Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 250 of 349
Found at i:82851822 original size:47 final size:47
Alignment explanation
Indices: 82851768--82851960 Score: 242
Period size: 47 Copynumber: 4.1 Consensus size: 47
82851758 TAGGATTTTT
** * * *
82851768 TGTGATGAATGTGAATGTGTATATATGAGATAAGGCCAAATGGCCAA
1 TGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCAA
*
82851815 TGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAA
1 TGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCAA
* * *
82851862 TGTGATGAATGTGAGCATGAATATGTGTGATAAGGTCGAATGGCCAA
1 TGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCAA
* * * * ** *
82851909 TGTGGTGAATATGAACATGCATATATGTGGTAAATCCGAATGGCTAA
1 TGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCAA
82851956 TGTGA
1 TGTGA
82851961 AATATGTATG
Statistics
Matches: 126, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 126 1.00
ACGTcount: A:0.34, C:0.10, G:0.28, T:0.28
Consensus pattern (47 bp):
TGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCAA
Found at i:82852085 original size:98 final size:96
Alignment explanation
Indices: 82851931--82852114 Score: 289
Period size: 98 Copynumber: 1.9 Consensus size: 96
82851921 GAACATGCAT
* * *
82851931 ATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTAAAATATATATGAGATATGTATATGTGGTAAAGCCGA
82851996 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
*
82852027 ATATGTGGTAAAGCTGAATGG-TCAATGTCAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGT-AAA-ATATATATGAGATATGTATATGTGGTAAAGC
*
82852091 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
82852115 GGCGATGTGC
Statistics
Matches: 80, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
95 1 0.01
96 24 0.30
97 2 0.03
98 53 0.66
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.32
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTAAAATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:82852130 original size:50 final size:48
Alignment explanation
Indices: 82851930--82852114 Score: 282
Period size: 48 Copynumber: 3.8 Consensus size: 48
82851920 TGAACATGCA
*
82851930 TATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
82851978 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * * *
82852026 CATATGTGGTAAAGCTGAATGG-TCAATGTCAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGT-GAA-ATATGTATGAGATATG
*
82852076 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
82852115 GGCGATGTGC
Statistics
Matches: 123, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
47 1 0.01
48 78 0.63
49 4 0.03
50 39 0.32
51 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.25, T:0.32
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:82852372 original size:36 final size:37
Alignment explanation
Indices: 82852260--82852403 Score: 254
Period size: 37 Copynumber: 3.9 Consensus size: 37
82852250 GAAAATATAT
82852260 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
82852297 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
82852334 TCCGGGTAAGACCCGATGACTAC-TGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
82852370 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
82852404 TCGTCTGAGC
Statistics
Matches: 103, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
36 33 0.32
37 70 0.68
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:82852380 original size:73 final size:74
Alignment explanation
Indices: 82852260--82852403 Score: 254
Period size: 73 Copynumber: 2.0 Consensus size: 74
82852250 GAAAATATAT
*
82852260 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATAACTACGTGTG
82852325 GAGATTATG
66 GAGATTATG
* *
82852334 TCCGGGTAAGACCCGATGACTAC-TGTGGAGATTTTGTCCGGGTAAGACCCGATAACTTCGTGTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATAACTACGTGTG
82852398 GAGATT
66 GAGATT
82852404 TCGTCTGAGC
Statistics
Matches: 67, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
73 44 0.66
74 23 0.34
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (74 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATAACTACGTGTG
GAGATTATG
Found at i:82874554 original size:93 final size:93
Alignment explanation
Indices: 82874410--82874578 Score: 220
Period size: 93 Copynumber: 1.8 Consensus size: 93
82874400 TGAGAGCTAG
* * * * *
82874410 TGTAAGACCTGTTTGGGACATGGCATCAGCCTCAATATATGCAAGCTAGTGTAAGACTTGTCTAG
1 TGTAAGACCTGTTTGGAACATGGCATCAGACACAATATATGCAAGCCAGTGTAAGACCTGTCT-G
82874475 GG-CATGGCATCAGCTTGAGGTGTGTTAA
65 GGACATGGCATCAGCTTGAGGTGTGTTAA
*
82874503 TGTAAGACCTGTTTGGAATATGGCATC-GACACAGATA-AGTG-AGAGCCAGTGTAAGACCTGTC
1 TGTAAGACCTGTTTGGAACATGGCATCAGACACA-ATATA-TGCA-AGCCAGTGTAAGACCTGTC
82874565 TGGGACATGGCATC
63 TGGGACATGGCATC
82874579 GGCCTCGATG
Statistics
Matches: 66, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
92 9 0.14
93 57 0.86
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (93 bp):
TGTAAGACCTGTTTGGAACATGGCATCAGACACAATATATGCAAGCCAGTGTAAGACCTGTCTGG
GACATGGCATCAGCTTGAGGTGTGTTAA
Found at i:82874577 original size:49 final size:48
Alignment explanation
Indices: 82874359--82874579 Score: 177
Period size: 49 Copynumber: 4.6 Consensus size: 48
82874349 AATGTTTGTC
* * *
82874359 AGTGTAAGACCTATCTGGTACATGGCACCGACACAGATAAGTGAGAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACACA-ATAAGTGAGAGCT
* * *
82874408 AGTGTAAGACCTGTTTGGGACATGGCATCAGCCTCAATATA-TGCA-AGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATC-GACACAATA-AGTG-AGAGCT
* * * * * * *
82874457 AGTGTAAGACTTGTCTAGGG-CATGGCATC-A-GC-TTGAG-GTGTGTT
1 AGTGTAAGACCTGTCT-GGGACATGGCATCGACACAATAAGTGAGAGCT
* * * * *
82874501 AATGTAAGACCTGTTTGGAATATGGCATCGACACAGATAAGTGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACACA-ATAAGTGAGAGCT
82874550 AGTGTAAGACCTGTCTGGGACATGGCATCG
1 AGTGTAAGACCTGTCTGGGACATGGCATCG
82874580 GCCTCGATGC
Statistics
Matches: 129, Mismatches: 31, Indels: 24
0.70 0.17 0.13
Matches are distributed among these distances:
43 2 0.02
44 25 0.19
45 2 0.02
46 2 0.02
48 3 0.02
49 86 0.67
50 9 0.07
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACACAATAAGTGAGAGCT
Found at i:82874617 original size:142 final size:142
Alignment explanation
Indices: 82874361--82874626 Score: 372
Period size: 142 Copynumber: 1.9 Consensus size: 142
82874351 TGTTTGTCAG
* * *
82874361 TGTAAGACCTATCTGGTACATGGCACCGACACAGATAAGTGAGAGCTAGTGTAAGACCTGTTTGG
1 TGTAAGACCTATCTGGAACATGGCACCGACACAGATAAGTGAGAGCCAGTGTAAGACCTGTCTGG
* * * *
82874426 GACATGGCATCAGCCTCAATATATGCAAGCTAGTGTAAGACTTGTCTAGGGCATGGCATCAGCTT
66 GACATGGCATCAGCCTCAATACATGCAAGCTAATGTAAGACCTGTCTAGGACATGGCATCAGCTT
82874491 GAGGTGTGTTAA
131 GAGGTGTGTTAA
* * * *
82874503 TGTAAGACCTGTTTGGAATATGGCATCGACACAGATAAGTGAGAGCCAGTGTAAGACCTGTCTGG
1 TGTAAGACCTATCTGGAACATGGCACCGACACAGATAAGTGAGAGCCAGTGTAAGACCTGTCTGG
* * * * *
82874568 GACATGGCATCGGCCTCGATGCATGGAAG-TCAATGTAAGGCCTGTCTAGGACATGGCAT
66 GACATGGCATCAGCCTCAATACATGCAAGCT-AATGTAAGACCTGTCTAGGACATGGCAT
82874627 TGATTTAGAT
Statistics
Matches: 107, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
141 1 0.01
142 106 0.99
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (142 bp):
TGTAAGACCTATCTGGAACATGGCACCGACACAGATAAGTGAGAGCCAGTGTAAGACCTGTCTGG
GACATGGCATCAGCCTCAATACATGCAAGCTAATGTAAGACCTGTCTAGGACATGGCATCAGCTT
GAGGTGTGTTAA
Found at i:82882426 original size:49 final size:47
Alignment explanation
Indices: 82882354--82882458 Score: 111
Period size: 49 Copynumber: 2.2 Consensus size: 47
82882344 GGTGTGTCAA
* * *
82882354 TGTAAGACCTATCTGGGACATGGCATCAACACAAATAAGTAAGAGCCAG
1 TGTAAGACCTACCTAGGACATGGCACCAACACAAAT--GTAAGAGCCAG
* * * ** *
82882403 TGTAAGACCTGCCTAGGATATGGCACCGACTTAGATGTAAGAGCCAG
1 TGTAAGACCTACCTAGGACATGGCACCAACACAAATGTAAGAGCCAG
82882450 TGTAAGACC
1 TGTAAGACC
82882459 ATGTTTGGAA
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
47 20 0.43
49 27 0.57
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (47 bp):
TGTAAGACCTACCTAGGACATGGCACCAACACAAATGTAAGAGCCAG
Found at i:82883447 original size:39 final size:39
Alignment explanation
Indices: 82883391--82883468 Score: 111
Period size: 39 Copynumber: 2.0 Consensus size: 39
82883381 GCAGAGACAA
* * * * *
82883391 TGTAACACCCCGTACCCGAGTCGGTCGCCGGAGTCGGAC
1 TGTAACACCCCGAACCCGAGACCGACACCGGAGTCGGAC
82883430 TGTAACACCCCGAACCCGAGACCGACACCGGAGTCGGAC
1 TGTAACACCCCGAACCCGAGACCGACACCGGAGTCGGAC
82883469 ACGAGATGTT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.23, C:0.37, G:0.28, T:0.12
Consensus pattern (39 bp):
TGTAACACCCCGAACCCGAGACCGACACCGGAGTCGGAC
Found at i:82883579 original size:83 final size:81
Alignment explanation
Indices: 82883440--82883592 Score: 279
Period size: 83 Copynumber: 1.9 Consensus size: 81
82883430 TGTAACACCC
82883440 CGAACCCGAGACCGACACCGGAGTCGGACACGAGATGTTAACAAACTTTGAAAAATTTTTCCAGA
1 CGAACCCGAGACCGACACCGGAGTCGGACACGAGATGTTAACAAACTTTGAAAAA--TTTCCAGA
82883505 CACTGCCCAGTCTGAGTA
64 CACTGCCCAGTCTGAGTA
*
82883523 CGAACCCGAGACCGACACCGTAGTCGGACACGAGATGTTAACAAACTTTGAAAAATTTCCAGACA
1 CGAACCCGAGACCGACACCGGAGTCGGACACGAGATGTTAACAAACTTTGAAAAATTTCCAGACA
82883588 CTGCC
66 CTGCC
82883593 ATCTGCTGAG
Statistics
Matches: 69, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
81 15 0.22
83 54 0.78
ACGTcount: A:0.33, C:0.27, G:0.21, T:0.18
Consensus pattern (81 bp):
CGAACCCGAGACCGACACCGGAGTCGGACACGAGATGTTAACAAACTTTGAAAAATTTCCAGACA
CTGCCCAGTCTGAGTA
Found at i:82884942 original size:39 final size:40
Alignment explanation
Indices: 82884899--82885068 Score: 166
Period size: 39 Copynumber: 4.3 Consensus size: 40
82884889 TCCTCGTTCA
* *
82884899 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACG
* * *
82884938 AATGCCTTCGGGACATAACACGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACG
* ** * *
82884978 AATGCCTTCGGGACTTAACCCGGATTTAGTTATGTCGCACA
1 AATGCCTTCGGGACATAACCCGGATTTAG-TAACTCACACG
* * * * *
82885019 AAGGCCTTCGGG-CTTAACCCGGAATTT-GTATCTCGCACA
1 AATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCACACG
82885058 AATGCCTTCGG
1 AATGCCTTCGG
82885069 ATCTTAGTCC
Statistics
Matches: 114, Mismatches: 14, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
39 54 0.47
40 37 0.32
41 23 0.20
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACG
Found at i:82885002 original size:40 final size:39
Alignment explanation
Indices: 82884899--82885121 Score: 191
Period size: 40 Copynumber: 5.6 Consensus size: 39
82884889 TCCTCGTTCA
* * * *
82884899 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
82884938 AATGCCTTCGGGACATAACACGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
**
82884977 GAATGCCTTCGGGACTTAACCCGGATTTAGTTATGTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAG-TAACTCGCAC
* *
82885018 AAAGGCCTTCGGG-CTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
82885057 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
82885098 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
82885122 CAGCATTCAA
Statistics
Matches: 153, Mismatches: 23, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.01
39 55 0.36
40 65 0.42
41 31 0.20
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:82885130 original size:41 final size:41
Alignment explanation
Indices: 82885053--82885130 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
82885043 TTTGTATCTC
* * *
82885053 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
82885094 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
82885131 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:82888185 original size:79 final size:80
Alignment explanation
Indices: 82888017--82888201 Score: 189
Period size: 79 Copynumber: 2.3 Consensus size: 80
82888007 GCTACTCGTT
* * * * *
82888017 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGTACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCAGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGAGACTTAACCCG
* *
82888081 GATTTAGTAACTCGCAC
64 GATATAGTAACTAGCAC
* **
82888098 CAATGCCTTCAGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC-AGATCTTAGTCCGG
1 CAAAGCCTTCAGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGAGA-CTTAACCCGG
* *
82888161 ATATGGTCACTTAGCA-
65 ATATAGTAAC-TAGCAC
*
82888177 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCAGGACTTAGCCCGGA
82888202 CATCATTCGA
Statistics
Matches: 86, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
78 2 0.02
79 57 0.66
80 24 0.28
81 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCAGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGGA
TATAGTAACTAGCAC
Found at i:82888201 original size:40 final size:40
Alignment explanation
Indices: 82887998--82888201 Score: 211
Period size: 40 Copynumber: 5.1 Consensus size: 40
82887988 CGGAATTTAA
** *
82887998 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
82888038 CCGGTTATAGTAACTCGTACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
82888078 CCGGATTTAGTAACTCGCACCAATGCCTTCAGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
82888117 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-AGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
82888157 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
82888197 CCGGA
1 CCGGA
82888202 CATCATTCGA
Statistics
Matches: 138, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 1 0.01
39 33 0.24
40 93 0.67
41 11 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:82892277 original size:28 final size:28
Alignment explanation
Indices: 82892214--82892419 Score: 281
Period size: 28 Copynumber: 7.4 Consensus size: 28
82892204 ATAATAAGTC
* *
82892214 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
82892241 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
82892269 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
*
82892297 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
82892325 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
82892353 CGCACACTTAGTGCTACATAGTC-AATT
1 CGCACACTTAGTGCTACATAATCAAACT
* * * *
82892380 CGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAA-TCAAACT
82892409 CGCACACTTAG
1 CGCACACTTAG
82892420 CGCCAATCTC
Statistics
Matches: 164, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
27 43 0.26
28 108 0.66
29 13 0.08
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:82897006 original size:30 final size:30
Alignment explanation
Indices: 82896967--82897024 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
82896957 AAAATCATAT
* *
82896967 TTTGGCAAAATTAAATTTTTGCTCCTAAAC
1 TTTGGCAAAATTAAACTTTTGCCCCTAAAC
* *
82896997 TTTGTCAAAATTACACTTTTGCCCCTAA
1 TTTGGCAAAATTAAACTTTTGCCCCTAA
82897025 GCTCGTAAAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.21, G:0.09, T:0.40
Consensus pattern (30 bp):
TTTGGCAAAATTAAACTTTTGCCCCTAAAC
Found at i:82911276 original size:43 final size:43
Alignment explanation
Indices: 82911124--82911277 Score: 127
Period size: 43 Copynumber: 3.6 Consensus size: 43
82911114 GCTTTCATGG
*
82911124 AAGACCACATCTGGGACGTTGGCATCGACT-TATGATTTACGTAT
1 AAGACCACGTCTGGGACGTTGGCATCGA-TATATGA-TTACGTAT
* * ** * * * *
82911168 AAGACCATGCCTCAGACATTAGCATC-ATATATGATTTCGTGT
1 AAGACCACGTCTGGGACGTTGGCATCGATATATGATTACGTAT
* * * *
82911210 AAGACC-CTGTCTGGGATAG-TGGCATCGATATTTGATTACATCT
1 AAGACCAC-GTCTGGGA-CGTTGGCATCGATATATGATTACGTAT
82911253 AAGACCACGTCTGGGACGTTGGCAT
1 AAGACCACGTCTGGGACGTTGGCAT
82911278 TGTACGAGCT
Statistics
Matches: 83, Mismatches: 21, Indels: 13
0.71 0.18 0.11
Matches are distributed among these distances:
42 25 0.30
43 38 0.46
44 20 0.24
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (43 bp):
AAGACCACGTCTGGGACGTTGGCATCGATATATGATTACGTAT
Found at i:82922929 original size:48 final size:48
Alignment explanation
Indices: 82922858--82923003 Score: 238
Period size: 48 Copynumber: 3.0 Consensus size: 48
82922848 CAAGATAAAT
* *
82922858 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
82922906 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATAAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
82922954 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
82923002 AT
1 AT
82923004 GTGTGTATAT
Statistics
Matches: 89, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 89 1.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:82923194 original size:37 final size:37
Alignment explanation
Indices: 82923144--82923251 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
82923134 GGAAATATAT
82923144 TCCGGGTAAGACCCGATGACTACGTGTGGAGA-TTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGACTT-TG
82923181 TCCGGGTAAGACCCGATGACTACGTGTGGAGACTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGACTTTG
* *
82923218 TCCGGGTAAGACCCGATAACTACGTGTGGGGACT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGACT
82923252 ATTCGAGCTA
Statistics
Matches: 68, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
37 66 0.97
38 2 0.03
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGACTTTG
Found at i:82926686 original size:31 final size:32
Alignment explanation
Indices: 82926638--82926709 Score: 110
Period size: 31 Copynumber: 2.2 Consensus size: 32
82926628 GTGTTATATT
82926638 TTTTTGTACATAATTAAATATTTTTATTTTT-A
1 TTTTT-TACATAATTAAATATTTTTATTTTTAA
*
82926670 TTTTTTACTTAATTAAATATTTTTATTTTTAA
1 TTTTTTACATAATTAAATATTTTTATTTTTAA
82926702 TCTTTTTA
1 T-TTTTTA
82926710 TTTACCTTGT
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
31 24 0.65
32 7 0.19
33 6 0.16
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.65
Consensus pattern (32 bp):
TTTTTTACATAATTAAATATTTTTATTTTTAA
Found at i:82930342 original size:21 final size:21
Alignment explanation
Indices: 82930318--82930360 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
82930308 TATTTGACCC
82930318 TTCAACAACATTTTACGTTAT
1 TTCAACAACATTTTACGTTAT
82930339 TTCAACAACATTTTACGTTAT
1 TTCAACAACATTTTACGTTAT
82930360 T
1 T
82930361 ACCCTGAACG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.19, G:0.05, T:0.44
Consensus pattern (21 bp):
TTCAACAACATTTTACGTTAT
Found at i:82932891 original size:43 final size:43
Alignment explanation
Indices: 82932809--82932964 Score: 131
Period size: 43 Copynumber: 3.7 Consensus size: 43
82932799 TGAGACATCA
* * * * *
82932809 TGTAAGACCGTGTCTAGGACA-CAGGCCTCGAT-TGAGATTTATG
1 TGTAAGACCATGTCTGGGACATC-GGCATCGATAT-TGATTTACG
*
82932852 TATAAGACCATGTCTGGGACATCGGCATCG-TATCTGATTT-CG
1 TGTAAGACCATGTCTGGGACATCGGCATCGATAT-TGATTTACG
* ** * *
82932894 TGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGAATTACA
1 TGTAAGACCATGTCTGGGACATCGGCATCGATATTGATTTACG
* **
82932937 TGTAAGACCACGTCCAGGACATCGGCAT
1 TGTAAGACCATGTCTGGGACATCGGCAT
82932965 TGTACTTGTT
Statistics
Matches: 90, Mismatches: 19, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
42 33 0.37
43 56 0.62
44 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATCGGCATCGATATTGATTTACG
Found at i:82935658 original size:34 final size:34
Alignment explanation
Indices: 82935604--82935681 Score: 95
Period size: 34 Copynumber: 2.3 Consensus size: 34
82935594 TGTATACTGT
* * *
82935604 ACTGATACTGTTACTGAAATGGGCTCAGGCCTAG
1 ACTGATACTATTACTAAAATGGGCTAAGGCCTAG
*
82935638 ACTGCTACTATTACTAAAATGGGCTAAGGCCCTA-
1 ACTGATACTATTACTAAAATGGGCTAAGG-CCTAG
*
82935672 ACTGAGACTA
1 ACTGATACTA
82935682 CAAGGGTTTA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
34 33 0.89
35 4 0.11
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.26
Consensus pattern (34 bp):
ACTGATACTATTACTAAAATGGGCTAAGGCCTAG
Found at i:82936432 original size:41 final size:41
Alignment explanation
Indices: 82936387--82936469 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
82936377 ACCAAATTTT
82936387 ATTATGACACTCCAATAACTTTATAAATATTAAATAAATAA
1 ATTATGACACTCCAATAACTTTATAAATATTAAATAAATAA
82936428 ATTATGACACTCCAATAACTTTATAAATATTAAATAAATAA
1 ATTATGACACTCCAATAACTTTATAAATATTAAATAAATAA
82936469 A
1 A
82936470 ATTTTCTGAC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.52, C:0.12, G:0.02, T:0.34
Consensus pattern (41 bp):
ATTATGACACTCCAATAACTTTATAAATATTAAATAAATAA
Found at i:82937004 original size:69 final size:69
Alignment explanation
Indices: 82936893--82937033 Score: 219
Period size: 69 Copynumber: 2.0 Consensus size: 69
82936883 AGAGACATTC
* * * * * *
82936893 TCTCGGTAACCTCGTACGGACCAATAAATCTTAGACTTAGTCTTCTTTTTCATCTAAAGGAAAGA
1 TCTCGATAACCTCATACGGACCAATAAATCTTAGACTGAGTCTTCTTTTTCATCCAAAAGAAAAA
82936958 ACTT
66 ACTT
*
82936962 TCTCGATAACCTCATACGGACCAATAAATCTTGGACTGAGTCTTCTTTTTCATCCAAAAGAAAAA
1 TCTCGATAACCTCATACGGACCAATAAATCTTAGACTGAGTCTTCTTTTTCATCCAAAAGAAAAA
82937027 ACTT
66 ACTT
82937031 TCT
1 TCT
82937034 TCTGGGGTGA
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
69 65 1.00
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.33
Consensus pattern (69 bp):
TCTCGATAACCTCATACGGACCAATAAATCTTAGACTGAGTCTTCTTTTTCATCCAAAAGAAAAA
ACTT
Found at i:82938166 original size:24 final size:24
Alignment explanation
Indices: 82938139--82938185 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
82938129 ACCCATGTTG
82938139 TTGCTTATTGAACTATGGTCTTAA
1 TTGCTTATTGAACTATGGTCTTAA
82938163 TTGCTTATTGAACTATGGTCTTA
1 TTGCTTATTGAACTATGGTCTTA
82938186 CTTGTCAGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.23, C:0.13, G:0.17, T:0.47
Consensus pattern (24 bp):
TTGCTTATTGAACTATGGTCTTAA
Found at i:82944559 original size:27 final size:27
Alignment explanation
Indices: 82944521--82944574 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
82944511 AACCTAAAGA
82944521 AAGAAAATAGATGAAATAGTCATTACT
1 AAGAAAATAGATGAAATAGTCATTACT
82944548 AAGAAAATAGATGAAATAGTCATTACT
1 AAGAAAATAGATGAAATAGTCATTACT
82944575 GAAAATCCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.52, C:0.07, G:0.15, T:0.26
Consensus pattern (27 bp):
AAGAAAATAGATGAAATAGTCATTACT
Found at i:82948339 original size:30 final size:30
Alignment explanation
Indices: 82948305--82948361 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
82948295 CTTTAATATG
*
82948305 AACTTTGGCAAAATTACATTTTTGCCCTTA
1 AACTTTGGCAAAATTACACTTTTGCCCTTA
* *
82948335 AACTTTTGCATAATTACACTTTTGCCC
1 AACTTTGGCAAAATTACACTTTTGCCC
82948362 CTAGGCTCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCTTA
Found at i:82951080 original size:39 final size:40
Alignment explanation
Indices: 82950980--82951164 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
82950970 TTGAATGATG
* * *
82950980 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
82951019 ATCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
82951060 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
82951099 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
82951138 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
82951165 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 36 0.29
40 78 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:82951120 original size:79 final size:81
Alignment explanation
Indices: 82950980--82951164 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
82950970 TTGAATGATG
* *
82950980 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCTGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
82951044 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
82951059 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
82951121 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
82951139 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
82951165 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:82951186 original size:79 final size:79
Alignment explanation
Indices: 82951033--82951187 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
82951023 GGACTAAGAT
* ** *
82951033 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
82951098 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
82951112 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-C
*
82951175 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
82951188 ATTCGAAGGT
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 39 0.59
80 25 0.38
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAGTC
Found at i:83067393 original size:41 final size:41
Alignment explanation
Indices: 83067329--83067411 Score: 148
Period size: 41 Copynumber: 2.0 Consensus size: 41
83067319 ATGCCTAAAG
* *
83067329 AACTATCACAATATTTTCTAAGTTTACAAAGAAGAGTTATT
1 AACTATCACAATACTTTCGAAGTTTACAAAGAAGAGTTATT
83067370 AACTATCACAATACTTTCGAAGTTTACAAAGAAGAGTTATT
1 AACTATCACAATACTTTCGAAGTTTACAAAGAAGAGTTATT
83067411 A
1 A
83067412 TACTCATTGA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (41 bp):
AACTATCACAATACTTTCGAAGTTTACAAAGAAGAGTTATT
Found at i:83082325 original size:17 final size:17
Alignment explanation
Indices: 83082303--83082338 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
83082293 CCTGGTCTCT
* *
83082303 ATGCGACTACCTAACTG
1 ATGCGAATACCCAACTG
83082320 ATGCGAATACCCAACTG
1 ATGCGAATACCCAACTG
83082337 AT
1 AT
83082339 ACATTCGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.22
Consensus pattern (17 bp):
ATGCGAATACCCAACTG
Found at i:83089733 original size:17 final size:18
Alignment explanation
Indices: 83089707--83089745 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
83089697 CATATTGTGG
83089707 AAAA-TGTTCTC-AATAT
1 AAAATTGTTCTCTAATAT
*
83089723 AAAATTGTTCTCTCATAT
1 AAAATTGTTCTCTAATAT
83089741 AAAAT
1 AAAAT
83089746 CAAAAGCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 7 0.35
18 9 0.45
ACGTcount: A:0.44, C:0.13, G:0.05, T:0.38
Consensus pattern (18 bp):
AAAATTGTTCTCTAATAT
Found at i:83093286 original size:15 final size:15
Alignment explanation
Indices: 83093276--83093305 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
83093266 TCCCTTCTTG
83093276 ACCACGACCTTTTCC
1 ACCACGACCTTTTCC
*
83093291 ACCACGACCATTTCC
1 ACCACGACCTTTTCC
83093306 TCGATCTCCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.47, G:0.07, T:0.23
Consensus pattern (15 bp):
ACCACGACCTTTTCC
Found at i:83094071 original size:17 final size:18
Alignment explanation
Indices: 83094045--83094083 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
83094035 CAAATTGTGG
83094045 AAAA-TGTTCTC-AATAT
1 AAAATTGTTCTCTAATAT
*
83094061 AAAATTGTTCTCTCATAT
1 AAAATTGTTCTCTAATAT
83094079 AAAAT
1 AAAAT
83094084 CAAAAGCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 7 0.35
18 9 0.45
ACGTcount: A:0.44, C:0.13, G:0.05, T:0.38
Consensus pattern (18 bp):
AAAATTGTTCTCTAATAT
Found at i:83094260 original size:15 final size:15
Alignment explanation
Indices: 83094240--83094270 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
83094230 AAAACAATAT
83094240 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
83094255 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
83094270 A
1 A
83094271 CTTACATGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.32, G:0.06, T:0.39
Consensus pattern (15 bp):
AACTCTTGACCTTTC
Found at i:83099716 original size:37 final size:37
Alignment explanation
Indices: 83099610--83099718 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
83099600 AGCTCAGACG
* * **
83099610 AAATCTCCACACGAAGTTATCGGGTCTTACCTAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
83099647 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
83099684 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
83099719 ATATATTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:83099990 original size:48 final size:48
Alignment explanation
Indices: 83099864--83100048 Score: 282
Period size: 48 Copynumber: 3.8 Consensus size: 48
83099854 GCACATCGCC
* *
83099864 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTTATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC-T-CA
* * *
83099914 TATATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
83099962 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACCTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
83100010 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
83100049 TGCATGTTCA
Statistics
Matches: 124, Mismatches: 9, Indels: 6
0.89 0.06 0.04
Matches are distributed among these distances:
48 82 0.66
49 3 0.02
50 39 0.31
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:83100053 original size:98 final size:98
Alignment explanation
Indices: 83099864--83100047 Score: 293
Period size: 98 Copynumber: 1.9 Consensus size: 98
83099854 GCACATCGCC
* *
83099864 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTTATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTTACATACATATTTCACATT
83099929 GACCATTCAGCTTTACCACATATGCATATCTCA
66 GACCATTCAGCTTTACCACATATGCATATCTCA
* *
83099962 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACCTATC-T-CATACATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTTACATACATATTTCACATT
*
83100025 -AGCCATTCGGCTTTACCACATAT
66 GA-CCATTCAGCTTTACCACATAT
83100048 ATGCATGTTC
Statistics
Matches: 80, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
95 1 0.01
96 35 0.44
97 1 0.01
98 43 0.54
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (98 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTTACATACATATTTCACATT
GACCATTCAGCTTTACCACATATGCATATCTCA
Found at i:83100097 original size:47 final size:47
Alignment explanation
Indices: 83100018--83100211 Score: 271
Period size: 47 Copynumber: 4.1 Consensus size: 47
83100008 CATACATATT
* * * *
83100018 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * *
83100065 CCACATTGGCCATTCTGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
83100112 TCACATTGGCCATTCGGTCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
83100159 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
83100206 TCACAT
1 TCACAT
83100212 AAAATCCTAA
Statistics
Matches: 129, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 129 1.00
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:83100745 original size:14 final size:14
Alignment explanation
Indices: 83100728--83100756 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
83100718 AGAAGTAAAA
83100728 AAAAAGGGGTTATT
1 AAAAAGGGGTTATT
83100742 AAAAAGGGGTTATT
1 AAAAAGGGGTTATT
83100756 A
1 A
83100757 CCTTGTTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.28, T:0.28
Consensus pattern (14 bp):
AAAAAGGGGTTATT
Found at i:83101971 original size:28 final size:28
Alignment explanation
Indices: 83101906--83102056 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
83101896 GAGATTGGCG
* * * *
83101906 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
83101935 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
83101963 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
83101991 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
83102019 CTAAGTGTGCAAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
83102046 CTGAGTGTGCG
1 CTAAGTGTGCG
83102057 GACTTAATAT
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.20
28 75 0.66
29 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:83111400 original size:28 final size:28
Alignment explanation
Indices: 83111335--83111485 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
83111325 GAGATTGGCG
* * * *
83111335 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
83111364 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
83111392 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
83111420 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
83111448 CTAAGTGTGCAAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
83111475 CTGAGTGTGCG
1 CTAAGTGTGCG
83111486 GACTTAATAT
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.20
28 75 0.66
29 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:83118352 original size:40 final size:40
Alignment explanation
Indices: 83118320--83118789 Score: 773
Period size: 40 Copynumber: 11.8 Consensus size: 40
83118310 CCAGCATGAT
* * * *
83118320 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
83118360 TGCTTTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
83118400 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
83118440 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
83118480 TGCTCTTC-GGACTTAG-TCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
83118518 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
83118558 TGCTCTTCGAGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
83118598 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
83118638 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
83118678 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
83118718 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
83118758 TGCTCTTCGGGACTTAGCTCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
83118790 CTCAATTCTC
Statistics
Matches: 410, Mismatches: 18, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
38 29 0.07
39 16 0.04
40 365 0.89
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:83120092 original size:37 final size:37
Alignment explanation
Indices: 83120033--83120141 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
83120023 AGCTCAGACG
* *
83120033 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
83120070 AAATCTCCACACGTAGTCATCGGGTCTTACCCGTACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
83120107 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
83120142 ATATATTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:83120402 original size:97 final size:95
Alignment explanation
Indices: 83120287--83120468 Score: 303
Period size: 97 Copynumber: 1.9 Consensus size: 95
83120277 GCACATCGCC
*
83120287 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATT
83120352 -GACCATTCAGCTTTACCACATAGCATATCTCA
64 AG-CCATTCAGCTTTACCACATAGCATATCTCA
*
83120384 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
*
83120449 CCATTCGGCTTTACCACATA
66 CCATTCAGCTTTACCACATA
83120469 TATGCATGTT
Statistics
Matches: 81, Mismatches: 3, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
95 34 0.42
96 1 0.01
97 46 0.57
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (95 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCAGCTTTACCACATAGCATATCTCA
Found at i:83120445 original size:48 final size:48
Alignment explanation
Indices: 83120287--83120470 Score: 291
Period size: 48 Copynumber: 3.8 Consensus size: 48
83120277 GCACATCGCC
*
83120287 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
83120337 TATATATTTCACATT-GACCATTCAGCTTTACCACATA-GCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
83120384 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
83120432 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
83120471 TGCATGTTCA
Statistics
Matches: 124, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
47 34 0.27
48 49 0.40
49 9 0.07
50 32 0.26
ACGTcount: A:0.32, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:83120499 original size:95 final size:94
Alignment explanation
Indices: 83120303--83120598 Score: 311
Period size: 94 Copynumber: 3.1 Consensus size: 94
83120293 TTTCACACTA
* *
83120303 GCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTGACCATTCAGCTTTAC
1 GCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTG-CCATTCGGCTTTAC
* * *
83120368 CAC--ATA-GCATATCTCATACATAT-TTCACATTA
63 CACATATATGCATGT-TCAT--AT-TCATCACATTG
83120400 GCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCA
1 GCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATT-GCCATTCGGCTTTACCA
*
83120465 CATATATGCATGTTCATATTCACCACATTG
65 CATATATGCATGTTCATATTCATCACATTG
* * * * *
83120495 GCCATTCGGCCTTATCACACATATGCAT-GCTC--ACAT-TCATCACATTGGCCATTCGGCCTTA
1 GCCATTCGGCTTTA-C-CACATATACATATCTCATACATAT-TTCACATT-GCCATTCGGCTTTA
* *
83120556 TCACATATATGCATGTTCACATTCATCACATTG
62 CCACATATATGCATGTTCATATTCATCACATTG
83120589 GCCATTCGGC
1 GCCATTCGGC
83120599 CTTATCTCAT
Statistics
Matches: 176, Mismatches: 15, Indels: 19
0.84 0.07 0.09
Matches are distributed among these distances:
93 1 0.01
94 65 0.37
95 52 0.30
96 5 0.03
97 48 0.27
98 5 0.03
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.34
Consensus pattern (94 bp):
GCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTGCCATTCGGCTTTACCAC
ATATATGCATGTTCATATTCATCACATTG
Found at i:83120519 original size:47 final size:47
Alignment explanation
Indices: 83120440--83120633 Score: 289
Period size: 47 Copynumber: 4.1 Consensus size: 47
83120430 CATACATATT
* * * *
83120440 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
83120487 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
83120534 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
83120581 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
83120628 TCACAT
1 TCACAT
83120634 AAAATCCTAA
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 133 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:83120560 original size:22 final size:22
Alignment explanation
Indices: 83120533--83120604 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
83120523 GCTCACATTC
83120533 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
83120555 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
83120579 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
83120602 ATC
1 ATC
83120605 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:83120563 original size:94 final size:94
Alignment explanation
Indices: 83120393--83120633 Score: 290
Period size: 94 Copynumber: 2.6 Consensus size: 94
83120383 ATACATATTT
* * * *
83120393 CACATTAGCCATTCGGCTTTA-C-CACATATACATATCTCATACATAT-TTCACATTAGCCATTC
1 CACATTGGCCATTCGGCCTTATCACACATATACACA-CTC--ACAT-TCATCACATTAGCCATTC
* *
83120455 GGCTTTACCACATATATGCATGTTCATATTCAC
62 GGCCTTACCACATATATGCATGTTCACATTCAC
* ** *
83120488 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCC
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGGCC
* *
83120553 TTATCACATATATGCATGTTCACATTCAT
66 TTACCACATATATGCATGTTCACATTCAC
* * *
83120582 CACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACAT
83120634 AAAATCCTAA
Statistics
Matches: 127, Mismatches: 16, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
93 1 0.01
94 93 0.73
95 19 0.15
96 4 0.03
97 10 0.08
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (94 bp):
CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGGCC
TTACCACATATATGCATGTTCACATTCAC
Found at i:83128234 original size:48 final size:47
Alignment explanation
Indices: 83128123--83128300 Score: 275
Period size: 48 Copynumber: 3.7 Consensus size: 47
83128113 CACATAGTAA
* * *
83128123 GATGCCAATGCCATATCCTAGATATGGTCTTACATGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGATCACATATC
83128170 GATGCCAATGCCATGTCCCAGACATGGTCTTACATAGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACAT-GGATCACATATC
* *
83128218 GATGCCAATGCAATGTCCCAGACATGGTATTACATGAGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATG-GATCACATATC
* *
83128266 AATGTCAATGCCATGTCCCAGACATGGTCTTACAT
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACAT
83128301 AGGACTACAC
Statistics
Matches: 120, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
47 33 0.28
48 87 0.73
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (47 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGATCACATATC
Found at i:83128473 original size:34 final size:34
Alignment explanation
Indices: 83128434--83128503 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
83128424 CAATATCAAA
83128434 TATTAAATACATAATAATGTAACGTTGCATTACT
1 TATTAAATACATAATAATGTAACGTTGCATTACT
83128468 TATTAAATACATAATAATGTAACGTTGCATTACT
1 TATTAAATACATAATAATGTAACGTTGCATTACT
83128502 TA
1 TA
83128504 CACATGAACT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.41, C:0.11, G:0.09, T:0.39
Consensus pattern (34 bp):
TATTAAATACATAATAATGTAACGTTGCATTACT
Found at i:83134861 original size:11 final size:12
Alignment explanation
Indices: 83134836--83134864 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
83134826 ATAAAGAAAA
83134836 TAAAAGATATAC
1 TAAAAGATATAC
83134848 TAAAAGAT-TAC
1 TAAAAGATATAC
83134859 TAAAAG
1 TAAAAG
83134865 TGGGAACATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 9 0.53
12 8 0.47
ACGTcount: A:0.59, C:0.07, G:0.10, T:0.24
Consensus pattern (12 bp):
TAAAAGATATAC
Found at i:83136548 original size:46 final size:46
Alignment explanation
Indices: 83136481--83136658 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
83136471 TGTAACCCGC
* *
83136481 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTAGCAT
* *
83136527 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-TTAGCAT
* *** * ** *
83136573 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGATGTTAGCAT
*
83136620 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG
83136659 CTCAACCATC
Statistics
Matches: 109, Mismatches: 20, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
46 74 0.68
47 35 0.32
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGTTAGCAT
Found at i:83136601 original size:93 final size:93
Alignment explanation
Indices: 83136489--83136659 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
83136479 GCCCATAAGT
***
83136489 GAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83136554 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
83136582 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
83136647 CGAGTTCGGATGC
66 CGAGCTCGGATGC
83136660 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:83139067 original size:29 final size:29
Alignment explanation
Indices: 83139028--83139115 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
83139018 CAAAGATAAC
*
83139028 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
83139057 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
83139086 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
83139116 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:83139086 original size:15 final size:15
Alignment explanation
Indices: 83139028--83139106 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
83139018 CAAAGATAAC
*
83139028 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
83139042 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
83139057 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
83139071 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
83139086 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
83139101 AAGAAA
1 AAGAAA
83139107 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:83139115 original size:15 final size:15
Alignment explanation
Indices: 83139039--83139115 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
83139029 AGAAAACCGA
83139039 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
83139054 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
83139068 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
83139082 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
83139098 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
83139113 ATA
1 ATA
83139116 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:83144794 original size:18 final size:19
Alignment explanation
Indices: 83144771--83144807 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
83144761 GAATATATAT
83144771 TAATTACAAGTTT-ATTTG
1 TAATTACAAGTTTAATTTG
*
83144789 TAATTACAATTTTAATTTG
1 TAATTACAAGTTTAATTTG
83144808 ATAGTTTTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.35, C:0.05, G:0.08, T:0.51
Consensus pattern (19 bp):
TAATTACAAGTTTAATTTG
Found at i:83147330 original size:17 final size:17
Alignment explanation
Indices: 83147310--83147343 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
83147300 AGGTTTAGGT
83147310 TTAAAAATTTTAATTAA
1 TTAAAAATTTTAATTAA
**
83147327 TTAAATTTTTTAATTAA
1 TTAAAAATTTTAATTAA
83147344 AAATCTATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTAAAAATTTTAATTAA
Found at i:83148057 original size:21 final size:21
Alignment explanation
Indices: 83148016--83148056 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
83148006 TTAAAAAATA
* *
83148016 AAAAATTATTAAAATTATTTT
1 AAAAAGTATAAAAATTATTTT
83148037 AAAAAGTATAAAAA-TATTTT
1 AAAAAGTATAAAAATTATTTT
83148057 TTAATATCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.41
Consensus pattern (21 bp):
AAAAAGTATAAAAATTATTTT
Found at i:83150179 original size:19 final size:19
Alignment explanation
Indices: 83150141--83150179 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
83150131 GAACTACACC
*
83150141 TAATATATTTACTTTTTTT
1 TAATATATTTACTTTATTT
83150160 TAATATATTTA-TCTTATTT
1 TAATATATTTACT-TTATTT
83150179 T
1 T
83150180 CATTATTTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 1 0.06
19 17 0.94
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (19 bp):
TAATATATTTACTTTATTT
Found at i:83151139 original size:5 final size:5
Alignment explanation
Indices: 83151123--83151201 Score: 74
Period size: 5 Copynumber: 15.8 Consensus size: 5
83151113 TATGATCTTT
*
83151123 TTAAA TTAAAA TTAAA TTTAAA -T-AA TTAAA TTAAA TTAAA AT-AA TTAAA
1 TTAAA TT-AAA TTAAA -TTAAA TTAAA TTAAA TTAAA TTAAA TTAAA TTAAA
** *
83151172 TTAAA TTATAA AAAAA CTAAA TTAAA TTAA
1 TTAAA TTA-AA TTAAA TTAAA TTAAA TTAA
83151202 TACCTAGGTA
Statistics
Matches: 61, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
3 2 0.03
4 5 0.08
5 41 0.67
6 13 0.21
ACGTcount: A:0.62, C:0.01, G:0.00, T:0.37
Consensus pattern (5 bp):
TTAAA
Found at i:83151155 original size:19 final size:19
Alignment explanation
Indices: 83151126--83151199 Score: 94
Period size: 19 Copynumber: 3.7 Consensus size: 19
83151116 GATCTTTTTA
83151126 AATTAAAATTAAATTTAAAT
1 AATT-AAATTAAATTTAAAT
*
83151146 AATTAAATTAAATTAAAAT
1 AATTAAATTAAATTTAAAT
*
83151165 AATTAAATTAAATTATAAAAA
1 AATTAAATTAAATT-T-AAAT
*
83151186 AACTAAATTAAATT
1 AATTAAATTAAATT
83151200 AATACCTAGG
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
19 28 0.58
20 4 0.08
21 16 0.33
ACGTcount: A:0.62, C:0.01, G:0.00, T:0.36
Consensus pattern (19 bp):
AATTAAATTAAATTTAAAT
Found at i:83153121 original size:41 final size:42
Alignment explanation
Indices: 83153076--83153158 Score: 141
Period size: 41 Copynumber: 2.0 Consensus size: 42
83153066 ATCAAATCCA
83153076 AGAACAATCATGAATTCATTCTCTCACC-TACATATTCTTTT
1 AGAACAATCATGAATTCATTCTCTCACCATACATATTCTTTT
83153117 AGAACAATCATGAATTCATTCTCTCACCAATTACATATTCTT
1 AGAACAATCATGAATTCATTCTCTCACC-A-TACATATTCTT
83153159 GCAAAAAAGA
Statistics
Matches: 39, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
41 28 0.72
44 11 0.28
ACGTcount: A:0.34, C:0.24, G:0.05, T:0.37
Consensus pattern (42 bp):
AGAACAATCATGAATTCATTCTCTCACCATACATATTCTTTT
Found at i:83158922 original size:40 final size:39
Alignment explanation
Indices: 83158812--83158925 Score: 140
Period size: 38 Copynumber: 2.9 Consensus size: 39
83158802 ATTTGATGTG
* * *
83158812 TATCTGGGCTTAAAGACCCGTAGGCTTCGTGCTGGTATTA
1 TATCT-GGCTTAAAGTCCCGCAGGCTTAGTGCTGGTATTA
* *
83158852 TATCTGGGTTAAA-TCCCGCAGGCCTAGTGCTGGTATTA
1 TATCTGGCTTAAAGTCCCGCAGGCTTAGTGCTGGTATTA
* *
83158890 TATCTGAGCTTAAAGTCCCGCAGGTTTTGTGCTGGT
1 TATCTG-GCTTAAAGTCCCGCAGGCTTAGTGCTGGT
83158926 GACTAGATTC
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
38 27 0.43
39 13 0.21
40 23 0.37
ACGTcount: A:0.19, C:0.20, G:0.27, T:0.33
Consensus pattern (39 bp):
TATCTGGCTTAAAGTCCCGCAGGCTTAGTGCTGGTATTA
Found at i:83166591 original size:38 final size:38
Alignment explanation
Indices: 83166510--83166601 Score: 114
Period size: 38 Copynumber: 2.4 Consensus size: 38
83166500 CGCAGGCTAT
* * * *
83166510 ATGCTGGAAATATATCTGGGTTAAATCTCACAAGCTTC
1 ATGCTGGTATTATATCCGGGTTAAATCTCACAAGCCTC
* *
83166548 ATGCTGGTATTATATCCGGGTTAAATCTCGCAGGCCT-
1 ATGCTGGTATTATATCCGGGTTAAATCTCACAAGCCTC
83166585 AGTGCTGGTATTATATC
1 A-TGCTGGTATTATATC
83166602 TGAGCTTAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
37 1 0.02
38 46 0.98
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.34
Consensus pattern (38 bp):
ATGCTGGTATTATATCCGGGTTAAATCTCACAAGCCTC
Found at i:83170049 original size:46 final size:46
Alignment explanation
Indices: 83169996--83170124 Score: 224
Period size: 46 Copynumber: 2.8 Consensus size: 46
83169986 TATTTGGGCA
*
83169996 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
83170042 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
83170088 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
83170125 GCGGGTTACA
Statistics
Matches: 80, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
45 1 0.01
46 79 0.99
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:83170980 original size:7 final size:8
Alignment explanation
Indices: 83170964--83170988 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
83170954 GTGAGTGAAG
83170964 AAAAGAAA
1 AAAAGAAA
83170972 AAAAGAAA
1 AAAAGAAA
83170980 AAAAGAAA
1 AAAAGAAA
83170988 A
1 A
83170989 TTTGTTCATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (8 bp):
AAAAGAAA
Found at i:83172323 original size:40 final size:40
Alignment explanation
Indices: 83172229--83172373 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
83172219 TACTCGAATG
*
83172229 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
83172270 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
83172310 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
83172350 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
83172374 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:83176542 original size:40 final size:40
Alignment explanation
Indices: 83176448--83176592 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
83176438 TACTCGAATG
*
83176448 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
83176489 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
83176529 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
83176569 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
83176593 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:83180607 original size:15 final size:15
Alignment explanation
Indices: 83180570--83180647 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
83180560 GTATCTTGGG
83180570 TTTCTTTA-TCTGGA
1 TTTCTTTATTCTGGA
*
83180584 TCT-TTTATTCTGGA
1 TTTCTTTATTCTGGA
*
83180598 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
83180613 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
83180628 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
83180642 TTTCTT
1 TTTCTT
83180648 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
13 4 0.08
14 20 0.38
15 27 0.51
16 2 0.04
ACGTcount: A:0.10, C:0.15, G:0.14, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:83183090 original size:46 final size:46
Alignment explanation
Indices: 83183034--83183159 Score: 207
Period size: 46 Copynumber: 2.7 Consensus size: 46
83183024 TTGGGCATCT
***
83183034 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCC
*
83183080 GAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCC
*
83183126 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
83183160 GCGGGTTACA
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCC
Found at i:83187499 original size:23 final size:23
Alignment explanation
Indices: 83187469--83187547 Score: 88
Period size: 23 Copynumber: 3.4 Consensus size: 23
83187459 GCTGATGGAT
*
83187469 AGTAAGCTCTATTGAGCTGACAC
1 AGTAAGCTCTATTGAGCTGAAAC
***
83187492 AGTAAGCTCTAACAAGCTGAAAAC
1 AGTAAGCTCTATTGAGCTG-AAAC
*
83187516 AATAAGCTCT-TATGAGCTGAAAC
1 AGTAAGCTCTAT-TGAGCTGAAAC
83187539 AGTAAGCTC
1 AGTAAGCTC
83187548 CAACGAGCTA
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
23 28 0.62
24 17 0.38
ACGTcount: A:0.38, C:0.20, G:0.19, T:0.23
Consensus pattern (23 bp):
AGTAAGCTCTATTGAGCTGAAAC
Found at i:83187525 original size:24 final size:24
Alignment explanation
Indices: 83187469--83187582 Score: 106
Period size: 24 Copynumber: 4.8 Consensus size: 24
83187459 GCTGATGGAT
** *
83187469 AGTAAGCTCTATTGAGCTG-ACAC
1 AGTAAGCTCTAACGAGCTGAAAAC
*
83187492 AGTAAGCTCTAACAAGCTGAAAAC
1 AGTAAGCTCTAACGAGCTGAAAAC
* * *
83187516 AATAAGCTCTTATGAGCTG-AAAC
1 AGTAAGCTCTAACGAGCTGAAAAC
* * *
83187539 AGTAAGCTCCAACGAGCTAAAAAT
1 AGTAAGCTCTAACGAGCTGAAAAC
* *
83187563 AGTAAGCTCTTACGAACTGA
1 AGTAAGCTCTAACGAGCTGA
83187583 TATATCGGTA
Statistics
Matches: 71, Mismatches: 18, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
23 34 0.48
24 37 0.52
ACGTcount: A:0.39, C:0.20, G:0.18, T:0.22
Consensus pattern (24 bp):
AGTAAGCTCTAACGAGCTGAAAAC
Found at i:83187532 original size:47 final size:48
Alignment explanation
Indices: 83187471--83187574 Score: 140
Period size: 47 Copynumber: 2.2 Consensus size: 48
83187461 TGATGGATAG
* * *
83187471 TAAGCTC-TATTGAGCTGACACAGTAAGCTCTAACAAGCTGAAAACAA
1 TAAGCTCTTATTGAGCTGAAACAGTAAGCTCCAACAAGCTAAAAACAA
* * *
83187518 TAAGCTCTTA-TGAGCTGAAACAGTAAGCTCCAACGAGCTAAAAATAG
1 TAAGCTCTTATTGAGCTGAAACAGTAAGCTCCAACAAGCTAAAAACAA
83187565 TAAGCTCTTA
1 TAAGCTCTTA
83187575 CGAACTGATA
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
47 48 0.96
48 2 0.04
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.23
Consensus pattern (48 bp):
TAAGCTCTTATTGAGCTGAAACAGTAAGCTCCAACAAGCTAAAAACAA
Found at i:83194449 original size:40 final size:40
Alignment explanation
Indices: 83194211--83194454 Score: 332
Period size: 40 Copynumber: 6.1 Consensus size: 40
83194201 CAGATGATAA
* * *
83194211 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
83194251 CCGGGCTAAGTCCCGAGGGCATTTGTGTGAGTTACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
83194291 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTGAT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAT
* *
83194331 CCAGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
**
83194371 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* **
83194411 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
83194451 CCGG
1 CCGG
83194455 TTAAAGCCCG
Statistics
Matches: 183, Mismatches: 18, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
39 2 0.01
40 180 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:83202687 original size:40 final size:40
Alignment explanation
Indices: 83202484--83202675 Score: 305
Period size: 40 Copynumber: 4.8 Consensus size: 40
83202474 CGGATGATAA
* * * *
83202484 CCGGACTAAGTCCCGAAGGCATTTGCGCTAGTGACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
*
83202524 CCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
83202564 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
83202604 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-T
* *
83202644 CCGGGCTAAGTCCCAAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
83202676 GGCTATATCC
Statistics
Matches: 143, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
39 2 0.01
40 141 0.99
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
Found at i:83209154 original size:24 final size:24
Alignment explanation
Indices: 83209077--83209157 Score: 99
Period size: 24 Copynumber: 3.4 Consensus size: 24
83209067 GTAAGCTTTG
* *
83209077 ACGAGATGAAAAGAATAAGCTCCA
1 ACGAGTTGAAAACAATAAGCTCCA
* *
83209101 ACGAGCTAAAAACAATAAGCTCCA
1 ACGAGTTGAAAACAATAAGCTCCA
* **
83209125 ATGAGTTGAAAACAATAAGCTCTT
1 ACGAGTTGAAAACAATAAGCTCCA
83209149 ACGAGTTGA
1 ACGAGTTGA
83209158 TATATCTATA
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.46, C:0.17, G:0.19, T:0.19
Consensus pattern (24 bp):
ACGAGTTGAAAACAATAAGCTCCA
Found at i:83210903 original size:40 final size:39
Alignment explanation
Indices: 83210859--83210989 Score: 113
Period size: 40 Copynumber: 3.3 Consensus size: 39
83210849 GTACTTGTGG
* * *
83210859 CTTGTCCATAATACTG-ACAACTTTTCTGCAATTCTGGTGA
1 CTTGTCCACAATACTGTAC--CTTGTCTGCAATTATGGTGA
* *
83210899 CTTGTCCACAATACTAGTGCCTTGTCTGCAATTATGGTGG
1 CTTGTCCACAATACT-GTACCTTGTCTGCAATTATGGTGA
*** * *
83210939 CTTGTCCACAATACTGGTGGTTTATCTGCAA-TATTGGTGG
1 CTTGTCCACAATACT-GTACCTTGTCTGCAATTA-TGGTGA
83210979 CTTGTCCACAA
1 CTTGTCCACAA
83210990 ATTGGTGTGT
Statistics
Matches: 79, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
39 2 0.03
40 75 0.95
41 1 0.01
42 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (39 bp):
CTTGTCCACAATACTGTACCTTGTCTGCAATTATGGTGA
Found at i:83210910 original size:20 final size:20
Alignment explanation
Indices: 83210887--83210989 Score: 73
Period size: 20 Copynumber: 5.2 Consensus size: 20
83210877 AACTTTTCTG
*
83210887 CAATTCTGGTGACTTGTCCA
1 CAATACTGGTGACTTGTCCA
* * **
83210907 CAATACTAGTGCCTTGTCTG
1 CAATACTGGTGACTTGTCCA
*
83210927 CAATTA-TGGTGGCTTGTCCA
1 CAA-TACTGGTGACTTGTCCA
** * **
83210947 CAATACTGGTGGTTTATCTG
1 CAATACTGGTGACTTGTCCA
* *
83210967 CAATATTGGTGGCTTGTCCA
1 CAATACTGGTGACTTGTCCA
83210987 CAA
1 CAA
83210990 ATTGGTGTGT
Statistics
Matches: 63, Mismatches: 18, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
19 2 0.03
20 59 0.94
21 2 0.03
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.35
Consensus pattern (20 bp):
CAATACTGGTGACTTGTCCA
Found at i:83211957 original size:37 final size:37
Alignment explanation
Indices: 83211893--83211968 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
83211883 TTACAAGCCA
83211893 AAATCATTATAAGCCACATCTCATGGCTACAT-ACAAC
1 AAATCATTATAAGCCACATCTCATGGCTA-ATCACAAC
*
83211930 AAATCATTATAAGCCA-ATACAT-TTGGCTAATCACAAC
1 AAATCATTATAAGCCACAT-C-TCATGGCTAATCACAAC
83211967 AA
1 AA
83211969 CATCGATCAT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
36 4 0.11
37 30 0.86
38 1 0.03
ACGTcount: A:0.43, C:0.24, G:0.08, T:0.25
Consensus pattern (37 bp):
AAATCATTATAAGCCACATCTCATGGCTAATCACAAC
Found at i:83217949 original size:79 final size:81
Alignment explanation
Indices: 83217813--83217995 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
83217803 TCGAATGATG
* *
83217813 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
83217877 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
83217892 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
83217954 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* * *
83217972 ACCGGACTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
83217996 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:83218004 original size:40 final size:39
Alignment explanation
Indices: 83217814--83217997 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
83217804 CGAATGATGT
* * * *
83217814 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
83217854 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
83217894 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
83217932 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
83217973 CCGGACTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
83217998 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
39 35 0.28
40 80 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:83218019 original size:79 final size:79
Alignment explanation
Indices: 83217866--83218030 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
83217856 GGACTAAGAT
* * **
83217866 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGACTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
83217931 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
83217945 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGACTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGACTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
83218008 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
83218024 CCGAAGG
1 CCGAAGG
83218031 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGACTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:83225049 original size:10 final size:10
Alignment explanation
Indices: 83225034--83225063 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
83225024 AAGCGAATAA
83225034 ATATATATAC
1 ATATATATAC
83225044 ATATATATAC
1 ATATATATAC
*
83225054 ATATAAATAC
1 ATATATATAC
83225064 TTGTAAGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (10 bp):
ATATATATAC
Found at i:83240523 original size:47 final size:47
Alignment explanation
Indices: 83240454--83241087 Score: 1025
Period size: 47 Copynumber: 13.3 Consensus size: 47
83240444 CCCTTCGGGA
* * * * * *
83240454 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
83240501 CTTATCACATATATACAGTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83240548 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83240595 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83240642 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83240689 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83240738 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
83240785 CTTATCACATATATATACACTTTCACATTCACCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83240834 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83240881 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83240930 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83240977 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83241024 CTTATCACATATATATATACACATTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83241075 CTTATCACATATA
1 CTTATCACATATA
83241088 CTATCATGTA
Statistics
Matches: 556, Mismatches: 21, Indels: 20
0.93 0.04 0.03
Matches are distributed among these distances:
47 373 0.67
49 137 0.25
51 46 0.08
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:83240731 original size:96 final size:96
Alignment explanation
Indices: 83240454--83241087 Score: 1037
Period size: 96 Copynumber: 6.6 Consensus size: 96
83240444 CCCTTCGGGA
* * * * * *
83240454 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* * * *
83240517 AGTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCACCACATCGGCCATTAGGC
83240548 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
83240611 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCACCACATCGGCCATTAGGC
*
83240642 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
83240707 ACTTTCACATTCACCACATCGGCCATTAGGC
66 ACTTTCACATTCACCACATCGGCCATTAGGC
*
83240738 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
83240803 ACTTTCACATTCACCACATTGGCCATTAGGC
66 ACTTTCACATTCACCACATCGGCCATTAGGC
83240834 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
83240899 ACTTTCACATTCACCACATCGGCCATTAGGC
66 ACTTTCACATTCACCACATCGGCCATTAGGC
*
83240930 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
83240993 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCACCACATCGGCCATTAGGC
*
83241024 CTTATCACATATATATATACACATTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
83241088 CTATCATGTA
Statistics
Matches: 512, Mismatches: 20, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
94 185 0.36
96 279 0.54
98 45 0.09
100 3 0.01
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCACCACATCGGCCATTAGGC
Found at i:83240767 original size:143 final size:141
Alignment explanation
Indices: 83240454--83241087 Score: 1025
Period size: 143 Copynumber: 4.4 Consensus size: 141
83240444 CCCTTCGGGA
* * * * * * *
83240454 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCTTATCACATATATACAG
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* * *
83240519 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
83240584 GGCCATTAGGC
131 GGCCATTAGGC
83240595 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
83240660 TTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACA
66 TTTCACATTCACCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
83240725 TCGGCCATTAGGC
129 TCGGCCATTAGGC
*
83240738 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
83240803 ACTTTCACATTCACCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
83240868 TCGGCCATTAGGC
129 TCGGCCATTAGGC
*
83240881 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
83240946 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
83241011 TCGGCCATTAGGC
129 TCGGCCATTAGGC
*
83241024 CTTATCACATATATATATACACATTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
83241088 CTATCATGTA
Statistics
Matches: 464, Mismatches: 21, Indels: 12
0.93 0.04 0.02
Matches are distributed among these distances:
141 92 0.20
143 229 0.49
145 143 0.31
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:83247305 original size:20 final size:19
Alignment explanation
Indices: 83247265--83247307 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
83247255 AAACGTGATA
*
83247265 TTTTGAAAAAAAATTATTG
1 TTTTGAAAAAAAATTAGTG
83247284 TTTTGGAAAAGAAAATT-GTG
1 TTTT-GAAAA-AAAATTAGTG
83247304 TTTT
1 TTTT
83247308 ACTCCAGCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 4 0.19
20 11 0.52
21 6 0.29
ACGTcount: A:0.40, C:0.00, G:0.16, T:0.44
Consensus pattern (19 bp):
TTTTGAAAAAAAATTAGTG
Found at i:83247937 original size:44 final size:44
Alignment explanation
Indices: 83247866--83247956 Score: 121
Period size: 44 Copynumber: 2.1 Consensus size: 44
83247856 CAATAGGACA
* **
83247866 GCTCAACGCCATAGAAAGGACGGCTCAATGTTGTACACAGGATG
1 GCTCAACGCCATAGAAAGGACGACTCAATGTCATACACAGGATG
* *
83247910 GCTCAATGCCATAGACAA-GACGACTCAATGTCATAGACAGGATG
1 GCTCAACGCCATAGA-AAGGACGACTCAATGTCATACACAGGATG
83247954 GCT
1 GCT
83247957 AAAGGCCGTA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
44 39 0.95
45 2 0.05
ACGTcount: A:0.33, C:0.23, G:0.25, T:0.19
Consensus pattern (44 bp):
GCTCAACGCCATAGAAAGGACGACTCAATGTCATACACAGGATG
Found at i:83252074 original size:149 final size:150
Alignment explanation
Indices: 83251919--83252219 Score: 516
Period size: 149 Copynumber: 2.0 Consensus size: 150
83251909 TTACTTGCAA
* *
83251919 CCTTAATGACGCCACAACCACTAGACCACATGTTTCCTTGTATTATTTATTTACCACAATAATTT
1 CCTTAATGACGCCACAACCACTAGACCACATGCTTCATTGTATTATTTATTTACCACAATAATTT
83251984 AAAAGGCCTTCATCCAAGCACCTAG-GATTTTATT-ACTTAAAACCAAAATTTTTACTAAAGCCC
66 AAAAGGCCTTCATCCAAGCACCTAGCG-TTTTATTCACTTAAAACCAAAATTTTTACTAAAGCCC
*
83252047 AGGTTTGAACCCAATATTTCT
130 AGGTTTGAACCCAAGATTTCT
* *
83252068 CCTTAATGACGCCACAACCACTAGATCACATGCTTCATTGTGTTATTTATTTACCACAATAATTT
1 CCTTAATGACGCCACAACCACTAGACCACATGCTTCATTGTATTATTTATTTACCACAATAATTT
83252133 AAAAGGCCTTCATCCAAGCACCTAGCGTTTTATTCACTTAAAACCAAAATTTTTACTAAAGCCCA
66 AAAAGGCCTTCATCCAAGCACCTAGCGTTTTATTCACTTAAAACCAAAATTTTTACTAAAGCCCA
* *
83252198 TGTTTGAACTCAAGATTTCT
131 GGTTTGAACCCAAGATTTCT
83252218 CC
1 CC
83252220 AACACTTCCT
Statistics
Matches: 143, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
149 93 0.65
150 50 0.35
ACGTcount: A:0.33, C:0.25, G:0.10, T:0.33
Consensus pattern (150 bp):
CCTTAATGACGCCACAACCACTAGACCACATGCTTCATTGTATTATTTATTTACCACAATAATTT
AAAAGGCCTTCATCCAAGCACCTAGCGTTTTATTCACTTAAAACCAAAATTTTTACTAAAGCCCA
GGTTTGAACCCAAGATTTCT
Found at i:83254150 original size:22 final size:22
Alignment explanation
Indices: 83254118--83254197 Score: 70
Period size: 22 Copynumber: 3.6 Consensus size: 22
83254108 CCAAGTCAAT
83254118 AGGACGACTCAACGCCGTAGAC
1 AGGACGACTCAACGCCGTAGAC
* * *
83254140 AGGACGGCTCAATGCTGTAGAC
1 AGGACGACTCAACGCCGTAGAC
* * * * * *
83254162 ATGAGGGCTCAATGTCGTATAC
1 AGGACGACTCAACGCCGTAGAC
*
83254184 AGGATGACTCAACG
1 AGGACGACTCAACG
83254198 TTGTAGGTAA
Statistics
Matches: 46, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 46 1.00
ACGTcount: A:0.30, C:0.24, G:0.29, T:0.17
Consensus pattern (22 bp):
AGGACGACTCAACGCCGTAGAC
Found at i:83259970 original size:17 final size:16
Alignment explanation
Indices: 83259948--83259980 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
83259938 TATTTATTTA
83259948 TTATTTTATGTTTTATT
1 TTATTTTAT-TTTTATT
83259965 TTATTTTATTTTTATT
1 TTATTTTATTTTTATT
83259981 AAAACTACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (16 bp):
TTATTTTATTTTTATT
Found at i:83261326 original size:24 final size:24
Alignment explanation
Indices: 83261228--83261327 Score: 146
Period size: 24 Copynumber: 4.2 Consensus size: 24
83261218 AGTCTGTCAT
*
83261228 GAGAGGATTTAGGAGTTGATAGGG
1 GAGAGGATTTAGGAGTTGATAAGG
* *
83261252 GATAGGATTTAGGAGTTGAGAAGG
1 GAGAGGATTTAGGAGTTGATAAGG
* *
83261276 GATAGGATTTAGGAGCTGATAAGG
1 GAGAGGATTTAGGAGTTGATAAGG
*
83261300 GAGAGGATTTAGGAGTTGATTAGG
1 GAGAGGATTTAGGAGTTGATAAGG
83261324 GAGA
1 GAGA
83261328 ATAGTGTTGG
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 68 1.00
ACGTcount: A:0.32, C:0.01, G:0.42, T:0.25
Consensus pattern (24 bp):
GAGAGGATTTAGGAGTTGATAAGG
Found at i:83262730 original size:27 final size:26
Alignment explanation
Indices: 83262692--83262800 Score: 110
Period size: 27 Copynumber: 4.0 Consensus size: 26
83262682 AAGCGTCTTG
*
83262692 GTGGCTATGCCACAATTATCTGATCTA
1 GTGGCTCTGCCAC-ATTATCTGATCTA
* *
83262719 GTGGCTCTGCCACATATATCTGTTCTG
1 GTGGCTCTGCCACAT-TATCTGATCTA
* *
83262746 GTGGCTCTGCCACGATTATCTGTATTTG
1 GTGGCTCTGCCAC-ATTATCTG-ATCTA
* * *
83262774 GTGACTCTGTCACATTATCTGTTCTA
1 GTGGCTCTGCCACATTATCTGATCTA
83262800 G
1 G
83262801 CAGCCATGCT
Statistics
Matches: 69, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 5 0.07
27 48 0.70
28 16 0.23
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (26 bp):
GTGGCTCTGCCACATTATCTGATCTA
Found at i:83262793 original size:54 final size:54
Alignment explanation
Indices: 83262690--83262798 Score: 148
Period size: 54 Copynumber: 2.0 Consensus size: 54
83262680 GGAAGCGTCT
*
83262690 TGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTGTTC
1 TGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATATCTGTTC
* * * * *
83262744 TGGTGGCTCTGCCACGATTATCTGTATTTGGTGACTCTGTCACAT-TATCTGTTC
1 TGGTGGCTATGCCACAATTATCTG-ATCTAGTGACTCTGCCACATATATCTGTTC
83262798 T
1 T
83262799 AGCAGCCATG
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
54 32 0.67
55 16 0.33
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.39
Consensus pattern (54 bp):
TGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATATCTGTTC
Found at i:83271220 original size:47 final size:47
Alignment explanation
Indices: 83271148--83271600 Score: 717
Period size: 47 Copynumber: 9.6 Consensus size: 47
83271138 GATAATTGTG
* *
83271148 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
83271195 ATGTAAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
83271242 ATGTGAAAGTGTATATATGTGATAAGGCCAAATGACCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
83271289 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
83271338 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
83271385 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
83271432 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
83271481 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
83271528 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
83271575 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
83271601 TCCCGAAGGG
Statistics
Matches: 376, Mismatches: 26, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
47 286 0.76
49 90 0.24
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:83271255 original size:96 final size:94
Alignment explanation
Indices: 83271148--83271600 Score: 717
Period size: 96 Copynumber: 4.8 Consensus size: 94
83271138 GATAATTGTG
* * *
83271148 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTAAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
83271213 GTGATAAGGCCTAATGGCCGATGTGATGA
66 GTGATAAGGCCTAATGGCCGATGTGATGA
* * *
83271242 ATGTGAAAGTGTATATATGTGATAAGGCCAAATGACCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
83271307 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
83271338 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
83271403 GTGATGAGGCCTAATGGCCGATGTGATGA
66 GTGATAAGGCCTAATGGCCGATGTGATGA
83271432 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
83271497 ATGTGATAAGGCCTAATAGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * * *
83271528 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
83271593 GTGATAAG
66 GTGATAAG
83271601 TCCCGAAGGG
Statistics
Matches: 333, Mismatches: 22, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
94 152 0.46
96 181 0.54
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (94 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:83271311 original size:143 final size:143
Alignment explanation
Indices: 83271148--83271600 Score: 770
Period size: 143 Copynumber: 3.2 Consensus size: 143
83271138 GATAATTGTG
*
83271148 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTAAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
83271211 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAATG
66 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAATG
*
83271276 ACCAATGTGATGA
131 GCCAATGTGATGA
83271289 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
83271354 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATG
66 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAATG
*
83271419 GCCGATGTGATGA
131 GCCAATGTGATGA
83271432 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * *
83271497 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTG
66 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAATG
* *
83271562 GCCAACGTGATGG
131 GCCAATGTGATGA
83271575 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
83271601 TCCCGAAGGG
Statistics
Matches: 296, Mismatches: 14, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
141 15 0.05
142 3 0.01
143 278 0.94
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (143 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAATG
GCCAATGTGATGA
Found at i:83273561 original size:24 final size:24
Alignment explanation
Indices: 83273463--83273562 Score: 146
Period size: 24 Copynumber: 4.2 Consensus size: 24
83273453 AGTCTGTCAT
*
83273463 GAGAGGATTTAGGAGTTGATAAGG
1 GAGAGGATTTAGGAGCTGATAAGG
* *
83273487 GATAGGATTTAGGAGTTGATAAGG
1 GAGAGGATTTAGGAGCTGATAAGG
* *
83273511 GATAGGATTTAGGAGCTAATAAGG
1 GAGAGGATTTAGGAGCTGATAAGG
*
83273535 GAGAGGATTTAGGAGCTGATTAGG
1 GAGAGGATTTAGGAGCTGATAAGG
83273559 GAGA
1 GAGA
83273563 ACAGTGTTGG
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 70 1.00
ACGTcount: A:0.34, C:0.02, G:0.39, T:0.25
Consensus pattern (24 bp):
GAGAGGATTTAGGAGCTGATAAGG
Found at i:83274539 original size:8 final size:8
Alignment explanation
Indices: 83274526--83274556 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
83274516 TTAGATCGGC
83274526 AAAAGCCG
1 AAAAGCCG
83274534 AAAAGCCG
1 AAAAGCCG
*
83274542 AAATGCCG
1 AAAAGCCG
83274550 AAAAGCC
1 AAAAGCC
83274557 TATTTTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.48, C:0.26, G:0.23, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:83275017 original size:27 final size:26
Alignment explanation
Indices: 83274975--83275086 Score: 107
Period size: 27 Copynumber: 4.2 Consensus size: 26
83274965 AGGAAGCGTC
* *
83274975 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTACCAC-ATTATCTGAT
* *
83275002 CTGGTGGCTCTACCACATATATTTGTT
1 CTGGTGGCTCTACCACAT-TATCTGAT
*
83275029 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTACCAC-ATTATCTG-AT
* * * *
83275057 CTGGTGACTCTATCACGTTATCTGTT
1 CTGGTGGCTCTACCACATTATCTGAT
83275083 CTGG
1 CTGG
83275087 CAGCCATGCT
Statistics
Matches: 70, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
26 7 0.10
27 47 0.67
28 16 0.23
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTACCACATTATCTGAT
Found at i:83275083 original size:54 final size:54
Alignment explanation
Indices: 83274975--83275086 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
83274965 AGGAAGCGTC
* *
83274975 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATTTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATATATCTGTT
* * * *
83275029 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTATCACGT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTACCACATATATCTGTT
83275083 CTGG
1 CTGG
83275087 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATATATCTGTT
Found at i:83282214 original size:93 final size:93
Alignment explanation
Indices: 83282055--83282225 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
83282045 GCCCCTAAGT
* * * *
83282055 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACACAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTAGGACTCAACTCAA
83282120 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
83282148 GAACTCGGACACAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTAGGACTCAACTCAA
1 GAACTCGGACACAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTAGGACTCAACTCAA
83282213 CGAGTTCGGATGC
66 CGAGTTCGGATGC
83282226 GCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACACAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTAGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:83282222 original size:46 final size:46
Alignment explanation
Indices: 83282050--83282222 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
83282040 AACCCGCCCC
* * *
83282050 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
83282096 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* * *
83282144 TCA-CGAACTCGGACACAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
83282189 TAAGTGAACTAGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
83282223 TGCGCAACCA
Statistics
Matches: 104, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 59 0.57
47 28 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:83285217 original size:93 final size:93
Alignment explanation
Indices: 83285110--83285280 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
83285100 GCCCCTAAGT
* * *
83285110 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83285175 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
83285203 GAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
83285268 CGAGTTCGGATGC
66 CGAGTTCGGATGC
83285281 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:83285277 original size:46 final size:46
Alignment explanation
Indices: 83285105--83285277 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
83285095 AACCCGCCCC
* * *
83285105 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
83285151 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* * *
83285199 TCA-CGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
83285244 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
83285278 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 60 0.57
47 28 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:83285730 original size:29 final size:30
Alignment explanation
Indices: 83285698--83285756 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
83285688 ATTTAATACG
83285698 AACTTTGGAAAAATTACACTTTT-CCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
83285727 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
83285757 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 20 0.77
30 6 0.23
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:83291061 original size:39 final size:40
Alignment explanation
Indices: 83290911--83291063 Score: 206
Period size: 39 Copynumber: 3.9 Consensus size: 40
83290901 CTCGTTCAAG
* * * *
83290911 TGCCTTCGGGACAT-AGCCGGTTTTAGTAACTCACAC-AA
1 TGCCTTCGGGACATAACCCGGATTTAATAACTCGCACGAA
*
83290949 TGCCTTCGGGACATAACCCGGATTTAACAACTCGCACGAA
1 TGCCTTCGGGACATAACCCGGATTTAATAACTCGCACGAA
*
83290989 TGCCTTC-GGACTTAACCCGGATTTAATAACTCGCACGAA
1 TGCCTTCGGGACATAACCCGGATTTAATAACTCGCACGAA
* *
83291028 TGCCTTCGGGAC-TAACCCGGATTTAGTATCTCGCAC
1 TGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
83291064 AAAGGCTTCG
Statistics
Matches: 103, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
38 14 0.14
39 76 0.74
40 13 0.13
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGACATAACCCGGATTTAATAACTCGCACGAA
Found at i:83291088 original size:78 final size:78
Alignment explanation
Indices: 83290927--83291080 Score: 204
Period size: 78 Copynumber: 2.0 Consensus size: 78
83290917 CGGGACATAG
* * *
83290927 CCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACGAATGC
1 CCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACGAAAGC
83290992 CTTCGGACTTAAC
66 CTTCGGACTTAAC
* ** *
83291005 CCGGATTTAATAACTCGCACGAATGCCTTCGGGAC-TAACCCGGATTTAGTATCTCGCAC-AAAG
1 CCGGATTTAATAACTCACAC-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACGAAAG
*
83291068 GCTTCGGATCTTA
65 CCTTCGGA-CTTA
83291081 GTCCGGATAT
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
77 10 0.15
78 42 0.64
79 14 0.21
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.25
Consensus pattern (78 bp):
CCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACGAAAGC
CTTCGGACTTAAC
Found at i:83291111 original size:78 final size:78
Alignment explanation
Indices: 83290944--83291114 Score: 193
Period size: 78 Copynumber: 2.2 Consensus size: 78
83290934 TAGTAACTCA
*
83290944 CACAATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACGAATGCCTTCGGACTTAACCCGG
1 CACAATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACGAAAGCCTTCGGACTTAACCCGG
* *
83291009 ATTTAATAACTCG
66 ATATAATAACTAG
** * * **
83291022 CACGAATGCCTTCGGGAC-TAACCCGGATTTAGTATCTCGCAC-AAAGGCTTCGGATCTTAGTCC
1 CAC-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACGAAAGCCTTCGGA-CTTAACCC
* *
83291085 GGATATATTCACTTAG
64 GGATATAATAAC-TAG
*
83291101 CACAAAGCCTTCGG
1 CACAATGCCTTCGG
83291115 ACTTAGCCCG
Statistics
Matches: 78, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
77 10 0.13
78 49 0.63
79 19 0.24
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (78 bp):
CACAATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACGAAAGCCTTCGGACTTAACCCGG
ATATAATAACTAG
Found at i:83291135 original size:40 final size:40
Alignment explanation
Indices: 83291060--83291135 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
83291050 TTAGTATCTC
* * * *
83291060 GCACAAAGGCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGCCTTCGGATCTTAGCCCGGACACATTCACTTA
83291100 GCACAAAGCCTTCGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGCCTTCGGATCTTAGCCCGGACA-CATTCA
83291136 ATTAATCATG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
39 11 0.35
40 20 0.65
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAAGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:83298954 original size:40 final size:40
Alignment explanation
Indices: 83298772--83298994 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
83298762 TCCTCGTTCA
* * * * *
83298772 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
83298811 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
83298851 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
83298891 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
83298931 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
83298971 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
83298995 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:83299003 original size:41 final size:41
Alignment explanation
Indices: 83298926--83299003 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
83298916 TTAGTATCTC
* * *
83298926 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
83298967 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
83299004 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:83303090 original size:40 final size:40
Alignment explanation
Indices: 83303013--83303096 Score: 125
Period size: 40 Copynumber: 2.1 Consensus size: 40
83303003 CTAACGGGGT
**
83303013 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGGC
1 TAAGTCCCGAAGACATTTGTGCTAGTGACGAATTCCGGGC
*
83303053 TAAGTCCCGAAGGCATTTGTGCTAGTGACG-ATATCCGGGC
1 TAAGTCCCGAAGACATTTGTGCTAGTGACGAAT-TCCGGGC
83303093 TAAG
1 TAAG
83303097 ACCCAACGGC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
39 2 0.05
40 38 0.95
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGACATTTGTGCTAGTGACGAATTCCGGGC
Done.