Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 249 of 349
Found at i:82453743 original size:39 final size:40
Alignment explanation
Indices: 82453684--82453827 Score: 175
Period size: 39 Copynumber: 3.6 Consensus size: 40
82453674 CTCGCACAAG
* * * * * *
82453684 GCCTTCGGGTCGTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
82453724 GCCTTCGGGACTTAG-CCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
82453763 GCCTTC-GGATCTTAGTCTGGATATAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
82453804 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
82453828 CATTCGAGTA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
38 3 0.03
39 32 0.36
40 25 0.28
41 27 0.30
42 3 0.03
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:82457245 original size:47 final size:47
Alignment explanation
Indices: 82457186--82457573 Score: 558
Period size: 47 Copynumber: 8.4 Consensus size: 47
82457176 GATGTACAAG
* * *
82457186 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
82457233 GTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
82457280 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
82457327 GTGTATATATGTGATATGGCCGAGTGGCCAATGT-ATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
82457373 GTGTATATATGTGATAA-GCCGAGTGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
82457419 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * *
82457466 GTGTATATATGAGATAAGACCTAATGGCCGA-GATGATTG-ATGTG-AA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATG-TGA-TGAATGTGAAA
* * * *
82457512 GGGTATACATGTGATGA-GCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
82457558 GTG-ATAAATGT-ATAAG
1 GTGTATATATGTGATAAG
82457574 TCCCGAAGGG
Statistics
Matches: 312, Mismatches: 21, Indels: 18
0.89 0.06 0.05
Matches are distributed among these distances:
44 5 0.02
45 41 0.13
46 78 0.25
47 186 0.60
48 2 0.01
ACGTcount: A:0.33, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:82457438 original size:139 final size:139
Alignment explanation
Indices: 82457186--82457573 Score: 570
Period size: 139 Copynumber: 2.8 Consensus size: 139
82457176 GATGTACAAG
* *
82457186 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGT-ATGAATGTGAAAGTGTATATATGTGATAA-
*
82457251 GCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGA
64 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGA
82457316 TGAATGTGAAA
129 TGAATGTGAAA
* * *
82457327 GTGTATATATGTGATATGGCCGAGTGGCCAATGTATGAATGTGAAAGTGTATATATGTGATAAGC
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTATGAATGTGAAAGTGTATATATGTGATAAGC
*
82457392 CGAGTGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
66 CGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
82457457 AATGTGAAA
131 AATGTGAAA
* * * * *
82457466 GTGTATATATGAGATAAGACCTAATGGCCGAGATG-ATTG-ATGTG-AAGGGTATACATGTGATG
1 GTGTATATATGTGATAAGGCCTAATGGCC-A-ATGTA-TGAATGTGAAAGTGTATATATGTGATA
* *
82457528 AGCCGAATGGCCAATGTGATGGATGTGAAAGTG-ATAAATGT-ATAAG
63 AGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
82457574 TCCCGAAGGG
Statistics
Matches: 226, Mismatches: 18, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
137 5 0.02
138 7 0.03
139 144 0.64
140 36 0.16
141 34 0.15
ACGTcount: A:0.33, C:0.09, G:0.31, T:0.28
Consensus pattern (139 bp):
GTGTATATATGTGATAAGGCCTAATGGCCAATGTATGAATGTGAAAGTGTATATATGTGATAAGC
CGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
AATGTGAAA
Found at i:82461893 original size:39 final size:40
Alignment explanation
Indices: 82461850--82462017 Score: 139
Period size: 40 Copynumber: 4.2 Consensus size: 40
82461840 CTCGTTCAAG
* * * *
82461850 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* *
82461889 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
82461929 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * * *
82461969 GGCCTTCGGGACTTAACCCGAAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCG-GATTATAAAACTCACACGAA
82462009 TGCCTTCGG
1 TGCCTTCGG
82462018 ATCTTAGTCC
Statistics
Matches: 109, Mismatches: 13, Indels: 13
0.81 0.10 0.10
Matches are distributed among these distances:
39 26 0.24
40 79 0.72
41 3 0.03
42 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:82461939 original size:40 final size:39
Alignment explanation
Indices: 82461887--82462017 Score: 181
Period size: 40 Copynumber: 3.3 Consensus size: 39
82461877 TAACTCATAC
* *
82461887 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAAAACTCGCACA
* *
82461927 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTA-AAACTCGCACA
* *
82461967 AAGGCCTTCGGGACTTAACCCGAAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAA-AACTCGCACA
82462007 AATGCCTTCGG
1 AATGCCTTCGG
82462018 ATCTTAGTCC
Statistics
Matches: 80, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
39 3 0.04
40 77 0.96
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGAATTAAAACTCGCACA
Found at i:82462001 original size:80 final size:79
Alignment explanation
Indices: 82461885--82462068 Score: 214
Period size: 80 Copynumber: 2.3 Consensus size: 79
82461875 AGTAACTCAT
* ** *
82461885 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCC-GAAATTAAAACTCGCACAAATGCCTTC-GGATCTTAACCCG
*
82461949 GA-ATTAGT-A-TCTCGC
64 GATA-TAGTCACT-TAGC
**
82461964 ACAAAGGCCTTCGGGACTTAACCCGAAATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 ACAAA-GCCTTCGGGACTTAACCCGAAATTAA-AACTCGCACAAATGCCTTCGGATCTTAACCCG
82462029 GATATAGTCACTTAGC
64 GATATAGTCACTTAGC
*
82462045 ACAAAGCCTTCGGGACTTAGCCCG
1 ACAAAGCCTTCGGGACTTAACCCG
82462069 GACAGCATTC
Statistics
Matches: 91, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
79 13 0.14
80 67 0.74
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (79 bp):
ACAAAGCCTTCGGGACTTAACCCGAAATTAAAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTCACTTAGC
Found at i:82467251 original size:20 final size:19
Alignment explanation
Indices: 82467223--82467260 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
82467213 GTCATACTCA
82467223 TTAGCCATGATT-CATTCAT
1 TTAGCCATG-TTCCATTCAT
82467242 TTAGCACATGTTCCATTCA
1 TTAGC-CATGTTCCATTCA
82467261 GCATACATCT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.26, C:0.24, G:0.11, T:0.39
Consensus pattern (19 bp):
TTAGCCATGTTCCATTCAT
Found at i:82468196 original size:13 final size:13
Alignment explanation
Indices: 82468178--82468203 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
82468168 TGTGGACAAA
82468178 AATAGCCAATTTG
1 AATAGCCAATTTG
82468191 AATAGCCAATTTG
1 AATAGCCAATTTG
82468204 CCACCCCAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
AATAGCCAATTTG
Found at i:82476474 original size:43 final size:43
Alignment explanation
Indices: 82476427--82476585 Score: 135
Period size: 43 Copynumber: 3.7 Consensus size: 43
82476417 AACATATACA
* * *
82476427 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATTAAACATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATTAAAAATCG
** * * * * *
82476470 ATGCCATTGTCCCAAACAAGGTCTTACACGAAATTAGATA-CG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATTAAAAATCG
* * *
82476512 ATGCCGATGTCCCAGACATAGTCTTACACGTAA--AACATAAGTCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATTAA-A-AA-TCG
* *
82476556 ATGCCAACGTCCTAGACGTGGTCTTACACG
1 ATGCCAACGTCCCAGACATGGTCTTACACG
82476586 AAAACACATA
Statistics
Matches: 90, Mismatches: 22, Indels: 7
0.76 0.18 0.06
Matches are distributed among these distances:
40 1 0.01
41 1 0.01
42 30 0.33
43 31 0.34
44 27 0.30
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAATTAAAAATCG
Found at i:82476536 original size:42 final size:43
Alignment explanation
Indices: 82476435--82476541 Score: 112
Period size: 42 Copynumber: 2.5 Consensus size: 43
82476425 CAATGCCAAC
* * * *
82476435 GTCCCAGACGTGGTCTTACATGTAATTAAACATCGATGCCATT
1 GTCCCAGACATAGTCTTACACGAAATTAAACATCGATGCCATT
* * *
82476478 GTCCCAAACA-AGGTCTTACACGAAATTAGATA-CGATGCCGA-T
1 GTCCCAGACATA-GTCTTACACGAAATTAAACATCGATGCC-ATT
82476520 GTCCCAGACATAGTCTTACACG
1 GTCCCAGACATAGTCTTACACG
82476542 TAAAACATAA
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
42 27 0.51
43 26 0.49
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (43 bp):
GTCCCAGACATAGTCTTACACGAAATTAAACATCGATGCCATT
Found at i:82479638 original size:27 final size:27
Alignment explanation
Indices: 82479574--82479764 Score: 204
Period size: 27 Copynumber: 7.0 Consensus size: 27
82479564 ATGTTATTCA
* *
82479574 TTCATATTACGCCAGAAAGGCTTTTTCT
1 TTCATTTTACGCCACAAAGGC-TTTTCT
**
82479602 TTCACATTACGCCACAAAGGCTTTTCT
1 TTCATTTTACGCCACAAAGGCTTTTCT
*
82479629 TTCATTTTACGCCACAAAGGCTTTCCT
1 TTCATTTTACGCCACAAAGGCTTTTCT
* * ** * *
82479656 TTCACTTTATGTTATAATGGCTTTTCT
1 TTCATTTTACGCCACAAAGGCTTTTCT
* *
82479683 TTCATTTTACGCCATAAAGACTTTTCT
1 TTCATTTTACGCCACAAAGGCTTTTCT
* *
82479710 TTAATTTTATGCCACAAAGGCTTTTCT
1 TTCATTTTACGCCACAAAGGCTTTTCT
* *
82479737 TTCATTTTATGCCATAAAGG-TTGTTCT
1 TTCATTTTACGCCACAAAGGCTT-TTCT
82479764 T
1 T
82479765 CTTGACTATA
Statistics
Matches: 138, Mismatches: 24, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
26 2 0.01
27 117 0.85
28 19 0.14
ACGTcount: A:0.24, C:0.21, G:0.12, T:0.43
Consensus pattern (27 bp):
TTCATTTTACGCCACAAAGGCTTTTCT
Found at i:82479682 original size:54 final size:54
Alignment explanation
Indices: 82479574--82479764 Score: 231
Period size: 54 Copynumber: 3.5 Consensus size: 54
82479564 ATGTTATTCA
* * * *
82479574 TTCATATTACGCCAGAAAGGCTTTTTCTTTCACATTACGCCACAAAGGCTTTTCT
1 TTCATTTTACGCCATAAAGGC-TTTTCTTTCACTTTATGCCACAAAGGCTTTTCT
* * ** * *
82479629 TTCATTTTACGCCACAAAGGCTTTCCTTTCACTTTATGTTATAATGGCTTTTCT
1 TTCATTTTACGCCATAAAGGCTTTTCTTTCACTTTATGCCACAAAGGCTTTTCT
* * *
82479683 TTCATTTTACGCCATAAAGACTTTTCTTTAATTTTATGCCACAAAGGCTTTTCT
1 TTCATTTTACGCCATAAAGGCTTTTCTTTCACTTTATGCCACAAAGGCTTTTCT
*
82479737 TTCATTTTATGCCATAAAGG-TTGTTCTT
1 TTCATTTTACGCCATAAAGGCTT-TTCTT
82479765 CTTGACTATA
Statistics
Matches: 115, Mismatches: 20, Indels: 3
0.83 0.14 0.02
Matches are distributed among these distances:
53 2 0.02
54 94 0.82
55 19 0.17
ACGTcount: A:0.24, C:0.21, G:0.12, T:0.43
Consensus pattern (54 bp):
TTCATTTTACGCCATAAAGGCTTTTCTTTCACTTTATGCCACAAAGGCTTTTCT
Found at i:82479695 original size:81 final size:81
Alignment explanation
Indices: 82479596--82479747 Score: 232
Period size: 81 Copynumber: 1.9 Consensus size: 81
82479586 CAGAAAGGCT
* *
82479596 TTTTCTTTCACATTACGCCACAAAGGCTTTTCTTTCATTTTACGCCACAAAGGCTTTCCTTTCAC
1 TTTTCTTTCACATTACGCCACAAAGACTTTTCTTTAATTTTACGCCACAAAGGCTTTCCTTTCAC
82479661 TTTATGTTATAATGGC
66 TTTATGTTATAATGGC
** * * * *
82479677 TTTTCTTTCATTTTACGCCATAAAGACTTTTCTTTAATTTTATGCCACAAAGGCTTTTCTTTCAT
1 TTTTCTTTCACATTACGCCACAAAGACTTTTCTTTAATTTTACGCCACAAAGGCTTTCCTTTCAC
82479742 TTTATG
66 TTTATG
82479748 CCATAAAGGT
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 63 1.00
ACGTcount: A:0.22, C:0.22, G:0.10, T:0.46
Consensus pattern (81 bp):
TTTTCTTTCACATTACGCCACAAAGACTTTTCTTTAATTTTACGCCACAAAGGCTTTCCTTTCAC
TTTATGTTATAATGGC
Found at i:82479764 original size:81 final size:81
Alignment explanation
Indices: 82479574--82479764 Score: 231
Period size: 81 Copynumber: 2.3 Consensus size: 81
82479564 ATGTTATTCA
* * * * *
82479574 TTCATATTACGCCAGAAAGGCTTTTTCTTTCACATTACGCCACAAAGGCTTTTCTTTCATTTTAC
1 TTCATTTTATGCCATAAAGGC-TTTTCTTTCACATTACGCCACAAAGACTTTTCTTTAATTTTAC
82479639 GCCACAAAGGCTTTCCT
65 GCCACAAAGGCTTTCCT
* ** * ** * *
82479656 TTCACTTTATGTTATAATGGCTTTTCTTTCATTTTACGCCATAAAGACTTTTCTTTAATTTTATG
1 TTCATTTTATGCCATAAAGGCTTTTCTTTCACATTACGCCACAAAGACTTTTCTTTAATTTTACG
*
82479721 CCACAAAGGCTTTTCT
66 CCACAAAGGCTTTCCT
82479737 TTCATTTTATGCCATAAAGG-TTGTTCTT
1 TTCATTTTATGCCATAAAGGCTT-TTCTT
82479765 CTTGACTATA
Statistics
Matches: 90, Mismatches: 18, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
80 2 0.02
81 74 0.82
82 14 0.16
ACGTcount: A:0.24, C:0.21, G:0.12, T:0.43
Consensus pattern (81 bp):
TTCATTTTATGCCATAAAGGCTTTTCTTTCACATTACGCCACAAAGACTTTTCTTTAATTTTACG
CCACAAAGGCTTTCCT
Found at i:82479793 original size:32 final size:32
Alignment explanation
Indices: 82479757--82479819 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
82479747 GCCATAAAGG
*
82479757 TTGTTCTTCTTGACTATATACAATATTAATTA
1 TTGTTCTTCATGACTATATACAATATTAATTA
*
82479789 TTGTTTTTCATGACTATATACAATATTAATT
1 TTGTTCTTCATGACTATATACAATATTAATT
82479820 TCCCTAAACT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.32, C:0.11, G:0.06, T:0.51
Consensus pattern (32 bp):
TTGTTCTTCATGACTATATACAATATTAATTA
Found at i:82482103 original size:39 final size:40
Alignment explanation
Indices: 82482028--82482213 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
82482018 CGATATATTA
* * *
82482028 TATATCTGGGTTAAATCCCGCACGCTTCGTGCTGGTAATT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
* *
82482068 TATATCCGGGTTAAA-CCCGCAGGTTTCGTGTTGGTAATG
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
*
82482107 TATATCCGGGTTAAATCCCCCAGGCTTCGTGCTGGTAATG
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
* * *
82482147 TATATCCGGGTTAAATCTCGCAGGCTTAGTGCTGGT-A-C
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
*
82482185 TATATCCGGGCTTAAAGTTCCGCAGGCTT
1 TATATCCGGG-TTAAA-TCCCGCAGGCTT
82482214 TGAGCTAGTA
Statistics
Matches: 129, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
38 10 0.08
39 41 0.32
40 78 0.60
ACGTcount: A:0.20, C:0.22, G:0.25, T:0.32
Consensus pattern (40 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
Found at i:82482159 original size:79 final size:78
Alignment explanation
Indices: 82482028--82482200 Score: 231
Period size: 79 Copynumber: 2.2 Consensus size: 78
82482018 CGATATATTA
* * * *
82482028 TATATCTGGGTTAAATCCCGCACGCTTCGTGCTGGTAATTTATATCCGGGTTAAA-CCCGCAGGT
1 TATATCCGGGTTAAATCCCCCACGCTTCGTGCTGGTAATGTATATCCGGGTTAAATCCCGCAGGC
* * *
82482092 TTCGTGTTGGTAATG
66 TTAGTGCTGGT-A-C
* *
82482107 TATATCCGGGTTAAATCCCCCAGGCTTCGTGCTGGTAATGTATATCCGGGTTAAATCTCGCAGGC
1 TATATCCGGGTTAAATCCCCCACGCTTCGTGCTGGTAATGTATATCCGGGTTAAATCCCGCAGGC
82482172 TTAGTGCTGGTAC
66 TTAGTGCTGGTAC
82482185 TATATCCGGGCTTAAA
1 TATATCCGGG-TTAAA
82482201 GTTCCGCAGG
Statistics
Matches: 83, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
78 10 0.12
79 57 0.69
80 16 0.19
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.32
Consensus pattern (78 bp):
TATATCCGGGTTAAATCCCCCACGCTTCGTGCTGGTAATGTATATCCGGGTTAAATCCCGCAGGC
TTAGTGCTGGTAC
Found at i:82484486 original size:14 final size:14
Alignment explanation
Indices: 82484467--82484500 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
82484457 AAGTCTGCAC
82484467 TTAATTTCGAGAAT
1 TTAATTTCGAGAAT
*
82484481 TTAATTTTGAGAAT
1 TTAATTTCGAGAAT
82484495 TTAATT
1 TTAATT
82484501 CGCCACACAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.35, C:0.03, G:0.12, T:0.50
Consensus pattern (14 bp):
TTAATTTCGAGAAT
Found at i:82486384 original size:43 final size:43
Alignment explanation
Indices: 82486302--82486387 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 43
82486292 GTACAAAGAC
* * *
82486302 AGGAGCTAGTTATAGGCATTTCATGCATGATAGGATGTGACAT
1 AGGAACTAGTTAGAGGCATGTCATGCATGATAGGATGTGACAT
* * * *
82486345 AGGAACTAGTTAGAGGCGTGTCATTCATGGTAGGGTGTGACAT
1 AGGAACTAGTTAGAGGCATGTCATGCATGATAGGATGTGACAT
82486388 TGTCTTTGAT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.28, C:0.12, G:0.31, T:0.29
Consensus pattern (43 bp):
AGGAACTAGTTAGAGGCATGTCATGCATGATAGGATGTGACAT
Found at i:82498960 original size:46 final size:45
Alignment explanation
Indices: 82498861--82499031 Score: 150
Period size: 46 Copynumber: 3.7 Consensus size: 45
82498851 TCATCTCGTA
* * * * * * *
82498861 GCCGACGCATGTCCCAAACATGTCTTACACTGGCTTACGCCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGCCCT-CGTCTCAAT
* *
82498907 GCTGATGCATGTCCCAGACATGTCTCACACTAGCCCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACT-GCCCTCGTCTCAAT
* *
82498953 GCCGATGCCATGTCCTAGACATGGTCTTACACTG-GCTC-TCAT-AATGT
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGCCCTCGTC-TCAA--T
82499000 GGCCGATGCATGTCCCAGACATGTCTTACACT
1 -GCCGATGCATGTCCCAGACATGTCTTACACT
82499032 AGCTCGCACA
Statistics
Matches: 104, Mismatches: 14, Indels: 14
0.79 0.11 0.11
Matches are distributed among these distances:
45 4 0.04
46 53 0.51
47 31 0.30
48 16 0.15
ACGTcount: A:0.22, C:0.32, G:0.20, T:0.26
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGCCCTCGTCTCAAT
Found at i:82500792 original size:22 final size:23
Alignment explanation
Indices: 82500739--82500850 Score: 86
Period size: 23 Copynumber: 4.8 Consensus size: 23
82500729 GTCATGGTCG
* *
82500739 GTAAGCTCTTACTGAGCTGATAAACA
1 GTAAGCTC-TATTGAGCTG--AATCA
82500765 GTAAGCTCTATTGAGCTGAAT-A
1 GTAAGCTCTATTGAGCTGAATCA
*
82500787 GTAAGCTCT-TTCGAGCTGAATCG
1 GTAAGCTCTATT-GAGCTGAATCA
* * * *
82500810 GTAAGCTCCAATGAGCTTAAACA
1 GTAAGCTCTATTGAGCTGAATCA
*
82500833 GTAACCTCT-TTCGAGCTG
1 GTAAGCTCTATT-GAGCTG
82500851 TTGTGAGTCC
Statistics
Matches: 70, Mismatches: 12, Indels: 11
0.75 0.13 0.12
Matches are distributed among these distances:
21 2 0.03
22 20 0.29
23 30 0.43
24 1 0.01
25 9 0.13
26 8 0.11
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (23 bp):
GTAAGCTCTATTGAGCTGAATCA
Found at i:82505815 original size:30 final size:30
Alignment explanation
Indices: 82505780--82505866 Score: 95
Period size: 30 Copynumber: 2.9 Consensus size: 30
82505770 ACCCCAAGGG
*
82505780 ACACATAGCCGTGTA-ACATGACCGTGTGTC
1 ACACATAGCCGAG-ACACATGACCGTGTGTC
* * *
82505810 ACACATGGCTGAGACACATGATCGTGTGTC
1 ACACATAGCCGAGACACATGACCGTGTGTC
* * *
82505840 ACACATGGCTGAGACACATGCCCGTGT
1 ACACATAGCCGAGACACATGACCGTGT
82505867 TTCTACCCGT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
29 1 0.02
30 49 0.98
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.22
Consensus pattern (30 bp):
ACACATAGCCGAGACACATGACCGTGTGTC
Found at i:82506803 original size:24 final size:24
Alignment explanation
Indices: 82506767--82506813 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
82506757 CTGAGCTAAT
82506767 AAACAGTAAGCTCTATTGAGCTGG
1 AAACAGTAAGCTCTATTGAGCTGG
* *
82506791 AAACGGTACGCTCTATTGAGCTG
1 AAACAGTAAGCTCTATTGAGCTG
82506814 AATAGTAGGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.26
Consensus pattern (24 bp):
AAACAGTAAGCTCTATTGAGCTGG
Found at i:82506869 original size:23 final size:22
Alignment explanation
Indices: 82506800--82506880 Score: 76
Period size: 22 Copynumber: 3.6 Consensus size: 22
82506790 GAAACGGTAC
*
82506800 GCTCTATT-GAGCTGAATAGTAG
1 GCTCT-TTCGAGCTGAATAGTAA
* * *
82506822 GCTCTTTCAACCTGAACAGTAA
1 GCTCTTTCGAGCTGAATAGTAA
*
82506844 GCTTTTTCGAGCTGAAATAGTAA
1 GCTCTTTCGAGCTG-AATAGTAA
82506867 GCTCTTAT-GAGCTG
1 GCTCTT-TCGAGCTG
82506881 TGGTGAGTCT
Statistics
Matches: 47, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
21 2 0.04
22 26 0.55
23 18 0.38
24 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (22 bp):
GCTCTTTCGAGCTGAATAGTAA
Found at i:82509976 original size:29 final size:29
Alignment explanation
Indices: 82509941--82510014 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
82509931 GTTGTGAGAT
* *
82509941 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
82509970 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
82509999 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
82510015 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:82510389 original size:17 final size:17
Alignment explanation
Indices: 82510367--82510401 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
82510357 GATTGAATCG
82510367 TAAGGTCTAAGAAACTA
1 TAAGGTCTAAGAAACTA
82510384 TAAGGTCTAAGAAACTA
1 TAAGGTCTAAGAAACTA
82510401 T
1 T
82510402 GGCATAGTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.11, G:0.17, T:0.26
Consensus pattern (17 bp):
TAAGGTCTAAGAAACTA
Found at i:82518112 original size:29 final size:29
Alignment explanation
Indices: 82518077--82518150 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
82518067 GTTGTGAGAT
* *
82518077 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
82518106 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
82518135 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
82518151 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:82527048 original size:40 final size:40
Alignment explanation
Indices: 82527004--82527138 Score: 252
Period size: 40 Copynumber: 3.4 Consensus size: 40
82526994 CAGATGTAAC
82527004 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
82527044 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
82527084 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
82527124 AACCCGCACGAATGC
1 AACCAGCACGAATGC
82527139 TATGCACATA
Statistics
Matches: 94, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 94 1.00
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.21
Consensus pattern (40 bp):
AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:82533552 original size:29 final size:29
Alignment explanation
Indices: 82533486--82533610 Score: 189
Period size: 29 Copynumber: 4.3 Consensus size: 29
82533476 AAGTCTACAT
* * *
82533486 ACATGCATATGGCCCACTAGG-CCTAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
82533514 TCATTCATATGGCCGATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
82533543 ACATTCATATGGCCGATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
82533572 ACATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
82533601 ACATTCATAT
1 ACATTCATAT
82533611 AGATGCTTTC
Statistics
Matches: 89, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
28 17 0.19
29 72 0.81
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:82533846 original size:16 final size:16
Alignment explanation
Indices: 82533825--82533857 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
82533815 CCAAACTTTT
*
82533825 AGCTTTTTAGCATTTC
1 AGCTTTTCAGCATTTC
82533841 AGCTTTTCAGCATTTC
1 AGCTTTTCAGCATTTC
82533857 A
1 A
82533858 TGATTTACCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.21, G:0.12, T:0.45
Consensus pattern (16 bp):
AGCTTTTCAGCATTTC
Found at i:82540981 original size:43 final size:44
Alignment explanation
Indices: 82540910--82541044 Score: 184
Period size: 43 Copynumber: 3.1 Consensus size: 44
82540900 TATCGAAATG
* * *
82540910 TGATATTCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGATATTCGGGCTTTGAGCTTAGCAGGCTATAATGCCGGTGAAA
* *
82540954 TGATA-TCGGGCTTTGAGCTTAGTAGGCTATGATGCCGGTGAAA
1 TGATATTCGGGCTTTGAGCTTAGCAGGCTATAATGCCGGTGAAA
*
82540997 T-ATTATTCGAGCCTTTGAGCTTAGCAGGCTATAATGCCGGTGAAA
1 TGA-TATTCG-GGCTTTGAGCTTAGCAGGCTATAATGCCGGTGAAA
82541042 TGA
1 TGA
82541045 AATGTTATGT
Statistics
Matches: 79, Mismatches: 8, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
42 1 0.01
43 36 0.46
44 8 0.10
45 33 0.42
46 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (44 bp):
TGATATTCGGGCTTTGAGCTTAGCAGGCTATAATGCCGGTGAAA
Found at i:82541026 original size:45 final size:43
Alignment explanation
Indices: 82540930--82541044 Score: 169
Period size: 45 Copynumber: 2.6 Consensus size: 43
82540920 GCTTCGGGCC
*
82540930 TAGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTTGAGCT
1 TAGCAGGCTATAATGCCGGTGAAATGATATCGGCCTTTGAGCT
* *
82540973 TAGTAGGCTATGATGCCGGTGAAAT-ATTATTCGAGCCTTTGAGCT
1 TAGCAGGCTATAATGCCGGTGAAATGA-TA-TCG-GCCTTTGAGCT
82541018 TAGCAGGCTATAATGCCGGTGAAATGA
1 TAGCAGGCTATAATGCCGGTGAAATGA
82541045 AATGTTATGT
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
42 1 0.02
43 25 0.40
44 3 0.05
45 33 0.52
46 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (43 bp):
TAGCAGGCTATAATGCCGGTGAAATGATATCGGCCTTTGAGCT
Found at i:82541514 original size:114 final size:114
Alignment explanation
Indices: 82541314--82541544 Score: 338
Period size: 114 Copynumber: 2.0 Consensus size: 114
82541304 ATGATATTTG
*
82541314 TATCCGGCTTAAAGACCGCAGGCTATATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCG
1 TATCCGGCTTAAAGACCGCAGGCTATATGCTGGAATTATATCCGGGTTAAATCCCGCAAGCTTCG
* * *
82541379 TGCTGGTAATATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAATA
66 TGCTGGTAATATATCCGGGTTAAATCCCACAAGCCTAGTGCTGGTAATA
* ** * *
82541428 TATCCGGGTTAAATCCCGCAGGCTTTATGCTGGTAA-TATATCCGGGTTAATTCCCGCAAGCTTC
1 TATCCGGCTTAAAGACCGCAGGCTATATGCTGG-AATTATATCCGGGTTAAATCCCGCAAGCTTC
* * *
82541492 GTGCTGGTATTATATCCGGGTTAAATCCCGCAAGCCTAGTGCTGGTATTA
65 GTGCTGGTAATATATCCGGGTTAAATCCCACAAGCCTAGTGCTGGTAATA
82541542 TAT
1 TAT
82541545 TCGAGCCTTT
Statistics
Matches: 104, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
114 102 0.98
115 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.30
Consensus pattern (114 bp):
TATCCGGCTTAAAGACCGCAGGCTATATGCTGGAATTATATCCGGGTTAAATCCCGCAAGCTTCG
TGCTGGTAATATATCCGGGTTAAATCCCACAAGCCTAGTGCTGGTAATA
Found at i:82541524 original size:38 final size:38
Alignment explanation
Indices: 82541314--82541544 Score: 304
Period size: 38 Copynumber: 6.1 Consensus size: 38
82541304 ATGATATTTG
* ** *
82541314 TATCCGGCTTAAAGACCGCAGGCTAT-ATGCTGG-AATTA
1 TATCCGGGTTAAATCCCGCAGGCT-TCGTGCTGGTAA-TA
82541352 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
*
82541390 TATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
**
82541428 TATCCGGGTTAAATCCCGCAGGCTTTATGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* * *
82541466 TATCCGGGTTAATTCCCGCAAGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* * * *
82541504 TATCCGGGTTAAATCCCGCAAGCCTAGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
82541542 TAT
1 TAT
82541545 TCGAGCCTTT
Statistics
Matches: 175, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
37 1 0.01
38 172 0.98
39 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.30
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
Found at i:82541606 original size:45 final size:45
Alignment explanation
Indices: 82541542--82541669 Score: 163
Period size: 45 Copynumber: 2.9 Consensus size: 45
82541532 GCTGGTATTA
* *
82541542 TATTCGAGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
* * *
82541587 TATTCGGGCCTTTGGGCCTAGTAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
* *
82541632 TATTCGGGCC-TCGATCCTAGCAGG-TGA-AATGCCGGTGA
1 TATTCGGGCCTTTGAGCCTAGCAGGCT-ATAATGCCGGTGA
82541670 TTTGAGAAAA
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
43 12 0.16
44 11 0.15
45 50 0.68
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.27
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
Found at i:82542572 original size:27 final size:27
Alignment explanation
Indices: 82542485--82542785 Score: 189
Period size: 27 Copynumber: 11.2 Consensus size: 27
82542475 ATTACCGTTT
* ***
82542485 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACTAAAA
* * * ***
82542512 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACTAAAA
* *
82542539 TAACCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* *
82542566 TACCCTC-AGTTTACAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACTAAAA
* *
82542593 TACCCTCGA-TCAGTAAAATTACCAAAA
1 TACCCTCGATTTA-TAAAATTACTAAAA
* * * *
82542620 TACCCTAG-TCTGTAAAATTGCTAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* * * *
82542646 TACCCTTGGTTTGTAAAATTACTGAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* * *
82542673 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* * *
82542700 TACCCATAG-TTTGTAAAATTACCAAAA
1 TACCC-TCGATTTATAAAATTACTAAAA
* * * * *
82542727 TACTACT-GGTTTGTGAAATTACTGAAA
1 TAC-CCTCGATTTATAAAATTACTAAAA
* * *
82542754 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
82542781 TACCC
1 TACCC
82542786 CTAATTTACA
Statistics
Matches: 226, Mismatches: 39, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
26 25 0.11
27 198 0.88
28 3 0.01
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACTAAAA
Found at i:82542747 original size:81 final size:80
Alignment explanation
Indices: 82542553--82542785 Score: 297
Period size: 81 Copynumber: 2.9 Consensus size: 80
82542543 CTCGATTTAC
* * ** ** ** * **
82542553 AAAATTACTAAAATACCCTCAGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAA
1 AAAATTACCAAAATACACTTGGTTTGTAAAATTACTGAAATACCCTCAATTTGTAAAATTACCAA
82542618 AATACCCTAGTCTGT
66 AATACCCTAGTCTGT
* * *
82542633 AAAATTGCTAAAATACCCTTGGTTTGTAAAATTACTGAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTACCAAAATACACTTGGTTTGTAAAATTACTGAAATACCCTCAATTTGTAAAATTACCAA
*
82542698 AATACCCATAGTTTGT
66 AATACCC-TAGTCTGT
*
82542714 AAAATTACCAAAATACTAC-TGGTTTGTGAAATTACTGAAATACCCTCAATTTGTAAAATTACCA
1 AAAATTACCAAAATAC-ACTTGGTTTGTAAAATTACTGAAATACCCTCAATTTGTAAAATTACCA
82542778 AAATACCC
65 AAATACCC
82542786 CTAATTTACA
Statistics
Matches: 136, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
80 62 0.46
81 73 0.54
82 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (80 bp):
AAAATTACCAAAATACACTTGGTTTGTAAAATTACTGAAATACCCTCAATTTGTAAAATTACCAA
AATACCCTAGTCTGT
Found at i:82542792 original size:27 final size:26
Alignment explanation
Indices: 82542553--82542785 Score: 232
Period size: 27 Copynumber: 8.7 Consensus size: 26
82542543 CTCGATTTAC
* **
82542553 AAAATTACTAAAATACCCTCAGTTTAC
1 AAAATTACCAAAATACCCT-AGTTTGT
* **
82542580 AAAATTACCAAAATACCCTCGATCAGT
1 AAAATTACCAAAATACCCTAG-TTTGT
*
82542607 AAAATTACCAAAATACCCTAGTCTGT
1 AAAATTACCAAAATACCCTAGTTTGT
* * *
82542633 AAAATTGCTAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCC-TAGTTTGT
** *
82542660 AAAATTACTGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCT-AGTTTGT
82542687 AAAATTACCAAAATACCCATAGTTTGT
1 AAAATTACCAAAATACCC-TAGTTTGT
* *
82542714 AAAATTACCAAAATACTACTGGTTTGT
1 AAAATTACCAAAATAC-CCTAGTTTGT
* ** *
82542741 GAAATTACTGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCT-AGTTTGT
82542768 AAAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
82542786 CTAATTTACA
Statistics
Matches: 170, Mismatches: 30, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
26 24 0.14
27 144 0.85
28 2 0.01
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (26 bp):
AAAATTACCAAAATACCCTAGTTTGT
Found at i:82542808 original size:54 final size:52
Alignment explanation
Indices: 82542553--82542813 Score: 195
Period size: 54 Copynumber: 4.8 Consensus size: 52
82542543 CTCGATTTAC
* * **
82542553 AAAATTACTAAAATACCCTCAGTTTACAAAATTACCAAAATACCCTCGATCAGT
1 AAAATTACCAAAATACCCT-AGTTTAC-AAATTACCAAAATACCCTCAATTTGT
* * ***
82542607 AAAATTACCAAAATACCCTAGTCTGTA-AAATTGCTAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTAGT-T-TACAAATTACCAAAATACCCTCAATTTGT
** * *
82542660 AAAATTACTGAAATACCCTCAATTTGTA-AAATTACCAAAATACCCAT-AGTTTGT
1 AAAATTACCAAAATACCCT--AGTT-TACAAATTACCAAAATACCC-TCAATTTGT
* * ** **
82542714 AAAATTACCAAAATACTACTGGTTTGTGAAATTACTGAAATACCCTCAATTTGT
1 AAAATTACCAAAATAC-CCTAGTTT-ACAAATTACCAAAATACCCTCAATTTGT
* * *
82542768 AAAATTACCAAAATACCCCTAATTTACAAAGTTCCCGAAATACCCT
1 AAAATTACCAAAATA-CCCTAGTTTACAAA-TTACCAAAATACCCT
82542814 TGACTTTCTA
Statistics
Matches: 167, Mismatches: 29, Indels: 22
0.77 0.13 0.10
Matches are distributed among these distances:
52 1 0.01
53 46 0.28
54 112 0.67
55 8 0.05
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (52 bp):
AAAATTACCAAAATACCCTAGTTTACAAATTACCAAAATACCCTCAATTTGT
Found at i:82542863 original size:27 final size:27
Alignment explanation
Indices: 82542824--82542875 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
82542814 TGACTTTCTA
82542824 AAAATTATGGAAATACCATTGGTTTAC
1 AAAATTATGGAAATACCATTGGTTTAC
*
82542851 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TGGAAATACCATTGGTTT
82542876 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (27 bp):
AAAATTATGGAAATACCATTGGTTTAC
Found at i:82542978 original size:26 final size:27
Alignment explanation
Indices: 82542928--82543014 Score: 106
Period size: 27 Copynumber: 3.3 Consensus size: 27
82542918 TACCCCTATT
*
82542928 AGGTAAAAAGACCGTAAAGCCCCTGTA
1 AGGTAAAGAGACCGTAAAGCCCCTGTA
82542955 AGGTAAAGAGACC-TAAAGCCCCTGTA
1 AGGTAAAGAGACCGTAAAGCCCCTGTA
* * *
82542981 GGGTAAAGTGACCGTAATA-CCCCTATA
1 AGGTAAAGAGACCGTAA-AGCCCCTGTA
*
82543008 TGGTAAA
1 AGGTAAA
82543015 ATGACGAATA
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
26 24 0.45
27 28 0.53
28 1 0.02
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (27 bp):
AGGTAAAGAGACCGTAAAGCCCCTGTA
Found at i:82543019 original size:27 final size:27
Alignment explanation
Indices: 82542920--82543019 Score: 91
Period size: 27 Copynumber: 3.7 Consensus size: 27
82542910 GGCTAAAATA
*
82542920 CCCCTAT-TAGGTAAAAAGACCGTAAAG
1 CCCCTATAT-GGTAAAATGACCGTAAAG
* *
82542947 CCCCTGTAAGGTAAAGA-GACC-TAAAG
1 CCCCTATATGGTAAA-ATGACCGTAAAG
* * *
82542973 CCCCTGTAGGGTAAAGTGACCGTAATA-
1 CCCCTATATGGTAAAATGACCGTAA-AG
82543000 CCCCTATATGGTAAAATGAC
1 CCCCTATATGGTAAAATGAC
82543020 GAATATTTGT
Statistics
Matches: 61, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
26 23 0.38
27 36 0.59
28 2 0.03
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.20
Consensus pattern (27 bp):
CCCCTATATGGTAAAATGACCGTAAAG
Found at i:82543699 original size:26 final size:26
Alignment explanation
Indices: 82543670--82543819 Score: 203
Period size: 26 Copynumber: 5.8 Consensus size: 26
82543660 GAGGAAGTGC
82543670 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* * **
82543696 AAAAGGGCTTATGCCCTAATTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
82543722 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
82543748 AAAAGGGCTTATGCTCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
82543774 AAAAGGGCTTATACCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
82543800 AAAAGGGATT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
82543820 ATCAAAAGAG
Statistics
Matches: 107, Mismatches: 17, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
25 9 0.08
26 98 0.92
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:82543748 original size:52 final size:51
Alignment explanation
Indices: 82543670--82543814 Score: 229
Period size: 52 Copynumber: 2.8 Consensus size: 51
82543660 GAGGAAGTGC
82543670 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCTAATTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCC-AATTTACCG
* *
82543722 AAAAGGGCTTATGCCCTAGTTTATTGAAAAGGGCTTATGCTCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGC-CCAATTTACCG
* *
82543774 AAAAGGGCTTATACCCCAGTTTATTGAAAAGGGATT-TGCCC
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCC
82543815 CAGTTATCAA
Statistics
Matches: 87, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
50 2 0.02
51 3 0.03
52 80 0.92
53 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCAATTTACCG
Found at i:82544024 original size:42 final size:42
Alignment explanation
Indices: 82543965--82544056 Score: 132
Period size: 42 Copynumber: 2.2 Consensus size: 42
82543955 TAGTCTCCCC
* ** *
82543965 AAATGGGCTTGCATACATTCATTGGTATTTCATGCT-ATATTG
1 AAATGGGCTTGCATACATACATTGACATTACATG-TGATATTG
82544007 AAATGGGCTTGCATACATACATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATACATTGACATTACATGTGATATTG
82544049 AAATGGGC
1 AAATGGGC
82544057 CTAAGGGCCA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
41 1 0.02
42 44 0.98
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATACATTGACATTACATGTGATATTG
Found at i:82544157 original size:31 final size:31
Alignment explanation
Indices: 82544080--82544158 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
82544070 CGTTTACAGT
* *
82544080 AAAGGCTTCAGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
82544111 AAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
82544142 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
82544159 AACTGTTAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:82551703 original size:50 final size:50
Alignment explanation
Indices: 82551487--82551710 Score: 204
Period size: 50 Copynumber: 4.5 Consensus size: 50
82551477 CTGATACGCA
* * * **
82551487 TAGTAGCCTGTACTTAGTACTACACATGCGAC-CAACAATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACTTAACAATCTGGTACACG
* * * * * * *
82551536 TAGTAGCCTGCACTTAGAACTAAACACGTGACCTCACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACTTAACAATCTGGTACACG
* * * * * *
82551586 TAGTAGTCTGCACTTAGTACTACAAACGTGA-TCGAAGTC-AT-TGAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACT-TAA--CAATCTG-GTACACG
* *
82551637 TAGTAGCCTGCACTTAGTACTACACATGCGACTTAACAATATGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACTTAACAATCTGGTACACG
82551687 TAGTAGCCTGCACTTAGTACTACA
1 TAGTAGCCTGCACTTAGTACTACA
82551711 GACGTGTATT
Statistics
Matches: 139, Mismatches: 28, Indels: 15
0.76 0.15 0.08
Matches are distributed among these distances:
49 28 0.20
50 72 0.52
51 37 0.27
52 2 0.01
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACTTAACAATCTGGTACACG
Found at i:82553885 original size:37 final size:37
Alignment explanation
Indices: 82553835--82553913 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
82553825 TTATTACGAA
* * *
82553835 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
82553872 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
82553909 GTCTT
1 GTCTT
82553914 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:82554110 original size:47 final size:47
Alignment explanation
Indices: 82554032--82554395 Score: 595
Period size: 47 Copynumber: 7.7 Consensus size: 47
82554022 CCCTCCGGGA
* * * * * *
82554032 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82554079 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82554126 CTTACCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82554173 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82554220 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82554267 CTTATCACATATATACACTTTCACATTCATCACATCGGTCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82554314 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
82554361 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
82554396 AGAATCCTAA
Statistics
Matches: 299, Mismatches: 17, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 298 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:82558150 original size:40 final size:40
Alignment explanation
Indices: 82558106--82558310 Score: 302
Period size: 40 Copynumber: 5.1 Consensus size: 40
82558096 CCAGCATGAT
* * * * *
82558106 TGCTCTTCGAGACCTAGCCCAGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
82558146 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
82558186 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
82558226 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
82558266 TGCTCTTCGGTACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
82558306 TGCTC
1 TGCTC
82558311 GTAATCTTTT
Statistics
Matches: 150, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 150 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:82560833 original size:39 final size:40
Alignment explanation
Indices: 82560790--82560957 Score: 148
Period size: 40 Copynumber: 4.2 Consensus size: 40
82560780 CTCGTTCAAG
* * * *
82560790 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* *
82560829 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
82560869 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * *
82560909 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
82560949 TGCCTTCGG
1 TGCCTTCGG
82560958 ATCTTAGTCT
Statistics
Matches: 111, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
39 26 0.23
40 81 0.73
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:82560879 original size:40 final size:39
Alignment explanation
Indices: 82560827--82560957 Score: 190
Period size: 40 Copynumber: 3.3 Consensus size: 39
82560817 TAACTCATAC
* *
82560827 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAAAACTCGCACA
* *
82560867 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTA-AAACTCGCACA
*
82560907 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAA-AACTCGCACA
82560947 AATGCCTTCGG
1 AATGCCTTCGG
82560958 ATCTTAGTCT
Statistics
Matches: 81, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
39 3 0.04
40 78 0.96
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGAATTAAAACTCGCACA
Found at i:82560994 original size:80 final size:79
Alignment explanation
Indices: 82560825--82561010 Score: 218
Period size: 80 Copynumber: 2.3 Consensus size: 79
82560815 AGTAACTCAT
* * *
82560825 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGGACTTAACCCGG
*
82560890 AATTAGTATCTCGC
66 AATTAGTATCTAGC
**
82560904 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTC-GGATCTTAGTC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGGA-CTTAACC
*
82560967 TGG-ATATAGTCA-CTTAGC
63 CGGAAT-TAGT-ATC-TAGC
*
82560985 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
82561011 CAGCATTCAA
Statistics
Matches: 93, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
79 13 0.14
80 71 0.76
81 9 0.10
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (79 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGGACTTAACCCGG
AATTAGTATCTAGC
Found at i:82579490 original size:20 final size:19
Alignment explanation
Indices: 82579467--82579539 Score: 83
Period size: 20 Copynumber: 3.7 Consensus size: 19
82579457 TAAACTGTAA
*
82579467 TTCATTCATATAACTAGTAG
1 TTCATCCATATAA-TAGTAG
*
82579487 TTCATCCGTATAAATAGTAG
1 TTCATCCATAT-AATAGTAG
* *
82579507 TTCATCAATAATAATAGTAA
1 TTCATCCAT-ATAATAGTAG
82579527 TTCATCCATATAA
1 TTCATCCATATAA
82579540 ACACATATCT
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
19 4 0.09
20 37 0.82
21 4 0.09
ACGTcount: A:0.40, C:0.15, G:0.08, T:0.37
Consensus pattern (19 bp):
TTCATCCATATAATAGTAG
Found at i:82579511 original size:40 final size:40
Alignment explanation
Indices: 82579453--82579541 Score: 103
Period size: 40 Copynumber: 2.2 Consensus size: 40
82579443 CATTTCTACT
*
82579453 CGTATAAACTGTAATTCATTC-AT-ATAACTAGTAGTTCATC
1 CGTATAAACTGTAATTCA-TCAATAATAA-TAGTAATTCATC
*
82579493 CGTATAAA-TAGTAGTTCATCAATAATAATAGTAATTCATC
1 CGTATAAACT-GTAATTCATCAATAATAATAGTAATTCATC
*
82579533 CATATAAAC
1 CGTATAAAC
82579542 ACATATCTTA
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
39 3 0.07
40 35 0.83
41 4 0.10
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.35
Consensus pattern (40 bp):
CGTATAAACTGTAATTCATCAATAATAATAGTAATTCATC
Found at i:82579696 original size:24 final size:26
Alignment explanation
Indices: 82579669--82579755 Score: 71
Period size: 23 Copynumber: 3.6 Consensus size: 26
82579659 ATCATTTATA
* *
82579669 CTCTT-TCGAGC-CATGATCAGTAAG
1 CTCTTCTCGAGCTAATGAACAGTAAG
*
82579693 CTCTTCTTGAGCTAATGAACAGTAAG
1 CTCTTCTCGAGCTAATGAACAGTAAG
*
82579719 CTCTAT-T-GAGCTAA--AACGGTAAG
1 CTCT-TCTCGAGCTAATGAACAGTAAG
*
82579742 CTC-TATCGAGCTAA
1 CTCTTCTCGAGCTAA
82579756 ACACTAAGCT
Statistics
Matches: 54, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
21 1 0.02
22 1 0.02
23 18 0.33
24 5 0.09
25 12 0.22
26 16 0.30
27 1 0.02
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
CTCTTCTCGAGCTAATGAACAGTAAG
Found at i:82579744 original size:23 final size:23
Alignment explanation
Indices: 82579688--82579803 Score: 94
Period size: 23 Copynumber: 4.9 Consensus size: 23
82579678 GCCATGATCA
* *
82579688 GTAAGCTCTTCTTGAGCTAATGAACA
1 GTAAGCTC-TATTGAGCTAA--AACG
82579714 GTAAGCTCTATTGAGCTAAAACG
1 GTAAGCTCTATTGAGCTAAAACG
*
82579737 GTAAGCTCTATCGAGCTAAACAC-
1 GTAAGCTCTATTGAGCTAAA-ACG
* *
82579760 -TAAGCTCATACT-AGCTGAAACG
1 GTAAGCTC-TATTGAGCTAAAACG
* *
82579782 GTAAGCTCCAATGAGCTGAAAA
1 GTAAGCTCTATTGAGCT-AAAA
82579804 TAGTAAAGTC
Statistics
Matches: 75, Mismatches: 9, Indels: 14
0.77 0.09 0.14
Matches are distributed among these distances:
21 2 0.03
22 15 0.20
23 35 0.47
24 5 0.07
25 10 0.13
26 8 0.11
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (23 bp):
GTAAGCTCTATTGAGCTAAAACG
Found at i:82579798 original size:45 final size:45
Alignment explanation
Indices: 82579710--82579798 Score: 110
Period size: 45 Copynumber: 2.0 Consensus size: 45
82579700 TGAGCTAATG
* * *
82579710 AACAGTAAGCTCTATTGAGCTAAAACGGTAAGCTCTATCGAGCTA
1 AACACTAAGCTCTACTGAGCTAAAACGGTAAGCTCAATCGAGCTA
*
82579755 AACACTAAGCTCATACT-AGCTGAAACGGTAAGCTCCAAT-GAGCT
1 AACACTAAGCTC-TACTGAGCTAAAACGGTAAGCT-CAATCGAGCT
82579799 GAAAATAGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
45 32 0.84
46 6 0.16
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.22
Consensus pattern (45 bp):
AACACTAAGCTCTACTGAGCTAAAACGGTAAGCTCAATCGAGCTA
Found at i:82582889 original size:46 final size:46
Alignment explanation
Indices: 82582822--82582943 Score: 181
Period size: 46 Copynumber: 2.7 Consensus size: 46
82582812 CGCCCCTAAG
* * *
82582822 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAA
** *
82582868 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAA
*
82582914 TGAACTCAGACTCAACTCAACGAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
82582944 TGCTCAACCA
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 69 1.00
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAA
Found at i:82585329 original size:30 final size:30
Alignment explanation
Indices: 82585285--82585373 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
82585275 CAAAGATAAC
*
82585285 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
82585314 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
82585344 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
82585374 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:82585333 original size:15 final size:14
Alignment explanation
Indices: 82585285--82585367 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
82585275 CAAAGATAAC
*
82585285 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
82585299 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
82585314 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
82585329 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
82585344 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
82585359 AAGAAACCC
1 AAGAAACCC
82585368 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:82585373 original size:15 final size:15
Alignment explanation
Indices: 82585296--82585373 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
82585286 AGAAAACCGA
82585296 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
82585311 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
82585325 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
82585340 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
82585356 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
82585371 ATA
1 ATA
82585374 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:82591932 original size:40 final size:40
Alignment explanation
Indices: 82591865--82591960 Score: 122
Period size: 40 Copynumber: 2.4 Consensus size: 40
82591855 ACTATGTTCG
* * *
82591865 GCACTAAGTGTGCAATTTGAAATAGCTTCGGCTATAAATA
1 GCACTAAGTGTGCAATTTAAAAGAGCTTCGACTATAAATA
** *
82591905 GCACTAAGTGTGCGAA-TTAAAAGAGCTTCGACTATATGTG
1 GCACTAAGTGTGC-AATTTAAAAGAGCTTCGACTATAAATA
82591945 GCACTAAGTGTGCAAT
1 GCACTAAGTGTGCAAT
82591961 ATTGAGATAG
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
39 2 0.04
40 44 0.92
41 2 0.04
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (40 bp):
GCACTAAGTGTGCAATTTAAAAGAGCTTCGACTATAAATA
Found at i:82595786 original size:36 final size:37
Alignment explanation
Indices: 82595739--82595812 Score: 132
Period size: 36 Copynumber: 2.0 Consensus size: 37
82595729 GTATGAGGTG
*
82595739 TTACTAAGCTTAATTTAACAT-TTTTAGAACTTTGGA
1 TTACTAAGCTTAATTTAACATGTTTTACAACTTTGGA
82595775 TTACTAAGCTTAATTTAACATGTTTTACAACTTTGGA
1 TTACTAAGCTTAATTTAACATGTTTTACAACTTTGGA
82595812 T
1 T
82595813 CATTGTTTCT
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
36 21 0.58
37 15 0.42
ACGTcount: A:0.32, C:0.12, G:0.11, T:0.45
Consensus pattern (37 bp):
TTACTAAGCTTAATTTAACATGTTTTACAACTTTGGA
Found at i:82597105 original size:47 final size:49
Alignment explanation
Indices: 82597029--82597161 Score: 172
Period size: 47 Copynumber: 2.8 Consensus size: 49
82597019 TGTAACCCGC
82597029 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
* *
82597079 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
82597122 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
82597162 TCAACCATCC
Statistics
Matches: 72, Mismatches: 4, Indels: 15
0.79 0.04 0.16
Matches are distributed among these distances:
42 2 0.03
43 4 0.06
44 2 0.03
45 2 0.03
46 29 0.40
47 30 0.42
48 2 0.03
49 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:82597177 original size:46 final size:44
Alignment explanation
Indices: 82597037--82597177 Score: 135
Period size: 46 Copynumber: 3.0 Consensus size: 44
82597027 GCCCATAAGC
*
82597037 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT-AGT
* * *
82597084 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCTAGT
82597130 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CTAGT
82597176 GA
1 GA
82597178 CATGTCACTT
Statistics
Matches: 79, Mismatches: 8, Indels: 15
0.77 0.08 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 33 0.42
47 31 0.39
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (44 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCTAGT
Found at i:82610209 original size:42 final size:42
Alignment explanation
Indices: 82610082--82610209 Score: 134
Period size: 42 Copynumber: 3.0 Consensus size: 42
82610072 CACACAATAC
* * *
82610082 CATACCAATGCCATATCCCAAATAT-GTCTTACATGTAATCT
1 CATATCAATGCCATATCCCAGATATGGTCTTACACGTAATCT
* * * * * *
82610123 CGTATCGATGCCAATAGCCCGGCTATGGTCTTACAC-AAAGTCT
1 CATATCAATGCC-ATATCCCAGATATGGTCTTACACGTAA-TCT
*
82610166 CATATCAATGTCATATCCCAGATATGGTCTTACACGTAATCT
1 CATATCAATGCCATATCCCAGATATGGTCTTACACGTAATCT
82610208 CA
1 CA
82610210 GTAGCCCTAA
Statistics
Matches: 67, Mismatches: 16, Indels: 7
0.74 0.18 0.08
Matches are distributed among these distances:
41 9 0.13
42 36 0.54
43 22 0.33
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.30
Consensus pattern (42 bp):
CATATCAATGCCATATCCCAGATATGGTCTTACACGTAATCT
Found at i:82613687 original size:42 final size:42
Alignment explanation
Indices: 82613575--82613738 Score: 179
Period size: 42 Copynumber: 3.9 Consensus size: 42
82613565 TACCATACCA
* * * *
82613575 ATGCCATATCCAAGATATGGTCTTACATTGGA-TCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACA-CGAAGTCTCATATCG
* * * *
82613617 ATGCTAATAGCTCAGCTATGGTCTTACACGAAGTCTCATATCG
1 ATGC-CATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
*
82613660 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
* * *
82613702 ATGCCATAACCCAAATATGGTCGTACAC-ATAGTCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGA-AGTCTCA
82613739 GTAACTCTAA
Statistics
Matches: 103, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
41 1 0.01
42 71 0.69
43 31 0.30
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
Found at i:82615244 original size:29 final size:29
Alignment explanation
Indices: 82615202--82615261 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
82615192 CTTACTTAAC
82615202 TTAGCAAGCAACTACTTATCCCACAGAAT
1 TTAGCAAGCAACTACTTATCCCACAGAAT
82615231 TTAGCAAGCAACTACTTATCCCACAGAAT
1 TTAGCAAGCAACTACTTATCCCACAGAAT
82615260 TT
1 TT
82615262 GTAAAACAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.37, C:0.27, G:0.10, T:0.27
Consensus pattern (29 bp):
TTAGCAAGCAACTACTTATCCCACAGAAT
Found at i:82615271 original size:29 final size:29
Alignment explanation
Indices: 82615210--82615271 Score: 90
Period size: 29 Copynumber: 2.1 Consensus size: 29
82615200 ACTTAGCAAG
* *
82615210 CAACTACTTATCCCACAGAATTTAGCAAG
1 CAACTACTTATCCCACAGAATTTAGAAAA
82615239 CAACTACTTATCCCACAGAATTT-GTAAAA
1 CAACTACTTATCCCACAGAATTTAG-AAAA
82615268 CAAC
1 CAAC
82615272 CCTTACATGC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 1 0.03
29 29 0.97
ACGTcount: A:0.40, C:0.27, G:0.08, T:0.24
Consensus pattern (29 bp):
CAACTACTTATCCCACAGAATTTAGAAAA
Found at i:82617241 original size:27 final size:27
Alignment explanation
Indices: 82617211--82617265 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
82617201 AAGAAGAGAG
82617211 TAAGCATAAATGCTTAGTAAGCTCACA
1 TAAGCATAAATGCTTAGTAAGCTCACA
82617238 TAAGCATAAATGCTTAGTAAGCTCACA
1 TAAGCATAAATGCTTAGTAAGCTCACA
82617265 T
1 T
82617266 GCAAATAGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (27 bp):
TAAGCATAAATGCTTAGTAAGCTCACA
Found at i:82617701 original size:46 final size:46
Alignment explanation
Indices: 82617578--82617703 Score: 191
Period size: 46 Copynumber: 2.7 Consensus size: 46
82617568 TGTAATCCCC
* * * * *
82617578 CCATAAGTGAATTCGGACTCAACTCAACGGGCTCGAGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAGCGCTCGCAT
82617624 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG-GACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAG-CGCTCGCAT
82617670 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
82617704 AGATGCCCAA
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
45 1 0.01
46 73 0.99
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAGCGCTCGCAT
Found at i:82620166 original size:29 final size:29
Alignment explanation
Indices: 82620126--82620198 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
82620116 TTATCGATCA
*
82620126 ATGAAAAAGGATGGTTTTCACCATCGATT
1 ATGAAAAGGGATGGTTTTCACCATCGATT
* * * **
82620155 ATTAAAAGGGATAGTTTTGAGTATCGATT
1 ATGAAAAGGGATGGTTTTCACCATCGATT
82620184 ATGAAAAGGGATGGT
1 ATGAAAAGGGATGGT
82620199 GACGACCATC
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.32
Consensus pattern (29 bp):
ATGAAAAGGGATGGTTTTCACCATCGATT
Found at i:82620208 original size:58 final size:58
Alignment explanation
Indices: 82620145--82620308 Score: 177
Period size: 58 Copynumber: 2.8 Consensus size: 58
82620135 GATGGTTTTC
* * * * *
82620145 ACCATCGATTATTAAAAGGGATAGTTTTGAGTATCGATTATGAAAAGGGATGGTGACG
1 ACCATCGATTATGAAAAGGGATAGTTTCGACTATCGACTATGAAAAGGGAAGGTGACG
* *
82620203 ACCATCG-TAAATGAAATGGGATAGTTTCGACTATCGACTATGAAAAGGGAAGGTGACG
1 ACCATCGAT-TATGAAAAGGGATAGTTTCGACTATCGACTATGAAAAGGGAAGGTGACG
* * * ** * *
82620261 ATCATCAATTAATGAAAAGGGATGGTGACGACCATCGAATATGAAAAG
1 ACCATCGATT-ATGAAAAGGGATAGTTTCGACTATCGACTATGAAAAG
82620309 AGGTGGTTAT
Statistics
Matches: 87, Mismatches: 16, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
57 1 0.01
58 54 0.62
59 32 0.37
ACGTcount: A:0.38, C:0.12, G:0.26, T:0.24
Consensus pattern (58 bp):
ACCATCGATTATGAAAAGGGATAGTTTCGACTATCGACTATGAAAAGGGAAGGTGACG
Found at i:82620209 original size:29 final size:29
Alignment explanation
Indices: 82620145--82620330 Score: 144
Period size: 29 Copynumber: 6.4 Consensus size: 29
82620135 GATGGTTTTC
* * ***
82620145 ACCATCGATTATTAAAAGGGATAGTTTTG
1 ACCATCGATTATGAAAAGGGATGGTGACG
**
82620174 AGTATCGATTATGAAAAGGGATGGTGACG
1 ACCATCGATTATGAAAAGGGATGGTGACG
* * * **
82620203 ACCATCG-TAAATGAAATGGGATAGTTTCG
1 ACCATCGAT-TATGAAAAGGGATGGTGACG
* * *
82620232 ACTATCGACTATGAAAAGGGAAGGTGACG
1 ACCATCGATTATGAAAAGGGATGGTGACG
* *
82620261 ATCATCAATTAATGAAAAGGGATGGTGACG
1 ACCATCGATT-ATGAAAAGGGATGGTGACG
* * *
82620291 ACCATCGAATATGAAAAGAGG-TGGTTATG
1 ACCATCGATTATGAAAAG-GGATGGTGACG
82620320 ACCATCG-TTAT
1 ACCATCGATTAT
82620331 CACACTTTGT
Statistics
Matches: 120, Mismatches: 33, Indels: 9
0.74 0.20 0.06
Matches are distributed among these distances:
28 4 0.03
29 89 0.74
30 27 0.22
ACGTcount: A:0.36, C:0.12, G:0.26, T:0.26
Consensus pattern (29 bp):
ACCATCGATTATGAAAAGGGATGGTGACG
Found at i:82620304 original size:59 final size:58
Alignment explanation
Indices: 82620177--82620308 Score: 156
Period size: 59 Copynumber: 2.3 Consensus size: 58
82620167 AGTTTTGAGT
* * * * ** *
82620177 ATCGATTATGAAAAGGGATGGTGACGACCATCGTAAATGAAATGGGATAGTTTCGACT
1 ATCGAATATGAAAAGGGAAGGTGACGACCATCATAAATGAAAAGGGATAGTGACGACC
* * * *
82620235 ATCGACTATGAAAAGGGAAGGTGACGATCATCAATTAATGAAAAGGGATGGTGACGACC
1 ATCGAATATGAAAAGGGAAGGTGACGACCATC-ATAAATGAAAAGGGATAGTGACGACC
82620294 ATCGAATATGAAAAG
1 ATCGAATATGAAAAG
82620309 AGGTGGTTAT
Statistics
Matches: 62, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
58 29 0.47
59 33 0.53
ACGTcount: A:0.39, C:0.12, G:0.27, T:0.22
Consensus pattern (58 bp):
ATCGAATATGAAAAGGGAAGGTGACGACCATCATAAATGAAAAGGGATAGTGACGACC
Found at i:82633386 original size:29 final size:29
Alignment explanation
Indices: 82633249--82633500 Score: 172
Period size: 29 Copynumber: 8.8 Consensus size: 29
82633239 GACTATCGAT
*
82633249 TATGAAAAAGAATGGTGACGACCATCAAC
1 TATGAAAAAGGATGGTGACGACCATCAAC
* *
82633278 TAT-AAAAATGGATGGTGATGACAATCAAC
1 TATGAAAAA-GGATGGTGACGACCATCAAC
* * * *
82633307 TATG--AAAGGTTGGCGATGACCATCAAA
1 TATGAAAAAGGATGGTGACGACCATCAAC
* *
82633334 TATGAAAAGGGATGGTGATGACCATCAAC
1 TATGAAAAAGGATGGTGACGACCATCAAC
* * **
82633363 TATGAAAAAGGATAGTGACAACCATTGTA-
1 TATGAAAAAGGATGGTGACGACCA-TCAAC
* * ** * * **
82633392 TATGAAAAGGGATAGTTTCAACTATTGAC
1 TATGAAAAAGGATGGTGACGACCATCAAC
* * *
82633421 TATG-AAATGGATAGTGACGACCATCAGC
1 TATGAAAAAGGATGGTGACGACCATCAAC
* * * *
82633449 TATGGAAAGGGATGGTGACGACCATCGAT
1 TATGAAAAAGGATGGTGACGACCATCAAC
* *
82633478 TAATGAAAAGGGATGGTAACGAC
1 T-ATGAAAAAGGATGGTGACGAC
82633501 AATAGAATAT
Statistics
Matches: 177, Mismatches: 38, Indels: 15
0.77 0.17 0.07
Matches are distributed among these distances:
27 20 0.11
28 30 0.17
29 106 0.60
30 21 0.12
ACGTcount: A:0.40, C:0.13, G:0.25, T:0.22
Consensus pattern (29 bp):
TATGAAAAAGGATGGTGACGACCATCAAC
Found at i:82633401 original size:58 final size:57
Alignment explanation
Indices: 82633224--82633532 Score: 198
Period size: 58 Copynumber: 5.4 Consensus size: 57
82633214 ATCAATTTTA
* * * * * *
82633224 AAAAGGGATGGT-TTCGACTATCGATTATGAAAAAGAATGGTGACGACCATCA-ACTATA
1 AAAAGGGATGGTGAT-GACCATCGACTATGAAAAAGGATAGTGACGACCAT-AGA-TATG
* * * * * * * *
82633282 AAAATGGATGGTGATGACAATCAACTATG--AAAGGTTGGCGATGACCATCAAATATG
1 AAAAGGGATGGTGATGACCATCGACTATGAAAAAGGATAGTGACGACCAT-AGATATG
* * *
82633338 AAAAGGGATGGTGATGACCATCAACTATGAAAAAGGATAGTGACAACCATTGTATATG
1 AAAAGGGATGGTGATGACCATCGACTATGAAAAAGGATAGTGACGACCATAG-ATATG
* * * * * * *
82633396 AAAAGGGATAGT-TTCAACTATTGACTATG-AAATGGATAGTGACGACCATCAGCTATG
1 AAAAGGGATGGTGAT-GACCATCGACTATGAAAAAGGATAGTGACGACCAT-AGATATG
* * * * * * *
82633453 GAAAGGGATGGTGACGACCATCGATTAATGAAAAGGGATGGTAACGACAATAGAATATG
1 AAAAGGGATGGTGATGACCATCGACT-ATGAAAAAGGATAGTGACGACCATAG-ATATG
* *
82633512 AAAAGGGGTGGTTATGACCAT
1 AAAAGGGATGGTGATGACCAT
82633533 AATTAGCACA
Statistics
Matches: 194, Mismatches: 46, Indels: 21
0.74 0.18 0.08
Matches are distributed among these distances:
56 47 0.24
57 41 0.21
58 68 0.35
59 38 0.20
ACGTcount: A:0.39, C:0.12, G:0.26, T:0.23
Consensus pattern (57 bp):
AAAAGGGATGGTGATGACCATCGACTATGAAAAAGGATAGTGACGACCATAGATATG
Found at i:82633513 original size:29 final size:29
Alignment explanation
Indices: 82633449--82633523 Score: 87
Period size: 30 Copynumber: 2.6 Consensus size: 29
82633439 GACCATCAGC
* * * * *
82633449 TATGGAAAGGGATGGTGACGACCATCGAT
1 TATGAAAAGGGATGGTAACGACAATAGAA
82633478 TAATGAAAAGGGATGGTAACGACAATAGAA
1 T-ATGAAAAGGGATGGTAACGACAATAGAA
*
82633508 TATGAAAAGGGGTGGT
1 TATGAAAAGGGATGGT
82633524 TATGACCATA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
29 15 0.38
30 24 0.62
ACGTcount: A:0.39, C:0.08, G:0.33, T:0.20
Consensus pattern (29 bp):
TATGAAAAGGGATGGTAACGACAATAGAA
Found at i:82640472 original size:43 final size:41
Alignment explanation
Indices: 82640325--82640473 Score: 117
Period size: 43 Copynumber: 3.5 Consensus size: 41
82640315 TGTGTTTTCG
*
82640325 TGTAAGACCACATCTGGGACATTGGCATCGACT-TATGATTTACA
1 TGTAAGACCACATCTGGGACA-TGGCATC-A-TATTTGA-TTACA
* * * * *
82640369 TGTAAGACCATATTTAGGG-CATCGACATTC-TATTTGATTTCG
1 TGTAAGACCACATCT-GGGACAT-GGCA-TCATATTTGATTACA
82640411 TGTAAGACC-CTATCTGGGACAGTGGCATCAATATTTGATTACA
1 TGTAAGACCAC-ATCTGGGACA-TGGCATC-ATATTTGATTACA
*
82640454 TGTAAGACCACATTTGGGAC
1 TGTAAGACCACATCTGGGAC
82640474 GTTGGTATAG
Statistics
Matches: 83, Mismatches: 12, Indels: 21
0.72 0.10 0.18
Matches are distributed among these distances:
41 5 0.06
42 21 0.25
43 33 0.40
44 19 0.23
45 5 0.06
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.32
Consensus pattern (41 bp):
TGTAAGACCACATCTGGGACATGGCATCATATTTGATTACA
Found at i:82647200 original size:15 final size:16
Alignment explanation
Indices: 82647171--82647200 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
82647161 CAAACATGTT
82647171 TTAACACATTATCAAA
1 TTAACACATTATCAAA
82647187 TTAACACA-TATCAA
1 TTAACACATTATCAA
82647201 CAAGGCACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:82662472 original size:12 final size:11
Alignment explanation
Indices: 82662444--82662468 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
82662434 AGCAATTTGT
82662444 ATGAAATAAAA
1 ATGAAATAAAA
82662455 ATGAAATAAAA
1 ATGAAATAAAA
82662466 ATG
1 ATG
82662469 GAAAAAATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.12, T:0.20
Consensus pattern (11 bp):
ATGAAATAAAA
Found at i:82663498 original size:39 final size:39
Alignment explanation
Indices: 82663442--82663520 Score: 122
Period size: 39 Copynumber: 2.0 Consensus size: 39
82663432 TGCATTATGG
* * *
82663442 ATTTAGCCCGGAAGGGTAATCCGGTTAGGGTTTGAATTT
1 ATTTAGCCCAGAAGGGTAATCCGATTAGGGTCTGAATTT
*
82663481 ATTTAGCCCAGATGGGTAATCCGATTAGGGTCTGAATTT
1 ATTTAGCCCAGAAGGGTAATCCGATTAGGGTCTGAATTT
82663520 A
1 A
82663521 GCCTGGCTAG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.25, C:0.14, G:0.28, T:0.33
Consensus pattern (39 bp):
ATTTAGCCCAGAAGGGTAATCCGATTAGGGTCTGAATTT
Found at i:82680272 original size:39 final size:39
Alignment explanation
Indices: 82680223--82680312 Score: 153
Period size: 39 Copynumber: 2.3 Consensus size: 39
82680213 TTTAAGCCCA
*
82680223 GATATATTTCCAGCACATAGCCTACGGACCTCAAGTCCG
1 GATATGTTTCCAGCACATAGCCTACGGACCTCAAGTCCG
* *
82680262 GATATGTTTCCAGCACGTAGCCTGCGGACCTCAAGTCCG
1 GATATGTTTCCAGCACATAGCCTACGGACCTCAAGTCCG
82680301 GATATGTTTCCA
1 GATATGTTTCCA
82680313 AGTATCATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 48 1.00
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (39 bp):
GATATGTTTCCAGCACATAGCCTACGGACCTCAAGTCCG
Found at i:82692993 original size:21 final size:22
Alignment explanation
Indices: 82692969--82693009 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
82692959 CACTAAACAC
82692969 AGGGGC-ACACACCCGTGTGGG
1 AGGGGCAACACACCCGTGTGGG
*
82692990 AGGGGCAACACGCCCGTGTG
1 AGGGGCAACACACCCGTGTG
82693010 ACCAATTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.20, C:0.29, G:0.41, T:0.10
Consensus pattern (22 bp):
AGGGGCAACACACCCGTGTGGG
Found at i:82698079 original size:48 final size:46
Alignment explanation
Indices: 82698022--82698124 Score: 127
Period size: 46 Copynumber: 2.2 Consensus size: 46
82698012 TACCTGAATT
* *
82698022 ATTCTTGTCTCC-AATGCCATATATATATAATATGGGCTTACATGGCTC
1 ATTCCTGTCTCCAAAT-CCATATA-A-ATAATATGGACTTACATGGCTC
* *
82698070 ATTCCTGTCTCCAAATCCATATAACTGATATGGACTTACATGGCTC
1 ATTCCTGTCTCCAAATCCATATAAATAATATGGACTTACATGGCTC
*
82698116 ATTTCTGTC
1 ATTCCTGTC
82698125 CTGTCCTGTC
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
46 27 0.55
47 1 0.02
48 18 0.37
49 3 0.06
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (46 bp):
ATTCCTGTCTCCAAATCCATATAAATAATATGGACTTACATGGCTC
Found at i:82713137 original size:40 final size:40
Alignment explanation
Indices: 82713036--82713256 Score: 223
Period size: 40 Copynumber: 5.5 Consensus size: 40
82713026 TATTCGAATG
* * *
82713036 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGACT
* * *
82713077 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * * * *
82713117 ATATCCGGGCCAAAAACCGAAGGCATTTGTGCTAGCGAAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * * *
82713157 ATATCCGGGCTAAGTCCCAAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* **
82713197 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
82713236 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
82713257 ATACTTGGGT
Statistics
Matches: 148, Mismatches: 31, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
37 1 0.01
38 13 0.09
39 15 0.10
40 91 0.61
41 28 0.19
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:82718685 original size:59 final size:59
Alignment explanation
Indices: 82718593--82718706 Score: 201
Period size: 59 Copynumber: 1.9 Consensus size: 59
82718583 CCAAATACCG
*
82718593 TGCTAGGCGGGTCATATAAGGGCCAATGGATATGACTCCCTTCCCATGCCGCTCCACCC
1 TGCTAGGCGAGTCATATAAGGGCCAATGGATATGACTCCCTTCCCATGCCGCTCCACCC
* *
82718652 TGCTAGGTGAGTCATATAAGGGCCAATGGATATGACTCCCTTCCTATGCCGCTCC
1 TGCTAGGCGAGTCATATAAGGGCCAATGGATATGACTCCCTTCCCATGCCGCTCC
82718707 GTCTGATTGC
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 52 1.00
ACGTcount: A:0.21, C:0.31, G:0.24, T:0.25
Consensus pattern (59 bp):
TGCTAGGCGAGTCATATAAGGGCCAATGGATATGACTCCCTTCCCATGCCGCTCCACCC
Found at i:82731044 original size:38 final size:39
Alignment explanation
Indices: 82730973--82731103 Score: 185
Period size: 39 Copynumber: 3.4 Consensus size: 39
82730963 GCTACTCGTT
*
82730973 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGACATAACCCGGATT-TAGTAACTCGCA
82731013 CAAATGCCTTCGGAC-TAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGACATAACCCGGATTTAGTAACTCGCA
* * * *
82731051 CCAATGCCTTCGGGCTTAACCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGACATAACCCGGATTTAGTAACTCGCA
82731090 CAAATGCCTTCGGA
1 CAAATGCCTTCGGA
82731104 TCTTAGTCTG
Statistics
Matches: 83, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
38 32 0.39
39 40 0.48
40 11 0.13
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGACATAACCCGGATTTAGTAACTCGCA
Found at i:82739150 original size:79 final size:81
Alignment explanation
Indices: 82739041--82739223 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
82739031 TACTCGTTCA
* *
82739041 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
82739104 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
82739121 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
82739184 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
82739200 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
82739224 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:82739223 original size:40 final size:40
Alignment explanation
Indices: 82739020--82739223 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
82739010 CGGAATTTAA
** *
82739020 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
82739060 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
82739100 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
82739139 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
82739179 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
82739219 CCGGA
1 CCGGA
82739224 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:82742356 original size:27 final size:27
Alignment explanation
Indices: 82742326--82742503 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
82742316 ATATTGAGTC
* * * *
82742326 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
82742353 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
82742380 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
82742408 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
82742435 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
82742462 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
82742489 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
82742504 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:82742465 original size:82 final size:81
Alignment explanation
Indices: 82742347--82742502 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
82742337 TGCTATATAA
* *
82742347 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
82742412 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
82742429 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
82742493 CACTTAGTGC
65 CACTTAGTGC
82742503 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:82746531 original size:40 final size:40
Alignment explanation
Indices: 82746431--82746695 Score: 340
Period size: 40 Copynumber: 6.7 Consensus size: 40
82746421 GCTCCTCGTT
* * ** *
82746431 CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
*
82746471 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
82746510 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
*
82746550 CGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
* *
82746590 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
* * * * *
82746630 CGAATGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCA
*
82746671 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
82746696 CAGCATTCAA
Statistics
Matches: 205, Mismatches: 15, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
39 38 0.19
40 157 0.77
41 10 0.05
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
Found at i:82754202 original size:40 final size:40
Alignment explanation
Indices: 82754102--82754366 Score: 347
Period size: 40 Copynumber: 6.7 Consensus size: 40
82754092 GCTCCTCGTT
* * ** *
82754102 CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
*
82754142 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
82754181 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
**
82754221 CGTATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
*
82754261 CGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
* * * * * *
82754301 CGAATGCCTTCGGAACTTAATCCGGATATATTC-ACTTAGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTA-ACAAC-TCGCA
*
82754342 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
82754367 CAGCATTCAA
Statistics
Matches: 205, Mismatches: 17, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
39 35 0.17
40 162 0.79
41 8 0.04
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
Found at i:82765285 original size:30 final size:30
Alignment explanation
Indices: 82765251--82765319 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
82765241 TGTGGACTGA
82765251 CCATGTGTCACGCACGGCCTAGATACACAC
1 CCATGTGTCACGCACGGCCTAGATACACAC
82765281 CCATGTGTCACGCACGGCCTAGATACACAC
1 CCATGTGTCACGCACGGCCTAGATACACAC
*
82765311 CCGTGTGTC
1 CCATGTGTC
82765320 TACCCGTGTG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.23, C:0.36, G:0.22, T:0.19
Consensus pattern (30 bp):
CCATGTGTCACGCACGGCCTAGATACACAC
Found at i:82769881 original size:48 final size:48
Alignment explanation
Indices: 82769829--82770019 Score: 256
Period size: 48 Copynumber: 4.0 Consensus size: 48
82769819 ATAGTTTTAT
* * *
82769829 ATGGGACCTCATATCGATTCCAATTCCATATCCCAGATATGGTCTTAC
1 ATGGGATCTCATATCGATGCCAATGCCATATCCCAGATATGGTCTTAC
*
82769877 ATGGGATCTCATGTCGATGCCAATGCCATATCCCAGATATGGTCTTAC
1 ATGGGATCTCATATCGATGCCAATGCCATATCCCAGATATGGTCTTAC
* * * * * *
82769925 ACGGGATCTCATCTCGATGCCTATGTCATATCCCAAATACGGTCTTAC
1 ATGGGATCTCATATCGATGCCAATGCCATATCCCAGATATGGTCTTAC
* * * *
82769973 AAGGGATCTCATATTGATGCCGATGCCAAATCCCAGATATGGTCTTA
1 ATGGGATCTCATATCGATGCCAATGCCATATCCCAGATATGGTCTTA
82770020 TACAAGATTT
Statistics
Matches: 125, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 125 1.00
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (48 bp):
ATGGGATCTCATATCGATGCCAATGCCATATCCCAGATATGGTCTTAC
Found at i:82769886 original size:96 final size:96
Alignment explanation
Indices: 82769752--82770007 Score: 228
Period size: 96 Copynumber: 2.7 Consensus size: 96
82769742 GATCACACAT
* * * ** ** *
82769752 CAATGTCAATAGCCCAGCTATGGTCTTACACGAAATCTCATAAC-AGTGCTGATGCCATGTCCCA
1 CAATGTC-ATATCCCAGATATGGTCTTACAAGGGATCTCATAACGA-TGCCAATGCCATATCCCA
* * * *
82769816 AAAATAGTTTTATATGGGACCTCATATCGATTC
64 AAAATAGTCTTACACGGGACCTCATATCGATGC
* ** *
82769849 CAAT-TCCATATCCCAGATATGGTCTTACATGGGATCTCATGTCGATGCCAATGCCATATCCCAG
1 CAATGT-CATATCCCAGATATGGTCTTACAAGGGATCTCATAACGATGCCAATGCCATATCCCAA
* * * *
82769913 ATATGGTCTTACACGGGATCTCATCTCGATGC
65 AAATAGTCTTACACGGGACCTCATATCGATGC
* * * ** * *
82769945 CTATGTCATATCCCAAATACGGTCTTACAAGGGATCTCATATTGATGCCGATGCCAAATCCCA
1 CAATGTCATATCCCAGATATGGTCTTACAAGGGATCTCATAACGATGCCAATGCCATATCCCA
82770008 GATATGGTCT
Statistics
Matches: 129, Mismatches: 27, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
96 122 0.95
97 7 0.05
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.29
Consensus pattern (96 bp):
CAATGTCATATCCCAGATATGGTCTTACAAGGGATCTCATAACGATGCCAATGCCATATCCCAAA
AATAGTCTTACACGGGACCTCATATCGATGC
Found at i:82784133 original size:29 final size:29
Alignment explanation
Indices: 82784100--82784196 Score: 88
Period size: 29 Copynumber: 3.3 Consensus size: 29
82784090 ATCGATTAAA
*
82784100 GAAAAGGGATAGTTTCGATTATCGACTAT
1 GAAAAGGGATAGTTTCGAATATCGACTAT
* ** ** *
82784129 GAAAAGGGATGGTGACGACCATCGAAC-AC
1 GAAAAGGGATAGTTTCGAATATCG-ACTAT
* **
82784158 GAAAAGGGATAGTTTTGAATATCGGTTAT
1 GAAAAGGGATAGTTTCGAATATCGACTAT
82784187 GAAAAGGGAT
1 GAAAAGGGAT
82784197 GGTGATGACC
Statistics
Matches: 51, Mismatches: 15, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
29 49 0.96
30 2 0.04
ACGTcount: A:0.37, C:0.10, G:0.29, T:0.24
Consensus pattern (29 bp):
GAAAAGGGATAGTTTCGAATATCGACTAT
Found at i:82784181 original size:58 final size:58
Alignment explanation
Indices: 82784100--82784225 Score: 182
Period size: 58 Copynumber: 2.2 Consensus size: 58
82784090 ATCGATTAAA
*
82784100 GAAAAGGGATAGTTTCGATTATCGACTATGAAAAGGGATGGTGACGACCATCGAAC-AC
1 GAAAAGGGATAGTTTCGAATATCGACTATGAAAAGGGATGGTGACGACCATC-AACTAC
* ** * *
82784158 GAAAAGGGATAGTTTTGAATATCGGTTATGAAAAGGGATGGTGATGACCATCAACTAT
1 GAAAAGGGATAGTTTCGAATATCGACTATGAAAAGGGATGGTGACGACCATCAACTAC
82784216 GAAAAGGGAT
1 GAAAAGGGAT
82784226 GGTGACGACC
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
57 3 0.05
58 58 0.95
ACGTcount: A:0.37, C:0.11, G:0.29, T:0.23
Consensus pattern (58 bp):
GAAAAGGGATAGTTTCGAATATCGACTATGAAAAGGGATGGTGACGACCATCAACTAC
Found at i:82784216 original size:29 final size:28
Alignment explanation
Indices: 82784184--82784326 Score: 153
Period size: 29 Copynumber: 5.0 Consensus size: 28
82784174 GAATATCGGT
*
82784184 TATGAAAAGGGATGGTGATGACCATCAA
1 TATGAAAAGGGATGGTGACGACCATCAA
*
82784212 CTATGAAAAGGGATGGTGACGACCATCGA
1 -TATGAAAAGGGATGGTGACGACCATCAA
* ** *
82784241 T-TGACAAAAGGAATGGTTTCGGCCATCGAA
1 TATG--AAAAGGGATGGTGACGACCATC-AA
*
82784271 TATGAAAAGGGATGGTGACGACCCTCGAA
1 TATGAAAAGGGATGGTGACGACCATC-AA
* *
82784300 TATGGAAAGGGATGGTTACGACCATCA
1 TATGAAAAGGGATGGTGACGACCATCA
82784327 TTTAGCACAC
Statistics
Matches: 95, Mismatches: 15, Indels: 9
0.80 0.13 0.08
Matches are distributed among these distances:
27 2 0.02
28 2 0.02
29 87 0.92
30 2 0.02
31 2 0.02
ACGTcount: A:0.35, C:0.15, G:0.29, T:0.20
Consensus pattern (28 bp):
TATGAAAAGGGATGGTGACGACCATCAA
Found at i:82784250 original size:87 final size:88
Alignment explanation
Indices: 82784120--82784325 Score: 249
Period size: 87 Copynumber: 2.4 Consensus size: 88
82784110 AGTTTCGATT
* * * **
82784120 ATCG-ACTATGAAAAGGGATGGTGACGACCATCGAACACGAAAAGGGATAGTTTTGAATATCGGT
1 ATCGAACTATGAAAAGGGATGGTGACGACCATCGAACACGAAAAGGAATAGTTTCGAACATCGAA
*
82784184 TATGAAAAGGGATGGTGATGACC
66 TATGAAAAGGGATGGTGACGACC
** * **
82784207 ATC-AACTATGAAAAGGGATGGTGACGACCATCGATTGAC-AAAAGGAATGGTTTCGGCCATCGA
1 ATCGAACTATGAAAAGGGATGGTGACGACCATCGA-ACACGAAAAGGAATAGTTTCGAACATCGA
82784270 ATATGAAAAGGGATGGTGACGACC
65 ATATGAAAAGGGATGGTGACGACC
* * *
82784294 CTCGAA-TATGGAAAGGGATGGTTACGACCATC
1 ATCGAACTATGAAAAGGGATGGTGACGACCATC
82784326 ATTTAGCACA
Statistics
Matches: 102, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
87 98 0.96
88 4 0.04
ACGTcount: A:0.35, C:0.15, G:0.29, T:0.21
Consensus pattern (88 bp):
ATCGAACTATGAAAAGGGATGGTGACGACCATCGAACACGAAAAGGAATAGTTTCGAACATCGAA
TATGAAAAGGGATGGTGACGACC
Found at i:82790063 original size:42 final size:46
Alignment explanation
Indices: 82790004--82790104 Score: 129
Period size: 48 Copynumber: 2.2 Consensus size: 46
82789994 TGTCCCAGAC
* *
82790004 ATGGTCTTACATAAAATCTCATATC-A-A-CGA-CATATCCTAGAT
1 ATGGTCTTACATAAAATCACATACCGATATCGATCATATCCTAGAT
*
82790046 ATGGTCTTACATGAAATCACATACCGATATCGATGTCATATCCTAGAT
1 ATGGTCTTACATAAAATCACATACCGATATCGA--TCATATCCTAGAT
82790094 ATGGTCTTACA
1 ATGGTCTTACA
82790105 CTTGCATAGG
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
42 22 0.44
43 1 0.02
44 1 0.02
45 3 0.06
48 23 0.46
ACGTcount: A:0.35, C:0.21, G:0.13, T:0.32
Consensus pattern (46 bp):
ATGGTCTTACATAAAATCACATACCGATATCGATCATATCCTAGAT
Found at i:82797999 original size:16 final size:16
Alignment explanation
Indices: 82797970--82798009 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
82797960 TAAACTTACT
*
82797970 TTTTTATTTTATTTTA
1 TTTTTATTTAATTTTA
*
82797986 TTTTTCTTTAATTTTA
1 TTTTTATTTAATTTTA
82798002 TTTTTATT
1 TTTTTATT
82798010 GCATCCTTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTTTATTTAATTTTA
Found at i:82800075 original size:13 final size:13
Alignment explanation
Indices: 82800053--82800092 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
82800043 GAAGCAATCG
*
82800053 CACACGGGCGTGT
1 CACACAGGCGTGT
82800066 CACACAGGCGTGT
1 CACACAGGCGTGT
82800079 CACACAGGCGTGT
1 CACACAGGCGTGT
82800092 C
1 C
82800093 CCTGTCGAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.20, C:0.33, G:0.33, T:0.15
Consensus pattern (13 bp):
CACACAGGCGTGT
Found at i:82803505 original size:13 final size:13
Alignment explanation
Indices: 82803487--82803520 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
82803477 AATATTATCT
82803487 ATTTAATCAATTA
1 ATTTAATCAATTA
*
82803500 ATTTAATTAATTA
1 ATTTAATCAATTA
*
82803513 AATTAATC
1 ATTTAATC
82803521 TCTCAATTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (13 bp):
ATTTAATCAATTA
Found at i:82803687 original size:19 final size:19
Alignment explanation
Indices: 82803646--82803685 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
82803636 ATGACTAATT
*
82803646 AATTTAATTATTATTTAAA
1 AATTTAATTATTAATTAAA
82803665 AATTTAATTATTTAATTAAA
1 AATTTAATTA-TTAATTAAA
82803685 A
1 A
82803686 TTAATTAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
AATTTAATTATTAATTAAA
Found at i:82814479 original size:27 final size:27
Alignment explanation
Indices: 82814431--82814508 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 27
82814421 AGGGCAAAAT
* * *
82814431 AGTCATTTTACCCTATAGGGGTATGTC
1 AGTCATTTTACACTACAAGGGTATGTC
* *
82814458 GGTCATTTTACACTACAAGGGTATTTC
1 AGTCATTTTACACTACAAGGGTATGTC
* *
82814485 AGTAATATTACACTACAAGGGTAT
1 AGTCATTTTACACTACAAGGGTAT
82814509 TTCGATAGTT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (27 bp):
AGTCATTTTACACTACAAGGGTATGTC
Found at i:82814533 original size:27 final size:27
Alignment explanation
Indices: 82814502--82814867 Score: 308
Period size: 27 Copynumber: 13.7 Consensus size: 27
82814492 TTACACTACA
* *
82814502 AGGGTATTTCGATAGTTTTATAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
82814529 GGGGTGTTTC-ATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
82814555 AGGGTATTTCAATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
*
82814582 AGGGTATTTC-AGT-ATTGTACAAATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * *
82814608 AGGGTGTTTTGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
82814635 AGGGTGTTTCGGTAATTTCACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
82814662 -GTGGTATTT-TAGTAATTTTACAAATTG
1 AG-GGTATTTCGA-TAATTTTACAAATCG
* *
82814689 AGGTTATTTC-AGTAATTTCAC-AATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* * *
82814715 AAGGTATTTCGGTAATTTTACAAATCA
1 AGGGTATTTCGATAATTTTACAAATCG
* *
82814742 AGGGTATTTCGGTAATTTTACAAATCA
1 AGGGTATTTCGATAATTTTACAAATCG
*
82814769 AGGGTGA-TTC-AGTAATTTTGCAAATCG
1 AGGGT-ATTTCGA-TAATTTTACAAATCG
82814796 AGGGTATTTCTG-TAATTTTACAAA-CTG
1 AGGGTATTTC-GATAATTTTACAAATC-G
* * *
82814823 AAGGTATTTC-AGTAATTTTATAAA-CT
1 AGGGTATTTCGA-TAATTTTACAAATCG
82814849 AGGGGTATTTCGATAATTT
1 A-GGGTATTTCGATAATTT
82814868 CTCTTTATTA
Statistics
Matches: 282, Mismatches: 37, Indels: 40
0.79 0.10 0.11
Matches are distributed among these distances:
26 66 0.23
27 213 0.76
28 3 0.01
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:82814562 original size:53 final size:53
Alignment explanation
Indices: 82814502--82814842 Score: 275
Period size: 53 Copynumber: 6.4 Consensus size: 53
82814492 TTACACTACA
* * * *
82814502 AGGGTATTTCGATAGTTTTATAAATCGGGGGTGTTTCATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTGTTTCATAATTTTACAAATCG
* * * *
82814555 AGGGTATTTCAATAATTTTACAAATTGAGGGTATTTCAGT-ATTGTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTGTTTCA-TAATTTTACAAATCG
* * * * *
82814608 AGGGTGTTTTGGTAATTTTACAAATCGAGGGTGTTTCGGTAATTTCACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTGTTTC-ATAATTTTACAAATCG
* * * * *
82814662 -GTGGTATTT-TAGTAATTTTACAAATTGAGGTTATTTCAGTAATTTCAC-AATCG
1 AG-GGTATTTCGA-TAATTTTACAAATCGAGGGTGTTTCA-TAATTTTACAAATCG
* * * * * *
82814715 AAGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAATCA
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTGTTTC-ATAATTTTACAAATCG
* * *
82814769 AGGGTGA-TTC-AGTAATTTTGCAAATCGAGGGTATTTCTGTAATTTTACAAA-CTG
1 AGGGT-ATTTCGA-TAATTTTACAAATCGAGGGTGTTTC-ATAATTTTACAAATC-G
*
82814823 AAGGTATTTC-AGTAATTTTA
1 AGGGTATTTCGA-TAATTTTA
82814843 TAAACTAGGG
Statistics
Matches: 233, Mismatches: 41, Indels: 27
0.77 0.14 0.09
Matches are distributed among these distances:
53 120 0.52
54 112 0.48
55 1 0.00
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (53 bp):
AGGGTATTTCGATAATTTTACAAATCGAGGGTGTTTCATAATTTTACAAATCG
Found at i:82814562 original size:80 final size:82
Alignment explanation
Indices: 82814475--82814842 Score: 380
Period size: 80 Copynumber: 4.6 Consensus size: 82
82814465 TTACACTACA
* * * * *
82814475 AGGGTATTTCAGTAATATTAC-ACTACAAGGGTATTTCGA-TAGTTTTATAAATCGGGGGTGTTT
1 AGGGTATTTCAGTAATTTTACAAAT-CAAGGGTATTTCGAGTAATTTTACAAATCGAGGGTGTTT
*
82814538 CA-TAATTTTACAAATTG
65 CAGTAATTTTACAAATCG
* ** * *
82814555 AGGGTATTTCAATAATTTTACAAATTGAGGGTATTTC-AGT-ATTGTACAAATCGAGGGTGTTTT
1 AGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTCGAGTAATTTTACAAATCGAGGGTGTTTC
*
82814618 GGTAATTTTACAAATCG
66 AGTAATTTTACAAATCG
* * * * * * * *
82814635 AGGGTGTTTCGGTAATTTCACAAATC-GGTGGTATTT-TAGTAATTTTACAAATTGAGGTTATTT
1 AGGGTATTTCAGTAATTTTACAAATCAAG-GGTATTTCGAGTAATTTTACAAATCGAGGGTGTTT
*
82814698 CAGTAATTTCAC-AATCG
65 CAGTAATTTTACAAATCG
* * * *
82814715 AAGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCG-GTAATTTTACAAATCAAGGGTGATTC
1 AGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTCGAGTAATTTTACAAATCGAGGGTGTTTC
*
82814779 AGTAATTTTGCAAATCG
66 AGTAATTTTACAAATCG
* *
82814796 AGGGTATTTCTGTAATTTTACAAACTGAA-GGTATTTC-AGTAATTTTA
1 AGGGTATTTCAGTAATTTTACAAA-TCAAGGGTATTTCGAGTAATTTTA
82814843 TAAACTAGGG
Statistics
Matches: 237, Mismatches: 40, Indels: 21
0.80 0.13 0.07
Matches are distributed among these distances:
79 20 0.08
80 140 0.59
81 74 0.31
82 3 0.01
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (82 bp):
AGGGTATTTCAGTAATTTTACAAATCAAGGGTATTTCGAGTAATTTTACAAATCGAGGGTGTTTC
AGTAATTTTACAAATCG
Found at i:82814651 original size:107 final size:107
Alignment explanation
Indices: 82814475--82814842 Score: 410
Period size: 107 Copynumber: 3.4 Consensus size: 107
82814465 TTACACTACA
* * * * *
82814475 AGGGTATTTCAGTAATATTAC-ACTAC-AAGGGTATTTCGATAGTTTTATAAATCGGGGGTGTTT
1 AGGGTATTTCAGTAAT-TTACAAAT-CGAA-GGTATTTCGGTAATTTTACAAATCGAGGGTGTTT
* * *
82814538 C-ATAATTTTACAAATTGAGGGTATTTCAATAATTTTACAAATTG
63 CGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATTG
* * *
82814582 AGGGTATTTCAGT-ATTGTACAAATCGAGGGTGTTTTGGTAATTTTACAAATCGAGGGTGTTTCG
1 AGGGTATTTCAGTAATT-TACAAATCGAAGGTATTTCGGTAATTTTACAAATCGAGGGTGTTTCG
* *
82814646 GTAATTTCACAAATCG-GTGGTATTTTAGTAATTTTACAAATTG
65 GTAATTTTACAAATCGAG-GGTATTTCAGTAATTTTACAAATTG
* * *
82814689 AGGTTATTTCAGTAATTT-CACAATCGAAGGTATTTCGGTAATTTTACAAATCAAGGGTATTTCG
1 AGGGTATTTCAGTAATTTACA-AATCGAAGGTATTTCGGTAATTTTACAAATCGAGGGTGTTTCG
* * *
82814753 GTAATTTTACAAATCAAGGGTGA-TTCAGTAATTTTGCAAATCG
65 GTAATTTTACAAATCGAGGGT-ATTTCAGTAATTTTACAAATTG
* *
82814796 AGGGTATTTCTGTAATTTTACAAA-CTGAAGGTATTTCAGTAATTTTA
1 AGGGTATTTCAGTAA-TTTACAAATC-GAAGGTATTTCGGTAATTTTA
82814843 TAAACTAGGG
Statistics
Matches: 222, Mismatches: 27, Indels: 23
0.82 0.10 0.08
Matches are distributed among these distances:
105 1 0.00
106 38 0.17
107 151 0.68
108 30 0.14
109 2 0.01
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (107 bp):
AGGGTATTTCAGTAATTTACAAATCGAAGGTATTTCGGTAATTTTACAAATCGAGGGTGTTTCGG
TAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAATTG
Found at i:82814697 original size:134 final size:133
Alignment explanation
Indices: 82814523--82814859 Score: 396
Period size: 134 Copynumber: 2.5 Consensus size: 133
82814513 ATAGTTTTAT
* * *
82814523 AAATCGGGGGTGTTTCA-TAATTTTACAAATTGAGGGTATTTCAATAATTTTACAAATTGAGGGT
1 AAATC-GGGGTATTTTAGTAATTTTACAAATTGA-GGTATTTCAGTAATTTTACAAATTGAGGGT
* * * * * *
82814587 ATTTCAGT-ATTGTACAAATCGAGGGTGTTTTGGTAATTTTACAAATCGAGGGTGTTTCGGTAAT
64 ATTTCAGTAATTGTACAAATCAAGGGTATTTCGGTAATTTTACAAATCAAGGGTGATTCAGTAAT
82814651 TTCAC
129 TTCAC
* * *
82814656 AAATCGGTGGTATTTTAGTAATTTTACAAATTGAGGTTATTTCAGTAATTTCAC-AATCGAAGGT
1 AAATCGG-GGTATTTTAGTAATTTTACAAATTGAGG-TATTTCAGTAATTTTACAAATTGAGGGT
* *
82814720 ATTTCGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAATCAAGGGTGATTCAGTAAT
64 ATTTCAGTAATTGTACAAATCAAGGGTATTTCGGTAATTTTACAAATCAAGGGTGATTCAGTAAT
**
82814785 TTTGC
129 TTCAC
* * *
82814790 AAATCGAGGGTATTTCT-GTAATTTTACAAACTGAAGGTATTTCAGTAATTTTATAAACT-AGGG
1 AAATCG-GGGTATTT-TAGTAATTTTACAAATTG-AGGTATTTCAGTAATTTTACAAATTGA-GG
82814853 GTATTTC
62 GTATTTC
82814860 GATAATTTCT
Statistics
Matches: 173, Mismatches: 22, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
132 2 0.01
133 29 0.17
134 127 0.73
135 15 0.09
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (133 bp):
AAATCGGGGTATTTTAGTAATTTTACAAATTGAGGTATTTCAGTAATTTTACAAATTGAGGGTAT
TTCAGTAATTGTACAAATCAAGGGTATTTCGGTAATTTTACAAATCAAGGGTGATTCAGTAATTT
CAC
Found at i:82815232 original size:28 final size:28
Alignment explanation
Indices: 82815183--82815246 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 28
82815173 TGGCCCCTTT
* *
82815183 AAGCCCAATCTCGTCCACATGGCCCATC
1 AAGCCCAATCACATCCACATGGCCCATC
* * *
82815211 AAGCCCAATCACATTCATATGGCCCATT
1 AAGCCCAATCACATCCACATGGCCCATC
*
82815239 AGGCCCAA
1 AAGCCCAA
82815247 CTACTTCCCA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.30, C:0.38, G:0.14, T:0.19
Consensus pattern (28 bp):
AAGCCCAATCACATCCACATGGCCCATC
Found at i:82824424 original size:22 final size:22
Alignment explanation
Indices: 82824384--82824425 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
82824374 AGGACCTAGT
*
82824384 TGTAAAAATGTTATAAAATGTG
1 TGTAAAAATGTGATAAAATGTG
* *
82824406 TGTAAAAGTGTGATTAAATG
1 TGTAAAAATGTGATAAAATG
82824426 AAAAATGTGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.21, T:0.36
Consensus pattern (22 bp):
TGTAAAAATGTGATAAAATGTG
Found at i:82833699 original size:16 final size:16
Alignment explanation
Indices: 82833678--82833713 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
82833668 GGCAAATCCC
82833678 GAAATGCCGAAAAGCT
1 GAAATGCCGAAAAGCT
*
82833694 GAAATGTCGAAAAGCT
1 GAAATGCCGAAAAGCT
82833710 GAAA
1 GAAA
82833714 GTCTAGCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.47, C:0.14, G:0.25, T:0.14
Consensus pattern (16 bp):
GAAATGCCGAAAAGCT
Found at i:82834007 original size:28 final size:29
Alignment explanation
Indices: 82833946--82834014 Score: 104
Period size: 28 Copynumber: 2.4 Consensus size: 29
82833936 TTCTTTCCAG
* *
82833946 ATGGGCCATATGAATGTGATTTGGGCCTA
1 ATGGGCCATATGAATGAGATTTGGGCCGA
82833975 ATGGGCCATATGAATGAGA-TTGGGCCGA
1 ATGGGCCATATGAATGAGATTTGGGCCGA
*
82834003 GTGGGCCATATG
1 ATGGGCCATATG
82834015 CATGTATGTA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.25, C:0.14, G:0.35, T:0.26
Consensus pattern (29 bp):
ATGGGCCATATGAATGAGATTTGGGCCGA
Found at i:82834101 original size:4 final size:4
Alignment explanation
Indices: 82834092--82834120 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
82834082 GACATAACAC
82834092 TTAA TTAA TTAA TTAA TTAA TTAA TTAA T
1 TTAA TTAA TTAA TTAA TTAA TTAA TTAA T
82834121 CGTGACTGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TTAA
Found at i:82838307 original size:39 final size:40
Alignment explanation
Indices: 82838251--82838350 Score: 166
Period size: 40 Copynumber: 2.5 Consensus size: 40
82838241 ATGTAGCTTG
* *
82838251 CGGACCTTAAGTTCGGATATAA-TTCCAGCACATAGCCTA
1 CGGACCCTAAGTCCGGATATAATTTCCAGCACATAGCCTA
*
82838290 CGGACCCTAAGTCCGGATATAATTTCCAGCACATAGCCTG
1 CGGACCCTAAGTCCGGATATAATTTCCAGCACATAGCCTA
82838330 CGGACCCTAAGTCCGGATATA
1 CGGACCCTAAGTCCGGATATA
82838351 CATCACTGAA
Statistics
Matches: 57, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
39 20 0.35
40 37 0.65
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
CGGACCCTAAGTCCGGATATAATTTCCAGCACATAGCCTA
Found at i:82846221 original size:40 final size:40
Alignment explanation
Indices: 82846125--82846243 Score: 195
Period size: 40 Copynumber: 3.0 Consensus size: 40
82846115 GCTCGTACAT
* * *
82846125 ATTTCCAACACGTAGCCTGCGGACCTTAAGTCCGGATATA
1 ATTTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATA
82846165 A-TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATA
1 ATTTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATA
*
82846204 ATTTCCAGCACATAGCCTGCAGACCCTAAGTCCGGATATA
1 ATTTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATA
82846244 CATCACTGAA
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
39 36 0.49
40 38 0.51
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (40 bp):
ATTTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATA
Done.