Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 25 of 349
Found at i:6816593 original size:15 final size:16
Alignment explanation
Indices: 6816573--6816620 Score: 55
Period size: 17 Copynumber: 3.1 Consensus size: 16
6816563 TAAGTAAATG
6816573 ATATTA-AATTATAAT
1 ATATTATAATTATAAT
*
6816588 ATATTATATATTATTAT
1 ATATTATA-ATTATAAT
*
6816605 ATAATATAATTA-AAT
1 ATATTATAATTATAAT
6816620 A
1 A
6816621 AATGAAATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
15 9 0.32
16 5 0.18
17 14 0.50
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
ATATTATAATTATAAT
Found at i:6817058 original size:22 final size:22
Alignment explanation
Indices: 6817030--6817072 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
6817020 GTTTTAAGTG
6817030 ATAAATTG-AAGAAAAATAAAGA
1 ATAAATTGTAA-AAAAATAAAGA
6817052 ATAAATTGTAAAAAAATAAAG
1 ATAAATTGTAAAAAAATAAAG
6817073 TTAGTATTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 18 0.90
23 2 0.10
ACGTcount: A:0.67, C:0.00, G:0.12, T:0.21
Consensus pattern (22 bp):
ATAAATTGTAAAAAAATAAAGA
Found at i:6817415 original size:27 final size:27
Alignment explanation
Indices: 6817383--6817434 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
6817373 GTATGTGTAT
*
6817383 GATTGAAA-AGTGTATTGAATTGGAATG
1 GATTGAAATAGTATATTG-ATTGGAATG
*
6817410 GATTGAAATTGTATATTGATTGGAA
1 GATTGAAATAGTATATTGATTGGAA
6817435 ATTGAATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.37, C:0.00, G:0.27, T:0.37
Consensus pattern (27 bp):
GATTGAAATAGTATATTGATTGGAATG
Found at i:6820783 original size:16 final size:17
Alignment explanation
Indices: 6820753--6820785 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
6820743 ATTTAAATGA
6820753 AACTGCATACATATTAC
1 AACTGCATACATATTAC
*
6820770 AACT-CATACGTATTAC
1 AACTGCATACATATTAC
6820786 CAAAAACAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.39, C:0.24, G:0.06, T:0.30
Consensus pattern (17 bp):
AACTGCATACATATTAC
Found at i:6823060 original size:29 final size:29
Alignment explanation
Indices: 6823026--6823091 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 29
6823016 ATAGAAGTTT
* *
6823026 AATTAAATTAATCACTCTATTATTAAATA
1 AATTAAATTAATCACTATATTATTAAAAA
* * * *
6823055 AATTAATTTAGTTATTATATTATTAAAAA
1 AATTAAATTAATCACTATATTATTAAAAA
6823084 AATTAAAT
1 AATTAAAT
6823092 AAGATTAATT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.44
Consensus pattern (29 bp):
AATTAAATTAATCACTATATTATTAAAAA
Found at i:6826073 original size:15 final size:16
Alignment explanation
Indices: 6826053--6826084 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
6826043 TACTAGATAG
6826053 ATATGAAATAA-TATA
1 ATATGAAATAAGTATA
6826068 ATATGAAATAAGTATA
1 ATATGAAATAAGTATA
6826084 A
1 A
6826085 AGTTTAAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.31
Consensus pattern (16 bp):
ATATGAAATAAGTATA
Found at i:6829101 original size:12 final size:12
Alignment explanation
Indices: 6829084--6829127 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
6829074 TGTCACGTAT
*
6829084 TTTTCTTTATTA
1 TTTTCTTTATAA
6829096 TTTTCTTTATAA
1 TTTTCTTTATAA
* *
6829108 ATTT-TTAATAA
1 TTTTCTTTATAA
6829119 TTTTCTTTA
1 TTTTCTTTA
6829128 ACATTACCAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
11 9 0.35
12 17 0.65
ACGTcount: A:0.25, C:0.07, G:0.00, T:0.68
Consensus pattern (12 bp):
TTTTCTTTATAA
Found at i:6831496 original size:21 final size:22
Alignment explanation
Indices: 6831457--6831497 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
6831447 TCAATTTTTT
*
6831457 CATTTTTAATTATTGATTTAAG
1 CATTTTAAATTATTGATTTAAG
*
6831479 CATTTTAAATT-TTTATTTA
1 CATTTTAAATTATTGATTTA
6831498 TTTATTTATG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.59
Consensus pattern (22 bp):
CATTTTAAATTATTGATTTAAG
Found at i:6833778 original size:13 final size:14
Alignment explanation
Indices: 6833757--6833785 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
6833747 ATTGATTAAA
6833757 AATTAAAATTAACT
1 AATTAAAATTAACT
6833771 AATT-AAATTAACT
1 AATTAAAATTAACT
6833784 AA
1 AA
6833786 AAAAAGAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAAATTAACT
Found at i:6845618 original size:22 final size:23
Alignment explanation
Indices: 6845592--6845639 Score: 71
Period size: 22 Copynumber: 2.1 Consensus size: 23
6845582 TTTAAAAGAG
*
6845592 TAATCCTATTAATATTAAAT-AT
1 TAATCCTATAAATATTAAATAAT
*
6845614 TAATCTTATAAATATTAAATAAT
1 TAATCCTATAAATATTAAATAAT
6845637 TAA
1 TAA
6845640 AATTTACGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (23 bp):
TAATCCTATAAATATTAAATAAT
Found at i:6849250 original size:23 final size:21
Alignment explanation
Indices: 6849203--6849250 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 21
6849193 GTCACTTGCC
6849203 TGTAAAAAGAAGGAAAAGACA
1 TGTAAAAAGAAGGAAAAGACA
6849224 -GTAAATAAGAGAGGAAAA-AGCA
1 TGTAAA-AAGA-AGGAAAAGA-CA
6849246 TGTAA
1 TGTAA
6849251 CAAGGCTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
20 5 0.22
21 5 0.22
22 9 0.39
23 4 0.17
ACGTcount: A:0.58, C:0.04, G:0.25, T:0.12
Consensus pattern (21 bp):
TGTAAAAAGAAGGAAAAGACA
Found at i:6849796 original size:20 final size:20
Alignment explanation
Indices: 6849760--6849803 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
6849750 CCTAGCATAT
*
6849760 ATACTATGTATACATTCTTA
1 ATACTATGCATACATTCTTA
*
6849780 ATACTATAGCATA-ATTCTTT
1 ATACTAT-GCATACATTCTTA
6849800 ATAC
1 ATAC
6849804 CGTATTATGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.36, C:0.16, G:0.05, T:0.43
Consensus pattern (20 bp):
ATACTATGCATACATTCTTA
Found at i:6849938 original size:18 final size:17
Alignment explanation
Indices: 6849889--6849938 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 17
6849879 ATTATACATG
6849889 TATATA-TATACTTTTTA
1 TATATAGTATA-TTTTTA
6849906 TATATAGTATCATTTTTA
1 TATATAGTAT-ATTTTTA
*
6849924 TATATCATTATATTT
1 TATAT-AGTATATTT
6849939 ATCATCTTAC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 6 0.21
18 18 0.62
19 5 0.17
ACGTcount: A:0.34, C:0.06, G:0.02, T:0.58
Consensus pattern (17 bp):
TATATAGTATATTTTTA
Found at i:6850008 original size:15 final size:15
Alignment explanation
Indices: 6849979--6850016 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
6849969 GCTTATTATT
*
6849979 TTATTT-TAACATTA
1 TTATTTATATCATTA
6849993 TTATTTATATCATTA
1 TTATTTATATCATTA
6850008 TTA-TTATAT
1 TTATTTATAT
6850017 TTTTTACCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 12 0.55
15 10 0.45
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (15 bp):
TTATTTATATCATTA
Found at i:6857244 original size:34 final size:35
Alignment explanation
Indices: 6857200--6857266 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
6857190 CTGTAAAATG
6857200 TTTTCCGTAAAATGAATT-CTGGAAAATATTTTAC
1 TTTTCCGTAAAATGAATTACTGGAAAATATTTTAC
* *
6857234 TTTTCTGTAAAATGACTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGAATTACTGGAAAATATTTT
6857267 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 16 0.53
35 14 0.47
ACGTcount: A:0.34, C:0.10, G:0.12, T:0.43
Consensus pattern (35 bp):
TTTTCCGTAAAATGAATTACTGGAAAATATTTTAC
Found at i:6858641 original size:27 final size:27
Alignment explanation
Indices: 6858611--6858680 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
6858601 AATAATCAAT
*
6858611 TCAATATCCAACAATGTTAAAACATA-A
1 TCAATATCCAACAAT-TCAAAACATATA
* *
6858638 TCAATATCTAACCAATTCAAGACATATA
1 TCAATATCCAA-CAATTCAAAACATATA
*
6858666 TCAAAATCCAACAAT
1 TCAATATCCAACAAT
6858681 CTAAAATCTG
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 22 0.61
28 14 0.39
ACGTcount: A:0.50, C:0.21, G:0.03, T:0.26
Consensus pattern (27 bp):
TCAATATCCAACAATTCAAAACATATA
Found at i:6866057 original size:16 final size:17
Alignment explanation
Indices: 6866032--6866074 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
6866022 GTTTTTTTAA
*
6866032 ATATTACTTTAATTTGT
1 ATATTGCTTTAATTTGT
*
6866049 -TATTGCTTTCATTTGT
1 ATATTGCTTTAATTTGT
6866065 ATAATTGCTT
1 AT-ATTGCTT
6866075 CTGGAAATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 14 0.64
17 1 0.05
18 7 0.32
ACGTcount: A:0.23, C:0.09, G:0.09, T:0.58
Consensus pattern (17 bp):
ATATTGCTTTAATTTGT
Found at i:6870023 original size:15 final size:15
Alignment explanation
Indices: 6870005--6870035 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
6869995 AAGCATACAT
6870005 AAAAAAAAAAGAAAA
1 AAAAAAAAAAGAAAA
*
6870020 AAAAAAGAAAGAAAA
1 AAAAAAAAAAGAAAA
6870035 A
1 A
6870036 GGAGGAGGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAGAAAA
Found at i:6870036 original size:10 final size:11
Alignment explanation
Indices: 6870005--6870035 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
6869995 AAGCATACAT
6870005 AAAAAAAAAAG
1 AAAAAAAAAAG
6870016 AAAAAAAAAAG
1 AAAAAAAAAAG
6870027 AAAGAAAAA
1 AAA-AAAAA
6870036 GGAGGAGGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.74
12 5 0.26
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:6873563 original size:64 final size:64
Alignment explanation
Indices: 6873462--6873589 Score: 256
Period size: 64 Copynumber: 2.0 Consensus size: 64
6873452 GAAGCAACCA
6873462 AACATGTATGCAAAGACGAAAGCTTGTTCACAAAGTTCACACAATGTGAAAATGACAATGTCTT
1 AACATGTATGCAAAGACGAAAGCTTGTTCACAAAGTTCACACAATGTGAAAATGACAATGTCTT
6873526 AACATGTATGCAAAGACGAAAGCTTGTTCACAAAGTTCACACAATGTGAAAATGACAATGTCTT
1 AACATGTATGCAAAGACGAAAGCTTGTTCACAAAGTTCACACAATGTGAAAATGACAATGTCTT
6873590 GTACATGGGA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 64 1.00
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.25
Consensus pattern (64 bp):
AACATGTATGCAAAGACGAAAGCTTGTTCACAAAGTTCACACAATGTGAAAATGACAATGTCTT
Found at i:6882574 original size:11 final size:9
Alignment explanation
Indices: 6882529--6882617 Score: 63
Period size: 9 Copynumber: 9.9 Consensus size: 9
6882519 ATTTTTAAAA
6882529 TTTAAACTTT
1 TTTAAA-TTT
*
6882539 TTTATATTT
1 TTTAAATTT
*
6882548 TTTTAATTT
1 TTTAAATTT
6882557 TTTAAATTT
1 TTTAAATTT
**
6882566 TTTAAA-AA
1 TTTAAATTT
*
6882574 TATAAATTT
1 TTTAAATTT
**
6882583 TGAAAATTT
1 TTTAAATTT
* *
6882592 TATAAATAT
1 TTTAAATTT
*
6882601 TTTGAATTT
1 TTTAAATTT
*
6882610 TTAAAATT
1 TTTAAATT
6882618 AGTTTGAATT
Statistics
Matches: 59, Mismatches: 19, Indels: 3
0.73 0.23 0.04
Matches are distributed among these distances:
8 5 0.08
9 49 0.83
10 5 0.08
ACGTcount: A:0.38, C:0.01, G:0.02, T:0.58
Consensus pattern (9 bp):
TTTAAATTT
Found at i:6882616 original size:18 final size:20
Alignment explanation
Indices: 6882579--6882627 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
6882569 AAAAATATAA
*
6882579 ATTTTGAAAATTTTATAAA-T
1 ATTTTG-AATTTTTATAAATT
6882599 ATTTTGAATTTTTA-AAATT
1 ATTTTGAATTTTTATAAATT
*
6882618 AGTTTGAATT
1 ATTTTGAATT
6882628 ATTTTGTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 3 0.12
19 17 0.65
20 6 0.23
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (20 bp):
ATTTTGAATTTTTATAAATT
Found at i:6887492 original size:31 final size:31
Alignment explanation
Indices: 6887451--6887517 Score: 109
Period size: 31 Copynumber: 2.2 Consensus size: 31
6887441 TTTAAAAAGT
*
6887451 AAAAATTTAATACTATTTAATATA-ATTATTA
1 AAAAAATTAATACTATTTAATA-ACATTATTA
6887482 AAAAAATTAATACTATTTAATAACATTATTA
1 AAAAAATTAATACTATTTAATAACATTATTA
6887513 AAAAA
1 AAAAA
6887518 TAAAAAAATA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
30 1 0.03
31 33 0.97
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (31 bp):
AAAAAATTAATACTATTTAATAACATTATTA
Found at i:6888997 original size:52 final size:52
Alignment explanation
Indices: 6888921--6889103 Score: 188
Period size: 52 Copynumber: 3.5 Consensus size: 52
6888911 TATTATACTG
* * * **
6888921 ATGCCATATCCCGGATATGGTCTTACATGGGAGCACTTATCACTT-TTCTCCA
1 ATGCCATAGCCCAGCTATGGTCTTACA-CAGAGCACTTATCACTTGTTCTCCA
* * * *
6888973 ATGCCATAGCCCAGCTATGATCTTATACAGATCACTTATCACTTGTTTTCCA
1 ATGCCATAGCCCAGCTATGGTCTTACACAGAGCACTTATCACTTGTTCTCCA
* * * * * *
6889025 ATGCCATAGCCCAGCTATGGTCTTATACAAATATCACTTATCACTTGTTTTTCG
1 ATGCCATAGCCCAGCTATGGTC-T-TACACAGAGCACTTATCACTTGTTCTCCA
*
6889079 ATGCCATAACCCAGCTATGGTCTTA
1 ATGCCATAGCCCAGCTATGGTCTTA
6889104 TACGGATATC
Statistics
Matches: 112, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
51 14 0.12
52 51 0.46
53 2 0.02
54 45 0.40
ACGTcount: A:0.26, C:0.26, G:0.14, T:0.34
Consensus pattern (52 bp):
ATGCCATAGCCCAGCTATGGTCTTACACAGAGCACTTATCACTTGTTCTCCA
Found at i:6889067 original size:54 final size:52
Alignment explanation
Indices: 6888954--6889117 Score: 231
Period size: 54 Copynumber: 3.1 Consensus size: 52
6888944 TACATGGGAG
* * *
6888954 CACTTATCACTT-TTCTCCAATGCCATAGCCCAGCTATGATCTTATACAGAT
1 CACTTATCACTTGTTTTCCAATGCCATAGCCCAGCTATGGTCTTATACATAT
6889005 CACTTATCACTTGTTTTCCAATGCCATAGCCCAGCTATGGTCTTATACAAATAT
1 CACTTATCACTTGTTTTCCAATGCCATAGCCCAGCTATGGTCTTATAC--ATAT
* * *
6889059 CACTTATCACTTGTTTTTCGATGCCATAACCCAGCTATGGTCTTATACGGATAT
1 CACTTATCACTTGTTTTCCAATGCCATAGCCCAGCTATGGTCTTATAC--ATAT
6889113 CACTT
1 CACTT
6889118 GCAATACCCC
Statistics
Matches: 102, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
51 12 0.12
52 33 0.32
54 57 0.56
ACGTcount: A:0.26, C:0.27, G:0.12, T:0.35
Consensus pattern (52 bp):
CACTTATCACTTGTTTTCCAATGCCATAGCCCAGCTATGGTCTTATACATAT
Found at i:6889292 original size:14 final size:14
Alignment explanation
Indices: 6889273--6889302 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
6889263 TTATATCAAG
6889273 ACCAATCCAAATCA
1 ACCAATCCAAATCA
*
6889287 ACCAATCCAATTCA
1 ACCAATCCAAATCA
6889301 AC
1 AC
6889303 ATATTTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
ACCAATCCAAATCA
Found at i:6893897 original size:15 final size:13
Alignment explanation
Indices: 6893867--6893913 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
6893857 GACTTATTTA
*
6893867 TTTTTAATTTCAT
1 TTTTTTATTTCAT
6893880 TTTTTTATTTCCACT
1 TTTTTTATTT-CA-T
6893895 TTTTTTATTT-AT
1 TTTTTTATTTCAT
6893907 TTATTTT
1 TT-TTTT
6893914 CTAAATTTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
12 3 0.10
13 14 0.47
14 2 0.07
15 11 0.37
ACGTcount: A:0.17, C:0.09, G:0.00, T:0.74
Consensus pattern (13 bp):
TTTTTTATTTCAT
Found at i:6895714 original size:27 final size:29
Alignment explanation
Indices: 6895683--6895740 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 29
6895673 TCATTTTCTA
*
6895683 ATAGACTTCTA-AAAA-GTCAACATTTGC
1 ATAGACTTCAAGAAAAGGTCAACATTTGC
*
6895710 ATAGACTTCAAGAAAAGGTCCACATTTGC
1 ATAGACTTCAAGAAAAGGTCAACATTTGC
6895739 AT
1 AT
6895741 GCTATGAAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 10 0.37
28 4 0.15
29 13 0.48
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.28
Consensus pattern (29 bp):
ATAGACTTCAAGAAAAGGTCAACATTTGC
Found at i:6897166 original size:12 final size:12
Alignment explanation
Indices: 6897149--6897173 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6897139 TTTTTTTTTT
6897149 AAATTTCATAAA
1 AAATTTCATAAA
6897161 AAATTTCATAAA
1 AAATTTCATAAA
6897173 A
1 A
6897174 CTTTTTTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (12 bp):
AAATTTCATAAA
Found at i:6901945 original size:6 final size:6
Alignment explanation
Indices: 6901934--6901962 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
6901924 AGTATATTAC
6901934 TTTTTA TTTTTA TTTTTA TTTTT- TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
6901963 AGGAATAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.23
6 17 0.77
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTA
Found at i:6902056 original size:16 final size:16
Alignment explanation
Indices: 6902035--6902071 Score: 67
Period size: 15 Copynumber: 2.4 Consensus size: 16
6902025 ATAAATATTA
6902035 ATAATTTTATTTAAAC
1 ATAATTTTATTTAAAC
6902051 ATAA-TTTATTTAAAC
1 ATAATTTTATTTAAAC
6902066 ATAATT
1 ATAATT
6902072 ACGTATTGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 15 0.75
16 5 0.25
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (16 bp):
ATAATTTTATTTAAAC
Found at i:6906083 original size:26 final size:26
Alignment explanation
Indices: 6906027--6906084 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
6906017 TTTCATTATT
6906027 ATTA-TTATATTTTAGGTATTATATC
1 ATTATTTATATTTTAGGTATTATATC
6906052 -TATATTTATA-TTTAGGTATTAATATC
1 AT-TATTTATATTTTAGGTATT-ATATC
6906078 ATTATTT
1 ATTATTT
6906085 TACTATTGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
24 1 0.03
25 12 0.41
26 15 0.52
27 1 0.03
ACGTcount: A:0.33, C:0.03, G:0.07, T:0.57
Consensus pattern (26 bp):
ATTATTTATATTTTAGGTATTATATC
Found at i:6906116 original size:3 final size:3
Alignment explanation
Indices: 6906108--6906224 Score: 64
Period size: 3 Copynumber: 40.3 Consensus size: 3
6906098 TTTTTCATAC
* * * * * * **
6906108 TAT TAT TAT TAT CAC TAT TAT TAC TAT TAG CAT TAT TTT TAT TGC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
6906156 TAT T-T AAT ATAT TAT T-T T-T TAT TAC TAT CAT TAC TAT TAT TA-
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
6906198 TAT TGT TAT TAT TAC TAT TA- TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
6906225 GTATTATCCT
Statistics
Matches: 81, Mismatches: 28, Indels: 10
0.68 0.24 0.08
Matches are distributed among these distances:
2 9 0.11
3 70 0.86
4 2 0.02
ACGTcount: A:0.31, C:0.08, G:0.03, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:6906209 original size:14 final size:13
Alignment explanation
Indices: 6906153--6906231 Score: 58
Period size: 14 Copynumber: 6.1 Consensus size: 13
6906143 TTTTTATTGC
*
6906153 TATTATT-TAATA
1 TATTATTATATTA
6906165 TATTATT-T-TT-
1 TATTATTATATTA
*
6906175 TATTACTATCATTA
1 TATTATTAT-ATTA
*
6906189 CTATTATTATATTGT
1 -TATTATTATATT-A
6906204 TATTATTACTATTA
1 TATTATTA-TATTA
*
6906218 TATTATTGTATTA
1 TATTATTATATTA
6906231 T
1 T
6906232 CCTTACCTAT
Statistics
Matches: 54, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
10 6 0.11
11 2 0.04
12 8 0.15
13 8 0.15
14 18 0.33
15 12 0.22
ACGTcount: A:0.32, C:0.05, G:0.03, T:0.61
Consensus pattern (13 bp):
TATTATTATATTA
Found at i:6906211 original size:23 final size:22
Alignment explanation
Indices: 6906185--6906231 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 22
6906175 TATTACTATC
6906185 ATTACTATTAT-TATATTGTTATT
1 ATTACTATTATAT-TATTG-TATT
6906208 ATTACTATTATATTATTGTATT
1 ATTACTATTATATTATTGTATT
6906230 AT
1 AT
6906232 CCTTACCTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 6 0.26
23 16 0.70
24 1 0.04
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.60
Consensus pattern (22 bp):
ATTACTATTATATTATTGTATT
Found at i:6908511 original size:5 final size:5
Alignment explanation
Indices: 6908483--6908523 Score: 50
Period size: 5 Copynumber: 8.4 Consensus size: 5
6908473 TTCCTTTCTT
*
6908483 TTGCA TT-CA TTTCA -TGCA TCTGCA TTGCA TTGCA TTGCA TT
1 TTGCA TTGCA TTGCA TTGCA T-TGCA TTGCA TTGCA TTGCA TT
6908524 ATTTGCATTA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
4 7 0.22
5 20 0.62
6 5 0.16
ACGTcount: A:0.20, C:0.22, G:0.15, T:0.44
Consensus pattern (5 bp):
TTGCA
Found at i:6912065 original size:25 final size:25
Alignment explanation
Indices: 6912031--6912080 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
6912021 CTACAAAGTC
6912031 TAATTTATCAATCCTTGAGATCATA
1 TAATTTATCAATCCTTGAGATCATA
6912056 TAATTTATCAATCCTTGAGATCATA
1 TAATTTATCAATCCTTGAGATCATA
6912081 ACTTCTGCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (25 bp):
TAATTTATCAATCCTTGAGATCATA
Found at i:6917599 original size:14 final size:15
Alignment explanation
Indices: 6917568--6917614 Score: 53
Period size: 14 Copynumber: 3.3 Consensus size: 15
6917558 ATTGGTTAAT
*
6917568 AATAAAAAGATATAA
1 AATAAAAATATATAA
*
6917583 AATAAAAATAT-TTA
1 AATAAAAATATATAA
*
6917597 AATAAAAATTTA-AA
1 AATAAAAATATATAA
6917611 AATA
1 AATA
6917615 TTAAAGTAGA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
14 17 0.63
15 10 0.37
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (15 bp):
AATAAAAATATATAA
Found at i:6922544 original size:18 final size:19
Alignment explanation
Indices: 6922508--6922554 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
6922498 TTTAAATTAA
6922508 AAATATATTCAAACCTTA-T
1 AAATAT-TTCAAACCTTATT
**
6922527 AAATATTTCAAATTTTATT
1 AAATATTTCAAACCTTATT
6922546 AAATCATTT
1 AAAT-ATTT
6922555 TAAAAAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 9 0.38
19 11 0.46
20 4 0.17
ACGTcount: A:0.45, C:0.11, G:0.00, T:0.45
Consensus pattern (19 bp):
AAATATTTCAAACCTTATT
Found at i:6924059 original size:29 final size:29
Alignment explanation
Indices: 6924003--6924075 Score: 76
Period size: 29 Copynumber: 2.4 Consensus size: 29
6923993 AAACTAAATT
*
6924003 TTAATTTTTTTAATTTTTAAAAAATTAAA-
1 TTAATTTTTTTTA-TTTTAAAAAATTAAAG
**
6924032 TTAATTTTTTATTATTTTAAAAGTTTAAAG
1 TTAATTTTTT-TTATTTTAAAAAATTAAAG
6924062 TGTAATTTTATTTT
1 T-TAATTTT-TTTT
6924076 TATTAATTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
29 23 0.62
30 3 0.08
31 9 0.24
32 2 0.05
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (29 bp):
TTAATTTTTTTTATTTTAAAAAATTAAAG
Found at i:6935016 original size:14 final size:14
Alignment explanation
Indices: 6934997--6935025 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
6934987 TACAATATAT
6934997 ATAAGAATTATACG
1 ATAAGAATTATACG
6935011 ATAAGAATTATACG
1 ATAAGAATTATACG
6935025 A
1 A
6935026 ATCTATCTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.14, T:0.28
Consensus pattern (14 bp):
ATAAGAATTATACG
Found at i:6937583 original size:52 final size:53
Alignment explanation
Indices: 6937505--6937658 Score: 192
Period size: 52 Copynumber: 2.9 Consensus size: 53
6937495 GACGGAAAAG
* *
6937505 ATGTGATATATGATTCCGTATAAGACCATAGCCGA-GCTATGGCATCGGTACA
1 ATGTGATATGTGATTCCGTATAAGACCATAGCCTAGGCTATGGCATCGGTACA
* **
6937557 ATGTGAT-TCGTG-TTCCCGTATAAGACCACAG-CTAGGCTATGGCATCGGTATG
1 ATGTGATAT-GTGATT-CCGTATAAGACCATAGCCTAGGCTATGGCATCGGTACA
*
6937609 ATGTGATAATGTGATTCCGTATAAGACCATA-CCTAGGATATGGCATCGGT
1 ATGTGAT-ATGTGATTCCGTATAAGACCATAGCCTAGGCTATGGCATCGGT
6937659 GTGTGATGTG
Statistics
Matches: 88, Mismatches: 7, Indels: 13
0.81 0.06 0.12
Matches are distributed among these distances:
51 5 0.06
52 46 0.52
53 34 0.39
54 3 0.03
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (53 bp):
ATGTGATATGTGATTCCGTATAAGACCATAGCCTAGGCTATGGCATCGGTACA
Found at i:6938198 original size:313 final size:313
Alignment explanation
Indices: 6937647--6938245 Score: 1056
Period size: 313 Copynumber: 1.9 Consensus size: 313
6937637 ATACCTAGGA
*
6937647 TATGGCATCGGTGTGTGATGTGTGACAATGTGAAAGTCCATAATTTACTATGGCAATGTGATAAT
1 TATGGCATCAGTGTGTGATGTGTGACAATGTGAAAGTCCATAATTTACTATGGCAATGTGATAAT
* *
6937712 AAAACACTCAATTCCACTATTTTTCCCTAATTTGACAATGAAAATAAATAAGAAATGCGCTCAAA
66 AAAACACTCAATTCCACTATGTTTCCCTAATTTGACAATGAAAATAAATAAGAAATGCGCCCAAA
*
6937777 AGAATTAAGTTCGTGAATTGCATTATGAAAATTTTTCAAATGAGTTTATTAATGAAGTTGTGAAT
131 AGAATTAAGTTCGTGAATTGCATCATGAAAATTTTTCAAATGAGTTTATTAATGAAGTTGTGAAT
* * *
6937842 TGCAGGATGAAATTGTTTAACTAATATATATATAATTGTGTACAGTGTTCGGTAAGGTTTGTGTT
196 TGCAGGATGAAATTGTTTAACTAATATAAATATAATAGTGTACAGTGTTCGGTAAGATTTGTGTT
*
6937907 ATTATGCCTATGAGTTTACTAAGCTTGTGATACGTATAAGACCACGGAAGGGC
261 ATTATACCTATGAGTTTACTAAGCTTGTGATACGTATAAGACCACGGAAGGGC
* *
6937960 TATGGCTTCAGTGTGTGATGTGTGACAATGTGAAAGTCCATAGTTTACTATGGCAATGTGATAAT
1 TATGGCATCAGTGTGTGATGTGTGACAATGTGAAAGTCCATAATTTACTATGGCAATGTGATAAT
* * * *
6938025 GAAACACTCAATTCCACTACTGTTT-CCTAATTTGACAGTGGAAATAAATAAGAAATGGGCCCAA
66 AAAACACTCAATTCCACTA-TGTTTCCCTAATTTGACAATGAAAATAAATAAGAAATGCGCCCAA
6938089 AAGAATTAAGTTCGTGAATTGCATCATGAAAATTTTTCAAATGAGTTTATTAATGAAGTTGTGAA
130 AAGAATTAAGTTCGTGAATTGCATCATGAAAATTTTTCAAATGAGTTTATTAATGAAGTTGTGAA
6938154 TTGCAGGATGAAATTGTTTAACTAATATAAATATAATAGTGTACAGTGTTCGGTAAGATTTGTGT
195 TTGCAGGATGAAATTGTTTAACTAATATAAATATAATAGTGTACAGTGTTCGGTAAGATTTGTGT
6938219 TATTATACCTATGAGTTTACTAAGCTT
260 TATTATACCTATGAGTTTACTAAGCTT
6938246 TTGTAAGCTT
Statistics
Matches: 271, Mismatches: 14, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
313 267 0.99
314 4 0.01
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.35
Consensus pattern (313 bp):
TATGGCATCAGTGTGTGATGTGTGACAATGTGAAAGTCCATAATTTACTATGGCAATGTGATAAT
AAAACACTCAATTCCACTATGTTTCCCTAATTTGACAATGAAAATAAATAAGAAATGCGCCCAAA
AGAATTAAGTTCGTGAATTGCATCATGAAAATTTTTCAAATGAGTTTATTAATGAAGTTGTGAAT
TGCAGGATGAAATTGTTTAACTAATATAAATATAATAGTGTACAGTGTTCGGTAAGATTTGTGTT
ATTATACCTATGAGTTTACTAAGCTTGTGATACGTATAAGACCACGGAAGGGC
Found at i:6938751 original size:20 final size:20
Alignment explanation
Indices: 6938726--6938783 Score: 89
Period size: 20 Copynumber: 2.9 Consensus size: 20
6938716 TGCACATGGG
*
6938726 CAGGCCACACGGGCATGTTC
1 CAGGCCACACGGGCATGTCC
*
6938746 CAGGCCACACGGGCGTGTCC
1 CAGGCCACACGGGCATGTCC
*
6938766 CAAGCCACACGGGCATGT
1 CAGGCCACACGGGCATGT
6938784 GTCCCTATCT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.21, C:0.36, G:0.31, T:0.12
Consensus pattern (20 bp):
CAGGCCACACGGGCATGTCC
Found at i:6943247 original size:12 final size:12
Alignment explanation
Indices: 6943205--6943246 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
6943195 TATCTAATTC
6943205 AATGTTCAGACA
1 AATGTTCAGACA
* *
6943217 CATGTTCAGGCA
1 AATGTTCAGACA
*
6943229 AATGTTTAGACA
1 AATGTTCAGACA
6943241 AATGTT
1 AATGTT
6943247 TGAATATATG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (12 bp):
AATGTTCAGACA
Found at i:6943792 original size:35 final size:35
Alignment explanation
Indices: 6943744--6943815 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
6943734 TTCTTTAGAG
*
6943744 TGTTAGCACACTCAGGCTAGATATAACCATATCCT
1 TGTTAGCAAACTCAGGCTAGATATAACCATATCCT
6943779 TGTTAGCAAACTCAGGCTAGATATAACCATATCCT
1 TGTTAGCAAACTCAGGCTAGATATAACCATATCCT
6943814 TG
1 TG
6943816 GAATTCATAG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (35 bp):
TGTTAGCAAACTCAGGCTAGATATAACCATATCCT
Found at i:6953363 original size:40 final size:38
Alignment explanation
Indices: 6953300--6953394 Score: 104
Period size: 40 Copynumber: 2.4 Consensus size: 38
6953290 CCATCTCCGT
* *
6953300 CCCACCCAACACACC-ATGTGGGGATAAAAGT-GACCCA
1 CCCACCCTACACACCAATGTGGGGATAAAA-TCAACCCA
*
6953337 CCCAGCCCTACACACCAAGTGTGGGGATTAAATCAACCCA
1 CCCA-CCCTACACACCAA-TGTGGGGATAAAATCAACCCA
*
6953377 TCCAACCCTACACACCAA
1 -CCCACCCTACACACCAA
6953395 AGGGTACCGT
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
37 4 0.08
38 10 0.20
39 2 0.04
40 30 0.61
41 3 0.06
ACGTcount: A:0.35, C:0.38, G:0.15, T:0.13
Consensus pattern (38 bp):
CCCACCCTACACACCAATGTGGGGATAAAATCAACCCA
Found at i:6960674 original size:63 final size:63
Alignment explanation
Indices: 6960604--6960726 Score: 167
Period size: 63 Copynumber: 2.0 Consensus size: 63
6960594 AGATGCAGGG
* *
6960604 GTCACACGAGTAAGACACACAAACGTGTGTCTAGGAC-GTGTAACTAACTAAGTTTATATTAGA
1 GTCACACGAGTAAAACACACAAACATGTGTCTAGG-CTGTGTAACTAACTAAGTTTATATTAGA
** * * *
6960667 GTCACACGAGTAAAACACACGGACATGTGTCTAGGCTGTGTAACTCATTGAGTTTATATT
1 GTCACACGAGTAAAACACACAAACATGTGTCTAGGCTGTGTAACTAACTAAGTTTATATT
6960727 TGAGAGACAT
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
62 1 0.02
63 51 0.98
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (63 bp):
GTCACACGAGTAAAACACACAAACATGTGTCTAGGCTGTGTAACTAACTAAGTTTATATTAGA
Found at i:6963265 original size:19 final size:19
Alignment explanation
Indices: 6963241--6963279 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
6963231 AGGAAAACCT
*
6963241 ATGACCTTCATTATCATGC
1 ATGACCTCCATTATCATGC
6963260 ATGACCTCCATTATCATGC
1 ATGACCTCCATTATCATGC
6963279 A
1 A
6963280 ACTTGCATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.33
Consensus pattern (19 bp):
ATGACCTCCATTATCATGC
Found at i:6963656 original size:16 final size:16
Alignment explanation
Indices: 6963635--6963667 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
6963625 ACATATTTAA
6963635 TAATATAACAAATTAT
1 TAATATAACAAATTAT
*
6963651 TAATATAACTAATTAT
1 TAATATAACAAATTAT
6963667 T
1 T
6963668 TCAATAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (16 bp):
TAATATAACAAATTAT
Found at i:6963764 original size:27 final size:25
Alignment explanation
Indices: 6963734--6963788 Score: 65
Period size: 27 Copynumber: 2.1 Consensus size: 25
6963724 AATATTCTTC
*
6963734 ATATATTAGTGAAAAATATTTATATTA
1 ATATATTAATGAAAAATA--TATATTA
* *
6963761 ATATTTTAATGATAAATATATATTA
1 ATATATTAATGAAAAATATATATTA
6963786 ATA
1 ATA
6963789 ATATAAATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 10 0.40
27 15 0.60
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.45
Consensus pattern (25 bp):
ATATATTAATGAAAAATATATATTA
Found at i:6963786 original size:17 final size:16
Alignment explanation
Indices: 6963760--6963809 Score: 64
Period size: 17 Copynumber: 3.0 Consensus size: 16
6963750 TATTTATATT
* *
6963760 AATATTTTAATGATAA
1 AATATATTAATAATAA
6963776 ATATATATTAATAATATA
1 A-ATATATTAATAATA-A
6963794 AATATATTAATAATAA
1 AATATATTAATAATAA
6963810 TTTTTTTAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
16 2 0.07
17 26 0.87
18 2 0.07
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (16 bp):
AATATATTAATAATAA
Found at i:6963807 original size:20 final size:20
Alignment explanation
Indices: 6963767--6963810 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
6963757 ATTAATATTT
*
6963767 TAATGATAAATATATATTAA
1 TAATGATAAATATATAATAA
6963787 TAAT-ATAAATATATTAATAA
1 TAATGATAAATATA-TAATAA
6963807 TAAT
1 TAAT
6963811 TTTTTTAGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (20 bp):
TAATGATAAATATATAATAA
Found at i:6970531 original size:88 final size:88
Alignment explanation
Indices: 6970417--6970603 Score: 248
Period size: 88 Copynumber: 2.1 Consensus size: 88
6970407 TGCGGTAATT
* * ** * * *
6970417 CGCTGTACAGATACTTTACAGTTTAAACTGCCAGGTCAGATAATGGTACGCAGCATAGCTGATGT
1 CGCTGTACAAACACTTTGTAGTTTAAACTGCCAGATCAGATAATGGTACGCAGCATAGCTAACGT
*
6970482 ACATACGATATAGTGCAGTAAAC
66 ACATACGATACAGTGCAGTAAAC
* *
6970505 CGTTGTACAAACACTTTGTAGTTTAAACTGCCAGATCAGATAATGGTATGCAGCATAGCTAACGT
1 CGCTGTACAAACACTTTGTAGTTTAAACTGCCAGATCAGATAATGGTACGCAGCATAGCTAACGT
* * *
6970570 ACGTACGGTACAGTGCGGTAAAC
66 ACATACGATACAGTGCAGTAAAC
*
6970593 TGCTGTACAAA
1 CGCTGTACAAA
6970604 TAGGTTGCAG
Statistics
Matches: 84, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
88 84 1.00
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (88 bp):
CGCTGTACAAACACTTTGTAGTTTAAACTGCCAGATCAGATAATGGTACGCAGCATAGCTAACGT
ACATACGATACAGTGCAGTAAAC
Found at i:6972367 original size:19 final size:20
Alignment explanation
Indices: 6972301--6972369 Score: 54
Period size: 19 Copynumber: 3.5 Consensus size: 20
6972291 ATATAATTCT
** * *
6972301 ATTTATTAAATTTCATTTTC
1 ATTTATTAAAAATAATTTTA
*
6972321 ATTTAAT-AAAAT-ATTATTA
1 ATTTATTAAAAATAATT-TTA
6972340 ATATTATTAAAAATAATTTT-
1 AT-TTATTAAAAATAATTTTA
6972360 ATTTATTAAA
1 ATTTATTAAA
6972370 TTTTATTTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
18 3 0.08
19 15 0.38
20 12 0.30
21 7 0.17
22 3 0.08
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (20 bp):
ATTTATTAAAAATAATTTTA
Found at i:6972381 original size:20 final size:20
Alignment explanation
Indices: 6972300--6972389 Score: 69
Period size: 20 Copynumber: 4.5 Consensus size: 20
6972290 AATATAATTC
6972300 TATTTATTAAAT-TTCATTTT
1 TATTTATTAAATATT-ATTTT
* * **
6972320 CATTTAATAAAATATTATTAA
1 TATTT-ATTAAATATTATTTT
* *
6972341 TA-TTATTAAA-AATAATTT
1 TATTTATTAAATATTATTTT
*
6972359 TATTTATTAAATTTTATTTT
1 TATTTATTAAATATTATTTT
*
6972379 TATTTAATAAA
1 TATTTATTAAA
6972390 ATGTTGTTAA
Statistics
Matches: 52, Mismatches: 14, Indels: 8
0.70 0.19 0.11
Matches are distributed among these distances:
18 6 0.12
19 13 0.25
20 21 0.40
21 10 0.19
22 2 0.04
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (20 bp):
TATTTATTAAATATTATTTT
Found at i:6973481 original size:20 final size:21
Alignment explanation
Indices: 6973452--6973490 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
6973442 TGTTCCCTTT
*
6973452 TTTTTGTTC-TTTCTCTTTTC
1 TTTTTCTTCTTTTCTCTTTTC
6973472 TTTTTCTTCTTTTCTCTTT
1 TTTTTCTTCTTTTCTCTTT
6973491 CGTCATATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.00, C:0.21, G:0.03, T:0.77
Consensus pattern (21 bp):
TTTTTCTTCTTTTCTCTTTTC
Found at i:6973491 original size:20 final size:19
Alignment explanation
Indices: 6973448--6973491 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
6973438 CTTTTGTTCC
*
6973448 CTTT-TTTTTGTTCTTTCT
1 CTTTCTTTTTCTTCTTTCT
6973466 CTTTTCTTTTTCTTCTTTTCT
1 C-TTTCTTTTTCTTC-TTTCT
6973487 CTTTC
1 CTTTC
6973492 GTCATATAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 1 0.05
19 3 0.14
20 12 0.55
21 6 0.27
ACGTcount: A:0.00, C:0.23, G:0.02, T:0.75
Consensus pattern (19 bp):
CTTTCTTTTTCTTCTTTCT
Found at i:6975538 original size:46 final size:46
Alignment explanation
Indices: 6975445--6975611 Score: 191
Period size: 46 Copynumber: 3.6 Consensus size: 46
6975435 AGAGCCAGTA
* **
6975445 TAAGACCATGTCTGGGACATGGCATCGGCATTAAGACG-AGTGCTAGTG
1 TAAGA-CATGTCTGGGACATGGCATCGGCCTCGAGACGTAGT--TAGTG
*
6975493 TAAGACATGTCTAGGACAT-GCATCGGCCTCGAGACGTAAGTTAGTG
1 TAAGACATGTCTGGGACATGGCATCGGCCTCGAGACGT-AGTTAGTG
* *
6975539 TAAAACATGTCTGGGACAT-GCATCGG-CTACGAGATGT-GTTAGTG
1 TAAGACATGTCTGGGACATGGCATCGGCCT-CGAGACGTAGTTAGTG
6975583 TAAGACTATGTCTGGGACATGGCATCGGC
1 TAAGAC-ATGTCTGGGACATGGCATCGGC
6975612 ACAGATATAA
Statistics
Matches: 105, Mismatches: 8, Indels: 13
0.83 0.06 0.10
Matches are distributed among these distances:
44 12 0.11
45 15 0.14
46 57 0.54
47 13 0.12
48 8 0.08
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.25
Consensus pattern (46 bp):
TAAGACATGTCTGGGACATGGCATCGGCCTCGAGACGTAGTTAGTG
Found at i:6981563 original size:56 final size:56
Alignment explanation
Indices: 6981477--6981596 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
6981467 ACAAGGGATG
6981477 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
6981533 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
6981589 ATGGGCAA
1 ATGGGCAA
6981597 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:6982809 original size:40 final size:40
Alignment explanation
Indices: 6982725--6982949 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
6982715 TTGAATGATG
* * * * *
6982725 TCCGGGCTAAGTCCCGAAGG-TTTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
6982765 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACCAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
6982805 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
6982844 TACGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
6982884 TCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
6982925 T-CGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
6982950 AACGAGTAGC
Statistics
Matches: 160, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
39 32 0.20
40 117 0.73
41 11 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:6982956 original size:80 final size:78
Alignment explanation
Indices: 6982778--6982972 Score: 241
Period size: 80 Copynumber: 2.5 Consensus size: 78
6982768 GGACTAAGAT
* * * *
6982778 CCGAAGGCATTTGTGCGAGATACCAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAG-TACTAAATCCGGGTTAAGCCCAAAGGCATTGGTGCGAGTTACTAA
*
6982843 ATACGGGTTAAGTC
65 ATACGGGCTAAGTC
*
6982857 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAG-TACTAAATCCGGGTTAAG-CCCAAAGGCATTGGTGCGAGTTACTA
*
6982922 TAAT-CGGGCTATGTC
64 -AATACGGGCTAAGTC
** *
6982937 CCGAAGGCATTTGAACGAGTAGCTATATCC-GGTTAA
1 CCGAAGGCATTTGTGCGAGTA-CTAAATCCGGGTTAA
6982973 ATTCCGAAGG
Statistics
Matches: 102, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
79 42 0.41
80 57 0.56
81 3 0.03
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGTACTAAATCCGGGTTAAGCCCAAAGGCATTGGTGCGAGTTACTAAA
TACGGGCTAAGTC
Found at i:6990939 original size:3 final size:3
Alignment explanation
Indices: 6990933--6990964 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
6990923 TCATCATCAT
*
6990933 CAG CAG CAG CAG CAG CAG CAG CAG CAA CAG CA
1 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CA
6990965 ACATCAGAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.38, C:0.34, G:0.28, T:0.00
Consensus pattern (3 bp):
CAG
Found at i:6996097 original size:29 final size:29
Alignment explanation
Indices: 6996040--6996099 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
6996030 AAAAAATATT
*
6996040 AAATTAATATAAACCTATAAAATTAATAA
1 AAATTAATAAAAACCTATAAAATTAATAA
*
6996069 AAATTAATAAAAACTTATAAATATT-ATAA
1 AAATTAATAAAAACCTATAAA-ATTAATAA
6996098 AA
1 AA
6996100 GATATTTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 25 0.89
30 3 0.11
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (29 bp):
AAATTAATAAAAACCTATAAAATTAATAA
Found at i:6997176 original size:31 final size:30
Alignment explanation
Indices: 6997138--6997214 Score: 84
Period size: 29 Copynumber: 2.5 Consensus size: 30
6997128 AATCTCAAAA
*
6997138 TTATACATAAATTTTGGCCTAATGAGTAATT
1 TTATACATAAATTTTGG-ATAATGAGTAATT
* ** *
6997169 TTATACATTAATTTT-GATTTTGTGTAATT
1 TTATACATAAATTTTGGATAATGAGTAATT
6997198 TTATACATGAAATTTTG
1 TTATACAT-AAATTTTG
6997215 ATTTGATCAA
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
29 17 0.45
30 7 0.18
31 14 0.37
ACGTcount: A:0.32, C:0.06, G:0.12, T:0.49
Consensus pattern (30 bp):
TTATACATAAATTTTGGATAATGAGTAATT
Found at i:6997927 original size:13 final size:15
Alignment explanation
Indices: 6997894--6997935 Score: 54
Period size: 13 Copynumber: 3.0 Consensus size: 15
6997884 TTAAAATTTT
6997894 TATTT-TATTTTTAA
1 TATTTATATTTTTAA
6997908 TATTTATATTTTTAA
1 TATTTATATTTTTAA
*
6997923 -A-TTATAATTTTAA
1 TATTTATATTTTTAA
6997936 GAAGTTAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 11 0.42
14 6 0.23
15 9 0.35
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
TATTTATATTTTTAA
Found at i:6997927 original size:26 final size:28
Alignment explanation
Indices: 6997859--6997927 Score: 70
Period size: 26 Copynumber: 2.5 Consensus size: 28
6997849 TTTTTTAAAT
*
6997859 TATTTTTAAATAATTTAATTAAATATTAA
1 TATTTTTAAATTATTT-ATTAAATATTAA
* ** *
6997888 AATTTTTATTTTATTT-TT-AATATTTA
1 TATTTTTAAATTATTTATTAAATATTAA
6997914 TATTTTTAAATTAT
1 TATTTTTAAATTAT
6997928 AATTTTAAGA
Statistics
Matches: 32, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
26 18 0.56
27 2 0.06
29 12 0.38
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (28 bp):
TATTTTTAAATTATTTATTAAATATTAA
Found at i:6998056 original size:19 final size:19
Alignment explanation
Indices: 6998032--6998081 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
6998022 AAAAAACTTT
6998032 TTTAATTTTAAATTCAAAA
1 TTTAATTTTAAATTCAAAA
6998051 TTTAATTTTAAATTCAAAA
1 TTTAATTTTAAATTCAAAA
* *
6998070 TATATTTTTAAA
1 TTTAATTTTAAA
6998082 ATTAAGATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (19 bp):
TTTAATTTTAAATTCAAAA
Found at i:6999606 original size:6 final size:6
Alignment explanation
Indices: 6999595--6999628 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
6999585 GCATAAATAG
6999595 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA
6999629 GACAGGAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:7004658 original size:2 final size:2
Alignment explanation
Indices: 7004651--7004691 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
7004641 ATAGAATAAA
7004651 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
7004692 ATGAAATATA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7006541 original size:43 final size:44
Alignment explanation
Indices: 7006448--7006560 Score: 115
Period size: 43 Copynumber: 2.6 Consensus size: 44
7006438 GAAATCCTAT
* * * *
7006448 AGATGGAATCT-GCTTTCGACTGTGGATACACAACAAGTACCTGC
1 AGATGGAATCTACCTTT-GGCTATGGATACACAACAAGTACCCGC
*
7006492 ATATGGAATCTACCTTTGGCTATGGAT-CACAACAA-TACCCCGC
1 AGATGGAATCTACCTTTGGCTATGGATACACAACAAGTA-CCCGC
* * *
7006535 AGATGGAATTTACCTCTAGCTATGGA
1 AGATGGAATCTACCTTTGGCTATGGA
7006561 ATAAAATTTA
Statistics
Matches: 58, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
42 2 0.03
43 34 0.59
44 18 0.31
45 4 0.07
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (44 bp):
AGATGGAATCTACCTTTGGCTATGGATACACAACAAGTACCCGC
Found at i:7007333 original size:31 final size:31
Alignment explanation
Indices: 7007298--7007359 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
7007288 TTAAATAAAG
7007298 TATGGGTCAAGTATGTATAAATATTCTAGTA
1 TATGGGTCAAGTATGTATAAATATTCTAGTA
7007329 TATGGGTCAAGTATGTATAAATATTCTAGTA
1 TATGGGTCAAGTATGTATAAATATTCTAGTA
7007360 ACTAATTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.35, C:0.06, G:0.19, T:0.39
Consensus pattern (31 bp):
TATGGGTCAAGTATGTATAAATATTCTAGTA
Found at i:7017889 original size:40 final size:40
Alignment explanation
Indices: 7017841--7018024 Score: 181
Period size: 40 Copynumber: 4.3 Consensus size: 40
7017831 GGCGTTTCAA
*
7017841 TGAAAAACGCCGCTAAAGATCGAGCATTAGCGGCGCTTTT
1 TGAAAAACGCCGCTAAAGATCAAGCATTAGCGGCGCTTTT
7017881 TGAAAAACGCCGCTAAAGATCAAGCATTAGCGGCGCTTTT
1 TGAAAAACGCCGCTAAAGATCAAGCATTAGCGGCGCTTTT
* * * *
7017921 TAAAAAACGCCGCAAAAAATTACGCTAACTGCCGCGGCTTTAGCGGCGCTTTT
1 TGAAAAACGCCGCTAAAGA-T---C-AA-----GC--ATT-AGCGGCGCTTTT
7017974 TGAAAAACGCCGCTAAAGAT-AAGCATTAGCGGCGCTTTT
1 TGAAAAACGCCGCTAAAGATCAAGCATTAGCGGCGCTTTT
*
7018013 TAAAAAAACGCC
1 T-GAAAAACGCC
7018025 ACAAAAAGTA
Statistics
Matches: 120, Mismatches: 10, Indels: 28
0.76 0.06 0.18
Matches are distributed among these distances:
39 13 0.11
40 66 0.55
41 1 0.01
42 2 0.02
44 1 0.01
45 2 0.02
47 2 0.02
50 2 0.02
52 3 0.03
53 28 0.23
ACGTcount: A:0.33, C:0.23, G:0.22, T:0.22
Consensus pattern (40 bp):
TGAAAAACGCCGCTAAAGATCAAGCATTAGCGGCGCTTTT
Found at i:7018486 original size:14 final size:14
Alignment explanation
Indices: 7018445--7018492 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
7018435 CAATTTTAAA
7018445 GTTTATGGATTATAG
1 GTTTATGGATTAT-G
*
7018460 GTTTAGGGATTATG
1 GTTTATGGATTATG
* *
7018474 ATTTATGGTTTATG
1 GTTTATGGATTATG
7018488 GTTTA
1 GTTTA
7018493 AGGGTTGGGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
14 16 0.57
15 12 0.43
ACGTcount: A:0.23, C:0.00, G:0.27, T:0.50
Consensus pattern (14 bp):
GTTTATGGATTATG
Found at i:7018489 original size:7 final size:7
Alignment explanation
Indices: 7018445--7018492 Score: 51
Period size: 7 Copynumber: 6.7 Consensus size: 7
7018435 CAATTTTAAA
7018445 GTTTATG
1 GTTTATG
*
7018452 GATTATAG
1 GTTTAT-G
*
7018460 GTTTAGG
1 GTTTATG
*
7018467 GATTATG
1 GTTTATG
*
7018474 ATTTATG
1 GTTTATG
7018481 GTTTATG
1 GTTTATG
7018488 GTTTA
1 GTTTA
7018493 AGGGTTGGGG
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
7 27 0.84
8 5 0.16
ACGTcount: A:0.23, C:0.00, G:0.27, T:0.50
Consensus pattern (7 bp):
GTTTATG
Found at i:7018504 original size:14 final size:15
Alignment explanation
Indices: 7018487--7018539 Score: 54
Period size: 15 Copynumber: 3.6 Consensus size: 15
7018477 TATGGTTTAT
7018487 GGTTTAAGGGTT-GG
1 GGTTTAAGGGTTAGG
* **
7018501 GGTTTGAGCTTTAGG
1 GGTTTAAGGGTTAGG
*
7018516 GGTTTAAGGGTCAGG
1 GGTTTAAGGGTTAGG
*
7018531 GGTTCAAGG
1 GGTTTAAGG
7018540 TTAACGGTTT
Statistics
Matches: 30, Mismatches: 8, Indels: 1
0.77 0.21 0.03
Matches are distributed among these distances:
14 9 0.30
15 21 0.70
ACGTcount: A:0.17, C:0.06, G:0.45, T:0.32
Consensus pattern (15 bp):
GGTTTAAGGGTTAGG
Found at i:7018702 original size:14 final size:14
Alignment explanation
Indices: 7018680--7018724 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
7018670 TTAATTATCA
*
7018680 TTATAGTTTAGGGT
1 TTATGGTTTAGGGT
7018694 TTATGGTTTAGGGT
1 TTATGGTTTAGGGT
* *
7018708 ATATGGTTAAGGGT
1 TTATGGTTTAGGGT
7018722 TTA
1 TTA
7018725 ATGTTTATGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.22, C:0.00, G:0.31, T:0.47
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:7019028 original size:59 final size:59
Alignment explanation
Indices: 7018964--7019083 Score: 240
Period size: 59 Copynumber: 2.0 Consensus size: 59
7018954 AATTTAGGTG
7018964 TATACATATAATTAAATGTCATTTATATAAAAATCTAAACAACTAATGTGGACCATACT
1 TATACATATAATTAAATGTCATTTATATAAAAATCTAAACAACTAATGTGGACCATACT
7019023 TATACATATAATTAAATGTCATTTATATAAAAATCTAAACAACTAATGTGGACCATACT
1 TATACATATAATTAAATGTCATTTATATAAAAATCTAAACAACTAATGTGGACCATACT
7019082 TA
1 TA
7019084 AAAGAATAAT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 61 1.00
ACGTcount: A:0.46, C:0.13, G:0.07, T:0.34
Consensus pattern (59 bp):
TATACATATAATTAAATGTCATTTATATAAAAATCTAAACAACTAATGTGGACCATACT
Found at i:7019220 original size:7 final size:7
Alignment explanation
Indices: 7019208--7019286 Score: 68
Period size: 7 Copynumber: 11.0 Consensus size: 7
7019198 AATATTCAAA
7019208 AAAATTT
1 AAAATTT
7019215 AAAATTT
1 AAAATTT
7019222 AAAATTT
1 AAAATTT
*
7019229 AAAATTA
1 AAAATTT
*
7019236 AAAATTA
1 AAAATTT
*
7019243 AAAATTA
1 AAAATTT
* *
7019250 AAAAATA
1 AAAATTT
*
7019257 AAGAACTT
1 AA-AATTT
7019265 AAAATTTT
1 AAAA-TTT
*
7019273 AATATTT
1 AAAATTT
*
7019280 AATATTT
1 AAAATTT
7019287 TATTCCATAT
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
7 54 0.84
8 10 0.16
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.38
Consensus pattern (7 bp):
AAAATTT
Found at i:7023083 original size:10 final size:10
Alignment explanation
Indices: 7023070--7023094 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
7023060 TTTTCAGGAC
7023070 TTTTACAATA
1 TTTTACAATA
7023080 TTTTACAATA
1 TTTTACAATA
7023090 TTTTA
1 TTTTA
7023095 TTTTTTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (10 bp):
TTTTACAATA
Found at i:7023856 original size:15 final size:16
Alignment explanation
Indices: 7023821--7023856 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
7023811 CAACACAACT
7023821 TCAAAAGTTCAGAAGA
1 TCAAAAGTTCAGAAGA
*
7023837 TCAAAAGTTTAGAA-A
1 TCAAAAGTTCAGAAGA
7023852 TCAAA
1 TCAAA
7023857 GCTTGAAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.53, C:0.11, G:0.14, T:0.22
Consensus pattern (16 bp):
TCAAAAGTTCAGAAGA
Found at i:7024241 original size:53 final size:53
Alignment explanation
Indices: 7024183--7024288 Score: 212
Period size: 53 Copynumber: 2.0 Consensus size: 53
7024173 TGCATGATAC
7024183 CACATTGATTACCAAATTGACTTAAAAGAAAATCAAAATGATCAAAGTTTCTT
1 CACATTGATTACCAAATTGACTTAAAAGAAAATCAAAATGATCAAAGTTTCTT
7024236 CACATTGATTACCAAATTGACTTAAAAGAAAATCAAAATGATCAAAGTTTCTT
1 CACATTGATTACCAAATTGACTTAAAAGAAAATCAAAATGATCAAAGTTTCTT
7024289 TCATACAATA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.45, C:0.15, G:0.09, T:0.30
Consensus pattern (53 bp):
CACATTGATTACCAAATTGACTTAAAAGAAAATCAAAATGATCAAAGTTTCTT
Found at i:7025204 original size:28 final size:27
Alignment explanation
Indices: 7025160--7025212 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 27
7025150 TAAATTTTAG
*
7025160 AAAAATTATTAAATTTTAATAAAAATAT
1 AAAAATTATGAAATTTT-ATAAAAATAT
7025188 AAAAATTA-GAAATTTTTATAAAAAT
1 AAAAATTATGAAA-TTTTATAAAAAT
7025213 CGTAAAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 11 0.48
28 12 0.52
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (27 bp):
AAAAATTATGAAATTTTATAAAAATAT
Found at i:7025220 original size:28 final size:28
Alignment explanation
Indices: 7025160--7025212 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 28
7025150 TAAATTTTAG
*
7025160 AAAAATTATTAAATTTTAATAAAAATAT
1 AAAAATTATGAAATTTTAATAAAAATAT
*
7025188 AAAAATTA-GAAATTTTTATAAAAAT
1 AAAAATTATGAAATTTTAATAAAAAT
7025213 CGTAAAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 15 0.65
28 8 0.35
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (28 bp):
AAAAATTATGAAATTTTAATAAAAATAT
Found at i:7025260 original size:37 final size:36
Alignment explanation
Indices: 7025178--7025258 Score: 110
Period size: 36 Copynumber: 2.2 Consensus size: 36
7025168 TTAAATTTTA
* *
7025178 ATAAAAATATAAAAATTAGAAATTTTTATAAAAATC
1 ATAAAAAAATAAAAATTAGAAAATTTTATAAAAATC
* *
7025214 GTAAAAAAATAAAAATT-GTAAAATTTTATTAAAATC
1 ATAAAAAAATAAAAATTAG-AAAATTTTATAAAAATC
7025250 ATAAAAAAA
1 ATAAAAAAA
7025259 ATTACCAACC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
35 1 0.03
36 38 0.97
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (36 bp):
ATAAAAAAATAAAAATTAGAAAATTTTATAAAAATC
Found at i:7025527 original size:55 final size:56
Alignment explanation
Indices: 7025429--7025543 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
7025419 TTTATATTTC
* **
7025429 TTTACATTTTGAATAATTTTCTTACGACTTTATAAAATTTTATAATTATTTTA-TAT
1 TTTACATTTTGAATAATTTTCTTACGACTTTAAAAAAAATTATAATT-TTTTACTAT
* *
7025485 TTTATATTTT-AATAATTTT-TTACGATTTTTAAAAAAAATTATAATTTTTTACTAT
1 TTTACATTTTGAATAATTTTCTTACGA-CTTTAAAAAAAATTATAATTTTTTACTAT
7025540 TTTA
1 TTTA
7025544 AAAAAATTAT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 11 0.21
55 32 0.62
56 9 0.17
ACGTcount: A:0.36, C:0.05, G:0.03, T:0.57
Consensus pattern (56 bp):
TTTACATTTTGAATAATTTTCTTACGACTTTAAAAAAAATTATAATTTTTTACTAT
Found at i:7025529 original size:29 final size:27
Alignment explanation
Indices: 7025496--7025559 Score: 101
Period size: 27 Copynumber: 2.3 Consensus size: 27
7025486 TTATATTTTA
7025496 ATAATTTTTTACGATTTTTAAAAAAAATT
1 ATAATTTTTTACGA-TTTT-AAAAAAATT
*
7025525 ATAATTTTTTACTATTTTAAAAAAATT
1 ATAATTTTTTACGATTTTAAAAAAATT
7025552 ATAATTTT
1 ATAATTTT
7025560 ATATTTTTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 17 0.50
28 4 0.12
29 13 0.38
ACGTcount: A:0.44, C:0.03, G:0.02, T:0.52
Consensus pattern (27 bp):
ATAATTTTTTACGATTTTAAAAAAATT
Found at i:7025667 original size:9 final size:9
Alignment explanation
Indices: 7025550--7025669 Score: 52
Period size: 9 Copynumber: 13.3 Consensus size: 9
7025540 TTTAAAAAAA
7025550 TTATAA-TT
1 TTATAATTT
*
7025558 TTATATTTT
1 TTATAATTT
*
7025567 TTACAATTT
1 TTATAATTT
*
7025576 TTACAATTT
1 TTATAATTT
* *
7025585 TTCTTATTT
1 TTATAATTT
*
7025594 TT-TAATAT
1 TTATAATTT
7025602 TTA-AATTTTT
1 TTATAA--TTT
*
7025612 TTATTAAAATT
1 TTA-T-AATTT
* *
7025623 TAATAATAT
1 TTATAATTT
*
7025632 TTATAACTT
1 TTATAATTT
*
7025641 TTATTGA-TT
1 TTA-TAATTT
*
7025650 TTAT-TTTT
1 TTATAATTT
7025658 TTATAATTT
1 TTATAATTT
7025667 TTA
1 TTA
7025670 ATAAAAGAAG
Statistics
Matches: 83, Mismatches: 19, Indels: 19
0.69 0.16 0.16
Matches are distributed among these distances:
8 20 0.24
9 49 0.59
10 8 0.10
11 4 0.05
13 2 0.02
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (9 bp):
TTATAATTT
Found at i:7027783 original size:22 final size:22
Alignment explanation
Indices: 7027755--7027798 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
7027745 AGATTGCCAA
7027755 GTTATACGTTTTACAAGGTTCT
1 GTTATACGTTTTACAAGGTTCT
* *
7027777 GTTATACGTTTTGCAGGGTTCT
1 GTTATACGTTTTACAAGGTTCT
7027799 ACTGTTACTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.18, C:0.14, G:0.23, T:0.45
Consensus pattern (22 bp):
GTTATACGTTTTACAAGGTTCT
Found at i:7030088 original size:27 final size:27
Alignment explanation
Indices: 7030040--7030198 Score: 184
Period size: 27 Copynumber: 5.9 Consensus size: 27
7030030 GCGAGGCTGC
* *
7030040 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
7030067 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
7030093 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
7030120 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
7030147 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
7030174 TAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
7030199 GACGCTTCCT
Statistics
Matches: 116, Mismatches: 8, Indels: 16
0.83 0.06 0.11
Matches are distributed among these distances:
26 10 0.09
27 101 0.87
28 5 0.04
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:7030199 original size:54 final size:54
Alignment explanation
Indices: 7030058--7030201 Score: 245
Period size: 54 Copynumber: 2.7 Consensus size: 54
7030048 GTGACGAAGT
* *
7030058 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
7030112 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
*
7030166 CACCAGATTAGATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
7030202 GCTTCCTCCA
Statistics
Matches: 86, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
53 5 0.06
54 81 0.94
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:7034842 original size:16 final size:16
Alignment explanation
Indices: 7034821--7034851 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7034811 CATTTTATTT
*
7034821 ATATTAGGATAATTAA
1 ATATTAAGATAATTAA
7034837 ATATTAAGATAATTA
1 ATATTAAGATAATTA
7034852 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.39
Consensus pattern (16 bp):
ATATTAAGATAATTAA
Found at i:7034880 original size:28 final size:27
Alignment explanation
Indices: 7034817--7034881 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 27
7034807 ACTCCATTTT
7034817 ATTTATATTAGGATAATTAAATATTAAG
1 ATTT-TATTAGGATAATTAAATATTAAG
* * * *
7034845 ATAATTATTAGGATTATTTAAATTTTAGG
1 AT-TTTATTAGGA-TAATTAAATATTAAG
7034874 ATTTTATT
1 ATTTTATT
7034882 TTAATTATCT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
28 15 0.50
29 15 0.50
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (27 bp):
ATTTTATTAGGATAATTAAATATTAAG
Found at i:7035826 original size:12 final size:12
Alignment explanation
Indices: 7035809--7035841 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
7035799 CTACTTACCA
7035809 TTTACTATTATC
1 TTTACTATTATC
*
7035821 TTTACTATTATT
1 TTTACTATTATC
7035833 TTTACTATT
1 TTTACTATT
7035842 TTACAGGGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (12 bp):
TTTACTATTATC
Found at i:7037947 original size:11 final size:12
Alignment explanation
Indices: 7037931--7037959 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
7037921 TTACTTTTGG
7037931 TATTTTTCTT-A
1 TATTTTTCTTAA
7037942 TATTTTTCTTAA
1 TATTTTTCTTAA
7037954 TATTTT
1 TATTTT
7037960 AAATATTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 10 0.59
12 7 0.41
ACGTcount: A:0.21, C:0.07, G:0.00, T:0.72
Consensus pattern (12 bp):
TATTTTTCTTAA
Found at i:7046431 original size:3 final size:3
Alignment explanation
Indices: 7046423--7046448 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
7046413 TTAAATTACT
7046423 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
7046449 GTAAATACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:7054238 original size:24 final size:24
Alignment explanation
Indices: 7054211--7054284 Score: 148
Period size: 24 Copynumber: 3.1 Consensus size: 24
7054201 ATAAACTTTT
7054211 TTTCAAAGATAAAAGGATTTTAAC
1 TTTCAAAGATAAAAGGATTTTAAC
7054235 TTTCAAAGATAAAAGGATTTTAAC
1 TTTCAAAGATAAAAGGATTTTAAC
7054259 TTTCAAAGATAAAAGGATTTTAAC
1 TTTCAAAGATAAAAGGATTTTAAC
7054283 TT
1 TT
7054285 ACTTCCTTGC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 50 1.00
ACGTcount: A:0.45, C:0.08, G:0.12, T:0.35
Consensus pattern (24 bp):
TTTCAAAGATAAAAGGATTTTAAC
Found at i:7059468 original size:19 final size:19
Alignment explanation
Indices: 7059444--7059482 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
7059434 GAGGGCATGT
7059444 TTGGTTAGAGTGAATGGAA
1 TTGGTTAGAGTGAATGGAA
7059463 TTGGTTAGAGTGAATGGAA
1 TTGGTTAGAGTGAATGGAA
7059482 T
1 T
7059483 AGAGATGCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.36, T:0.33
Consensus pattern (19 bp):
TTGGTTAGAGTGAATGGAA
Found at i:7059799 original size:38 final size:37
Alignment explanation
Indices: 7059728--7059799 Score: 99
Period size: 38 Copynumber: 1.9 Consensus size: 37
7059718 AATAACAAAT
* *
7059728 AATTTAATCATATTTTAACATAATTATTATTAAATAC
1 AATTTAATAACATTTTAACATAATTATTATTAAATAC
* *
7059765 AATTTAATAACATTCTTAATATAATTATTTTTAAA
1 AATTTAATAACATT-TTAACATAATTATTATTAAA
7059800 ATATGAATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
37 12 0.40
38 18 0.60
ACGTcount: A:0.46, C:0.07, G:0.00, T:0.47
Consensus pattern (37 bp):
AATTTAATAACATTTTAACATAATTATTATTAAATAC
Found at i:7059824 original size:39 final size:38
Alignment explanation
Indices: 7059747--7059826 Score: 90
Period size: 39 Copynumber: 2.1 Consensus size: 38
7059737 ATATTTTAAC
* * *
7059747 ATAATTATTATTAAATACAATTTAATAACATTCTTAAT
1 ATAATTATTATTAAATACAATTTAATAAAAATCATAAT
* *
7059785 ATAATTATTTTTAAAATATGAA-TTAATAAAAATCATAAT
1 ATAATTATTATT-AAATA-CAATTTAATAAAAATCATAAT
7059824 ATA
1 ATA
7059827 TAATATTAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
38 11 0.31
39 22 0.63
40 2 0.06
ACGTcount: A:0.51, C:0.05, G:0.01, T:0.42
Consensus pattern (38 bp):
ATAATTATTATTAAATACAATTTAATAAAAATCATAAT
Found at i:7065081 original size:18 final size:18
Alignment explanation
Indices: 7065058--7065127 Score: 131
Period size: 18 Copynumber: 3.9 Consensus size: 18
7065048 CCCAACTACT
7065058 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
7065076 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
*
7065094 GTATATGTGAATAGTACC
1 GTATACGTGAATAGTACC
7065112 GTATACGTGAATAGTA
1 GTATACGTGAATAGTA
7065128 TTGTAAACGG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 50 1.00
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.30
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:7067432 original size:11 final size:12
Alignment explanation
Indices: 7067409--7067437 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
7067399 TTTTTAATTC
7067409 TATGAGAATTTT
1 TATGAGAATTTT
7067421 TATGAGAATTTT
1 TATGAGAATTTT
7067433 TATGA
1 TATGA
7067438 AAGTATTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.48
Consensus pattern (12 bp):
TATGAGAATTTT
Found at i:7070199 original size:23 final size:21
Alignment explanation
Indices: 7070150--7070199 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
7070140 ACGTCGAAGA
*
7070150 AATTATTTTATTTTTCAATAT
1 AATTATTTTATTTTTCAAAAT
*
7070171 AA--ATTTATTTTTTTCTAAAAT
1 AATTATTT-TATTTTTC-AAAAT
7070192 AATTATTT
1 AATTATTT
7070200 GTTTGGATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
19 4 0.17
20 7 0.30
21 8 0.35
23 4 0.17
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (21 bp):
AATTATTTTATTTTTCAAAAT
Found at i:7070378 original size:89 final size:88
Alignment explanation
Indices: 7070255--7070478 Score: 295
Period size: 89 Copynumber: 2.5 Consensus size: 88
7070245 TTAGAAAATT
* * * * *
7070255 AATAATACGCAACAAATTAAATTTACAAACACAAGAAAATACAAACATTCTAGAATATTAATACA
1 AATAATAC-AAACAAATTAAATTTACAGATACAAGAAAATACAAACATTCTAAAAAATTAATACA
7070320 CAAAAATATAAAATTCGAACAACA
65 CAAAAATATAAAATTCGAACAACA
* * *
7070344 AATAATACAAACTAAATTAAATTTATAGATACAAGAAAATAAAAACTTTCTAAAAAATTAATACA
1 AATAATACAAAC-AAATTAAATTTACAGATACAAGAAAATACAAACATTCTAAAAAATTAATACA
*
7070409 CGAAAATATAAAATTCGAACAACA
65 CAAAAATATAAAATTCGAACAACA
* ** *
7070433 AATAATACAGACAAAATTTGATTTACAGATACAAAAATAATACAAA
1 AATAATACAAAC-AAATTAAATTTACAGATACAAGAA-AATACAAA
7070479 AATTTTGAAT
Statistics
Matches: 117, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
88 3 0.03
89 107 0.91
90 7 0.06
ACGTcount: A:0.59, C:0.13, G:0.05, T:0.23
Consensus pattern (88 bp):
AATAATACAAACAAATTAAATTTACAGATACAAGAAAATACAAACATTCTAAAAAATTAATACAC
AAAAATATAAAATTCGAACAACA
Found at i:7073059 original size:8 final size:8
Alignment explanation
Indices: 7073046--7073070 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
7073036 GTTTAACCAG
7073046 AATAATAA
1 AATAATAA
7073054 AATAATAA
1 AATAATAA
7073062 AATAATAA
1 AATAATAA
7073070 A
1 A
7073071 CAATTTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAATAA
Found at i:7074976 original size:74 final size:74
Alignment explanation
Indices: 7074896--7075040 Score: 236
Period size: 74 Copynumber: 2.0 Consensus size: 74
7074886 ACTAATTTGT
* * *
7074896 GTTCATAAATAATTTGTATCTATGTTCATAAATAAATATAAAATTATGTTAATATAAATAAAAAA
1 GTTCATAAATAATTTGTATCTACGTTCATAAATAAATATAAAATTATATTAAGATAAATAAAAAA
*
7074961 TTAATTTAC
66 ATAATTTAC
* *
7074970 GTTCATAAATAATTTGTATCTACGTTCCTAAATAAATATATAATTATATTAAGATAAATAAAAAA
1 GTTCATAAATAATTTGTATCTACGTTCATAAATAAATATAAAATTATATTAAGATAAATAAAAAA
7075035 ATAATT
66 ATAATT
7075041 GTAATATATT
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
74 65 1.00
ACGTcount: A:0.49, C:0.06, G:0.06, T:0.39
Consensus pattern (74 bp):
GTTCATAAATAATTTGTATCTACGTTCATAAATAAATATAAAATTATATTAAGATAAATAAAAAA
ATAATTTAC
Found at i:7079086 original size:14 final size:14
Alignment explanation
Indices: 7079067--7079095 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
7079057 CATCTCTCTA
7079067 ATAAGCTGGCTCAT
1 ATAAGCTGGCTCAT
7079081 ATAAGCTGGCTCAT
1 ATAAGCTGGCTCAT
7079095 A
1 A
7079096 AAGGCCACCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (14 bp):
ATAAGCTGGCTCAT
Found at i:7087490 original size:41 final size:41
Alignment explanation
Indices: 7087391--7087550 Score: 187
Period size: 41 Copynumber: 3.9 Consensus size: 41
7087381 TGTGTGATTC
* * * **
7087391 GTGTAAGACCATGTCTGGGACATTGGCATCGAAGTGAGAAAAT
1 GTGTAAGACCATGTCTGGGACATTGACATCGTA-T-ATAATTT
7087434 GTGTAAGACCATGTCTGGGACATTGACATCGTATATAATTT
1 GTGTAAGACCATGTCTGGGACATTGACATCGTATATAATTT
* * *
7087475 GTGTAAGACCCTGTCTGGGACATTGATATCGTATATAATTC
1 GTGTAAGACCATGTCTGGGACATTGACATCGTATATAATTT
* * * *
7087516 ATGTAAGACCCTGTCTGGGACAGTGGCATCG-ATAT
1 GTGTAAGACCATGTCTGGGACATTGACATCGTATAT
7087551 GTGATAACAT
Statistics
Matches: 105, Mismatches: 12, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
40 4 0.04
41 69 0.66
42 1 0.01
43 31 0.30
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (41 bp):
GTGTAAGACCATGTCTGGGACATTGACATCGTATATAATTT
Found at i:7093573 original size:17 final size:18
Alignment explanation
Indices: 7093547--7093580 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7093537 GTTTATTCAG
*
7093547 GATAATTACATG-AAATT
1 GATAAGTACATGTAAATT
7093564 GATAAGTACATGTAAAT
1 GATAAGTACATGTAAAT
7093581 GTATGTTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.47, C:0.06, G:0.15, T:0.32
Consensus pattern (18 bp):
GATAAGTACATGTAAATT
Found at i:7095027 original size:16 final size:16
Alignment explanation
Indices: 7095006--7095073 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
7094996 TTTGGTTCGC
7095006 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
7095022 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
7095038 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* * *
7095054 TGTAATAGAATAGAGG
1 TGTATTGGATTAGAGG
7095070 TGTA
1 TGTA
7095074 ATAGCAAATC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.29, C:0.00, G:0.35, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:7095110 original size:45 final size:44
Alignment explanation
Indices: 7095054--7095151 Score: 133
Period size: 45 Copynumber: 2.2 Consensus size: 44
7095044 GGATTAGAGG
* *
7095054 TGTAATAGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATAGAATAGAGGCGTAATAGCAAAAC-ACTGTTTGGTTGAA
* * **
7095099 TGTAATGGAATAGAGGCGTAATAGTAAAACTGTGTTTGGTTGAA
1 TGTAATAGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
7095143 TGTAATAGA
1 TGTAATAGA
7095152 GGTGTAATAG
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 20 0.43
45 26 0.57
ACGTcount: A:0.37, C:0.05, G:0.27, T:0.32
Consensus pattern (44 bp):
TGTAATAGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
Found at i:7095331 original size:18 final size:17
Alignment explanation
Indices: 7095310--7095344 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7095300 TTATTATTTA
*
7095310 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
7095328 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
7095345 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:7095338 original size:28 final size:27
Alignment explanation
Indices: 7095268--7095340 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
7095258 TTTATTATCA
*
7095268 AAAATAAATAATTTAATCATATTTAAAC
1 AAAATATATAATTTAAT-ATATTTAAAC
* * **
7095296 ATAAT-TATTATTTAATATATTTTAATT
1 AAAATATATAATTTAATATA-TTTAAAC
7095323 AAAATATATAATTTAATA
1 AAAATATATAATTTAATA
7095341 AAATTCTTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
26 3 0.08
27 18 0.50
28 15 0.42
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (27 bp):
AAAATATATAATTTAATATATTTAAAC
Found at i:7095435 original size:147 final size:149
Alignment explanation
Indices: 7095229--7095503 Score: 509
Period size: 147 Copynumber: 1.9 Consensus size: 149
7095219 ATGATTATTG
*
7095229 TTATTGTTATTTAAATTTTAATAAGATTATTTATTATCAAAAATAAATAATTTAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
*
7095294 ACATAATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
66 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
7095359 AGAAATTTGTTTTGGTAAA
131 AGAAATTTGTTTTGGTAAA
*
7095378 TTATT-TTATTTAAATTTTAATAAGATTA-TTAATATCAATAATAAATAATTTAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
7095441 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
66 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
7095504 ATATTCTTAT
Statistics
Matches: 123, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
147 95 0.77
148 23 0.19
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (149 bp):
TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
AGAAATTTGTTTTGGTAAA
Found at i:7095478 original size:18 final size:17
Alignment explanation
Indices: 7095457--7095491 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7095447 TTATTATTAA
*
7095457 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
7095475 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
7095492 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:7095535 original size:54 final size:54
Alignment explanation
Indices: 7095477--7095655 Score: 128
Period size: 55 Copynumber: 3.1 Consensus size: 54
7095467 ATTAAAATAT
*
7095477 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAACC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
** * * * * *
7095531 ATAATATATGATACTGTAAAATAT-AAAATAACATAATTATTATTAAATAT-AATATAATTAAAA
1 ATAAT-T-T-A-A---TAAAAT-TCTTAATAA-TTAA-TATTCTT--ATATGAAT-TTACTCAAA
*
7095594 TAT
53 -AC
*
7095597 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
7095651 ATAAT
1 ATAAT
7095656 ATATGATACT
Statistics
Matches: 91, Mismatches: 18, Indels: 32
0.65 0.13 0.23
Matches are distributed among these distances:
54 10 0.11
55 11 0.12
56 4 0.04
57 7 0.08
58 5 0.05
59 11 0.12
61 11 0.12
62 5 0.05
63 7 0.08
64 4 0.04
65 11 0.12
66 5 0.05
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.41
Consensus pattern (54 bp):
ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
Found at i:7095598 original size:18 final size:17
Alignment explanation
Indices: 7095577--7095611 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7095567 TTATTATTAA
7095577 ATATAATATAATTAAAAT
1 ATATAATATAA-TAAAAT
*
7095595 ATATAATTTAATAAAAT
1 ATATAATATAATAAAAT
7095612 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
ATATAATATAATAAAAT
Found at i:7095726 original size:18 final size:17
Alignment explanation
Indices: 7095687--7095718 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
7095677 TTTTAAATAA
7095687 TTAATATTAAATATATT
1 TTAATATTAAATATATT
7095704 TTAAT-TTAAATATAT
1 TTAATATTAAATATAT
7095719 GATTTAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTAATATTAAATATATT
Found at i:7095743 original size:120 final size:120
Alignment explanation
Indices: 7095440--7095732 Score: 482
Period size: 120 Copynumber: 2.4 Consensus size: 120
7095430 ATCATATTTA
7095440 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
7095505 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTGTAAAATATAAAAT
66 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATATAAAAT
* *
7095560 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* *
7095625 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATA-AAATTTT
66 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATATAAA--AT
* * *
7095681 AA-ATAATTAATATTAAATATATTTTAATTTAAATATATGATTTAATAAAATT
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
7095733 TAAAATAATT
Statistics
Matches: 161, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
119 3 0.02
120 155 0.96
121 3 0.02
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAACCATAATATATGATACTATAAAATATAAAAT
Found at i:7097547 original size:20 final size:19
Alignment explanation
Indices: 7097488--7097534 Score: 85
Period size: 19 Copynumber: 2.4 Consensus size: 19
7097478 CAACTACACA
7097488 AATTCACAATGTAACCTACT
1 AATT-ACAATGTAACCTACT
7097508 AATTACAATGTAACCTACT
1 AATTACAATGTAACCTACT
7097527 AATTACAA
1 AATTACAA
7097535 CTTCGACCTA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 23 0.85
20 4 0.15
ACGTcount: A:0.45, C:0.21, G:0.04, T:0.30
Consensus pattern (19 bp):
AATTACAATGTAACCTACT
Done.