Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 248 of 349
Found at i:82113092 original size:40 final size:40
Alignment explanation
Indices: 82112945--82113128 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
82112935 TCGAATGATG
* * * * *
82112945 TCCGGGCTAAGTCCCGAAGGC-TTTATGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
82112985 TCCGGACTAAGAT-CCGAAGGCATTTGT-CGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
82113024 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
82113063 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
82113104 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
82113129 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 13 0.10
39 37 0.30
40 67 0.54
41 7 0.06
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:82113159 original size:79 final size:78
Alignment explanation
Indices: 82112984--82113161 Score: 193
Period size: 79 Copynumber: 2.3 Consensus size: 78
82112974 AAGTGACCAT
* *
82112984 ATCCGGACTAAGA-TCCGAAGGCATTTGTCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTG
1 ATCCGGATTAA-ATTCCGAAGGCATTTGTCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTG
**
82113048 GTGCGAGTTACTAA
65 GAACGAGTTACTAA
* * * *
82113062 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 ATCCGGATTAAATTCCGAAGGCATTTGT-CGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
* *
82113126 TTGAACGAG-TAGCTAT
63 TGGAACGAGTTA-CTAA
82113142 ATCC-GATTAAATTCCGAAGG
1 ATCCGGATTAAATTCCGAAGG
82113162 TACGTGATTC
Statistics
Matches: 82, Mismatches: 13, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
78 25 0.30
79 33 0.40
80 24 0.29
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.25
Consensus pattern (78 bp):
ATCCGGATTAAATTCCGAAGGCATTTGTCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGG
AACGAGTTACTAA
Found at i:82119703 original size:22 final size:23
Alignment explanation
Indices: 82119668--82119710 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
82119658 TAAAGAAATG
*
82119668 GAAAAAAAAGAGAAGAAAATGAT
1 GAAAAAAAAGAGAAAAAAATGAT
*
82119691 GAAAACAAA-AGAAAAAAATG
1 GAAAAAAAAGAGAAAAAAATG
82119711 TGTCCATCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.72, C:0.02, G:0.19, T:0.07
Consensus pattern (23 bp):
GAAAAAAAAGAGAAAAAAATGAT
Found at i:82121038 original size:39 final size:41
Alignment explanation
Indices: 82120937--82121120 Score: 222
Period size: 40 Copynumber: 4.6 Consensus size: 41
82120927 TCGAATGATG
* * *
82120937 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAATA
*
82120977 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATA
*
82121017 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
*
82121056 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
* *
82121096 ACC-GGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
82121121 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
39 56 0.44
40 60 0.48
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
Found at i:82121073 original size:79 final size:81
Alignment explanation
Indices: 82120937--82121118 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
82120927 TCGAATGATG
* *
82120937 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
82121001 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
82121016 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
82121078 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
82121096 ACC-GGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
82121119 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
78 7 0.08
79 64 0.72
80 18 0.20
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:82121127 original size:79 final size:78
Alignment explanation
Indices: 82120990--82121153 Score: 199
Period size: 79 Copynumber: 2.1 Consensus size: 78
82120980 GGACTAAGAT
* **
82120990 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTA-CTA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAG-TAGCTA
*
82121054 AATCCGGGTTAAGTC
65 AATCC-GGTTAAATC
* *
82121069 CCGAAGGCATTTGTGCGAGTTACT-ATAACC-GGCTATGTCCCGAAGGCATTTGAACGAGTAGCT
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTAGCT
* *
82121132 ATATCCGGTTAAATT
64 AAATCCGGTTAAATC
82121147 CCGAAGG
1 CCGAAGG
82121154 TACGTGATTC
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
78 24 0.32
79 50 0.68
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTAGCTAA
ATCCGGTTAAATC
Found at i:82121151 original size:39 final size:39
Alignment explanation
Indices: 82120944--82121153 Score: 196
Period size: 39 Copynumber: 5.3 Consensus size: 39
82120934 ATGTCCGGGC
* * * *
82120944 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGAC
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGG-T
*
82120984 TAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGC
1 TAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-TCC-GGT
* *
82121024 TAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC-GGT
* *
82121063 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGT
* **
82121102 TATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCCGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGT
* *
82121141 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
82121154 TACGTGATTC
Statistics
Matches: 145, Mismatches: 17, Indels: 17
0.81 0.09 0.09
Matches are distributed among these distances:
38 2 0.01
39 78 0.54
40 55 0.38
41 10 0.07
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGT
Found at i:82124205 original size:28 final size:29
Alignment explanation
Indices: 82124169--82124246 Score: 95
Period size: 28 Copynumber: 2.7 Consensus size: 29
82124159 CTTAATAATC
*
82124169 AACCACGCACACTTAGTGCCATGTACTT-A
1 AACC-CGCACACTTAGTGCCATGCACTTCA
* *
82124198 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCACTTCA
* *
82124227 AGCCCGCATACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
82124247 ATCTCACAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
28 21 0.50
29 21 0.50
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCACTTCA
Found at i:82132249 original size:29 final size:29
Alignment explanation
Indices: 82132210--82132288 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
82132200 CTTAATAATC
*
82132210 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
82132240 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
82132269 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
82132289 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:82139016 original size:28 final size:27
Alignment explanation
Indices: 82138953--82139104 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
82138943 ATATTAAGTC
* * *
82138953 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
82138980 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
82139008 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
82139035 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
82139063 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
82139090 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
82139105 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:82139037 original size:55 final size:55
Alignment explanation
Indices: 82138953--82139104 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
82138943 ATATTAAGTC
* * *
82138953 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
82139008 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
82139063 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
82139105 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:82145704 original size:42 final size:42
Alignment explanation
Indices: 82145645--82145736 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
82145635 TGGCCCTTAG
** *
82145645 GCCCATTTCAATATCACATGAAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
82145687 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
82145729 GCCCATTT
1 GCCCATTT
82145737 GGGGAGACTA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.28
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:82145909 original size:25 final size:26
Alignment explanation
Indices: 82145881--82145977 Score: 162
Period size: 25 Copynumber: 3.8 Consensus size: 26
82145871 CCTCTTTAAT
82145881 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
82145906 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
**
82145931 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
82145957 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
82145978 GCACTTCCTC
Statistics
Matches: 69, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
25 35 0.51
26 34 0.49
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:82145959 original size:51 final size:51
Alignment explanation
Indices: 82145881--82145977 Score: 160
Period size: 51 Copynumber: 1.9 Consensus size: 51
82145871 CCTCTTTAAT
**
82145881 AACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTA
82145931 AACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
1 AACTGGGGCA-AAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
82145978 GCACTTCCTC
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
50 10 0.23
51 23 0.53
52 10 0.23
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (51 bp):
AACTGGGGCAAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTA
Found at i:82146066 original size:27 final size:27
Alignment explanation
Indices: 82146036--82146100 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
82146026 GGGCATATTC
*
82146036 GTCATTTTACTATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
82146063 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
82146090 GTCTTTTTACC
1 GTCATTTTACC
82146101 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:82146184 original size:27 final size:27
Alignment explanation
Indices: 82146154--82146239 Score: 95
Period size: 27 Copynumber: 3.1 Consensus size: 27
82146144 GTAAATCTAC
82146154 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
82146181 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
82146207 AGAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
82146237 AAA
1 AAA
82146240 TCTGGGGTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
26 1 0.02
27 22 0.45
28 7 0.14
29 18 0.37
30 1 0.02
ACGTcount: A:0.35, C:0.09, G:0.16, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:82146303 original size:54 final size:54
Alignment explanation
Indices: 82146243--82146400 Score: 196
Period size: 54 Copynumber: 2.9 Consensus size: 54
82146233 TTGTAAATCT
*
82146243 GGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGATAATTTCACAAACTA
1 GGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTCGATAATTTCACAAACTA
* * * *
82146297 GTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTA
1 GGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGATAATTTCACAAACTA
* **
82146351 GGGGTATTTTGGTAATTCTATCCTAC-AGGGGTATTTC-AGTAATTTCACAA
1 GGGGTATTTTGGTAATTTTA-CAAACTAGGGGTATTTCGA-TAATTTCACAA
82146401 TCGAGGGTAA
Statistics
Matches: 89, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
54 84 0.94
55 5 0.06
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (54 bp):
GGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGATAATTTCACAAACTA
Found at i:82146386 original size:27 final size:27
Alignment explanation
Indices: 82146217--82146367 Score: 191
Period size: 27 Copynumber: 5.6 Consensus size: 27
82146207 AGAAAGTCAA
**
82146217 GGGTATTTCT-GTAATTTTGTAAATCT-G
1 GGGTATTT-TGGTAATTTTACAAA-CTAG
*
82146244 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * *
82146270 AGGGTATTTCGATAATTTCACAAACTAG
1 -GGGTATTTTGGTAATTTTACAAACTAG
*
82146298 TGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
82146325 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
82146352 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
82146368 CTATCCTACA
Statistics
Matches: 109, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
25 1 0.01
26 2 0.02
27 104 0.95
28 2 0.02
ACGTcount: A:0.28, C:0.07, G:0.22, T:0.43
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:82146393 original size:81 final size:81
Alignment explanation
Indices: 82146217--82146400 Score: 196
Period size: 81 Copynumber: 2.3 Consensus size: 81
82146207 AGAAAGTCAA
* ** *
82146217 GGGTATTTCTGTAATTTTGTAAATCTGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGA
1 GGGTATTTCAGTAATTTTACAAATCTGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGA
82146282 TAATTTCACAAACTAG
66 TAATTTCACAAACTAG
* ** *
82146298 TGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTT
1 GGGTATTTCAGTAATTTTACAAATCT-GGGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTC
* **
82146361 GGTAA-TTCTATCCTAC-AG
64 GATAATTTC-A-CAAACTAG
*
82146379 GGGTATTTCAGTAATTTCACAA
1 GGGTATTTCAGTAATTTTACAA
82146401 TCGAGGGTAA
Statistics
Matches: 85, Mismatches: 14, Indels: 8
0.79 0.13 0.07
Matches are distributed among these distances:
80 5 0.06
81 75 0.88
82 5 0.06
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.41
Consensus pattern (81 bp):
GGGTATTTCAGTAATTTTACAAATCTGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGA
TAATTTCACAAACTAG
Found at i:82146439 original size:27 final size:27
Alignment explanation
Indices: 82146399--82146649 Score: 283
Period size: 27 Copynumber: 9.3 Consensus size: 27
82146389 GTAATTTCAC
* *
82146399 AATCGAGGGTAAAATGGTAATTTTTTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * * *
82146426 AA-CTGATGGTAAAACGATAATTCTGTA
1 AATC-GAGGGTAAAATGGTAATTCTATA
*
82146453 AATCGAGGGTAAAATGATAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
82146480 AATCGAGGGTAAAACT-GTAATTTTGTA
1 AATCGAGGGTAAAA-TGGTAATTCTATA
* ***
82146507 AATCGAGGGTGAAACAATAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
82146534 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * *
82146561 AATCGAGGGTAAACT-GTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * *
82146587 AATTGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
82146614 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTCTATA
82146641 AATCGAGGG
1 AATCGAGGG
82146650 CATTTCAGTA
Statistics
Matches: 186, Mismatches: 33, Indels: 10
0.81 0.14 0.04
Matches are distributed among these distances:
26 21 0.11
27 163 0.88
28 2 0.01
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.30
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTATA
Found at i:82146625 original size:80 final size:80
Alignment explanation
Indices: 82146399--82146649 Score: 385
Period size: 81 Copynumber: 3.1 Consensus size: 80
82146389 GTAATTTCAC
* * * * * *
82146399 AATCGAGGGTAAAATGGTAATTTTTTAAACTGATGGTAAAACGATAATTCTGTAAATCGAGGGTA
1 AATCGAGGGTAAACT-GTAATTTTGTAAATTGAGGGTGAAACGATAATTCTATAAATCGAGGGTA
*
82146464 AAATGATAATTCTATA
65 AAATGGTAATTCTATA
* *
82146480 AATCGAGGGTAAAACTGTAATTTTGTAAATCGAGGGTGAAACAATAATTCTATAAATCGAGGGTA
1 AATCGAGGGT-AAACTGTAATTTTGTAAATTGAGGGTGAAACGATAATTCTATAAATCGAGGGTA
82146545 AAATGGTAATTCTATA
65 AAATGGTAATTCTATA
*
82146561 AATCGAGGGTAAACTGTAATTTTGTAAATTGAGGGTGAAACGGTAATTCTATAAATCGAGGGTAA
1 AATCGAGGGTAAACTGTAATTTTGTAAATTGAGGGTGAAACGATAATTCTATAAATCGAGGGTAA
*
82146626 AATGGTAATTCTACA
66 AATGGTAATTCTATA
82146641 AATCGAGGG
1 AATCGAGGG
82146650 CATTTCAGTA
Statistics
Matches: 156, Mismatches: 13, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
80 75 0.48
81 77 0.49
82 4 0.03
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.30
Consensus pattern (80 bp):
AATCGAGGGTAAACTGTAATTTTGTAAATTGAGGGTGAAACGATAATTCTATAAATCGAGGGTAA
AATGGTAATTCTATA
Found at i:82148156 original size:11 final size:11
Alignment explanation
Indices: 82148140--82148194 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
82148130 CATGATTGAT
82148140 ATGATATGCAC
1 ATGATATGCAC
*
82148151 ATGATATG--T
1 ATGATATGCAC
82148160 ATGATATGCAC
1 ATGATATGCAC
*
82148171 AT-ATATG--T
1 ATGATATGCAC
82148179 ATGATATGCAC
1 ATGATATGCAC
82148190 ATGAT
1 ATGAT
82148195 GTATTCATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 10
0.71 0.08 0.20
Matches are distributed among these distances:
8 2 0.06
9 13 0.37
10 5 0.14
11 15 0.43
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.35
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:82148178 original size:19 final size:20
Alignment explanation
Indices: 82148129--82148194 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
82148119 GTTTTGATAT
82148129 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
82148149 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
82148169 ACAT-ATATGTATGATATGC
1 ACATGATATGTATGATATGC
82148188 ACATGAT
1 ACATGAT
82148195 GTATTCATAA
Statistics
Matches: 44, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
19 19 0.43
20 23 0.52
21 2 0.05
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.35
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:82148349 original size:24 final size:25
Alignment explanation
Indices: 82148252--82148349 Score: 128
Period size: 25 Copynumber: 3.9 Consensus size: 25
82148242 AAAAGAGCTA
** *
82148252 TGCCCCAGTTTACCGAAACGGGCTTT
1 TGCCCCAGTTTA-TTAAAAGGGCTTT
82148278 TGCCCCAGTTTATTAAAAGGGCTTT
1 TGCCCCAGTTTATTAAAAGGGCTTT
*
82148303 TGCCCCAGTTTATCAAAAGGGCTTT
1 TGCCCCAGTTTATTAAAAGGGCTTT
82148328 T-CCCCAG-TTATTAAAAGAGGCT
1 TGCCCCAGTTTATTAAAAG-GGCT
82148350 AGGCCTCCAG
Statistics
Matches: 66, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
23 9 0.14
24 10 0.15
25 35 0.53
26 12 0.18
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.31
Consensus pattern (25 bp):
TGCCCCAGTTTATTAAAAGGGCTTT
Found at i:82148611 original size:38 final size:38
Alignment explanation
Indices: 82148556--82148650 Score: 172
Period size: 38 Copynumber: 2.5 Consensus size: 38
82148546 ACCGTTTACA
* *
82148556 GAAAAGGCTCCGACCCAGTGTTATGAAATATGAAATAT
1 GAAAAGGCTTCGGCCCAGTGTTATGAAATATGAAATAT
82148594 GAAAAGGCTTCGGCCCAGTGTTATGAAATATGAAATAT
1 GAAAAGGCTTCGGCCCAGTGTTATGAAATATGAAATAT
82148632 GAAAAGGCTTCGGCCCAGT
1 GAAAAGGCTTCGGCCCAGT
82148651 ATACGCTGAG
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 55 1.00
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (38 bp):
GAAAAGGCTTCGGCCCAGTGTTATGAAATATGAAATAT
Found at i:82155698 original size:29 final size:29
Alignment explanation
Indices: 82155564--82155699 Score: 143
Period size: 29 Copynumber: 4.8 Consensus size: 29
82155554 AATAATAATT
* * * *
82155564 TCTATAAAAGTGA-GCCTTTGGGGTTATC
1 TCTATTAAAGGGACGCCTTTGTGGCTATC
*
82155592 TCTATTAAATGGA-GACCTTTGTGGCTATC
1 TCTATTAAAGGGACG-CCTTTGTGGCTATC
* * * *
82155621 TCTGTTAAAGGAATGCCTTTGTGGCTATT
1 TCTATTAAAGGGACGCCTTTGTGGCTATC
*
82155650 TGTATT-AAGGGACGCCTTTGTGGCTATC
1 TCTATTAAAGGGACGCCTTTGTGGCTATC
*
82155678 TCTATTAAAGGGACGTCTTTGT
1 TCTATTAAAGGGACGCCTTTGT
82155700 AACATCCCAA
Statistics
Matches: 89, Mismatches: 16, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
28 35 0.39
29 53 0.60
30 1 0.01
ACGTcount: A:0.22, C:0.15, G:0.24, T:0.38
Consensus pattern (29 bp):
TCTATTAAAGGGACGCCTTTGTGGCTATC
Found at i:82164611 original size:30 final size:30
Alignment explanation
Indices: 82164575--82164638 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 30
82164565 TTTGTGAAAG
*
82164575 GATTCTCCGTGATTGCTACTCTGATGACGA
1 GATTCTCCATGATTGCTACTCTGATGACGA
*
82164605 GATTCTCCATGATTGCTACTCTGATGGCGA
1 GATTCTCCATGATTGCTACTCTGATGACGA
82164635 GATT
1 GATT
82164639 ATTACAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.34
Consensus pattern (30 bp):
GATTCTCCATGATTGCTACTCTGATGACGA
Found at i:82170484 original size:48 final size:48
Alignment explanation
Indices: 82170411--82170590 Score: 225
Period size: 48 Copynumber: 3.8 Consensus size: 48
82170401 ACCATGCTAA
*
82170411 ATGTGTCTATGTAAGACCATGTCTGGGACATGGCATCGACGATGATAT
1 ATGTGCCTATGTAAGACCATGTCTGGGACATGGCATCGACGATGATAT
* * ** *
82170459 ATGTGCCTGTGTAAGACCATATCTGGGACATGGCATCGGTGATGATAA
1 ATGTGCCTATGTAAGACCATGTCTGGGACATGGCATCGACGATGATAT
* * * * * *
82170507 ATGTGTCTATGCAATACCATGTTTGGGACATGGCATCAACAATGATAT
1 ATGTGCCTATGTAAGACCATGTCTGGGACATGGCATCGACGATGATAT
* * *
82170555 ATGTGCCTGTGTAATACCATGTCTGGGACGTGGCAT
1 ATGTGCCTATGTAAGACCATGTCTGGGACATGGCAT
82170591 GTAACACCCC
Statistics
Matches: 110, Mismatches: 22, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 110 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (48 bp):
ATGTGCCTATGTAAGACCATGTCTGGGACATGGCATCGACGATGATAT
Found at i:82170574 original size:96 final size:96
Alignment explanation
Indices: 82170408--82170590 Score: 294
Period size: 96 Copynumber: 1.9 Consensus size: 96
82170398 GACACCATGC
* * *
82170408 TAAATGTGTCTATGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCCTGTGTAA
1 TAAATGTGTCTATGCAAGACCATGTCTGGGACATGGCATCAACAATGATATATGTGCCTGTGTAA
82170473 GACCATATCTGGGACATGGCATCGGTGATGA
66 GACCATATCTGGGACATGGCATCGGTGATGA
* *
82170504 TAAATGTGTCTATGCAATACCATGTTTGGGACATGGCATCAACAATGATATATGTGCCTGTGTAA
1 TAAATGTGTCTATGCAAGACCATGTCTGGGACATGGCATCAACAATGATATATGTGCCTGTGTAA
* * *
82170569 TACCATGTCTGGGACGTGGCAT
66 GACCATATCTGGGACATGGCAT
82170591 GTAACACCCC
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
96 79 1.00
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (96 bp):
TAAATGTGTCTATGCAAGACCATGTCTGGGACATGGCATCAACAATGATATATGTGCCTGTGTAA
GACCATATCTGGGACATGGCATCGGTGATGA
Found at i:82170813 original size:20 final size:19
Alignment explanation
Indices: 82170780--82170818 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
82170770 GGACTAAACC
82170780 GAAAACTTTAAAAACTTTCA
1 GAAAACTTTAAAAA-TTTCA
82170800 GAAAAC-TTAGAAAATTTCA
1 GAAAACTTTA-AAAATTTCA
82170819 TCATGAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.51, C:0.13, G:0.08, T:0.28
Consensus pattern (19 bp):
GAAAACTTTAAAAATTTCA
Found at i:82171208 original size:40 final size:40
Alignment explanation
Indices: 82171164--82171283 Score: 96
Period size: 40 Copynumber: 3.1 Consensus size: 40
82171154 CATTTGCATG
82171164 CACATGACATTTCTCTTATTCAAGTCCAAACTTACCAAAA
1 CACATGACATTTCTCTTATTCAAGTCCAAACTTACCAAAA
* * * **
82171204 CACATG-CATGGTATC-CTCA--CAA---CAACACAT-GC-ATG
1 CACATGACAT--T-TCTCTTATTCAAGTCCAA-ACTTACCAAAA
82171239 CACATGACATTTCTCTTATTCAAGTCCAAACTTACCAAAA
1 CACATGACATTTCTCTTATTCAAGTCCAAACTTACCAAAA
82171279 CACAT
1 CACAT
82171284 ATAATATATA
Statistics
Matches: 57, Mismatches: 10, Indels: 26
0.61 0.11 0.28
Matches are distributed among these distances:
33 2 0.04
34 4 0.07
35 7 0.12
36 10 0.18
37 3 0.05
38 3 0.05
39 10 0.18
40 12 0.21
41 4 0.07
42 2 0.04
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (40 bp):
CACATGACATTTCTCTTATTCAAGTCCAAACTTACCAAAA
Found at i:82172725 original size:42 final size:43
Alignment explanation
Indices: 82172660--82172761 Score: 102
Period size: 42 Copynumber: 2.4 Consensus size: 43
82172650 AATCCCAGAT
* * * *
82172660 ATGGTCTTACATGAAAT-ATCATACTGACGCCATGTCCC-TGAC
1 ATGGTCTTATACGAAATCATCATACCGACGCCATATCCCGT-AC
* * *
82172702 ATGGTCTTATACGAAATCA-CATACCGAGGTCATATCCCGTAT
1 ATGGTCTTATACGAAATCATCATACCGACGCCATATCCCGTAC
*
82172744 ATGGTCTTATACGGAATC
1 ATGGTCTTATACGAAATC
82172762 TTAATAACCT
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
42 48 0.96
43 2 0.04
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (43 bp):
ATGGTCTTATACGAAATCATCATACCGACGCCATATCCCGTAC
Found at i:82174048 original size:48 final size:49
Alignment explanation
Indices: 82173955--82174075 Score: 174
Period size: 48 Copynumber: 2.5 Consensus size: 49
82173945 ATCAGGATGT
* **
82173955 TACATGGCATCGGTGATGAATATATGTGCCTGTGTAAGACCATGTCT-AG
1 TACATGGCATCGGTGATG-ATATGTGTGCCACTGTAAGACCATGTCTAAG
* *
82174004 TACATGGCATCGGCGATGATATGTGTGCCACTGTAAGACTATGTCTAAG
1 TACATGGCATCGGTGATGATATGTGTGCCACTGTAAGACCATGTCTAAG
82174053 -ACATGGCATCGGTGATGATATGT
1 TACATGGCATCGGTGATGATATGT
82174076 AGATTTATGT
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
48 46 0.71
49 19 0.29
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (49 bp):
TACATGGCATCGGTGATGATATGTGTGCCACTGTAAGACCATGTCTAAG
Found at i:82178133 original size:29 final size:29
Alignment explanation
Indices: 82178091--82178197 Score: 115
Period size: 29 Copynumber: 3.7 Consensus size: 29
82178081 GGTTGTTATA
*
82178091 GCCTTTGAGGCTATCTCTGTTAAAGGAAT
1 GCCTTTGTGGCTATCTCTGTTAAAGGAAT
*
82178120 GCCTTTGTGGCTATCTCTGCTAAAGGAAT
1 GCCTTTGTGGCTATCTCTGTTAAAGGAAT
* * * * **
82178149 GCCTTTATGTCTACCTATGTTAATTGAAT
1 GCCTTTGTGGCTATCTCTGTTAAAGGAAT
* *
82178178 GCTTTTGTGGCAATACTCTG
1 GCCTTTGTGGCTAT-CTCTG
82178198 AAGTGAAAGC
Statistics
Matches: 62, Mismatches: 15, Indels: 1
0.79 0.19 0.01
Matches are distributed among these distances:
29 58 0.94
30 4 0.06
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.38
Consensus pattern (29 bp):
GCCTTTGTGGCTATCTCTGTTAAAGGAAT
Found at i:82180272 original size:30 final size:30
Alignment explanation
Indices: 82180233--82180289 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
82180223 ATCGATTTTC
*
82180233 AAGTATAGGGGTAAAATAGTCATTTTGTGA
1 AAGTATAGGGGCAAAATAGTCATTTTGTGA
* *
82180263 AAGTCTAGGGGCAAAATATTCATTTTG
1 AAGTATAGGGGCAAAATAGTCATTTTG
82180290 CCCAATTATG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.35, C:0.07, G:0.25, T:0.33
Consensus pattern (30 bp):
AAGTATAGGGGCAAAATAGTCATTTTGTGA
Found at i:82190126 original size:17 final size:17
Alignment explanation
Indices: 82190104--82190138 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
82190094 TGTTTAGCAA
*
82190104 TGTTTTTATCTCAAAAG
1 TGTTTTTACCTCAAAAG
82190121 TGTTTTTACCTCAAAAG
1 TGTTTTTACCTCAAAAG
82190138 T
1 T
82190139 ACTTCTTAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.14, G:0.11, T:0.46
Consensus pattern (17 bp):
TGTTTTTACCTCAAAAG
Found at i:82192530 original size:12 final size:13
Alignment explanation
Indices: 82192515--82192543 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
82192505 TAAAAACTTG
82192515 AAAAAA-AAAAGA
1 AAAAAATAAAAGA
82192527 AAAAAATAAAAGA
1 AAAAAATAAAAGA
82192540 AAAA
1 AAAA
82192544 GAGCAAACGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.38
13 10 0.62
ACGTcount: A:0.90, C:0.00, G:0.07, T:0.03
Consensus pattern (13 bp):
AAAAAATAAAAGA
Found at i:82211086 original size:40 final size:39
Alignment explanation
Indices: 82210856--82211098 Score: 251
Period size: 40 Copynumber: 6.1 Consensus size: 39
82210846 TCGAATGATG
* * *
82210856 TCCGGACTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-A
*
82210896 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
* *
82210935 TTCCGAGCTAAGT-TCGAAGGCATTTGTGCGAGTTACTAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
82210974 TTCCGAGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
* *
82211014 TTCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* * ** *
82211054 ACCGGGCTATGTCCCGAAGGCATTTGAACGAGTTGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
82211094 TCCGG
1 TCCGG
82211099 TTAAATTCCG
Statistics
Matches: 177, Mismatches: 19, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
39 70 0.40
40 99 0.56
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:82211101 original size:79 final size:79
Alignment explanation
Indices: 82210863--82211112 Score: 269
Period size: 79 Copynumber: 3.2 Consensus size: 79
82210853 ATGTCCGGAC
* * *
82210863 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCG
*
82210926 AGTTACTAATTCCGAGC
64 AGTTACTAATTCCG-GT
* * *
82210943 TAAGT-TCGAAGGCATTTGTGCGAGTTACTA-ATTCCGAGCTAAG-CCCGAAGGCATTGGTGCGA
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA
*
82211005 GTTACTAAATTCGGGT
65 GTTACT-AATTCCGGT
* * **
82211021 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
*
82211086 TTGCT-ATATCCGGT
66 TTACTAAT-TCCGGT
* *
82211100 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
82211113 TACGTGATTC
Statistics
Matches: 143, Mismatches: 19, Indels: 17
0.80 0.11 0.09
Matches are distributed among these distances:
78 32 0.22
79 77 0.54
80 34 0.24
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (79 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
TTACTAATTCCGGT
Found at i:82220663 original size:28 final size:28
Alignment explanation
Indices: 82220620--82220702 Score: 109
Period size: 27 Copynumber: 3.1 Consensus size: 28
82220610 TGAAGGAAGC
* *
82220620 GTTT-TGGTGGCCATGCCTCAAATATCT
1 GTTTCTGGTGGCTATGCCACAAATATCT
82220647 GTTTCTGGTGGCTATGCCACAAATATCT
1 GTTTCTGGTGGCTATGCCACAAATATCT
* *
82220675 -ATTCTGGTGGCTTTGCCAC-AATATCT
1 GTTTCTGGTGGCTATGCCACAAATATCT
82220701 GT
1 GT
82220703 ATCTAGTGAC
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
26 7 0.14
27 21 0.43
28 21 0.43
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (28 bp):
GTTTCTGGTGGCTATGCCACAAATATCT
Found at i:82220691 original size:27 final size:28
Alignment explanation
Indices: 82220624--82220701 Score: 106
Period size: 28 Copynumber: 2.9 Consensus size: 28
82220614 GGAAGCGTTT
* * *
82220624 TGGTGGCCATGCCTCAAATATCTGTTTC
1 TGGTGGCTATGCCACAAATATCTGATTC
82220652 TGGTGGCTATGCCACAAATATCT-ATTC
1 TGGTGGCTATGCCACAAATATCTGATTC
*
82220679 TGGTGGCTTTGCCAC-AATATCTG
1 TGGTGGCTATGCCACAAATATCTG
82220702 TATCTAGTGA
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
26 7 0.16
27 17 0.38
28 21 0.47
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.35
Consensus pattern (28 bp):
TGGTGGCTATGCCACAAATATCTGATTC
Found at i:82227955 original size:8 final size:8
Alignment explanation
Indices: 82227939--82227996 Score: 55
Period size: 8 Copynumber: 7.4 Consensus size: 8
82227929 TAGATCGGCT
82227939 AAAGCCGA
1 AAAGCCGA
*
82227947 AAAGTCGA
1 AAAGCCGA
*
82227955 AATGCCGA
1 AAAGCCGA
*
82227963 AATGCCGA
1 AAAGCCGA
*
82227971 AATGCCGA
1 AAAGCCGA
*
82227979 AATGCCGA
1 AAAGCCGA
*
82227987 AGAGCC-A
1 AAAGCCGA
82227994 AAA
1 AAA
82227997 TTTTATGAAC
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
7 3 0.07
8 41 0.93
ACGTcount: A:0.45, C:0.22, G:0.24, T:0.09
Consensus pattern (8 bp):
AAAGCCGA
Found at i:82227963 original size:16 final size:16
Alignment explanation
Indices: 82227942--82227987 Score: 65
Period size: 16 Copynumber: 2.9 Consensus size: 16
82227932 ATCGGCTAAA
*
82227942 GCCGAAAAGTCGAAAT
1 GCCGAAAAGCCGAAAT
*
82227958 GCCGAAATGCCGAAAT
1 GCCGAAAAGCCGAAAT
*
82227974 GCCGAAATGCCGAA
1 GCCGAAAAGCCGAA
82227988 GAGCCAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.39, C:0.24, G:0.26, T:0.11
Consensus pattern (16 bp):
GCCGAAAAGCCGAAAT
Found at i:82227969 original size:24 final size:24
Alignment explanation
Indices: 82227942--82227987 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
82227932 ATCGGCTAAA
*
82227942 GCCGAAAAGTCGAAATGCCGAAAT
1 GCCGAAAAGCCGAAATGCCGAAAT
*
82227966 GCCGAAATGCCGAAATGCCGAA
1 GCCGAAAAGCCGAAATGCCGAA
82227988 GAGCCAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.39, C:0.24, G:0.26, T:0.11
Consensus pattern (24 bp):
GCCGAAAAGCCGAAATGCCGAAAT
Found at i:82227997 original size:24 final size:24
Alignment explanation
Indices: 82227952--82227997 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
82227942 GCCGAAAAGT
*
82227952 CGAAATGCCGAAATGCCGAAATGC
1 CGAAATGCCGAAATGCCAAAATGC
82227976 CGAAATGCCGAAGA-GCCAAAAT
1 CGAAATGCCGAA-ATGCCAAAAT
82227998 TTTATGAACT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 19 0.95
25 1 0.05
ACGTcount: A:0.41, C:0.24, G:0.24, T:0.11
Consensus pattern (24 bp):
CGAAATGCCGAAATGCCAAAATGC
Found at i:82228448 original size:28 final size:27
Alignment explanation
Indices: 82228405--82228519 Score: 126
Period size: 27 Copynumber: 4.3 Consensus size: 27
82228395 TGGAGGAAGC
*
82228405 GTTCTGGTGGCCATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCACAAATATCT
* *
82228432 GTTTCTGATGGCTATGCCACAAATATTT
1 G-TTCTGGTGGCTATGCCACAAATATCT
*
82228460 GTTCTGGTGGCTCTGCCAC-AATATCT
1 GTTCTGGTGGCTATGCCACAAATATCT
* * * *
82228486 ATATCTGGTGACTCTGTCAC-AATATCT
1 GT-TCTGGTGGCTATGCCACAAATATCT
82228513 GTTCTGG
1 GTTCTGG
82228520 GAGCCGTGCT
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
26 12 0.16
27 40 0.53
28 24 0.32
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.36
Consensus pattern (27 bp):
GTTCTGGTGGCTATGCCACAAATATCT
Found at i:82237650 original size:10 final size:10
Alignment explanation
Indices: 82237631--82237691 Score: 59
Period size: 10 Copynumber: 5.9 Consensus size: 10
82237621 ATTTTGGTAT
82237631 ACATGATATG
1 ACATGATATG
*
82237641 ACATGTTATG
1 ACATGATATG
82237651 ACATGATATG
1 ACATGATATG
*
82237661 CACTTGATATG
1 -ACATGATATG
** *
82237672 TTATGAGATG
1 ACATGATATG
82237682 CACATGATAT
1 -ACATGATAT
82237692 ACTCATTATA
Statistics
Matches: 39, Mismatches: 10, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
10 24 0.62
11 15 0.38
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.34
Consensus pattern (10 bp):
ACATGATATG
Found at i:82237796 original size:24 final size:24
Alignment explanation
Indices: 82237739--82237810 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 24
82237729 AGGAAGTGTA
82237739 AAAAG-GGCTTTGCCCCAGTTAATC
1 AAAAGAGGCTTTGCCCCAGTT-ATC
*
82237763 AAAA-AGGGCTTTGCCCCAGTTATT
1 AAAAGA-GGCTTTGCCCCAGTTATC
**
82237787 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGAGGCTTTGCC-CCAGTTAT
82237811 ATAATAAAGC
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
24 17 0.41
25 24 0.59
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATC
Found at i:82238347 original size:22 final size:23
Alignment explanation
Indices: 82238302--82238347 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
82238292 TGGGAATATT
*
82238302 TTTTTCTTCTTAATAACTCTAAA
1 TTTTTCTTCTTAATAACTCAAAA
* *
82238325 TTTTT-TTGTTAATAATTCAAAA
1 TTTTTCTTCTTAATAACTCAAAA
82238347 T
1 T
82238348 GGGCTAGACT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.33, C:0.11, G:0.02, T:0.54
Consensus pattern (23 bp):
TTTTTCTTCTTAATAACTCAAAA
Found at i:82245638 original size:10 final size:10
Alignment explanation
Indices: 82245617--82245683 Score: 73
Period size: 10 Copynumber: 6.6 Consensus size: 10
82245607 CATGAGATTT
82245617 TGATAT-ACA
1 TGATATGACA
82245626 TGATATGACA
1 TGATATGACA
82245636 TGATATGACA
1 TGATATGACA
82245646 TGATATGCACA
1 TGATATG-ACA
* **
82245657 TGACATGTTA
1 TGATATGACA
*
82245667 TGAGATGCACA
1 TGATATG-ACA
82245678 TGATAT
1 TGATAT
82245684 ACCCATTATA
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
9 6 0.12
10 27 0.56
11 15 0.31
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.31
Consensus pattern (10 bp):
TGATATGACA
Found at i:82245659 original size:21 final size:21
Alignment explanation
Indices: 82245617--82245683 Score: 84
Period size: 21 Copynumber: 3.3 Consensus size: 21
82245607 CATGAGATTT
82245617 TGATAT-ACATGATATG-ACA
1 TGATATGACATGATATGCACA
82245636 TGATATGACATGATATGCACA
1 TGATATGACATGATATGCACA
* ** *
82245657 TGACATGTTATGAGATGCACA
1 TGATATGACATGATATGCACA
82245678 TGATAT
1 TGATAT
82245684 ACCCATTATA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
19 6 0.15
20 10 0.24
21 25 0.61
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.31
Consensus pattern (21 bp):
TGATATGACATGATATGCACA
Found at i:82245661 original size:16 final size:15
Alignment explanation
Indices: 82245617--82245683 Score: 64
Period size: 16 Copynumber: 4.4 Consensus size: 15
82245607 CATGAGATTT
*
82245617 TGATAT-ACATGATA
1 TGATATGACATGACA
* *
82245631 TGACATGATATGACA
1 TGATATGACATGACA
82245646 TGATATGCACATGACA
1 TGATATG-ACATGACA
* *
82245662 TGTTATGAGATGCACA
1 TGATATGACATG-ACA
82245678 TGATAT
1 TGATAT
82245684 ACCCATTATA
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
14 5 0.12
15 16 0.38
16 21 0.50
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.31
Consensus pattern (15 bp):
TGATATGACATGACA
Found at i:82246302 original size:22 final size:23
Alignment explanation
Indices: 82246257--82246302 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
82246247 GGGAATATTT
* *
82246257 TTTTTCTTCTTAATAACTCTAAA
1 TTTTTCTTATTAATAACTCAAAA
*
82246280 TTTTTC-TATTAATAATTCAAAA
1 TTTTTCTTATTAATAACTCAAAA
82246302 T
1 T
82246303 GGGCTAGACT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.35, C:0.13, G:0.00, T:0.52
Consensus pattern (23 bp):
TTTTTCTTATTAATAACTCAAAA
Found at i:82250832 original size:39 final size:39
Alignment explanation
Indices: 82250788--82250962 Score: 296
Period size: 39 Copynumber: 4.5 Consensus size: 39
82250778 ATGCAAGACA
82250788 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
82250827 CTGGAAATGTATCTGGGCTAAAGTCCCGTAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
82250866 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
82250905 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
82250944 CTGGAAATGTATCCAGGCT
1 CTGGAAATGTATCCGGGCT
82250963 TCATGCTGGA
Statistics
Matches: 125, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 125 1.00
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.25
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:82250969 original size:24 final size:24
Alignment explanation
Indices: 82250933--82250981 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
82250923 TAAAGTCCCG
*
82250933 CAGGCTTCGTGCTGGAAATGTATC
1 CAGGCTTCATGCTGGAAATGTATC
82250957 CAGGCTTCATGCTGGAAATGTATC
1 CAGGCTTCATGCTGGAAATGTATC
82250981 C
1 C
82250982 GAGCCAAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (24 bp):
CAGGCTTCATGCTGGAAATGTATC
Found at i:82250993 original size:63 final size:63
Alignment explanation
Indices: 82250894--82251020 Score: 218
Period size: 63 Copynumber: 2.0 Consensus size: 63
82250884 CAAAGTCCCG
** * *
82250894 CAGGCTTTGTGCTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATC
1 CAGGCTTCATGCTGGAAATGTATCCGAGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATC
82250957 CAGGCTTCATGCTGGAAATGTATCCGAGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATC
1 CAGGCTTCATGCTGGAAATGTATCCGAGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATC
82251020 C
1 C
82251021 GGGTTAAAGT
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 60 1.00
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.25
Consensus pattern (63 bp):
CAGGCTTCATGCTGGAAATGTATCCGAGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATC
Found at i:82251011 original size:39 final size:39
Alignment explanation
Indices: 82250957--82251048 Score: 139
Period size: 39 Copynumber: 2.4 Consensus size: 39
82250947 GAAATGTATC
*
82250957 CAGGCTTCATGCTGGAAATGTATCCGAGCCAAAGTCCCG
1 CAGGCTTCGTGCTGGAAATGTATCCGAGCCAAAGTCCCG
* **
82250996 CAGGCTTCGTGCTGGAAATGTATCCGGGTTAAAGTCCCG
1 CAGGCTTCGTGCTGGAAATGTATCCGAGCCAAAGTCCCG
*
82251035 CAGGCTTTGTGCTG
1 CAGGCTTCGTGCTG
82251049 ATAATATAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 48 1.00
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (39 bp):
CAGGCTTCGTGCTGGAAATGTATCCGAGCCAAAGTCCCG
Found at i:82251032 original size:102 final size:102
Alignment explanation
Indices: 82250856--82251048 Score: 332
Period size: 102 Copynumber: 1.9 Consensus size: 102
82250846 AAAGTCCCGT
* * *
82250856 AGGCTTCGTGCTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTTGTGCTGGAAATGTATCCGG
1 AGGCTTCATGCTGGAAATATATCCGAGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGG
82250921 GCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCC
66 GCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCC
*
82250958 AGGCTTCATGCTGGAAATGTATCCGAGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGG
1 AGGCTTCATGCTGGAAATATATCCGAGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGG
* *
82251023 GTTAAAGTCCCGCAGGCTTTGTGCTG
66 GCTAAAGTCCCGCAGGCTTCGTGCTG
82251049 ATAATATAAT
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
102 85 1.00
ACGTcount: A:0.21, C:0.24, G:0.30, T:0.25
Consensus pattern (102 bp):
AGGCTTCATGCTGGAAATATATCCGAGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGG
GCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCC
Found at i:82258782 original size:27 final size:27
Alignment explanation
Indices: 82258747--82258802 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
82258737 TAATCCATCT
82258747 TTAAAAATTATAAAAAAC-TATAAAAA
1 TTAAAAATTATAAAAAACTTATAAAAA
* *
82258773 TTAAATAATTATATAAAACTTATTAAAA
1 TTAAA-AATTATAAAAAACTTATAAAAA
82258801 TT
1 TT
82258803 TTAAAAGGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 5 0.19
27 12 0.46
28 9 0.35
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.36
Consensus pattern (27 bp):
TTAAAAATTATAAAAAACTTATAAAAA
Found at i:82258855 original size:16 final size:17
Alignment explanation
Indices: 82258824--82258870 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
82258814 AGCATTTAAT
*
82258824 AATTTCTATAAATTTTC-
1 AATTTTTAT-AATTTTCA
*
82258841 TATTTTTATAATTTTCAA
1 AATTTTTATAATTTTC-A
82258859 AATTTTTATAAT
1 AATTTTTATAAT
82258871 AAATTTATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
16 7 0.28
17 7 0.28
18 11 0.44
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.57
Consensus pattern (17 bp):
AATTTTTATAATTTTCA
Found at i:82259189 original size:10 final size:10
Alignment explanation
Indices: 82259166--82259259 Score: 52
Period size: 10 Copynumber: 9.3 Consensus size: 10
82259156 AATAACTAAA
*
82259166 TTTTATATATT
1 TTTTA-ATAAT
82259177 TTTTAATAAT
1 TTTTAATAAT
82259187 TTTT-ATAAAT
1 TTTTAAT-AAT
*
82259197 TTTT-CTAAT
1 TTTTAATAAT
* *
82259206 TTATTTATCA-
1 TT-TTAATAAT
82259216 TTTTAATAAT
1 TTTTAATAAT
82259226 TTTTATATAACT
1 TTTTA-ATAA-T
* *
82259238 TTCT-ATAAA
1 TTTTAATAAT
*
82259247 TTTTAATACT
1 TTTTAATAAT
82259257 TTT
1 TTT
82259260 ATTTTTCAAA
Statistics
Matches: 65, Mismatches: 11, Indels: 15
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.23
10 35 0.54
11 11 0.17
12 4 0.06
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (10 bp):
TTTTAATAAT
Found at i:82259198 original size:30 final size:30
Alignment explanation
Indices: 82259162--82259234 Score: 78
Period size: 30 Copynumber: 2.4 Consensus size: 30
82259152 TCAAAATAAC
*
82259162 TAAATTTTATATATTT-TTTAATAATTTTTA
1 TAAATTTTATATATTTATTT-ATAATTTTAA
* *
82259192 TAAATTTT-TCTAATTTATTTATCATTTTAA
1 TAAATTTTATAT-ATTTATTTATAATTTTAA
*
82259222 TAATTTTTATATA
1 TAAATTTTATATA
82259235 ACTTTCTATA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
29 2 0.06
30 28 0.80
31 5 0.14
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (30 bp):
TAAATTTTATATATTTATTTATAATTTTAA
Found at i:82259428 original size:9 final size:9
Alignment explanation
Indices: 82259416--82259478 Score: 56
Period size: 9 Copynumber: 6.9 Consensus size: 9
82259406 TATTGAAATT
*
82259416 ATTTTAATA
1 ATTTTTATA
82259425 ATTTTTATA
1 ATTTTTATA
*
82259434 GTTTTTCTATA
1 -ATTTT-TATA
*
82259445 ACTTTTATA
1 ATTTTTATA
*
82259454 ATTTTCA-A
1 ATTTTTATA
82259462 ATTTTTATA
1 ATTTTTATA
*
82259471 ATATTTAT
1 ATTTTTAT
82259479 TTATAATAAT
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
8 7 0.16
9 25 0.58
10 7 0.16
11 4 0.09
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (9 bp):
ATTTTTATA
Found at i:82259445 original size:20 final size:18
Alignment explanation
Indices: 82259416--82259472 Score: 62
Period size: 17 Copynumber: 3.1 Consensus size: 18
82259406 TATTGAAATT
*
82259416 ATTTTAATAATTTTTATA
1 ATTTTCATAATTTTTATA
* *
82259434 GTTTTTCTATAACTTTTATA
1 -ATTTTC-ATAATTTTTATA
82259454 ATTTTCA-AATTTTTATA
1 ATTTTCATAATTTTTATA
82259471 AT
1 AT
82259473 ATTTATTTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
17 11 0.34
18 1 0.03
19 9 0.28
20 11 0.34
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (18 bp):
ATTTTCATAATTTTTATA
Found at i:82261557 original size:43 final size:43
Alignment explanation
Indices: 82261475--82261557 Score: 96
Period size: 43 Copynumber: 1.9 Consensus size: 43
82261465 TGTAGGACAA
* * * **
82261475 TGTCTGGGACATTGGCATCGTTAATCGATTTCATATAAGACCC
1 TGTCTGGGACAATGCCATCGATAATCGATAACATATAAGACCC
*
82261518 TGTCTGGGACAATGCCATCGAT-ATACGATAACATGTAAGA
1 TGTCTGGGACAATGCCATCGATAAT-CGATAACATATAAGA
82261558 TCATATTTGG
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
42 2 0.06
43 31 0.94
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (43 bp):
TGTCTGGGACAATGCCATCGATAATCGATAACATATAAGACCC
Found at i:82265048 original size:38 final size:38
Alignment explanation
Indices: 82264997--82265104 Score: 180
Period size: 38 Copynumber: 2.8 Consensus size: 38
82264987 GTAATCGGGT
82264997 TAAATCCCGCAGGCTTCGTGCTGGTATTATATCCTGGA
1 TAAATCCCGCAGGCTTCGTGCTGGTATTATATCCTGGA
*
82265035 TAAATCCCGCAGGCTTCGTGCTGGTATTATATCCTGGT
1 TAAATCCCGCAGGCTTCGTGCTGGTATTATATCCTGGA
* * *
82265073 TAAATCCCGCAGGCCTAGTGTTGGTATTATAT
1 TAAATCCCGCAGGCTTCGTGCTGGTATTATAT
82265105 TCGGGCCTTC
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 66 1.00
ACGTcount: A:0.21, C:0.22, G:0.23, T:0.33
Consensus pattern (38 bp):
TAAATCCCGCAGGCTTCGTGCTGGTATTATATCCTGGA
Found at i:82268794 original size:43 final size:43
Alignment explanation
Indices: 82268733--82268866 Score: 214
Period size: 43 Copynumber: 3.1 Consensus size: 43
82268723 TGGGCTATTA
*
82268733 CAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAG
1 CAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAG
* * *
82268776 CAGGCTTCGTACCGGTGATGTGTATTTGGGCCTTCGTGCCTAT
1 CAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAG
* *
82268819 CAGGCTTCATGCCGATGATGTGTATTCGGGCCTTCGTGCCTAG
1 CAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAG
82268862 CAGGC
1 CAGGC
82268867 GTAATGCCGG
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 82 1.00
ACGTcount: A:0.13, C:0.25, G:0.32, T:0.31
Consensus pattern (43 bp):
CAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAG
Found at i:82282002 original size:85 final size:85
Alignment explanation
Indices: 82281859--82282037 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
82281849 GGCCGGCCAT
82281859 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
82281924 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
82281944 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
82282009 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
82282029 GGGCATGGG
1 GAGCATGGG
82282038 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:82284282 original size:47 final size:47
Alignment explanation
Indices: 82284228--82284737 Score: 777
Period size: 47 Copynumber: 10.6 Consensus size: 47
82284218 GTATATTTGA
* *
82284228 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
82284275 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
* *
82284324 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
82284371 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
* *
82284420 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
82284467 ATGAATGTGAAAGTGTATATATATATGTGAAAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG----TATATATGTGATAAGGCCTAATGGCCGATGTG
*
82284518 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
82284565 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
*
82284614 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* * * * * *
82284661 ATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
82284708 ATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
82284738 TCCCGAAGGG
Statistics
Matches: 427, Mismatches: 26, Indels: 20
0.90 0.05 0.04
Matches are distributed among these distances:
47 247 0.58
49 136 0.32
51 44 0.10
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:82284336 original size:96 final size:96
Alignment explanation
Indices: 82284228--82284737 Score: 853
Period size: 96 Copynumber: 5.3 Consensus size: 96
82284218 GTATATTTGA
82284228 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
82284293 ATATATGTGATAAGGCCTAATGGCCGATGTG
66 ATATATGTGATAAGGCCTAATGGCCGATGTG
82284324 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
82284389 ATATATGTGATAAGGCCTAATGGCCGATGTG
66 ATATATGTGATAAGGCCTAATGGCCGATGTG
82284420 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--T
*
82284485 ATATATATGTGAAAAGGCCTAATGGCCGATGTG
64 ATATATATGTGATAAGGCCTAATGGCCGATGTG
* * *
82284518 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
82284583 ATATATGTGATAAGGCCTAATGGCCGATGTG
66 ATATATGTGATAAGGCCTAATGGCCGATGTG
* * *
82284614 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--T
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
* * * * * *
82284677 ATATATGTGACAGGGCCGAGTGGCCAACGTG
66 ATATATGTGATAAGGCCTAATGGCCGATGTG
* *
82284708 ATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
82284738 TCCCGAAGGG
Statistics
Matches: 399, Mismatches: 13, Indels: 6
0.95 0.03 0.01
Matches are distributed among these distances:
94 54 0.14
96 253 0.63
98 92 0.23
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (96 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
ATATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:82284566 original size:194 final size:192
Alignment explanation
Indices: 82284228--82284737 Score: 853
Period size: 194 Copynumber: 2.7 Consensus size: 192
82284218 GTATATTTGA
82284228 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
*
82284293 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
66 ATATATGTGAAAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
*
82284358 AATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
131 AATAGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
82284420 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--T
82284485 ATATATATGTGAAAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
64 ATATATATGTGAAAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
* *
82284550 CTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
129 CGAATAGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
* * *
82284614 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--T
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
* * * * * * * *
82284677 ATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 ATATATGTGAAAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
82284738 TCCCGAAGGG
Statistics
Matches: 301, Mismatches: 15, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
190 54 0.18
192 62 0.21
194 185 0.61
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (192 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
ATATATGTGAAAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
AATAGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:82288335 original size:27 final size:27
Alignment explanation
Indices: 82288283--82288372 Score: 110
Period size: 27 Copynumber: 3.3 Consensus size: 27
82288273 CCTTATGTGA
*
82288283 TAAAATGACCAAAATA-CCCTATTAGGC
1 TAAAATGACCAAAATACCCCTA-TAGGG
*
82288310 TAAAAAGACCAAAATACCCCTATAGGG
1 TAAAATGACCAAAATACCCCTATAGGG
* * * *
82288337 TAGAATGACCGAAATGCCCCTGTAGGG
1 TAAAATGACCAAAATACCCCTATAGGG
82288364 TAAAATGAC
1 TAAAATGAC
82288373 TGTAATACCT
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
27 49 0.91
28 5 0.09
ACGTcount: A:0.42, C:0.21, G:0.18, T:0.19
Consensus pattern (27 bp):
TAAAATGACCAAAATACCCCTATAGGG
Found at i:82288477 original size:23 final size:23
Alignment explanation
Indices: 82288434--82288483 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
82288424 CTGTATTTGA
82288434 GCATGCCATGTTATATGTATGTT
1 GCATGCCATGTTATATGTATGTT
82288457 GCAT-CCATGTATAATAT-TATGTT
1 GCATGCCATGT-T-ATATGTATGTT
82288480 GCAT
1 GCAT
82288484 TGCATGAGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.24
23 15 0.60
24 4 0.16
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (23 bp):
GCATGCCATGTTATATGTATGTT
Found at i:82297283 original size:68 final size:65
Alignment explanation
Indices: 82297218--82297425 Score: 185
Period size: 67 Copynumber: 3.2 Consensus size: 65
82297208 CATCATGTGT
82297218 ACAAGAGAGCTACAAGATATTATGATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTAC-AGATA-TAT-ATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATG
82297283 TAG
63 TAG
** * * * * * * *
82297286 ACAAGAGAGCTAC-GGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATG
1 ACAAGAGAGCTACAGATATATATGTAGCTAGGTCACATGGGT-GATACTA-TG-TGTACACCATG
82297350 TAG
63 TAG
* * *
82297353 ACAAGAGAGCTACGAGATA-A-ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT
1 ACAAGAGAGCTAC-AGATATATA-TGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGT
82297414 -G
64 AG
82297415 TACAAGAGAGC
1 -ACAAGAGAGC
82297426 CGAACTATAT
Statistics
Matches: 113, Mismatches: 20, Indels: 19
0.74 0.13 0.12
Matches are distributed among these distances:
62 1 0.01
63 19 0.17
64 20 0.18
65 11 0.10
66 18 0.16
67 26 0.23
68 16 0.14
69 2 0.02
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.23
Consensus pattern (65 bp):
ACAAGAGAGCTACAGATATATATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTAG
Found at i:82300561 original size:40 final size:40
Alignment explanation
Indices: 82300460--82300650 Score: 242
Period size: 40 Copynumber: 4.8 Consensus size: 40
82300450 TGGATGATAA
* * * * **
82300460 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
82300500 CCGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
82300539 CCAGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* * *
82300579 CCGGGCTAAGTCCCAAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
82300619 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
82300651 AGCTATATCC
Statistics
Matches: 132, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 32 0.24
40 98 0.74
41 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:82306777 original size:36 final size:36
Alignment explanation
Indices: 82306736--82306842 Score: 196
Period size: 36 Copynumber: 3.0 Consensus size: 36
82306726 AATTGGTCAT
82306736 GGAAGGATTGTAGGAGGGAGTTAAGGAGATATGTGA
1 GGAAGGATTGTAGGAGGGAGTTAAGGAGATATGTGA
*
82306772 GGAAGGATTGCAGGAGGGAGTTAAGGAGATATGTGA
1 GGAAGGATTGTAGGAGGGAGTTAAGGAGATATGTGA
*
82306808 GGAAGGATTGTAGGAGGGAGTTAAGGGGATATGTG
1 GGAAGGATTGTAGGAGGGAGTTAAGGAGATATGTG
82306843 GGCCTACATA
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 68 1.00
ACGTcount: A:0.32, C:0.01, G:0.46, T:0.21
Consensus pattern (36 bp):
GGAAGGATTGTAGGAGGGAGTTAAGGAGATATGTGA
Found at i:82311733 original size:40 final size:39
Alignment explanation
Indices: 82311669--82311851 Score: 192
Period size: 40 Copynumber: 4.6 Consensus size: 39
82311659 GCTACTCGTT
* *
82311669 CAAATGCCTTCAGGTCATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGTTATAGTAACTCGCA
*
82311709 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGG-TTATAGTAACTCGCA
* * *
82311749 CAAATGCCTTCGGGCTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
82311788 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
82311829 CAAA-GCCTTCGGACTTAGCCCGG
1 CAAATGCCTTCGGACTTAGCCCGG
82311852 ACATCATTCG
Statistics
Matches: 121, Mismatches: 16, Indels: 13
0.81 0.11 0.09
Matches are distributed among these distances:
39 44 0.36
40 66 0.55
41 11 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:82311780 original size:79 final size:81
Alignment explanation
Indices: 82311669--82311852 Score: 216
Period size: 79 Copynumber: 2.3 Consensus size: 81
82311659 GCTACTCGTT
* * *
82311669 CAAATGCCTTCAGGTCATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTC-GGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
82311732 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* * **
82311749 CAAATGCCTTCGGGCTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
82311813 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
82311829 CAAA-GCCTTCGGACTTAGCCCGGA
1 CAAATGCCTTCGGACTTAGCCCGGA
82311853 CATCATTCGA
Statistics
Matches: 90, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
78 3 0.03
79 67 0.74
80 20 0.22
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:82318891 original size:39 final size:40
Alignment explanation
Indices: 82318774--82318958 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
82318764 GCTACTCGTT
* * *
82318774 CAAATGCCTTCGGGTCATGGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
82318814 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
82318854 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
82318893 CAAATGCCTTC-AGATCTTAGTCCAGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCA
82318934 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
82318959 CATCATTCGA
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 1 0.01
39 33 0.27
40 74 0.61
41 14 0.11
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:82320540 original size:21 final size:21
Alignment explanation
Indices: 82320514--82320555 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
82320504 TTAATGTATG
*
82320514 ATTACCAGTGGATTATTTTGA
1 ATTACCAGTGCATTATTTTGA
*
82320535 ATTACCTGTGCATTATTTTGA
1 ATTACCAGTGCATTATTTTGA
82320556 GATATTTTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.26, C:0.12, G:0.17, T:0.45
Consensus pattern (21 bp):
ATTACCAGTGCATTATTTTGA
Found at i:82332439 original size:48 final size:48
Alignment explanation
Indices: 82332383--82332610 Score: 225
Period size: 48 Copynumber: 4.9 Consensus size: 48
82332373 CATATGGTAG
** *
82332383 GATGCCAATGCCATATCCTGGATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
* * * ** **
82332431 GATGCCAATGCCATACCCCAAACATAGTCTTACATGGGATCGTAGGTC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
* *
82332479 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATTTC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
* ** * *
82332527 GATGCC---G--ATAGCCCAG-CTATGGTCTTACATGAAATTACATATT
1 GATGCCAATGCCATATCCCAGAC-ATGGTCTTACATGGGATCACATATC
* * *
82332570 GATGCCAAAGCCATGTCCCAGACATGGTCTTACATAGGATC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATC
82332611 GTACATAACC
Statistics
Matches: 142, Mismatches: 31, Indels: 14
0.76 0.17 0.07
Matches are distributed among these distances:
42 1 0.01
43 33 0.23
45 1 0.01
46 1 0.01
48 105 0.74
49 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (48 bp):
GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:82333521 original size:23 final size:23
Alignment explanation
Indices: 82333491--82333537 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
82333481 ATTAACCAAA
*
82333491 TGACAAAAATACCCTTAGGGCCT
1 TGACAAAAATACCCTTAGAGCCT
*
82333514 TGACAAAAATTCCCTTAGAGCCT
1 TGACAAAAATACCCTTAGAGCCT
82333537 T
1 T
82333538 TCTTTCTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.26
Consensus pattern (23 bp):
TGACAAAAATACCCTTAGAGCCT
Found at i:82342772 original size:29 final size:28
Alignment explanation
Indices: 82342736--82342813 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
82342726 TCATGAGATT
82342736 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
82342766 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
82342793 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
82342814 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:82343031 original size:174 final size:174
Alignment explanation
Indices: 82342766--82343093 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
82342756 AAATTGTACA
*
82342766 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
82342831 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
82342896 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
82342940 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
82343005 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
82343070 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
82343094 ACCTTGAGTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:82350853 original size:29 final size:28
Alignment explanation
Indices: 82350817--82350894 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
82350807 TCATGAGATT
82350817 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
82350847 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
82350874 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
82350895 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:82351112 original size:174 final size:174
Alignment explanation
Indices: 82350847--82351174 Score: 584
Period size: 174 Copynumber: 1.9 Consensus size: 174
82350837 AAATTGTACA
*
82350847 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* * *
82350912 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTACGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
*
82350977 TTTTGGATAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
82351021 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
82351086 TGTACGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTACGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
82351151 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
82351175 ACCTTGAGTT
Statistics
Matches: 146, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 146 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTACGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:82354192 original size:17 final size:17
Alignment explanation
Indices: 82354160--82354197 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
82354150 AAACTGATGC
82354160 ATAAAACTGTTAATACAG
1 ATAAAACTGTTAATAC-G
*
82354178 ATAAAAGTG-TAATACG
1 ATAAAACTGTTAATACG
82354194 ATAA
1 ATAA
82354198 TGAGCACTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 5 0.26
17 6 0.32
18 8 0.42
ACGTcount: A:0.53, C:0.08, G:0.13, T:0.26
Consensus pattern (17 bp):
ATAAAACTGTTAATACG
Found at i:82373162 original size:48 final size:48
Alignment explanation
Indices: 82372834--82373151 Score: 483
Period size: 48 Copynumber: 6.6 Consensus size: 48
82372824 ATAAGGTCCC
*
82372834 GTGTAAGACCATGTCTGGGACATGGCATCGGTGTTGATATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
*
82372882 GTGCAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
* * *
82372930 GTGTAAGGCCATGTCAGGGACATGACATCGGCGTTGATATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
* *
82372978 GTGTAAGACCATGTCTGGGACATGGCAACAGCGTTGATATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
* *
82373026 GTGTAAGACCATGTCTAGGACATGACATCGGCGTTGATATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
*** * *
82373074 GTGTAAGACCATGTCTAAAACATGGCATCGTCGTTGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
* * *
82373122 GTATAAGACCATGTTTGGGACATGGTATCG
1 GTGTAAGACCATGTCTGGGACATGGCATCG
82373152 ACACTAATAT
Statistics
Matches: 244, Mismatches: 26, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 244 1.00
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.25
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
Found at i:82376337 original size:47 final size:47
Alignment explanation
Indices: 82376284--82376409 Score: 162
Period size: 47 Copynumber: 2.7 Consensus size: 47
82376274 GAATAATACA
* * * *
82376284 TTGATTTGGTTACGGGCCATGCTATAGGTATTCAGAGAGGAGTTACT
1 TTGATTTGGTTACGGGCCATGGTATAGGTACTCAGAGAGAAGTTACC
* * * *
82376331 TTGATTTGGATACGGGCCATGGTATAGGTACTCCGGGATAAGTTACC
1 TTGATTTGGTTACGGGCCATGGTATAGGTACTCAGAGAGAAGTTACC
* *
82376378 TTGATTTGGTTACGAGCCGTGGTATAGGTACT
1 TTGATTTGGTTACGGGCCATGGTATAGGTACT
82376410 TATCAATTGT
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.22, C:0.14, G:0.30, T:0.33
Consensus pattern (47 bp):
TTGATTTGGTTACGGGCCATGGTATAGGTACTCAGAGAGAAGTTACC
Found at i:82377743 original size:13 final size:13
Alignment explanation
Indices: 82377725--82377759 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
82377715 AATGTCACAC
82377725 GGCCGTGTGAACA
1 GGCCGTGTGAACA
82377738 GGCCGTGTGAACA
1 GGCCGTGTGAACA
82377751 GGCCGTGTG
1 GGCCGTGTG
82377760 CCTCACACTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.17, C:0.23, G:0.43, T:0.17
Consensus pattern (13 bp):
GGCCGTGTGAACA
Found at i:82378956 original size:43 final size:41
Alignment explanation
Indices: 82378854--82379033 Score: 141
Period size: 43 Copynumber: 4.2 Consensus size: 41
82378844 CAACGCCAAA
* *
82378854 GTCCTAGACGTGGTCTTACATGTAATCAAATATCGATGCCAGG
1 GTCCTAGAC-AGGTCTTACATGTAATCAAATATCGATGCCA-T
*
82378897 GTCGC-AGACGTGGTCTTACATGTAATCAAATATCGATGCCACT
1 GTC-CTAGAC-AGGTCTTACATGTAATCAAATATCGATGCCA-T
* * * * *
82378940 GTCCTAGACAGAGTCTTTCGTGAAATCAAATA-CGATACTGAT
1 GTCCTAGACAG-GTCTTACATGTAATCAAATATCGATGC-CAT
* * *
82378982 GTCCCAGACATGGTCTTACATGTAAATCTAGA-ATCGACGCCAAT
1 GTCCTAGACA-GGTCTTACATGT-AATC-AAATATCGATGCC-AT
82379026 GTCCTAGA
1 GTCCTAGA
82379034 TGTGGTCTTA
Statistics
Matches: 111, Mismatches: 17, Indels: 17
0.77 0.12 0.12
Matches are distributed among these distances:
42 25 0.23
43 70 0.63
44 16 0.14
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (41 bp):
GTCCTAGACAGGTCTTACATGTAATCAAATATCGATGCCAT
Found at i:82379042 original size:86 final size:86
Alignment explanation
Indices: 82378846--82379059 Score: 211
Period size: 86 Copynumber: 2.5 Consensus size: 86
82378836 AGCTTGTACA
* * * * * *
82378846 ACGCCAAAGTCCTAGACGTGGTCTTACATGTAATCAAATATCGATGCCAGGGTCGCAGACGTGGT
1 ACGCCAATGTCCTAGAAGTGGTCTTACATGAAATCAAATATCGATACCAGGGTCCCAGACATGGT
82378911 CTTACATGTAATCAAATATCG
66 CTTACATGTAATCAAATATCG
* * * * * * *
82378932 ATGCCACTGTCCTAGACAG-AGTCTTTCGTGAAATCAAATA-CGATA-CTGATGTCCCAGACATG
1 ACGCCAATGTCCTAGA-AGTGGTCTTACATGAAATCAAATATCGATACCAG-GGTCCCAGACATG
*
82378994 GTCTTACATGTAAATCTAGA-ATCG
64 GTCTTACATGT-AATC-AAATATCG
* * *
82379018 ACGCCAATGTCCTAGATGTGGTCTTACACGAAATCACATATC
1 ACGCCAATGTCCTAGAAGTGGTCTTACATGAAATCAAATATC
82379060 AGAATCCTAT
Statistics
Matches: 100, Mismatches: 22, Indels: 11
0.75 0.17 0.08
Matches are distributed among these distances:
84 2 0.02
85 26 0.26
86 68 0.68
87 4 0.04
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (86 bp):
ACGCCAATGTCCTAGAAGTGGTCTTACATGAAATCAAATATCGATACCAGGGTCCCAGACATGGT
CTTACATGTAATCAAATATCG
Found at i:82382684 original size:17 final size:18
Alignment explanation
Indices: 82382662--82382695 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
82382652 CACATTGAAG
82382662 TGTTTT-AGTGAAAACCT
1 TGTTTTCAGTGAAAACCT
*
82382679 TGTTTTCATTGAAAACC
1 TGTTTTCAGTGAAAACC
82382696 CTTCCTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCT
Found at i:82383914 original size:57 final size:56
Alignment explanation
Indices: 82383804--82383914 Score: 125
Period size: 57 Copynumber: 2.0 Consensus size: 56
82383794 TGCCTATATA
* * ** * *
82383804 TGACCCACTAGGCCCAATCTCGTTCATATGGCCTGTCAGACCCATTCATATTTATG
1 TGACCCACTAGGCCCAATCACATTCATATGGCCACTCAGACCCAATCACATTTATG
* *
82383860 TGACCCATTAGGCCCAAATCACATTCATATGGCCACT-AGGCCCAAATCACATTTA
1 TGACCCACTAGGCCC-AATCACATTCATATGGCCACTCAGACCC-AATCACATTTA
82383915 CAGTCATGCT
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
56 19 0.42
57 26 0.58
ACGTcount: A:0.28, C:0.31, G:0.14, T:0.27
Consensus pattern (56 bp):
TGACCCACTAGGCCCAATCACATTCATATGGCCACTCAGACCCAATCACATTTATG
Found at i:82384170 original size:16 final size:16
Alignment explanation
Indices: 82384134--82384170 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
82384124 AAAATTTCAA
82384134 CTTTTCGGCATTTTAG
1 CTTTTCGGCATTTTAG
* *
82384150 ATTTTCGGCATTTTGG
1 CTTTTCGGCATTTTAG
82384166 CTTTT
1 CTTTT
82384171 GCTGATCTAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.11, C:0.16, G:0.19, T:0.54
Consensus pattern (16 bp):
CTTTTCGGCATTTTAG
Found at i:82388887 original size:18 final size:20
Alignment explanation
Indices: 82388852--82388899 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 20
82388842 CCTGCCCACG
82388852 ACCCCTTGGCTGCAGCTGACC
1 ACCCCTTGGCTG-AGCTGACC
*
82388873 ACCCCTTGG-TG-GCTGAGC
1 ACCCCTTGGCTGAGCTGACC
82388891 ACCACCTTG
1 ACC-CCTTG
82388900 ACCCACTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 9 0.36
19 5 0.20
20 2 0.08
21 9 0.36
ACGTcount: A:0.15, C:0.40, G:0.25, T:0.21
Consensus pattern (20 bp):
ACCCCTTGGCTGAGCTGACC
Found at i:82391569 original size:29 final size:28
Alignment explanation
Indices: 82391536--82391599 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 28
82391526 AGGCCTATTT
*
82391536 ACATTTATGTCGCCCA-TAAGGCCCAAATC
1 ACATTTATAT-GCCCACT-AGGCCCAAATC
* *
82391565 ACATTCATATGGCCACTAGGCCCAAATC
1 ACATTTATATGCCCACTAGGCCCAAATC
82391593 ACATTTA
1 ACATTTA
82391600 CAGTCGTGCT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
28 21 0.70
29 9 0.30
ACGTcount: A:0.33, C:0.30, G:0.12, T:0.25
Consensus pattern (28 bp):
ACATTTATATGCCCACTAGGCCCAAATC
Found at i:82391692 original size:18 final size:19
Alignment explanation
Indices: 82391669--82391706 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
82391659 ATGGGCACGA
82391669 TAGCCCA-TCGGGCCCATT
1 TAGCCCACTCGGGCCCATT
*
82391687 TAGCCCACTCTGGCCCATT
1 TAGCCCACTCGGGCCCATT
82391706 T
1 T
82391707 GGCCAATTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.16, C:0.39, G:0.18, T:0.26
Consensus pattern (19 bp):
TAGCCCACTCGGGCCCATT
Found at i:82392828 original size:28 final size:29
Alignment explanation
Indices: 82392778--82392851 Score: 89
Period size: 28 Copynumber: 2.6 Consensus size: 29
82392768 AACCCTACAT
* *
82392778 ACATGCATATGGCCCACTT-GGCCCAA-TC
1 ACATTCATATAGCCCA-TTAGGCCCAATTC
* *
82392806 TCATTTATATAGCCCATTAGGCCCAATTC
1 ACATTCATATAGCCCATTAGGCCCAATTC
82392835 ACATTCATATAGCCCAT
1 ACATTCATATAGCCCAT
82392852 GTAACACCCC
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
27 2 0.05
28 19 0.50
29 17 0.45
ACGTcount: A:0.28, C:0.31, G:0.12, T:0.28
Consensus pattern (29 bp):
ACATTCATATAGCCCATTAGGCCCAATTC
Found at i:82393881 original size:47 final size:47
Alignment explanation
Indices: 82393810--82394453 Score: 1063
Period size: 47 Copynumber: 13.6 Consensus size: 47
82393800 CCCTTCGGGA
* * * * * *
82393810 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82393857 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82393904 CTTATCACATATATAAACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82393951 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82393998 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82394047 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82394094 CTTATCACATATGTACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82394141 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82394188 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82394237 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82394284 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82394333 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82394380 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82394427 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
82394454 TATTCAAATA
Statistics
Matches: 563, Mismatches: 28, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
47 429 0.76
49 134 0.24
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:82394067 original size:143 final size:141
Alignment explanation
Indices: 82393810--82394453 Score: 1063
Period size: 143 Copynumber: 4.5 Consensus size: 141
82393800 CCCTTCGGGA
* * * * * * *
82393810 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
82393875 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAAACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
82393940 GGCCATTAGGC
131 GGCCATTAGGC
82393951 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
82394016 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
82394081 TCGGCCATTAGGC
129 TCGGCCATTAGGC
* *
82394094 CTTATCACATATGTACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
82394159 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
* *
82394224 TTGGCCATTCGGC
129 TCGGCCATTAGGC
*
82394237 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
82394302 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
* *
82394367 TTGGCCATTCGGC
129 TCGGCCATTAGGC
82394380 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
82394445 TTTCACATT
66 TTTCACATT
82394454 TATTCAAATA
Statistics
Matches: 475, Mismatches: 22, Indels: 12
0.93 0.04 0.02
Matches are distributed among these distances:
141 112 0.24
143 318 0.67
145 45 0.09
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:82394144 original size:190 final size:190
Alignment explanation
Indices: 82393810--82394453 Score: 1116
Period size: 190 Copynumber: 3.4 Consensus size: 190
82393800 CCCTTCGGGA
* * * *
82393810 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
82393873 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAAACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
82393938 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82393998 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
82394063 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATGTACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
82394128 TCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82394188 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
82394253 ACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
* * * *
82394318 CATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
129 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82394380 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
82394443 ACTTTCACATT
66 ACTTTCACATT
82394454 TATTCAAATA
Statistics
Matches: 436, Mismatches: 16, Indels: 6
0.95 0.03 0.01
Matches are distributed among these distances:
188 10 0.02
189 1 0.00
190 337 0.77
192 88 0.20
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (190 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:82394342 original size:22 final size:22
Alignment explanation
Indices: 82394314--82394389 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
82394304 TTTCACATTC
82394314 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
82394336 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
82394360 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
82394383 ATCACAT
1 ATCACAT
82394390 ATATACACTT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 18 0.46
23 5 0.13
24 5 0.13
25 11 0.28
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:82398358 original size:40 final size:40
Alignment explanation
Indices: 82398269--82398825 Score: 830
Period size: 40 Copynumber: 14.0 Consensus size: 40
82398259 GAATACACAT
* *
82398269 CACCAGCATGAATGCTCTTCGAGACTTAGCCCGG--ATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * *
82398307 CACCAACTCGAATGCTCTTCGGGACCTAGCCCAGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
82398347 CACCAGCTCGAATGCTCTTCGGGACTTAGCCCGGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * *
82398387 CACTAGCATGAATGCTCTTCGGGACTTAGCCCTGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
82398427 CACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
82398467 CACCAACTCGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
82398507 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
82398547 CACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
82398587 CACCAACTCGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
82398627 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
82398667 CACTAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
82398707 CACTAGCACGAATGATCCTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
82398747 CACCAACTCGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
82398787 CACCAGCACGAATGCTCTTTGGGACTTAGCCCGGATATA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
82398826 TCACTCTCAA
Statistics
Matches: 468, Mismatches: 49, Indels: 2
0.90 0.09 0.00
Matches are distributed among these distances:
38 28 0.06
40 440 0.94
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:82400312 original size:47 final size:47
Alignment explanation
Indices: 82400241--82400931 Score: 1078
Period size: 47 Copynumber: 14.6 Consensus size: 47
82400231 CCCTTCGGGA
* * * * * *
82400241 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGG-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * * * *
82400287 CTCTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CT-TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82400335 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82400382 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82400429 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
82400476 CTTATGACATATATATACACTTTCACATTCATCACATTGGCCATTTGGC
1 CTTAT--CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82400525 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82400572 CTTATCACATATGTACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82400619 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82400666 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82400715 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82400762 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
82400811 CTTATAACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82400858 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82400905 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
82400932 TATTCAAATA
Statistics
Matches: 607, Mismatches: 30, Indels: 15
0.93 0.05 0.02
Matches are distributed among these distances:
46 2 0.00
47 472 0.78
48 1 0.00
49 132 0.22
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:82400548 original size:143 final size:141
Alignment explanation
Indices: 82400241--82400931 Score: 1096
Period size: 143 Copynumber: 4.9 Consensus size: 141
82400231 CCCTTCGGGA
* * * * *
82400241 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGG-CTCTATCACATTTATACA
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCT-TATCACATATATACA
* * * * * *
82400305 CTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACACTTTCACATTCATCACAT
65 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
82400370 CGGCCATTAGGC
130 CGGCCATTAGGC
* *
82400382 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
*
82400447 TTTCACATTCATCACATCGGCCATTAGGCCTTATGACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTAT--CACATATATACACTTTCACATTCATCACA
* *
82400512 TTGGCCATTTGGC
129 TCGGCCATTAGGC
* * *
82400525 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATGTACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
* *
82400590 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
82400655 GGCCATTAGGC
131 GGCCATTAGGC
82400666 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
82400731 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
* *
82400796 CATTGGCCATTCGGC
127 CATCGGCCATTAGGC
*
82400811 CTTATAACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
82400876 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
82400932 TATTCAAATA
Statistics
Matches: 513, Mismatches: 30, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
141 148 0.29
142 2 0.00
143 320 0.62
145 43 0.08
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:82400562 original size:190 final size:190
Alignment explanation
Indices: 82400241--82400931 Score: 1122
Period size: 190 Copynumber: 3.6 Consensus size: 190
82400231 CCCTTCGGGA
* * * * * *
82400241 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGG-CTCTATCACAT-T-TATA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT-TATCACATATATATA
* * * *
82400303 CACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACACTTTCACATTCATCAC
65 CACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCAC
82400368 ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
130 ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82400429 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATGACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
82400494 ACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
* *
82400559 TCGGCCATTAGGCCTTATCACATATGTACACTTTCACATTCATCACATCGGCTATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82400619 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
82400684 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
* *
82400749 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
131 TCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
82400811 CTTATAACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* *
82400874 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATT
82400932 TATTCAAATA
Statistics
Matches: 471, Mismatches: 27, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
188 47 0.10
189 3 0.01
190 335 0.71
192 86 0.18
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (190 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:82401735 original size:28 final size:29
Alignment explanation
Indices: 82401685--82401758 Score: 89
Period size: 28 Copynumber: 2.6 Consensus size: 29
82401675 AACCCTACAT
* *
82401685 ACATGCATATGGCCCACTT-GGCCCAA-TC
1 ACATTCATATAGCCCA-TTAGGCCCAATTC
* *
82401713 TCATTTATATAGCCCATTAGGCCCAATTC
1 ACATTCATATAGCCCATTAGGCCCAATTC
82401742 ACATTCATATAGCCCAT
1 ACATTCATATAGCCCAT
82401759 GTAACACCCC
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
27 2 0.05
28 19 0.50
29 17 0.45
ACGTcount: A:0.28, C:0.31, G:0.12, T:0.28
Consensus pattern (29 bp):
ACATTCATATAGCCCATTAGGCCCAATTC
Found at i:82402788 original size:47 final size:47
Alignment explanation
Indices: 82402717--82403360 Score: 1056
Period size: 47 Copynumber: 13.6 Consensus size: 47
82402707 CCCTTCGGGA
* * * * * *
82402717 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82402764 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82402811 CTTATCACATATATAAACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82402858 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82402905 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82402954 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82403001 CTTATCACATATGTACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82403048 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82403095 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82403144 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82403191 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82403240 CTTATCACATATATACACTTTCACATTCATCACAAT-GGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCAC-ATCGGCCATTAGGC
82403287 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82403334 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
82403361 TATTCAAATA
Statistics
Matches: 562, Mismatches: 27, Indels: 16
0.93 0.04 0.03
Matches are distributed among these distances:
46 2 0.00
47 424 0.75
48 2 0.00
49 134 0.24
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:82402974 original size:143 final size:141
Alignment explanation
Indices: 82402717--82403360 Score: 1056
Period size: 143 Copynumber: 4.5 Consensus size: 141
82402707 CCCTTCGGGA
* * * * * * *
82402717 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
82402782 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAAACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
82402847 GGCCATTAGGC
131 GGCCATTAGGC
82402858 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
82402923 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
82402988 TCGGCCATTAGGC
129 TCGGCCATTAGGC
* *
82403001 CTTATCACATATGTACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
82403066 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
* *
82403131 TTGGCCATTCGGC
129 TCGGCCATTAGGC
*
82403144 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
82403209 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC-
*
82403274 AT-GGCCATTCGGC
128 ATCGGCCATTAGGC
82403287 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
82403352 TTTCACATT
66 TTTCACATT
82403361 TATTCAAATA
Statistics
Matches: 474, Mismatches: 22, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
141 112 0.24
143 315 0.66
144 2 0.00
145 45 0.09
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:82403051 original size:190 final size:190
Alignment explanation
Indices: 82402717--82403360 Score: 1109
Period size: 190 Copynumber: 3.4 Consensus size: 190
82402707 CCCTTCGGGA
* * * *
82402717 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
82402780 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAAACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
82402845 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82402905 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
82402970 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATGTACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
82403035 TCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82403095 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
82403160 ACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
* * *
82403225 CATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACAAT-GGCCATTCGGC
129 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC-ATCGGCCATTAGGC
* *
82403287 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
82403350 ACTTTCACATT
66 ACTTTCACATT
82403361 TATTCAAATA
Statistics
Matches: 436, Mismatches: 15, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
188 10 0.02
189 1 0.00
190 337 0.77
192 86 0.20
193 2 0.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (190 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:82406359 original size:15 final size:16
Alignment explanation
Indices: 82406339--82406368 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
82406329 AAACTTTCGG
82406339 GTTTTT-GGCATTTCA
1 GTTTTTCGGCATTTCA
82406354 GTTTTTCGGCATTTC
1 GTTTTTCGGCATTTC
82406369 GACACTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.10, C:0.17, G:0.20, T:0.53
Consensus pattern (16 bp):
GTTTTTCGGCATTTCA
Found at i:82410287 original size:29 final size:28
Alignment explanation
Indices: 82410209--82410310 Score: 107
Period size: 28 Copynumber: 3.6 Consensus size: 28
82410199 AACCCTACAT
*
82410209 ACATGCATATGGCCCACTT-GGCCCAATC
1 ACATTCATATGGCCCA-TTAGGCCCAATC
* * * *
82410237 TCATTCATATAGCTCATCAGGCCCAATTC
1 ACATTCATATGGCCCATTAGGCCCAA-TC
*
82410266 ACATTCATATGGCCCATTAGGCCTAATC
1 ACATTCATATGGCCCATTAGGCCCAATC
* *
82410294 TCATTTATATGGCCCAT
1 ACATTCATATGGCCCAT
82410311 CCGGCCTTAA
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
27 1 0.02
28 36 0.60
29 23 0.38
ACGTcount: A:0.26, C:0.30, G:0.14, T:0.29
Consensus pattern (28 bp):
ACATTCATATGGCCCATTAGGCCCAATC
Found at i:82410316 original size:28 final size:28
Alignment explanation
Indices: 82410209--82410331 Score: 106
Period size: 28 Copynumber: 4.4 Consensus size: 28
82410199 AACCCTACAT
* *
82410209 ACATGCATATGGCCCA-CTTGGCCCAATC
1 ACATTCATATGGCCCATC-AGGCCCAATC
* * *
82410237 TCATTCATATAGCTCATCAGGCCCAATTC
1 ACATTCATATGGCCCATCAGGCCCAA-TC
* *
82410266 ACATTCATATGGCCCATTAGGCCTAATC
1 ACATTCATATGGCCCATCAGGCCCAATC
* * * *
82410294 TCATTTATATGGCCCATCCGGCCTTAATC
1 ACATTCATATGGCCCATCAGGCC-CAATC
82410323 ACATT-ATAT
1 ACATTCATAT
82410332 TCATGCTCAC
Statistics
Matches: 77, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
28 44 0.57
29 33 0.43
ACGTcount: A:0.27, C:0.30, G:0.13, T:0.30
Consensus pattern (28 bp):
ACATTCATATGGCCCATCAGGCCCAATC
Found at i:82410327 original size:57 final size:57
Alignment explanation
Indices: 82410209--82410316 Score: 146
Period size: 57 Copynumber: 1.9 Consensus size: 57
82410199 AACCCTACAT
* *
82410209 ACATGCATATGGCCCACTTGGCCCAATCTCATTCATATAGCTCATCAGGCCCAATTC
1 ACATTCATATGGCCCACTTGGCCCAATCTCATTCATATAGCCCATCAGGCCCAATTC
* * * *
82410266 ACATTCATATGGCCCA-TTAGGCCTAATCTCATTTATATGGCCCATCCGGCC
1 ACATTCATATGGCCCACTT-GGCCCAATCTCATTCATATAGCCCATCAGGCC
82410317 TTAATCACAT
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
56 2 0.05
57 42 0.95
ACGTcount: A:0.25, C:0.32, G:0.15, T:0.28
Consensus pattern (57 bp):
ACATTCATATGGCCCACTTGGCCCAATCTCATTCATATAGCCCATCAGGCCCAATTC
Found at i:82410437 original size:18 final size:18
Alignment explanation
Indices: 82410400--82410435 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
82410390 TGGGCGCAAC
82410400 AGCCCATCGAGCCCATTT
1 AGCCCATCGAGCCCATTT
*
82410418 AGCCCATTCTAGCCCATT
1 AGCCCA-TCGAGCCCATT
82410436 AGGCCAATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.22, C:0.39, G:0.14, T:0.25
Consensus pattern (18 bp):
AGCCCATCGAGCCCATTT
Found at i:82411942 original size:16 final size:16
Alignment explanation
Indices: 82411902--82411944 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
82411892 ATAGCCAAAC
*
82411902 TTTCAGCTTTTTGGCA
1 TTTCAGCTTTTCGGCA
*
82411918 TTTTAGCTTTTCGGCA
1 TTTCAGCTTTTCGGCA
*
82411934 TTTCGGCTTTT
1 TTTCAGCTTTT
82411945 GCCGATCTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.09, C:0.19, G:0.19, T:0.53
Consensus pattern (16 bp):
TTTCAGCTTTTCGGCA
Found at i:82414770 original size:79 final size:78
Alignment explanation
Indices: 82414668--82414891 Score: 274
Period size: 79 Copynumber: 2.8 Consensus size: 78
82414658 GCTCCTCGTT
* *
82414668 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
82414733 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
82414748 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
82414811 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * *
82414826 CAAATGCCTTCGGATCTTAGTCCGGGTATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAG-CCCGGTATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
82414890 GA
63 GA
82414892 CATCATTCAA
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
78 38 0.30
79 49 0.39
80 38 0.30
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:82414785 original size:39 final size:40
Alignment explanation
Indices: 82414668--82414891 Score: 257
Period size: 39 Copynumber: 5.7 Consensus size: 40
82414658 GCTCCTCGTT
* *
82414668 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
82414708 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
82414748 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
82414787 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * * *
82414826 CAAATGCCTTC-GGATCTTAGTCCGG-GTATGGTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGT-ATC-TCGCA
82414867 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
82414892 CATCATTCAA
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
38 2 0.01
39 74 0.45
40 74 0.45
41 14 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:82453731 original size:40 final size:39
Alignment explanation
Indices: 82453661--82453827 Score: 131
Period size: 39 Copynumber: 4.2 Consensus size: 39
82453651 TCGGGTTTAT
** * * *
82453661 CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCGTAAC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGAC-TAAC
* * * *
82453700 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAG
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGACTAAC
* **
82453739 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGA-C-TAAC
* * * *
82453779 CTGGATATAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTCAC-TAGCACAAATGCCTTCGGGAC-TAAC
82453820 CCGGATAT
1 CCGGATAT
82453828 CATTCGAGTA
Statistics
Matches: 104, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
38 3 0.03
39 45 0.43
40 26 0.25
41 27 0.26
42 3 0.03
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (39 bp):
CCGGATATAGTCACTAGCACAAATGCCTTCGGGACTAAC
Done.