
Consensus pattern (108 bp):
AAAATGATCGAAATACCCTCATAAGGTAAAATGACCAAAATACCCCTATAGGGTAAATGACCAAA
ACAACCCCTATAGGGTAAAATGACCAAAATACCCTCATAGGGT
Found at i:82084323 original size:27 final size:27
Alignment explanation
Indices: 82084194--82084314 Score: 125
Period size: 27 Copynumber: 4.5 Consensus size: 27
82084184 ACCCCAATAG
* * * * *
82084194 GGTAAAATGACCGAAATACCCCTCTAG
1 GGTAAAATGACTGTAATACCCTTGTAA
*** * *
82084221 GGTAAAATGACCAAAATACCCCTGTAG
1 GGTAAAATGACTGTAATACCCTTGTAA
* * *
82084248 GGTATAATGACTGTAATACCCCTCTAA
1 GGTAAAATGACTGTAATACCCTTGTAA
82084275 GGTAAAATGACTGTAATACCCTTGTAA
1 GGTAAAATGACTGTAATACCCTTGTAA
82084302 GGTAAAATGACTG
1 GGTAAAATGACTG
82084315 ATTTGCCCTA
Statistics
Matches: 83, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 83 1.00
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.24
Consensus pattern (27 bp):
GGTAAAATGACTGTAATACCCTTGTAA
Found at i:82087378 original size:100 final size:100
Alignment explanation
Indices: 82087205--82087404 Score: 391
Period size: 100 Copynumber: 2.0 Consensus size: 100
82087195 GCCGGATTCA
82087205 TCATCAAGACTGAAGACCTCTCCTCAATTTCCCTTCAGAAGTTTTGGGTTTTCTTTATGTTTTGT
1 TCATCAAGACTGAAGACCTCTCCTCAATTTCCCTTCAGAAGTTTTGGGTTTTCTTTATGTTTTGT
*
82087270 ATTCTATATTCTTCTGAGATGTTTTCTTATTTAGT
66 ATTCTATATTCTCCTGAGATGTTTTCTTATTTAGT
82087305 TCATCAAGACTGAAGACCTCTCCTCAATTTCCCTTCAGAAGTTTTGGGTTTTCTTTATGTTTTGT
1 TCATCAAGACTGAAGACCTCTCCTCAATTTCCCTTCAGAAGTTTTGGGTTTTCTTTATGTTTTGT
82087370 ATTCTATATTCTCCTGAGATGTTTTCTTATTTAGT
66 ATTCTATATTCTCCTGAGATGTTTTCTTATTTAGT
82087405 CATGAACTAA
Statistics
Matches: 99, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
100 99 1.00
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.47
Consensus pattern (100 bp):
TCATCAAGACTGAAGACCTCTCCTCAATTTCCCTTCAGAAGTTTTGGGTTTTCTTTATGTTTTGT
ATTCTATATTCTCCTGAGATGTTTTCTTATTTAGT
Found at i:82095387 original size:13 final size:13
Alignment explanation
Indices: 82095369--82095395 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
82095359 GAAGTAATCG
82095369 CACACGGGCGTGT
1 CACACGGGCGTGT
82095382 CACACGGGCGTGT
1 CACACGGGCGTGT
82095395 C
1 C
82095396 CTTGCTGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:82101056 original size:20 final size:21
Alignment explanation
Indices: 82101022--82101062 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
82101012 CTTCAGTGCC
82101022 TTTGCATTTCAATGC-CTCTA
1 TTTGCATTTCAATGCTCTCTA
**
82101042 TTTGCATTTTGATGCTCTCTA
1 TTTGCATTTCAATGCTCTCTA
82101063 GTGTGTTTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.17, C:0.22, G:0.12, T:0.49
Consensus pattern (21 bp):
TTTGCATTTCAATGCTCTCTA
Found at i:82102730 original size:28 final size:28
Alignment explanation
Indices: 82102707--82102787 Score: 101
Period size: 27 Copynumber: 2.9 Consensus size: 28
82102697 GAATAGTCTT
* *
82102707 TGCAGACTCTTTCTTGAAAGATAGCCCA
1 TGCAGACTCTTGCTTGAAAGATAGTCCA
* *
82102735 TGCAGACTATTGCTTCAAA-ATAGTCCA
1 TGCAGACTCTTGCTTGAAAGATAGTCCA
* *
82102762 TACAGACACTTGCTTGAAAGATAGTC
1 TGCAGACTCTTGCTTGAAAGATAGTC
82102788 GGTAAGGACT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
27 22 0.50
28 22 0.50
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.28
Consensus pattern (28 bp):
TGCAGACTCTTGCTTGAAAGATAGTCCA
Found at i:82107258 original size:22 final size:22
Alignment explanation
Indices: 82107208--82107250 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
82107198 CCATAGACAG
*
82107208 GACAACACATAGCCGTAAACAA
1 GACAGCACATAGCCGTAAACAA
*
82107230 GACAGCACATAGCTGTAAACA
1 GACAGCACATAGCCGTAAACA
82107251 TCGCAGCAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.47, C:0.26, G:0.16, T:0.12
Consensus pattern (22 bp):
GACAGCACATAGCCGTAAACAA
Found at i:82107467 original size:19 final size:20
Alignment explanation
Indices: 82107443--82107486 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 20
82107433 CCTTAGGCAA
82107443 ATATGT-TTGGCACAAAGCC
1 ATATGTGTTGGCACAAAGCC
*
82107462 ATATGTAGGTTGGCGCAAAGCC
1 ATATGT--GTTGGCACAAAGCC
82107484 ATA
1 ATA
82107487 ATCAGAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 6 0.29
22 15 0.71
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (20 bp):
ATATGTGTTGGCACAAAGCC
Found at i:82107695 original size:41 final size:41
Alignment explanation
Indices: 82107650--82107755 Score: 149
Period size: 41 Copynumber: 2.6 Consensus size: 41
82107640 TCCATGGTCG
* * *
82107650 TCAAGCAACCATGTGATCCTTAATCAGTGGATCCGCAATCA
1 TCAAGCAACCATGCGATCCTCAATCAGTGGATCCACAATCA
* ** *
82107691 TCAAGCAACCATGCGATCCTCAATCGGTGGATCCACGGTCG
1 TCAAGCAACCATGCGATCCTCAATCAGTGGATCCACAATCA
82107732 TCAAGCAACCATGCGATCCTCAAT
1 TCAAGCAACCATGCGATCCTCAAT
82107756 TTCTTCCTCT
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 58 1.00
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (41 bp):
TCAAGCAACCATGCGATCCTCAATCAGTGGATCCACAATCA
Found at i:82108064 original size:27 final size:27
Alignment explanation
Indices: 82107993--82108299 Score: 208
Period size: 27 Copynumber: 11.4 Consensus size: 27
82107983 TTTCACCATA
* * * **
82107993 CAAGGGTGTTTTGGTAAATCTATGAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * *
82108020 CAAGGGCATTTCGATAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
** *
82108047 CAAGGGTATTTAT-GTAATTTTTGAAAGT
1 CAAGGGTATTT-TGGTAATTTTACAAA-C
* *
82108075 CAAAGGTATTTTGGTAATTTTCCAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * *
82108102 CAGGGGTATTTTGGTAATTTTATAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
** * **
82108129 TGAGGGTATTTAGGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * * **
82108156 CGAGAGTATTTTAGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
82108183 TAAAGGTATTTTGGTAA-TTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAC
** * *
82108208 TTAGGGTATTTTAGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * * *
82108235 C-AGGGATATTTTGATAATTTTGCTAAT
1 CAAGGG-TATTTTGGTAATTTTACAAAC
* **
82108262 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
82108289 CAAGGGTATTT
1 CAAGGGTATTT
82108300 CAATAATTCT
Statistics
Matches: 218, Mismatches: 55, Indels: 14
0.76 0.19 0.05
Matches are distributed among these distances:
25 14 0.06
26 18 0.08
27 161 0.74
28 25 0.11
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Found at i:82108358 original size:28 final size:27
Alignment explanation
Indices: 82108292--82108361 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
82108282 TGTAAACCAA
* * *
82108292 GGGTATTTCAATAATTCTACCCTATAG
1 GGGTATTTCAGTAATTCAACCCTACAG
*
82108319 GGGCATTTCAGTAATTCAACCCTACAGG
1 GGGTATTTCAGTAATTCAACCCTACA-G
82108347 GGGTATTTCAGTAAT
1 GGGTATTTCAGTAAT
82108362 ACTAGCCTAC
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 22 0.59
28 15 0.41
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.33
Consensus pattern (27 bp):
GGGTATTTCAGTAATTCAACCCTACAG
Found at i:82108370 original size:28 final size:28
Alignment explanation
Indices: 82108292--82108373 Score: 103
Period size: 28 Copynumber: 3.0 Consensus size: 28
82108282 TGTAAACCAA
* *
82108292 GGGTATTTCAATAATTCTACCCTATA-G
1 GGGTATTTCAGTAATTCTACCCTACAGG
* *
82108319 GGGCATTTCAGTAATTCAACCCTACAGG
1 GGGTATTTCAGTAATTCTACCCTACAGG
* *
82108347 GGGTATTTCAGTAATACTAGCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
82108374 ATATGAGATT
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
27 22 0.48
28 24 0.52
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (28 bp):
GGGTATTTCAGTAATTCTACCCTACAGG
Found at i:82111703 original size:24 final size:24
Alignment explanation
Indices: 82111660--82111705 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
82111650 TAAAGAAAGG
*
82111660 GAAAAAAAAGAGAAAGAAAATGAT
1 GAAAAAAAAGAGAAAAAAAATGAT
82111684 GAAAACAAAAGA-AAAAAAAATG
1 GAAAA-AAAAGAGAAAAAAAATG
82111706 TGTCCATCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.74, C:0.02, G:0.17, T:0.07
Consensus pattern (24 bp):
GAAAAAAAAGAGAAAAAAAATGAT
Done.