Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 251 of 349
Found at i:83307600 original size:17 final size:17
Alignment explanation
Indices: 83307574--83307609 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
83307564 GGCGTTTGCT
*
83307574 TGAGTTATAGAAGCTAA
1 TGAGTGATAGAAGCTAA
83307591 TGAGTGATAGAAGCTAA
1 TGAGTGATAGAAGCTAA
83307608 TG
1 TG
83307610 GAGAGGATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.39, C:0.06, G:0.28, T:0.28
Consensus pattern (17 bp):
TGAGTGATAGAAGCTAA
Found at i:83308532 original size:40 final size:40
Alignment explanation
Indices: 83308438--83308660 Score: 303
Period size: 40 Copynumber: 5.7 Consensus size: 40
83308428 CTAATGGGGT
* * * *
83308438 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGG-
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
83308477 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
83308517 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
83308557 TAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* * *
83308597 TAAGTCCCGAAGGCA-TTGTGCTAGTGAC-CATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* * *
83308636 TAAGACCCGACGGC-CTTGTGCGAGT
1 TAAGTCCCGAAGGCATTTGTGCGAGT
83308661 GGTTATATCC
Statistics
Matches: 171, Mismatches: 9, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
39 79 0.46
40 92 0.54
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
Found at i:83308587 original size:80 final size:80
Alignment explanation
Indices: 83308438--83308685 Score: 328
Period size: 79 Copynumber: 3.1 Consensus size: 80
83308428 CTAATGGGGT
* *
83308438 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGG-TAAGTCCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
83308502 TTACTA-ATTCCGGGC
66 TTACTATA-TCCGGGC
* *
83308517 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
83308582 TTACTATATCCGGGC
66 TTACTATATCCGGGC
* * * *
83308597 TAAGTCCCGAAGGCA-TTGTGCTAGTGAC-CATATCCGGGCTAAGACCCGACGGC-CTTGTGCGA
1 TAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA
***
83308659 GTGGTTATATCC-GGC
65 GTTACTATATCCGGGC
*
83308674 TAAATCCCGAAG
1 TAAGTCCCGAAG
83308686 ATAATTGGGT
Statistics
Matches: 152, Mismatches: 14, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
77 14 0.09
78 19 0.12
79 65 0.43
80 53 0.35
81 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
TAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
TTACTATATCCGGGC
Found at i:83308669 original size:39 final size:40
Alignment explanation
Indices: 83308438--83308685 Score: 294
Period size: 40 Copynumber: 6.3 Consensus size: 40
83308428 CTAATGGGGT
* * *
83308438 TAAGTCCCGAAGACATTTGTGCTAGTGATTA-ATTCCGGG-
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-TCCGGGC
*
83308477 TAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-TCCGGGC
*
83308517 TAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-TCCGGGC
*
83308557 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGC
* *
83308597 TAAGTCCCGAAGGCA-TTGTGCTAGTGACCATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGC
* * * **
83308636 TAAGACCCGACGGC-CTTGTGCGAGTGGTTATATCC-GGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGC
*
83308674 TAAATCCCGAAG
1 TAAGTCCCGAAG
83308686 ATAATTGGGT
Statistics
Matches: 190, Mismatches: 16, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
38 12 0.06
39 84 0.44
40 93 0.49
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGC
Found at i:83313579 original size:15 final size:15
Alignment explanation
Indices: 83313540--83313580 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
83313530 ACAGGCACTG
*
83313540 ATTCAACTTACTTATC
1 ATTC-ACTTTCTTATC
83313556 ATTCACTTTCTTATC
1 ATTCACTTTCTTATC
83313571 ATTCACTTTC
1 ATTCACTTTC
83313581 GAGTCTAACA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 20 0.83
16 4 0.17
ACGTcount: A:0.24, C:0.27, G:0.00, T:0.49
Consensus pattern (15 bp):
ATTCACTTTCTTATC
Found at i:83316032 original size:46 final size:46
Alignment explanation
Indices: 83315982--83316157 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
83315972 TGGTTGAGCA
83315982 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
83316028 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
83316073 CATCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
83316121 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
83316158 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.58
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:83316138 original size:93 final size:93
Alignment explanation
Indices: 83315979--83316150 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
83315969 GGATGGTTGA
* * *
83315979 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
83316044 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
83316072 GCATCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
83316137 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
83316151 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:83319600 original size:42 final size:42
Alignment explanation
Indices: 83319530--83319681 Score: 135
Period size: 42 Copynumber: 3.5 Consensus size: 42
83319520 TCCCGGACGT
* * * * * *
83319530 GGTCTTACATGTAATTCAGTATCGATGCCTCTATCCCAGACAG
1 GGTCTTACATGAAACTCA-AATCGATGCCTATGTCCCAGACAC
* * *
83319573 GGTCTTATATGAAA-TCAAATACGATGCCTATGTCCCAAACAT
1 GGTCTTACATGAAACTCAAAT-CGATGCCTATGTCCCAGACAC
* * *
83319615 GGTCTTACACGTAAATCTCAAATCGAGGCCTGTGTCCCAGACAC
1 GGTCTTACATG-AAA-CTCAAATCGATGCCTATGTCCCAGACAC
*
83319659 GGTCTTACATGATATCTCAAATC
1 GGTCTTACATGA-AACTCAAATC
83319682 AATGTTAACG
Statistics
Matches: 89, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
41 2 0.02
42 29 0.33
43 24 0.27
44 28 0.31
45 6 0.07
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (42 bp):
GGTCTTACATGAAACTCAAATCGATGCCTATGTCCCAGACAC
Found at i:83319653 original size:44 final size:43
Alignment explanation
Indices: 83319587--83319681 Score: 118
Period size: 44 Copynumber: 2.2 Consensus size: 43
83319577 TTATATGAAA
* *
83319587 TCAAATACGATGCCTATGTCCCAAACATGGTCTTACACGTAAATC
1 TCAAAT-CGAGGCCTATGTCCCAAACACGGTCTTACACG-AAATC
* * * *
83319632 TCAAATCGAGGCCTGTGTCCCAGACACGGTCTTACATGATATC
1 TCAAATCGAGGCCTATGTCCCAAACACGGTCTTACACGAAATC
83319675 TCAAATC
1 TCAAATC
83319682 AATGTTAACG
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
43 11 0.25
44 27 0.61
45 6 0.14
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (43 bp):
TCAAATCGAGGCCTATGTCCCAAACACGGTCTTACACGAAATC
Found at i:83328855 original size:56 final size:56
Alignment explanation
Indices: 83328769--83328944 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
83328759 ACAAGGGATG
*
83328769 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
83328825 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
83328881 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
83328937 ATGGGCAA
1 ATGGGCAA
83328945 TAAACTAATA
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:83330188 original size:39 final size:40
Alignment explanation
Indices: 83330080--83330264 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
83330070 TCGAATGATG
* * *
83330080 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
83330119 ATCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
83330160 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
83330199 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
83330238 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
83330265 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:83330286 original size:79 final size:79
Alignment explanation
Indices: 83330135--83330297 Score: 197
Period size: 79 Copynumber: 2.1 Consensus size: 79
83330125 ACTAAGATCT
* **
83330135 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAAT
1 GAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAAT
*
83330200 CCGGGTTAAGTCCC
66 CCGGGTTAAATCCC
* * *
83330214 GAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTA
1 GAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTA
* *
83330277 TATCC-GGTTAAATTCC
63 AATCCGGGTTAAATCCC
83330293 GAAGG
1 GAAGG
83330298 TACGTGATTT
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.64
80 24 0.33
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (79 bp):
GAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAAT
CCGGGTTAAATCCC
Found at i:83336846 original size:56 final size:56
Alignment explanation
Indices: 83336720--83336889 Score: 310
Period size: 56 Copynumber: 3.1 Consensus size: 56
83336710 AAGGGATGAT
*
83336720 GGCAAAACATGTCATGAAACATGTTGTGTT-ATGGAAAAAT-AAATAAGAAGCATG
1 GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGCATG
83336774 GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGCATG
1 GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGCATG
83336830 GGCAAAACATGTCATGAAACATGTTGTGTTAAT-GAAGAATAAAATAAGAAGCATG
1 GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGCATG
83336885 GGCAA
1 GGCAA
83336890 TAAACTAATA
Statistics
Matches: 113, Mismatches: 1, Indels: 3
0.97 0.01 0.03
Matches are distributed among these distances:
54 30 0.27
55 36 0.32
56 47 0.42
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGCATG
Found at i:83338139 original size:79 final size:81
Alignment explanation
Indices: 83338003--83338185 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
83337993 TCGAATGATG
* *
83338003 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
83338067 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
83338082 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
83338144 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
83338162 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
83338186 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:83338201 original size:40 final size:40
Alignment explanation
Indices: 83338004--83338187 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
83337994 CGAATGATGT
* * * *
83338004 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
83338044 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
83338084 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
83338122 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
83338163 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
83338188 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:83338209 original size:79 final size:79
Alignment explanation
Indices: 83338056--83338220 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
83338046 GGACTAAGAT
* **
83338056 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
83338121 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
83338135 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
83338198 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
83338214 CCGAAGG
1 CCGAAGG
83338221 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:83348667 original size:54 final size:56
Alignment explanation
Indices: 83348502--83348674 Score: 223
Period size: 56 Copynumber: 3.1 Consensus size: 56
83348492 GATGATGGGT
* *
83348502 GCAAGACATGTCAATGAAACCCTGTTGTGTTAATGGAAA-AAT-AAATAAGAAAGCA-GG
1 GCAAAACATGTC-ATGAAA-CATGTTGTGTTAATGGAAAGAATAAAAT-A-AAAGCATGG
*
83348559 GCAAAACATGTCATGAAACAATGTTGTGTTAATGG-AAGAATAAAAATAAGAGCATGG
1 GCAAAACATGTCATGAAAC-ATGTTGTGTTAATGGAAAGAAT-AAAATAAAAGCATGG
83348616 GCAAAAC-TGTCATGAAACATGTTGTG-TAATGGAAAGAATAAAATAAAAGCATGG
1 GCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAGAATAAAATAAAAGCATGG
83348670 GCAAA
1 GCAAA
83348675 TAAAACTAAT
Statistics
Matches: 106, Mismatches: 4, Indels: 15
0.85 0.03 0.12
Matches are distributed among these distances:
54 25 0.24
55 17 0.16
56 39 0.37
57 21 0.20
58 4 0.04
ACGTcount: A:0.46, C:0.10, G:0.23, T:0.21
Consensus pattern (56 bp):
GCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAGAATAAAATAAAAGCATGG
Found at i:83350039 original size:41 final size:43
Alignment explanation
Indices: 83349933--83350041 Score: 109
Period size: 41 Copynumber: 2.5 Consensus size: 43
83349923 CTAAGAATCT
*
83349933 GAAGGCATTTGGTGCGAGATACTAATATGCTCCGGGCCTAAAGCCC
1 GAAGGCA-TT-GTGCGAGTTACTAATATGC-CCGGGCCTAAAGCCC
* * *
83349979 GAAGGCGATGGTACG-GTTACTAA-ATG-CCGGG-TTAAAGTCCC
1 GAAGGC-ATTGTGCGAGTTACTAATATGCCCGGGCCTAAAG-CCC
83350020 GAAGGCATTGTGCGAGTTACTA
1 GAAGGCATTGTGCGAGTTACTA
83350042 TACACCGGGC
Statistics
Matches: 54, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
40 11 0.20
41 21 0.39
43 3 0.06
44 7 0.13
45 4 0.07
46 7 0.13
47 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (43 bp):
GAAGGCATTGTGCGAGTTACTAATATGCCCGGGCCTAAAGCCC
Found at i:83350050 original size:41 final size:41
Alignment explanation
Indices: 83349964--83350071 Score: 105
Period size: 41 Copynumber: 2.7 Consensus size: 41
83349954 CTAATATGCT
* * **
83349964 CCGGGCCTAAAG-CCCGAAGGCGATGGTACGGTTACTAAATG
1 CCGGG-CTAAAGTCCCGAAGGCAATTGTACGGTTACTAAACA
* * *
83350005 CCGGGTTAAAGTCCCGAAGGC-ATTGTGCGAGTTACTATACA
1 CCGGGCTAAAGTCCCGAAGGCAATTGTACG-GTTACTAAACA
*
83350046 CCGGGCT-ATGTCCCGAAGGCAATTGT
1 CCGGGCTAAAGTCCCGAAGGCAATTGT
83350072 TTGAAACGAT
Statistics
Matches: 56, Mismatches: 8, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
40 23 0.41
41 33 0.59
ACGTcount: A:0.25, C:0.24, G:0.30, T:0.21
Consensus pattern (41 bp):
CCGGGCTAAAGTCCCGAAGGCAATTGTACGGTTACTAAACA
Found at i:83357041 original size:60 final size:55
Alignment explanation
Indices: 83356953--83357129 Score: 214
Period size: 56 Copynumber: 3.1 Consensus size: 55
83356943 GGGATGAGGC
*
83356953 CAAAACATGTCATGAAACATGTTGTGTTATATGGCAAAATAAATAAGAAGCATGGG
1 CAAAACATGTCATGAAACATGTTGTGTTA-ATGGCAGAATAAATAAGAAGCATGGG
*
83357009 CAAAACAATGTCATTAGAAACATGCTTGTGTTAAATGGACCAGAATAACTAAGAAGCAT-GG
1 CAAAAC-ATGTCA-T-GAAACATG-TTGTGTT-AATGG--CAGAATAAATAAGAAGCATGGG
*
83357070 CAAAACATGTCATGAAACATTGTTGTGTTAATGAG-AGATTAAAATAAGAAGCATGGG
1 CAAAACATGTCATGAAACA-TGTTGTGTTAATG-GCAGAAT-AAATAAGAAGCATGGG
83357127 CAA
1 CAA
83357130 TAAACTAATA
Statistics
Matches: 106, Mismatches: 4, Indels: 21
0.81 0.03 0.16
Matches are distributed among these distances:
55 4 0.04
56 18 0.17
57 15 0.14
58 15 0.14
59 11 0.10
60 17 0.16
61 9 0.08
62 17 0.16
ACGTcount: A:0.43, C:0.12, G:0.21, T:0.24
Consensus pattern (55 bp):
CAAAACATGTCATGAAACATGTTGTGTTAATGGCAGAATAAATAAGAAGCATGGG
Found at i:83364804 original size:39 final size:40
Alignment explanation
Indices: 83364701--83364923 Score: 257
Period size: 39 Copynumber: 5.7 Consensus size: 40
83364691 TTGAATGATG
*
83364701 TCCGGGCTAAGT-CCGAAGGC-TTTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
83364739 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
*
83364780 TCCGGGCTAAG-CCCCAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
83364819 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
83364858 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
83364897 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
83364924 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 13, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
39 83 0.51
40 67 0.41
41 12 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:83364945 original size:79 final size:79
Alignment explanation
Indices: 83364701--83364956 Score: 208
Period size: 79 Copynumber: 3.3 Consensus size: 79
83364691 TTGAATGATG
* * * *
83364701 TCCGGGCTAAGT-CCGAAGGC-TTTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
83364762 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* * *
83364780 TCCGGGCTAAG-CCCCAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
83364844 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
*
83364858 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
83364921 TTGAACGAG-GAGCTATA
63 TTGAACGAGTGA-CTAAA
* *
83364938 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
83364957 TACGTGATTT
Statistics
Matches: 151, Mismatches: 16, Indels: 20
0.81 0.09 0.11
Matches are distributed among these distances:
77 1 0.01
78 37 0.25
79 75 0.50
80 37 0.25
81 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:83372953 original size:39 final size:40
Alignment explanation
Indices: 83372849--83373072 Score: 266
Period size: 40 Copynumber: 5.7 Consensus size: 40
83372839 TTGAATGATG
*
83372849 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
83372888 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
*
83372929 TCCGGGCTAAG-CCCCAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
83372968 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
83373007 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
83373046 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
83373073 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 13, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
39 73 0.45
40 76 0.47
41 13 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:83373095 original size:79 final size:79
Alignment explanation
Indices: 83372849--83373078 Score: 213
Period size: 79 Copynumber: 2.9 Consensus size: 79
83372839 TTGAATGATG
* * * *
83372849 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
83372911 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* * *
83372929 TCCGGGCTAAG-CCCCAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
83372993 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
*
83373007 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
83373070 TTGAACGAG
63 TTGAACGAG
83373079 GAGCTATAAC
Statistics
Matches: 130, Mismatches: 12, Indels: 16
0.82 0.08 0.10
Matches are distributed among these distances:
77 1 0.01
78 37 0.28
79 50 0.38
80 41 0.32
81 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:83373103 original size:79 final size:79
Alignment explanation
Indices: 83372849--83373105 Score: 192
Period size: 79 Copynumber: 3.3 Consensus size: 79
83372839 TTGAATGATG
* * * * *
83372849 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
83372911 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* * * *
83372929 TCCGGGCT-AAGCCCCAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
83372993 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
* *
83373007 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
83373070 TTGAACGAG-GAGCTATAA
63 TTGAACGAGTGA-CTA-AA
*
83373088 -CC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAATCCCGAAGG
83373106 TACGTGATTT
Statistics
Matches: 148, Mismatches: 19, Indels: 21
0.79 0.10 0.11
Matches are distributed among these distances:
77 1 0.01
78 34 0.23
79 67 0.45
80 43 0.29
81 3 0.02
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:83377217 original size:40 final size:40
Alignment explanation
Indices: 83377173--83377279 Score: 214
Period size: 40 Copynumber: 2.7 Consensus size: 40
83377163 CGATATATTA
83377173 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
83377213 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
83377253 TATATCCGGGTTAAATCCCGCAGGCTT
1 TATATCCGGGTTAAATCCCGCAGGCTT
83377280 AGCGCTAGTA
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 67 1.00
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.30
Consensus pattern (40 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATG
Found at i:83386783 original size:38 final size:38
Alignment explanation
Indices: 83386723--83386806 Score: 116
Period size: 38 Copynumber: 2.2 Consensus size: 38
83386713 ATTTGATGTG
* *
83386723 TATTCGGGTTAAATCCCGCAGG-CTTCGTGCTGGTATTA
1 TATTCGGGATAAATCCCGCAGGCCTAC-TGCTGGTATTA
* *
83386761 TATTTGGGATAAATCTCGCAGGCCTACTGCTGGTATTA
1 TATTCGGGATAAATCCCGCAGGCCTACTGCTGGTATTA
83386799 TATTCGGG
1 TATTCGGG
83386807 CCTTCGTGCC
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
38 37 0.93
39 3 0.08
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.35
Consensus pattern (38 bp):
TATTCGGGATAAATCCCGCAGGCCTACTGCTGGTATTA
Found at i:83386847 original size:43 final size:43
Alignment explanation
Indices: 83386799--83387010 Score: 334
Period size: 43 Copynumber: 4.9 Consensus size: 43
83386789 GCTGGTATTA
*
83386799 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTACCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
83386842 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
** *
83386885 TATTTAGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
* *
83386928 TATTTCGGGCCTTCGTACCTAGCAGGCTTCGTGCCGGTGATGTG
1 TA-TTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
* * *
83386972 TATTCGGGCCTTCGTTCCTAGCAGGCGTAATGCCGGTGA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGA
83387011 AATGATATGT
Statistics
Matches: 157, Mismatches: 11, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
43 117 0.75
44 40 0.25
ACGTcount: A:0.13, C:0.24, G:0.33, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
Found at i:83387006 original size:87 final size:86
Alignment explanation
Indices: 83386799--83387010 Score: 334
Period size: 87 Copynumber: 2.5 Consensus size: 86
83386789 GCTGGTATTA
* *
83386799 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTACCGGTGATGTGTATTCGGGCCTTCGTGCCTAGC
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTACCTAGC
83386864 AGGCTTAGTGCCGGTGATGTG
66 AGGCTTAGTGCCGGTGATGTG
** *
83386885 TATTTAGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTTCGGGCCTTCGTACCTAG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTGTA-TTCGGGCCTTCGTACCTAG
*
83386950 CAGGCTTCGTGCCGGTGATGTG
65 CAGGCTTAGTGCCGGTGATGTG
* * *
83386972 TATTCGGGCCTTCGTTCCTAGCAGGCGTAATGCCGGTGA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGA
83387011 AATGATATGT
Statistics
Matches: 113, Mismatches: 12, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
86 41 0.36
87 72 0.64
ACGTcount: A:0.13, C:0.24, G:0.33, T:0.31
Consensus pattern (86 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTACCTAGC
AGGCTTAGTGCCGGTGATGTG
Found at i:83395288 original size:12 final size:12
Alignment explanation
Indices: 83395273--83395304 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
83395263 TATAGCATAC
*
83395273 GCTCTAGCAGGT
1 GCTCTAGCAGAT
83395285 GCTCTAGCAGAT
1 GCTCTAGCAGAT
83395297 GCTCTAGC
1 GCTCTAGC
83395305 TTCTGATCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.19, C:0.28, G:0.28, T:0.25
Consensus pattern (12 bp):
GCTCTAGCAGAT
Found at i:83400879 original size:30 final size:30
Alignment explanation
Indices: 83400831--83400889 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
83400821 TCATTAACTC
*
83400831 TAACTTTTACAAAATTACAATTTTGCCCCT
1 TAACTTTTACAAAATTACAATTTTCCCCCT
* * * *
83400861 TAACTTTTGCATATTTACACTTTTCCCCC
1 TAACTTTTACAAAATTACAATTTTCCCCC
83400890 AAAGCTCGAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.03, T:0.42
Consensus pattern (30 bp):
TAACTTTTACAAAATTACAATTTTCCCCCT
Found at i:83409276 original size:39 final size:40
Alignment explanation
Indices: 83409214--83409416 Score: 220
Period size: 39 Copynumber: 5.1 Consensus size: 40
83409204 TGGAATTTAA
** *
83409214 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
83409254 CCGG-TATAGTAACTCGCACAAATGCCTTCAGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
83409293 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
83409332 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
83409372 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
83409412 CCGGA
1 CCGGA
83409417 CATCATTCGA
Statistics
Matches: 137, Mismatches: 18, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
38 3 0.02
39 63 0.46
40 59 0.43
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:83409343 original size:79 final size:79
Alignment explanation
Indices: 83409235--83409416 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 79
83409225 TACTCGTTCA
* *
83409235 AATGCCTTCGGGACATAGCCCGGTATAGTAACTCGCACAAATGCCTTCAGGA-CTTAACCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGAT
* *
83409299 TTAGTAAC-TCGCACC
65 ATAGTAACTTAGCA-C
* **
83409314 AATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAA-TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
* *
83409378 ATGGTCACTTAGCAC
65 ATAGTAACTTAGCAC
*
83409393 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
83409417 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
78 13 0.15
79 61 0.69
80 15 0.17
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (79 bp):
AATGCCTTCGGGACTTAGCCCGGAATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATA
TAGTAACTTAGCAC
Found at i:83410666 original size:56 final size:56
Alignment explanation
Indices: 83410550--83410720 Score: 298
Period size: 56 Copynumber: 3.1 Consensus size: 56
83410540 TATTAGTTTA
83410550 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACAC-ACA--TTTCATGACA--TT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
83410601 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
83410657 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
83410713 TTGCCCAT
1 TTGCCCAT
83410721 CATCCCTTGT
Statistics
Matches: 114, Mismatches: 1, Indels: 5
0.95 0.01 0.04
Matches are distributed among these distances:
51 36 0.32
52 3 0.03
54 10 0.09
56 65 0.57
ACGTcount: A:0.23, C:0.24, G:0.08, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:83417186 original size:40 final size:40
Alignment explanation
Indices: 83417142--83417361 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
83417132 GCTCCTCGTT
* *
83417142 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
83417182 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
83417222 CAAATGCCTTCGGG-CTTAGCCCGGAT-TAGT-ACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
83417259 CAAATGCCTT-GGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * *
83417297 CAAATGCCTTC-GGATCTTAGTCCGGATAT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
83417337 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
83417362 CATCATTCAA
Statistics
Matches: 160, Mismatches: 11, Indels: 19
0.84 0.06 0.10
Matches are distributed among these distances:
36 14 0.09
37 21 0.13
38 22 0.14
39 30 0.19
40 72 0.45
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:83417295 original size:75 final size:78
Alignment explanation
Indices: 83417142--83417361 Score: 279
Period size: 75 Copynumber: 2.8 Consensus size: 78
83417132 GCTCCTCGTT
* * *
83417142 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
83417207 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
83417222 CAAATGCCTTCGGGCTTAGCCCGGATTAGT-ACTCGCACAAATGCCTT-GGG-CTTAGCCCGGAA
1 CAAATGCCTTCGGGCTTAGCCCGGATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
*
83417284 TTAGTATCTCGCA
66 TTAGTAACTCGCA
* * * *
83417297 CAAATGCCTTCGGATCTTAGTCCGGA-TATGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGGATTA-GTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
83417360 GA
63 GA
83417362 CATCATTCAA
Statistics
Matches: 126, Mismatches: 8, Indels: 13
0.86 0.05 0.09
Matches are distributed among these distances:
75 37 0.29
76 15 0.12
77 24 0.19
78 15 0.12
79 21 0.17
80 14 0.11
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:83417322 original size:115 final size:117
Alignment explanation
Indices: 83417142--83417361 Score: 290
Period size: 115 Copynumber: 1.9 Consensus size: 117
83417132 GCTCCTCGTT
*
83417142 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
83417207 ATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGATTAGTACTCGCA
66 ATAT-GTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGATTAGTACTCGCA
* * **
83417259 CAAATGCCTT-GGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
*
83417320 GGATATGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
83417362 CATCATTCAA
Statistics
Matches: 91, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
114 17 0.19
115 61 0.67
116 3 0.03
117 10 0.11
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (117 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGATTAGTACTCGCA
Found at i:83422008 original size:40 final size:38
Alignment explanation
Indices: 83421959--83422065 Score: 151
Period size: 40 Copynumber: 2.7 Consensus size: 38
83421949 TACTAGCTCA
* *
83421959 AAGCCTGCGGAACTTTAAGCCCGGATATAGTACCAGCACT
1 AAGCCTGCGGGA-TTTAA-CCCGGATATAGTACCAGCACG
*
83421999 AAGCCTGCGGGATTTAACCCGGATATGCATTACCAGCACG
1 AAGCCTGCGGGATTTAACCCGGATAT--AGTACCAGCACG
83422039 AAGCCTGCGGGATTTAACCCGGATATA
1 AAGCCTGCGGGATTTAACCCGGATATA
83422066 TAATATATCA
Statistics
Matches: 62, Mismatches: 3, Indels: 6
0.87 0.04 0.08
Matches are distributed among these distances:
38 10 0.16
39 5 0.08
40 47 0.76
ACGTcount: A:0.29, C:0.26, G:0.24, T:0.21
Consensus pattern (38 bp):
AAGCCTGCGGGATTTAACCCGGATATAGTACCAGCACG
Found at i:83425166 original size:40 final size:40
Alignment explanation
Indices: 83424968--83425152 Score: 343
Period size: 40 Copynumber: 4.6 Consensus size: 40
83424958 CGGATGATAA
83424968 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
83425008 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
83425048 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
83425088 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
83425128 CCGGGCTAAGTCCCGAATGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
83425153 AGTGAGTAGC
Statistics
Matches: 141, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 141 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:83431194 original size:40 final size:39
Alignment explanation
Indices: 83431150--83431343 Score: 253
Period size: 40 Copynumber: 4.9 Consensus size: 39
83431140 GGATATAGCT
* * * *
83431150 ACTCGCTCGAATGCCTTCGGGGCATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT-TAGTA
* *
83431190 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATTTGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTTAGTA
*
83431230 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTTAGTA
* *
83431270 ACTCGCACAAATGCCTCCGGGACTTAGCCCAGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GGTTTAGTA
* *
83431310 GCTCGCACAAATGCCTTCTGGACTTAGCCCGGTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT
83431344 ATCATCCGAA
Statistics
Matches: 139, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 3 0.02
40 133 0.96
41 3 0.02
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTTAGTA
Found at i:83438166 original size:53 final size:53
Alignment explanation
Indices: 83437995--83438190 Score: 167
Period size: 53 Copynumber: 3.6 Consensus size: 53
83437985 AGGATATCAA
* * * * * * * ** *
83437995 GTAAAACCATGCCAAGACATGACATTGGTAAGTTTTACAAGGCAAGGAAATAAT
1 GTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGCAAAGATACCAC
* * * * * * *
83438049 GTAAGACCATGTCAAGACATGGCATTGATAAACTACGATAAGGCAAAGATCCCAT
1 GTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGCAAAGATACCAC
** * *
83438104 GTAAGACCATGCCAAGGTATGGCAATGGTGAGTTCATAAGGCAAGGATACCAC
1 GTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAAGATACCAC
*
83438157 GTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 GTAAGACCATGCCAAGACATGGCAATGGTAAGTT
83438191 TAAAAAGGAA
Statistics
Matches: 112, Mismatches: 28, Indels: 5
0.77 0.19 0.03
Matches are distributed among these distances:
53 45 0.40
54 29 0.26
55 38 0.34
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.21
Consensus pattern (53 bp):
GTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAAGATACCAC
Found at i:83442270 original size:17 final size:18
Alignment explanation
Indices: 83442243--83442276 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
83442233 AATTAAATAT
83442243 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
83442261 ATGC-TATTAATTTATT
1 ATGCATATTAAATTATT
83442277 TAAACAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:83448729 original size:40 final size:41
Alignment explanation
Indices: 83448667--83448913 Score: 196
Period size: 40 Copynumber: 6.2 Consensus size: 41
83448657 CGGATGATAA
* **
83448667 CCGGTCTAAGTCCCG-AGAGCATTTAAGCTAGTGGCTAAT-T
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCTAGTGGCTAATAT
* * *
83448707 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCT-ACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGGCTAATAT
* * * *
83448747 CTGGGCTAAGTCTCGAAGGCGTTTGTGC--G-AGCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCTA--ATAT
* *
83448787 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT---TATTAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCTAATAT
* ** *
83448825 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCTAATAT
* *
83448866 CCGGGCTAAGTCCCAAAGGCATTTGAGCTAGTGGCT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCTAATAT
83448906 CC-GGCTAA
1 CCGGGCTAA
83448914 ACTCCGAAGG
Statistics
Matches: 169, Mismatches: 24, Indels: 29
0.76 0.11 0.13
Matches are distributed among these distances:
37 2 0.01
38 4 0.02
39 39 0.23
40 117 0.69
41 5 0.03
42 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (41 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCTAATAT
Found at i:83448872 original size:79 final size:80
Alignment explanation
Indices: 83448707--83448890 Score: 262
Period size: 79 Copynumber: 2.3 Consensus size: 80
83448697 GTGGCTAATT
* * * *
83448707 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCTGGGCTAAGTCTCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
* * *
83448772 TGCGAGCTATTATAT
66 TGCAAGCTACTATAA
* *
83448787 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
83448851 TGCAAGTTACTATAA
66 TGCAAGCTACTATAA
*
83448866 CCGGGCTAAGTCCCAAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
83448891 AGCTAGTGGC
Statistics
Matches: 93, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
79 57 0.61
80 36 0.39
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCAAGCTACTATAA
Found at i:83448912 original size:79 final size:78
Alignment explanation
Indices: 83448707--83448913 Score: 245
Period size: 79 Copynumber: 2.6 Consensus size: 78
83448697 GTGGCTAATT
* * * *
83448707 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCTGGGCTAAGTCTCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATC-CGGCTAAGTCCCGAAGGCATTTG
* * *
83448772 TGCGAGCTATTATAT
64 TGCAAGCTACTATAA
*
83448787 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCC-GGCTAAGTCCCGAAGGCATTTG
*
83448851 TGCAAGTTACTATAA
64 TGCAAGCTACTATAA
* * * *
83448866 CCGGGCTAAGTCCCAAAGGCATTTGAGCTAGTGGCTATATCCGGCTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATATCCGGCTAA
83448914 ACTCCGAAGG
Statistics
Matches: 109, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
79 70 0.64
80 38 0.35
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCCGGCTAAGTCCCGAAGGCATTTGTG
CAAGCTACTATAA
Found at i:83453352 original size:22 final size:22
Alignment explanation
Indices: 83453310--83453354 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
83453300 TTATTAACCC
*
83453310 AAATTAAATTGGATATAAATTA
1 AAATTAAATTAGATATAAATTA
*
83453332 AAATT-AATTAGATTATGAATTA
1 AAATTAAATTAGA-TATAAATTA
83453354 A
1 A
83453355 TACAGATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (22 bp):
AAATTAAATTAGATATAAATTA
Found at i:83454669 original size:2 final size:2
Alignment explanation
Indices: 83454662--83454701 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
83454652 ATCTCTTCAC
83454662 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
83454702 TTTATTCCAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:83456979 original size:40 final size:39
Alignment explanation
Indices: 83456935--83457159 Score: 308
Period size: 40 Copynumber: 5.7 Consensus size: 39
83456925 GCCACTAGCT
83456935 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
*
83456975 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
* *
83457014 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* *
83457054 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * ** *
83457094 CGAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
83457134 CAAATG-CTTCCGGGACTTAGCCCGGT
1 CAAATGCCTT-CGGGACTTAGCCCGGT
83457160 TATCATCCGA
Statistics
Matches: 169, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
39 42 0.25
40 127 0.75
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:83457034 original size:79 final size:78
Alignment explanation
Indices: 83456935--83457159 Score: 308
Period size: 79 Copynumber: 2.8 Consensus size: 78
83456925 GCCACTAGCT
83456935 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
83457000 TATAATAACTCGCA
65 TATAATAACTCGCA
* * *
83457014 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
* *
83457079 ATATAGTAGCTCGCA
65 -TATAATAACTCGCA
* * ** *
83457094 CGAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCACAAATG-CTTCCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTT-CGGGACTTAGCCCG
83457158 GT
64 GT
83457160 TATCATCCGA
Statistics
Matches: 129, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
79 66 0.51
80 63 0.49
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGT
ATAATAACTCGCA
Found at i:83465130 original size:39 final size:39
Alignment explanation
Indices: 83465086--83465292 Score: 240
Period size: 40 Copynumber: 5.2 Consensus size: 39
83465076 CCTTCGGAGT
* * *
83465086 TTAG-CCGGATATAGCCACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATA-ACACTCGCACAAATGCCTTCGGGAC
*
83465125 TTAGCCCGG-TATAATAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CACTCGCACAAATGCCTTCGGGAC
* *
83465164 TTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGAC
1 TTAGCCCGGATATAACA-CTCGCACAAATGCCTTCGGGAC
* *
83465204 TTAGCCCGGATATAATAGCTCGCACGAATGCCTTCGGGAC
1 TTAGCCCGGATATAACA-CTCGCACAAATGCCTTCGGGAC
* * *
83465244 TTAGCCCGGA-ATTAGCCACTAGCACAAATGCTTTCGGGAC
1 TTAGCCCGGATA-TA-ACACTCGCACAAATGCCTTCGGGAC
83465284 TTAGCCCGG
1 TTAGCCCGG
83465293 TTATCATCCG
Statistics
Matches: 149, Mismatches: 13, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
39 40 0.27
40 108 0.72
41 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (39 bp):
TTAGCCCGGATATAACACTCGCACAAATGCCTTCGGGAC
Found at i:83465189 original size:40 final size:40
Alignment explanation
Indices: 83465109--83465292 Score: 268
Period size: 40 Copynumber: 4.6 Consensus size: 40
83465099 GCCACTAGCT
*
83465109 CAAATGCCTTCGGGACTTAGCCCGG-TATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
83465148 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
*
83465188 CAAACGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
* *
83465228 CGAATGCCTTCGGGACTTAGCCCGGA-AT--TAGCCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAG---CTCGCA
*
83465268 CAAATGCTTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
83465293 TTATCATCCG
Statistics
Matches: 134, Mismatches: 7, Indels: 7
0.91 0.05 0.05
Matches are distributed among these distances:
37 3 0.02
39 27 0.20
40 104 0.78
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
Found at i:83467953 original size:52 final size:50
Alignment explanation
Indices: 83467854--83467954 Score: 132
Period size: 52 Copynumber: 2.0 Consensus size: 50
83467844 ATTAAGACAT
* *
83467854 CATGTTAGTTAAGTTTGCATCATAAATTATGACATGCACTATGTAACTCC
1 CATGTTAGTTAAGTTTGCATCATAAATTAAGACATGCACTAAGTAACTCC
* *
83467904 CATGTTAGTTAAAGTTTGCATCATTAAATTAAGTCATGTA-TAAAGTAACTC
1 CATGTTAGTT-AAGTTTGCATCA-TAAATTAAGACATGCACT-AAGTAACTC
83467955 ATTTGTTCAT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
50 10 0.23
51 13 0.30
52 21 0.48
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.37
Consensus pattern (50 bp):
CATGTTAGTTAAGTTTGCATCATAAATTAAGACATGCACTAAGTAACTCC
Found at i:83471368 original size:21 final size:21
Alignment explanation
Indices: 83471355--83471403 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
83471345 ATGATGAATC
83471355 CGGCTTCTAAGATGGATCAAT
1 CGGCTTCTAAGATGGATCAAT
*
83471376 CGGCTTCTGAGATGGATCAAT
1 CGGCTTCTAAGATGGATCAAT
83471397 CGGCTTC
1 CGGCTTC
83471404 CTTGGAATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (21 bp):
CGGCTTCTAAGATGGATCAAT
Found at i:83472483 original size:18 final size:18
Alignment explanation
Indices: 83472460--83472495 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
83472450 GCTAAACAAG
83472460 TTACATAACATAGACTAA
1 TTACATAACATAGACTAA
83472478 TTACATAACATAGACTAA
1 TTACATAACATAGACTAA
83472496 CTATTAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.17, G:0.06, T:0.28
Consensus pattern (18 bp):
TTACATAACATAGACTAA
Found at i:83484749 original size:48 final size:48
Alignment explanation
Indices: 83484682--83484909 Score: 193
Period size: 48 Copynumber: 4.9 Consensus size: 48
83484672 CACATGGTAG
* *
83484682 GATGCCAATGCCATATCCCAGATATGATCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGATCTTACATGGGATCACATATC
* * * ** **
83484730 AATGCCAATGTCATGTCCCAGACA-CAGTCTTACATGGGATCGTAGGTC
1 GATGCCAATGCCATGTCCCAGACATGA-TCTTACATGGGATCACATATC
* *
83484778 GATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGATCTTACATGGGATCACATATC
* * ** * *
83484826 GATGCCGAT---A-G-CCTC-G-CTATGGTCTTACATGAAATTACATACC
1 GATGCCAATGCCATGTCC-CAGAC-ATGATCTTACATGGGATCACATATC
* * *
83484869 GATGCCAAAGCCATGTCCTAGACATGGTCTTACATGGGATC
1 GATGCCAATGCCATGTCCCAGACATGATCTTACATGGGATC
83484910 GCACATAACC
Statistics
Matches: 139, Mismatches: 30, Indels: 22
0.73 0.16 0.12
Matches are distributed among these distances:
42 1 0.01
43 30 0.22
44 2 0.01
45 1 0.01
46 1 0.01
47 2 0.01
48 101 0.73
49 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGATCTTACATGGGATCACATATC
Found at i:83493473 original size:43 final size:43
Alignment explanation
Indices: 83493425--83493513 Score: 178
Period size: 43 Copynumber: 2.1 Consensus size: 43
83493415 TATCAACAAT
83493425 GGCATTTCATGAAATCTTTAACAGAAATAGAAATTCAGACATG
1 GGCATTTCATGAAATCTTTAACAGAAATAGAAATTCAGACATG
83493468 GGCATTTCATGAAATCTTTAACAGAAATAGAAATTCAGACATG
1 GGCATTTCATGAAATCTTTAACAGAAATAGAAATTCAGACATG
83493511 GGC
1 GGC
83493514 TTTGAAGAAC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.27
Consensus pattern (43 bp):
GGCATTTCATGAAATCTTTAACAGAAATAGAAATTCAGACATG
Found at i:83496223 original size:39 final size:39
Alignment explanation
Indices: 83496179--83496337 Score: 246
Period size: 39 Copynumber: 4.1 Consensus size: 39
83496169 ATTATATTAT
* * *
83496179 CAGCACAAAGCCTACGAGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTTC
*
83496218 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTTC
* *
83496257 CAGCACGAAGCCTACGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTTC
* *
83496296 CAGCACGAAGCCTGCGGGACTTTAGCCTGGATACATTTC
1 CAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTTC
83496335 CAG
1 CAG
83496338 TGTCTTGCAT
Statistics
Matches: 109, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 109 1.00
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.21
Consensus pattern (39 bp):
CAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTTC
Found at i:83505156 original size:24 final size:24
Alignment explanation
Indices: 83505129--83505209 Score: 69
Period size: 24 Copynumber: 3.2 Consensus size: 24
83505119 ATAAATGAAT
83505129 TAATTATTCAACATATTGAAATTG
1 TAATTATTCAACATATTGAAATTG
* *
83505153 TAATTAATTGACAAGGAATAAATG-AA-T-
1 TAATT-ATT--CAA--CAT-ATTGAAATTG
83505180 TAATTATTCAACATATTGAAATTG
1 TAATTATTCAACATATTGAAATTG
83505204 TAATTA
1 TAATTA
83505210 ATTGACACAG
Statistics
Matches: 44, Mismatches: 4, Indels: 18
0.67 0.06 0.27
Matches are distributed among these distances:
21 3 0.07
22 4 0.09
23 1 0.02
24 14 0.32
25 3 0.07
26 3 0.07
27 8 0.18
28 1 0.02
29 4 0.09
30 3 0.07
ACGTcount: A:0.46, C:0.06, G:0.10, T:0.38
Consensus pattern (24 bp):
TAATTATTCAACATATTGAAATTG
Found at i:83505169 original size:51 final size:51
Alignment explanation
Indices: 83505114--83505216 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
83505104 TATAAAATGT
83505114 AAGGAATAAATGAATTAATTATTCAACATATTGAAATTGTAATTAATTGAC
1 AAGGAATAAATGAATTAATTATTCAACATATTGAAATTGTAATTAATTGAC
83505165 AAGGAATAAATGAATTAATTATTCAACATATTGAAATTGTAATTAATTGAC
1 AAGGAATAAATGAATTAATTATTCAACATATTGAAATTGTAATTAATTGAC
83505216 A
1 A
83505217 CAGTGTGTTA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.48, C:0.06, G:0.12, T:0.35
Consensus pattern (51 bp):
AAGGAATAAATGAATTAATTATTCAACATATTGAAATTGTAATTAATTGAC
Found at i:83510268 original size:20 final size:20
Alignment explanation
Indices: 83510243--83510283 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
83510233 TATAGGTAGC
* *
83510243 AATTTTTCAATTGATTTTAA
1 AATTTTTCAATCGAGTTTAA
*
83510263 AATTTTTTAATCGAGTTTAA
1 AATTTTTCAATCGAGTTTAA
83510283 A
1 A
83510284 CAGTTTAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.37, C:0.05, G:0.07, T:0.51
Consensus pattern (20 bp):
AATTTTTCAATCGAGTTTAA
Found at i:83512304 original size:61 final size:61
Alignment explanation
Indices: 83512205--83512410 Score: 168
Period size: 61 Copynumber: 3.4 Consensus size: 61
83512195 ACTAGGAAAG
** ** *
83512205 GGAAAGCCTTTGTGGTGAGT-CTTAGATGTTAAGGAATGCCTTTATGACACAACTCTGGACA
1 GGAAAGCCTTTGTGGCAAGTAC-TAGATAATAAGAAATGCCTTTATGACACAACTCTGGACA
* * * * * * *
83512266 GGAAAGTCTTTTTGGTGAA-TACTAGATATTAATAAATGCCTTTGT-AGCACAACTTTGGACA
1 GGAAAGCCTTTGTGG-CAAGTACTAGATAATAAGAAATGCCTTTATGA-CACAACTCTGGACA
* * * * **
83512327 TGAAAGCCTTTGTGGCAAGTACTGGATAATAAGGAATGCCTTTATGGCACAACTCTAAAC-
1 GGAAAGCCTTTGTGGCAAGTACTAGATAATAAGAAATGCCTTTATGACACAACTCTGGACA
* *
83512387 GAGAAAGCCTTTATGGCGAGTACT
1 G-GAAAGCCTTTGTGGCAAGTACT
83512411 TAATGAAAAA
Statistics
Matches: 114, Mismatches: 25, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
60 3 0.03
61 109 0.96
62 2 0.02
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (61 bp):
GGAAAGCCTTTGTGGCAAGTACTAGATAATAAGAAATGCCTTTATGACACAACTCTGGACA
Found at i:83517712 original size:21 final size:21
Alignment explanation
Indices: 83517687--83517739 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
83517677 TTGCAAGCTC
**
83517687 ACACGCCCGTGTGGTCCAAGG
1 ACACGCCCGTGTGACCCAAGG
* * *
83517708 GCACGCCCTTGTGACCCTAGG
1 ACACGCCCGTGTGACCCAAGG
83517729 ACACGCCCGTG
1 ACACGCCCGTG
83517740 CTACTGCCTG
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.17, C:0.38, G:0.30, T:0.15
Consensus pattern (21 bp):
ACACGCCCGTGTGACCCAAGG
Found at i:83522543 original size:40 final size:40
Alignment explanation
Indices: 83522507--83522601 Score: 118
Period size: 40 Copynumber: 2.4 Consensus size: 40
83522497 CGGCTATTTG
83522507 TGGCACTTAGTGTGCAATTCGACATAGCTTCAGCTATATA
1 TGGCACTTAGTGTGCAATTCGACATAGCTTCAGCTATATA
* * * * * *
83522547 TGGCACTTAGTGTACGATTTGAGATAGCTTCGGCTATGTA
1 TGGCACTTAGTGTGCAATTCGACATAGCTTCAGCTATATA
* *
83522587 CGACACTTAGTGTGC
1 TGGCACTTAGTGTGC
83522602 GAGGCATTGA
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 46 1.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (40 bp):
TGGCACTTAGTGTGCAATTCGACATAGCTTCAGCTATATA
Found at i:83530280 original size:40 final size:40
Alignment explanation
Indices: 83530137--83530283 Score: 226
Period size: 40 Copynumber: 3.7 Consensus size: 40
83530127 TACTAGCTCA
* * *
83530137 AAGCCTGCGGAACTTTAAGCCCGG--ATACAATACCAGCACT
1 AAGCCTGCGGGA-TTTAA-CCCGGATATACATTACCAGCACG
83530177 AAGCCTGCGGGATTTAACCCGGATATACATTACCAGCACG
1 AAGCCTGCGGGATTTAACCCGGATATACATTACCAGCACG
83530217 AAGCCTGCGGGATTTAACCCGGATATACATTACCAGCACG
1 AAGCCTGCGGGATTTAACCCGGATATACATTACCAGCACG
*
83530257 AAGCTTGCGGGATTTAACCCGGATATA
1 AAGCCTGCGGGATTTAACCCGGATATA
83530284 TAATATATCA
Statistics
Matches: 101, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
38 5 0.05
39 5 0.05
40 91 0.90
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.20
Consensus pattern (40 bp):
AAGCCTGCGGGATTTAACCCGGATATACATTACCAGCACG
Found at i:83538181 original size:40 final size:38
Alignment explanation
Indices: 83538137--83538243 Score: 124
Period size: 40 Copynumber: 2.7 Consensus size: 38
83538127 TACTAGCTCA
* *
83538137 AAGCCTGCGGAACTTTAAGCCCGGATATAGTACCAGCACT
1 AAGCCTGCGGGA-TTTAA-CCCGGATATAGTACCAGCACG
* * *
83538177 AAGCCTGCGGGATCTAACCCGGATATACATTACCAGTACG
1 AAGCCTGCGGGATTTAACCCGGATAT--AGTACCAGCACG
*
83538217 AAGCCTACGGGATTTAACCCGGATATA
1 AAGCCTGCGGGATTTAACCCGGATATA
83538244 TAATATATCG
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
38 10 0.17
39 4 0.07
40 44 0.76
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.21
Consensus pattern (38 bp):
AAGCCTGCGGGATTTAACCCGGATATAGTACCAGCACG
Found at i:83544918 original size:28 final size:28
Alignment explanation
Indices: 83544878--83544941 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 28
83544868 TGGGAAGTAG
* * *
83544878 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGACCATATGAACGAGA
*
83544906 TTGGGCCTGATGGACCATGTGAACGAGA
1 TTGGGCCTGATGGACCATATGAACGAGA
83544934 TTGGGCCT
1 TTGGGCCT
83544942 AAAGGGGCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.20, C:0.17, G:0.36, T:0.27
Consensus pattern (28 bp):
TTGGGCCTGATGGACCATATGAACGAGA
Found at i:83545716 original size:27 final size:27
Alignment explanation
Indices: 83545266--83545730 Score: 447
Period size: 27 Copynumber: 17.3 Consensus size: 27
83545256 AGAAATTATT
* * *
83545266 GAAATACTCTCAATTTGTAAAATTATC
1 GAAATACCCTCGATTTGTAAAATTACC
* * **
83545293 AAAATATCCC-CAATTTGTAAAATTGTC
1 GAAATA-CCCTCGATTTGTAAAATTACC
* *
83545320 GAAATACCCTC-AATTGTAAAATTACT
1 GAAATACCCTCGATTTGTAAAATTACC
83545346 GAAATACCCTCGATTTGTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
* *
83545373 GAAATACCCCCGATTTTTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
* * * *
83545400 GAAACACGCTTGATTGGTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
* * *
83545427 AAAATACCC-CTAATTTGTAAAATTACT
1 GAAATACCCTC-GATTTGTAAAATTACC
* * *
83545454 GAAATACCTTC-AATTGTGAAATTA-C
1 GAAATACCCTCGATTTGTAAAATTACC
* *
83545479 TAAAGTACCCTCAATTTGTAAAATTACC
1 GAAA-TACCCTCGATTTGTAAAATTACC
* * ** *
83545507 AAAATACTCTTAATTTGTGAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
* * *
83545534 AAAACACCCTCGATTTGTAAACTTACC
1 GAAATACCCTCGATTTGTAAAATTACC
* *
83545561 GAAACACCCTCAATTTGTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
*
83545588 GAAATACCCTTGATTTGTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
*
83545615 GAAACACCCTCGATTTGTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
* * *
83545642 AAAATACCCTCGATTAGTAAAATTATC
1 GAAATACCCTCGATTTGTAAAATTACC
* * *
83545669 GAAATACCCCCGATTTATAAAATTATC
1 GAAATACCCTCGATTTGTAAAATTACC
* * * *
83545696 AAAATACCCTTG-TAGTGTAAAATTACT
1 GAAATACCCTCGAT-TTGTAAAATTACC
83545723 GAAATACC
1 GAAATACC
83545731 TTTGTAACGC
Statistics
Matches: 361, Mismatches: 68, Indels: 18
0.81 0.15 0.04
Matches are distributed among these distances:
25 3 0.01
26 43 0.12
27 308 0.85
28 7 0.02
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
GAAATACCCTCGATTTGTAAAATTACC
Found at i:83547134 original size:93 final size:93
Alignment explanation
Indices: 83547019--83547189 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
83547009 GCCCCTAAGT
* * *
83547019 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGGCTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
83547084 TGAGTTCGGATGCCTGGTTACATCTCAC
66 CGAGTTCGGATGCCTGGTTACATCTCAC
* * *
83547112 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
83547177 CGAGTTCGGATGC
66 CGAGTTCGGATGC
83547190 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTGGTTACATCTCAC
Found at i:83547176 original size:46 final size:46
Alignment explanation
Indices: 83547014--83547186 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
83547004 AACCCGCCCC
* * * *
83547014 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * * *
83547060 TAAATGAACTCGGGCTCAACTCAATGAGTTCGGATGCCTGGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CAT--TTGCATCCA
* *
83547108 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
83547153 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
83547187 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 4 0.04
46 58 0.56
47 27 0.26
48 4 0.04
49 1 0.01
50 4 0.04
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:83552646 original size:14 final size:14
Alignment explanation
Indices: 83552627--83552654 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
83552617 CCATCTCTAC
83552627 TTAACACTATCCTA
1 TTAACACTATCCTA
83552641 TTAACACTATCCTA
1 TTAACACTATCCTA
83552655 AAATTAGTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.29, G:0.00, T:0.36
Consensus pattern (14 bp):
TTAACACTATCCTA
Found at i:83559238 original size:18 final size:16
Alignment explanation
Indices: 83559207--83559241 Score: 52
Period size: 18 Copynumber: 2.1 Consensus size: 16
83559197 TTGGACAAAA
83559207 ATTTTAATATTTTTTT
1 ATTTTAATATTTTTTT
83559223 ATTTTGAATAATTTTTTT
1 ATTTT-AAT-ATTTTTTT
83559241 A
1 A
83559242 AAATAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 3 0.18
18 9 0.53
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.69
Consensus pattern (16 bp):
ATTTTAATATTTTTTT
Found at i:83562116 original size:50 final size:50
Alignment explanation
Indices: 83562041--83562143 Score: 197
Period size: 50 Copynumber: 2.1 Consensus size: 50
83562031 TGCCATTGAC
*
83562041 ATAATAAAAGGGTTATACAAACTTCGGTTAAGTCAATTGCTGATGTCTGG
1 ATAATAAAAGGGTTATACAAACTTCGGTTAAGTCAATTGCTAATGTCTGG
83562091 ATAATAAAAGGGTTATACAAACTTCGGTTAAGTCAATTGCTAATGTCTGG
1 ATAATAAAAGGGTTATACAAACTTCGGTTAAGTCAATTGCTAATGTCTGG
83562141 ATA
1 ATA
83562144 TTGACTTCAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (50 bp):
ATAATAAAAGGGTTATACAAACTTCGGTTAAGTCAATTGCTAATGTCTGG
Found at i:83564277 original size:12 final size:12
Alignment explanation
Indices: 83564260--83564284 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
83564250 TTGTTAAAAG
83564260 TTAACGTGTTAT
1 TTAACGTGTTAT
83564272 TTAACGTGTTAT
1 TTAACGTGTTAT
83564284 T
1 T
83564285 GGAATAATCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.16, T:0.52
Consensus pattern (12 bp):
TTAACGTGTTAT
Found at i:83577317 original size:12 final size:12
Alignment explanation
Indices: 83577300--83577333 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
83577290 CGGCCTGTCC
83577300 ATATTAATTTTT
1 ATATTAATTTTT
*
83577312 ATATTATTTTTT
1 ATATTAATTTTT
83577324 ATA-TAATTTT
1 ATATTAATTTT
83577334 AAAATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:83577491 original size:30 final size:31
Alignment explanation
Indices: 83577455--83577517 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
83577445 CAACTTAACA
*
83577455 AACAAA-TGTCTTTAAAATAATAACAAAATT
1 AACAAATTATCTTTAAAATAATAACAAAATT
83577485 AACAAATTATCTTTAAAATAATAACAAAATT
1 AACAAATTATCTTTAAAATAATAACAAAATT
83577516 AA
1 AA
83577518 TAAAAAATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 6 0.19
31 25 0.81
ACGTcount: A:0.59, C:0.10, G:0.02, T:0.30
Consensus pattern (31 bp):
AACAAATTATCTTTAAAATAATAACAAAATT
Found at i:83578558 original size:14 final size:15
Alignment explanation
Indices: 83578539--83578567 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
83578529 TTAGTATAAT
83578539 TAAATA-TTAAAAAA
1 TAAATATTTAAAAAA
83578553 TAAATATTTAAAAAA
1 TAAATATTTAAAAAA
83578568 AAGATACATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
TAAATATTTAAAAAA
Found at i:83579323 original size:22 final size:23
Alignment explanation
Indices: 83579297--83579350 Score: 67
Period size: 22 Copynumber: 2.4 Consensus size: 23
83579287 CTTTTTAAAT
*
83579297 TTTTTATCATTTTTATTTATTTA
1 TTTTTATCATTTATATTTATTTA
*
83579320 TTTTTAT-AATTATATTTATTT-
1 TTTTTATCATTTATATTTATTTA
*
83579341 TTTTTCTCAT
1 TTTTTATCAT
83579351 CAACTTTGCT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
21 6 0.23
22 13 0.50
23 7 0.27
ACGTcount: A:0.22, C:0.06, G:0.00, T:0.72
Consensus pattern (23 bp):
TTTTTATCATTTATATTTATTTA
Found at i:83580665 original size:52 final size:52
Alignment explanation
Indices: 83580607--83580715 Score: 175
Period size: 52 Copynumber: 2.1 Consensus size: 52
83580597 CCGTTAATCC
*
83580607 CTATTCATTCAAT-TAGAGGTAAATTCAAGAGGGCAAATCATATATGATGAAA
1 CTATTCATTC-ATCTAGAAGTAAATTCAAGAGGGCAAATCATATATGATGAAA
* *
83580659 CTATTCATTCATCTAGAAGTAAATTTAAGAGGGCAAGTCATATATGATGAAA
1 CTATTCATTCATCTAGAAGTAAATTCAAGAGGGCAAATCATATATGATGAAA
83580711 CTATT
1 CTATT
83580716 AGTTAATACA
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
51 2 0.04
52 51 0.96
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (52 bp):
CTATTCATTCATCTAGAAGTAAATTCAAGAGGGCAAATCATATATGATGAAA
Found at i:83587801 original size:21 final size:21
Alignment explanation
Indices: 83587762--83587801 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
83587752 GGACTAAACC
* *
83587762 GAAAACTTTGAGAAGTTTCAG
1 GAAAACTTAGAAAAGTTTCAG
*
83587783 GAAAACTTAGAAAATTTTC
1 GAAAACTTAGAAAAGTTTC
83587802 CCATGACACA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.10, G:0.17, T:0.30
Consensus pattern (21 bp):
GAAAACTTAGAAAAGTTTCAG
Found at i:83590519 original size:44 final size:45
Alignment explanation
Indices: 83590446--83590535 Score: 173
Period size: 44 Copynumber: 2.0 Consensus size: 45
83590436 AAAATTCAAC
83590446 CAAAATAGTACCCAAAAGAGCCTTTGATAGTGTGGGCGACTTCGA
1 CAAAATAGTACCCAAAAGAGCCTTTGATAGTGTGGGCGACTTCGA
83590491 CAAAATAGTACCC-AAAGAGCCTTTGATAGTGTGGGCGACTTCGA
1 CAAAATAGTACCCAAAAGAGCCTTTGATAGTGTGGGCGACTTCGA
83590535 C
1 C
83590536 TTCAAGATCC
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
44 32 0.71
45 13 0.29
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.22
Consensus pattern (45 bp):
CAAAATAGTACCCAAAAGAGCCTTTGATAGTGTGGGCGACTTCGA
Found at i:83591134 original size:40 final size:40
Alignment explanation
Indices: 83590952--83591174 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
83590942 TCCTCGTTCA
* * * * *
83590952 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
83590991 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
83591031 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
83591071 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
83591111 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
83591151 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
83591175 CAGCATTTAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:83598983 original size:81 final size:79
Alignment explanation
Indices: 83598836--83599061 Score: 242
Period size: 81 Copynumber: 2.8 Consensus size: 79
83598826 GCTCCTCGTT
* * * *
83598836 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACT-CACACAATGCCTTCGGGACATAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAATAACTGCACA-AATGCCTTCGGGACTTAACCCGG
83598900 ATTTAACAACTCGCA
65 ATTTAACAACTCGCA
* *
83598915 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAGAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAATAACT-GCACA-AATGCCTTCGGGACTTAACCCG
** *
83598980 GATTTAGTATCTCGCA
64 GATTTAACAACTCGCA
* * * * * *
83598996 CAAAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAATAAC-T-GCACAAATGCCTTCGGGACTTAACCC
83599059 GGA
63 GGA
83599062 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 19, Indels: 7
0.83 0.13 0.05
Matches are distributed among these distances:
79 31 0.25
80 23 0.19
81 64 0.52
82 6 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAATAACTGCACAAATGCCTTCGGGACTTAACCCGGA
TTTAACAACTCGCA
Found at i:83599021 original size:40 final size:40
Alignment explanation
Indices: 83598836--83599061 Score: 242
Period size: 40 Copynumber: 5.7 Consensus size: 40
83598826 GCTCCTCGTT
* * * * *
83598836 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* *
83598876 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
*
83598915 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* *
83598955 CAGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CA-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* ** * * * *
83598996 CAAAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCA
*
83599037 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
83599062 CAGCATTCAA
Statistics
Matches: 162, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
39 37 0.23
40 76 0.47
41 49 0.30
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
Found at i:83599070 original size:41 final size:41
Alignment explanation
Indices: 83598993--83599070 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
83598983 TTAGTATCTC
* * *
83598993 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
83599034 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
83599071 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:83600905 original size:44 final size:43
Alignment explanation
Indices: 83600840--83600929 Score: 162
Period size: 44 Copynumber: 2.1 Consensus size: 43
83600830 ACATGTATTG
*
83600840 CATCCATAATGAACTCGGACCAACTCAACGAGCTCAGATGCTCA
1 CATCCATAATGAACTCAGACCAACTCAACGAGCTCAGATGC-CA
83600884 CATCCATAATGAACTCAGACCAACTCAACGAGCTCAGATGCCA
1 CATCCATAATGAACTCAGACCAACTCAACGAGCTCAGATGCCA
83600927 CAT
1 CAT
83600930 ATATCATGAA
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
43 5 0.11
44 40 0.89
ACGTcount: A:0.36, C:0.32, G:0.14, T:0.18
Consensus pattern (43 bp):
CATCCATAATGAACTCAGACCAACTCAACGAGCTCAGATGCCA
Found at i:83605996 original size:48 final size:47
Alignment explanation
Indices: 83605925--83606150 Score: 254
Period size: 48 Copynumber: 4.7 Consensus size: 47
83605915 TGATATGTGT
** **
83605925 GCCAGTGTAAGACCATGTCTGGGACATGGTGTCAGCCACGATATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-GCCATAATATGAGA
* * * * * *
83605973 GCCAGTGTAAGACTATGTTTGGGACATGACATCGACATTAATATGTGT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGCCA-TAATATGAGA
* *
83606021 GCGAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATAACATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATC-GCCATAATATGAGA
* * * **
83606069 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACAAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGCCA-TAATATGAGA
*
83606117 GCTAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCG
83606151 GCCTCGGCAT
Statistics
Matches: 150, Mismatches: 25, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
47 6 0.04
48 141 0.94
49 3 0.02
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (47 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGCCATAATATGAGA
Found at i:83606081 original size:96 final size:96
Alignment explanation
Indices: 83605917--83606192 Score: 340
Period size: 96 Copynumber: 2.9 Consensus size: 96
83605907 CATTTGGGTG
** * * *
83605917 ATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGTGTCAGCCACGATATGAGAGCCAGTGTA
1 ATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGACATGAGAGCCAGTGTA
83605982 AGACTATGTTTGGGACATGACATCGACATTA
66 AGACTATGTTTGGGACATGACATCGACATTA
* *
83606013 ATATGTGTGCGAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATAACATGAGAGCCAGTGTA
1 ATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGACATGAGAGCCAGTGTA
* * * *
83606078 AGACCATGTCTGGGACATGGCATCGACATTG
66 AGACTATGTTTGGGACATGACATCGACATTA
* *** * * * *
83606109 AGACAAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCC-TCGGCATGTA-AGCCAATG
1 ATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT-GACATG-AGAGCCAGTG
*
83606172 TAAGACTATGTTTGGAACATG
64 TAAGACTATGTTTGGGACATG
83606193 GCGTCGGCAA
Statistics
Matches: 155, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
95 1 0.01
96 153 0.99
97 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (96 bp):
ATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGACATGAGAGCCAGTGTA
AGACTATGTTTGGGACATGACATCGACATTA
Found at i:83606174 original size:48 final size:46
Alignment explanation
Indices: 83605925--83606200 Score: 194
Period size: 48 Copynumber: 5.8 Consensus size: 46
83605915 TGATATGTGT
** * * **
83605925 GCCAGTGTAAGACCATGTCTGGGACATGGTGTCAGCCACGATATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCC-TGGCATGA-A
* * * * * *** **
83605973 GCCAGTGTAAGACTATGTTTGGGACATGACATCGACATTAATATGTGT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTGGCATG-AA
* **
83606021 GCGAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATAACATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCC-TGGCATGA-A
* * *
83606069 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACAAG-A
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTG-G-CATGAA
*
83606117 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGGCATGTAA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-GGCATG-AA
* * * * *
83606165 GCCAATGTAAGACTATGTTTGGAACATGGCGTCGGC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
83606201 AATTCACCCT
Statistics
Matches: 181, Mismatches: 37, Indels: 20
0.76 0.16 0.08
Matches are distributed among these distances:
46 3 0.02
47 2 0.01
48 173 0.96
50 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (46 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTGGCATGAA
Found at i:83607513 original size:19 final size:19
Alignment explanation
Indices: 83607481--83607517 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
83607471 AGGTATTGTG
83607481 GAAAGTTTCAAACTAGGAT
1 GAAAGTTTCAAACTAGGAT
83607500 GAAA-TTTCATAACTAGGA
1 GAAAGTTTCA-AACTAGGA
83607518 AATGTATGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.43, C:0.11, G:0.19, T:0.27
Consensus pattern (19 bp):
GAAAGTTTCAAACTAGGAT
Found at i:83607717 original size:46 final size:46
Alignment explanation
Indices: 83607650--83607747 Score: 169
Period size: 46 Copynumber: 2.1 Consensus size: 46
83607640 ATGGTAGAAA
** *
83607650 ATGAAAGGTTGTTGATAGATAAACAACTTTTACAAAGAGAATTTTT
1 ATGAAAGGTTCATGATAGATAAACAACTTTTACAAAGAGAATTTTG
83607696 ATGAAAGGTTCATGATAGATAAACAACTTTTACAAAGAGAATTTTG
1 ATGAAAGGTTCATGATAGATAAACAACTTTTACAAAGAGAATTTTG
83607742 ATGAAA
1 ATGAAA
83607748 TCATGATTTA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.44, C:0.07, G:0.17, T:0.32
Consensus pattern (46 bp):
ATGAAAGGTTCATGATAGATAAACAACTTTTACAAAGAGAATTTTG
Found at i:83617604 original size:45 final size:45
Alignment explanation
Indices: 83617554--83617642 Score: 178
Period size: 45 Copynumber: 2.0 Consensus size: 45
83617544 TGCAGTATGG
83617554 GTTGTGATTGATAAGTTAACGAAGTCGGCTCATTTTATCCCAGTC
1 GTTGTGATTGATAAGTTAACGAAGTCGGCTCATTTTATCCCAGTC
83617599 GTTGTGATTGATAAGTTAACGAAGTCGGCTCATTTTATCCCAGT
1 GTTGTGATTGATAAGTTAACGAAGTCGGCTCATTTTATCCCAGT
83617643 TCGTATGGAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.36
Consensus pattern (45 bp):
GTTGTGATTGATAAGTTAACGAAGTCGGCTCATTTTATCCCAGTC
Found at i:83623169 original size:15 final size:15
Alignment explanation
Indices: 83623106--83623169 Score: 67
Period size: 15 Copynumber: 4.3 Consensus size: 15
83623096 GTATCGTATA
* *
83623106 TTGGATTTCTATATA
1 TTGGATTTCTTTATC
*
83623121 TTGGATTTCTTCATC
1 TTGGATTTCTTTATC
*
83623136 TTGGATTT-TTCTGTC
1 TTGGATTTCTT-TATC
*
83623151 TTGGATTTCTTTATG
1 TTGGATTTCTTTATC
83623166 TTGG
1 TTGG
83623170 TCTTCTTGTC
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
14 2 0.05
15 36 0.90
16 2 0.05
ACGTcount: A:0.14, C:0.11, G:0.19, T:0.56
Consensus pattern (15 bp):
TTGGATTTCTTTATC
Found at i:83625497 original size:30 final size:29
Alignment explanation
Indices: 83625461--83625517 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
83625451 TTACGAGCCT
* *
83625461 AGGGGTAAAAGTGTAAATATGATAAAGTTA
1 AGGGGTAAAAATGCAAATATGA-AAAGTTA
*
83625491 AGGGGTAAAAATGCAAATTTGAAAAGT
1 AGGGGTAAAAATGCAAATATGAAAAGT
83625518 ATGATTTTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.47, C:0.02, G:0.26, T:0.25
Consensus pattern (29 bp):
AGGGGTAAAAATGCAAATATGAAAAGTTA
Found at i:83626103 original size:44 final size:44
Alignment explanation
Indices: 83626048--83626131 Score: 150
Period size: 44 Copynumber: 1.9 Consensus size: 44
83626038 TATGTATAAG
* *
83626048 GCATCTGAGCTCGTTGAGTTGGTCTAAGTTCATTATGGATATGA
1 GCATCCGAGCTCGTTGAGTTGGTCCAAGTTCATTATGGATATGA
83626092 GCATCCGAGCTCGTTGAGTTGGTCCAAGTTCATTATGGAT
1 GCATCCGAGCTCGTTGAGTTGGTCCAAGTTCATTATGGAT
83626132 GCGATACATG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35
Consensus pattern (44 bp):
GCATCCGAGCTCGTTGAGTTGGTCCAAGTTCATTATGGATATGA
Found at i:83635795 original size:41 final size:41
Alignment explanation
Indices: 83635733--83635821 Score: 144
Period size: 41 Copynumber: 2.2 Consensus size: 41
83635723 AATTTTTTGT
* *
83635733 ACACGGG-CTAAGACACGGGCGTGTCCTGGTCATGTGAAGG
1 ACACGGGCCTAAGACACAGGCGTGTCCTGGCCATGTGAAGG
*
83635773 ACACGGGCCTGAGACACAGGCGTGTCCTGGCCATGTGAAGG
1 ACACGGGCCTAAGACACAGGCGTGTCCTGGCCATGTGAAGG
83635814 ACACGGGC
1 ACACGGGC
83635822 GTGTTTCAGG
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
40 7 0.16
41 38 0.84
ACGTcount: A:0.22, C:0.26, G:0.37, T:0.15
Consensus pattern (41 bp):
ACACGGGCCTAAGACACAGGCGTGTCCTGGCCATGTGAAGG
Found at i:83637159 original size:21 final size:21
Alignment explanation
Indices: 83637107--83637164 Score: 80
Period size: 21 Copynumber: 2.7 Consensus size: 21
83637097 TAACCTACAG
83637107 CACGAGTGTGTCCCTTGACCA
1 CACGAGTGTGTCCCTTGACCA
* * *
83637128 CACGGGCGTGTCCTTTGACCA
1 CACGAGTGTGTCCCTTGACCA
83637149 CACGAGTGTGTACCCT
1 CACGAGTGTGT-CCCT
83637165 GCATCTGGGA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 27 0.90
22 3 0.10
ACGTcount: A:0.17, C:0.33, G:0.26, T:0.24
Consensus pattern (21 bp):
CACGAGTGTGTCCCTTGACCA
Found at i:83642136 original size:20 final size:19
Alignment explanation
Indices: 83642100--83642150 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
83642090 AAGGGGTTTT
*
83642100 TTGTAAA-GTTGTAAAATAA
1 TTGTAAATG-TGTGAAATAA
83642119 GTTGTAAATGTGTGAAATAA
1 -TTGTAAATGTGTGAAATAA
83642139 TTG-AAAT-TGTGA
1 TTGTAAATGTGTGA
83642151 GTTACTATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 3 0.10
20 16 0.55
21 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.37
Consensus pattern (19 bp):
TTGTAAATGTGTGAAATAA
Found at i:83643943 original size:26 final size:26
Alignment explanation
Indices: 83643914--83643967 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
83643904 ATTCCGCACA
83643914 CTTAGTGCTATCTCAATTAACCGAAG
1 CTTAGTGCTATCTCAATTAACCGAAG
83643940 CTTAGTGCTATCTCAATTAACCGAAG
1 CTTAGTGCTATCTCAATTAACCGAAG
83643966 CT
1 CT
83643968 ATCTCGGTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (26 bp):
CTTAGTGCTATCTCAATTAACCGAAG
Found at i:83648778 original size:29 final size:29
Alignment explanation
Indices: 83648743--83648816 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
83648733 GTTGTGAGAT
* *
83648743 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
83648772 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
83648801 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
83648817 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:83654342 original size:119 final size:120
Alignment explanation
Indices: 83654160--83654382 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
83654150 TCCTCGTTCA
*
83654160 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
83654225 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
83654280 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
83654342 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
83654383 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.04
119 66 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:83654382 original size:40 final size:40
Alignment explanation
Indices: 83654158--83654382 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
83654148 GCTCCTCGTT
* *
83654158 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
83654198 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
83654238 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
83654278 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
83654317 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
83654358 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
83654383 CATCATTCAA
Statistics
Matches: 164, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 119 0.73
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:83663716 original size:43 final size:44
Alignment explanation
Indices: 83663654--83663801 Score: 137
Period size: 43 Copynumber: 3.5 Consensus size: 44
83663644 TGTGAGATCG
* * *
83663654 TGTACGACCGTGTCTGGGACACAGGCCTCG-ATTGAGATTTACA
1 TGTAAGACCATGTCTGGGACACAGGCATCGTATTGAGATTTACA
* * *
83663697 TGTAAGACCATGTTTGGGACATCA-GCATCGTATT-TGATTT-CG
1 TGTAAGACCATGTCTGGGACA-CAGGCATCGTATTGAGATTTACA
* * *
83663739 TGTAAGACCCTGTCTGGGATAGAGGCATCGATATTGA-A-TTACA
1 TGTAAGACCATGTCTGGGACACAGGCATCG-TATTGAGATTTACA
* *
83663782 TGTAAGACCACGTTTGGGAC
1 TGTAAGACCATGTCTGGGAC
83663802 GTCGGCATTA
Statistics
Matches: 83, Mismatches: 16, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
41 1 0.01
42 27 0.33
43 50 0.60
44 5 0.06
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (44 bp):
TGTAAGACCATGTCTGGGACACAGGCATCGTATTGAGATTTACA
Found at i:83663809 original size:43 final size:42
Alignment explanation
Indices: 83663692--83663809 Score: 107
Period size: 42 Copynumber: 2.8 Consensus size: 42
83663682 CGATTGAGAT
* * *
83663692 TTACATGTAAGACCATGTTTGGGACATCAGCATCGTATTTGA
1 TTACATGTAAGACCACGTTTGGGACGTCGGCATCGTATTTGA
* * * * *
83663734 TTTCGTGTAAGACC-CTGTCTGGGATAG-AGGCATCG-ATATTGAA
1 TTACATGTAAGACCAC-GTTTGGGA-CGTCGGCATCGTAT-TTG-A
83663777 TTACATGTAAGACCACGTTTGGGACGTCGGCAT
1 TTACATGTAAGACCACGTTTGGGACGTCGGCAT
83663810 TATACTTGAT
Statistics
Matches: 57, Mismatches: 13, Indels: 11
0.70 0.16 0.14
Matches are distributed among these distances:
41 2 0.04
42 29 0.51
43 25 0.44
44 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (42 bp):
TTACATGTAAGACCACGTTTGGGACGTCGGCATCGTATTTGA
Found at i:83663819 original size:85 final size:85
Alignment explanation
Indices: 83663651--83663820 Score: 209
Period size: 85 Copynumber: 2.0 Consensus size: 85
83663641 GTCTGTGAGA
* * * *
83663651 TCGTGTACGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACATGTAAGACCATGTTTGGGA
1 TCGTGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGATTTACATGTAAGACCACGTTTGGGA
* *
83663716 CATCAGCATCGTATTTGATT
66 CATCAGCATCATACTTGATT
* *
83663736 TCGTGTAAGACCCTGTCTGGGATAGAGGCATCGATATTGA-A-TTACATGTAAGACCACGTTTGG
1 TCGTGTAAGACCCTGTCTGGGACACAGGCATCG--ATTGAGATTTACATGTAAGACCACGTTTGG
* * *
83663799 GACGTCGGCATTATACTTGATT
64 GACATCAGCATCATACTTGATT
83663821 ATGAGCATCT
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
85 66 0.92
86 1 0.01
87 5 0.07
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.31
Consensus pattern (85 bp):
TCGTGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGATTTACATGTAAGACCACGTTTGGGA
CATCAGCATCATACTTGATT
Found at i:83669916 original size:27 final size:26
Alignment explanation
Indices: 83669886--83669965 Score: 72
Period size: 27 Copynumber: 3.0 Consensus size: 26
83669876 TGACTATGTC
*
83669886 ACATTCACTATTACTGGTGGCTTTGCT
1 ACATT-ACTATTACTGGTAGCTTTGCT
* * *
83669913 ACATTTACTGCTT-CTGGCAGCTATGCT
1 ACA-TTACT-ATTACTGGTAGCTTTGCT
* *
83669940 GCATTATTATTACTGGTAGCTTTGCT
1 ACATTACTATTACTGGTAGCTTTGCT
83669966 GTGATATTTG
Statistics
Matches: 41, Mismatches: 9, Indels: 7
0.72 0.16 0.12
Matches are distributed among these distances:
25 2 0.05
26 16 0.39
27 19 0.46
28 4 0.10
ACGTcount: A:0.19, C:0.21, G:0.19, T:0.41
Consensus pattern (26 bp):
ACATTACTATTACTGGTAGCTTTGCT
Found at i:83670149 original size:33 final size:34
Alignment explanation
Indices: 83670112--83670179 Score: 102
Period size: 33 Copynumber: 2.0 Consensus size: 34
83670102 CCCACACTGC
* *
83670112 TACTGTATAGGGCTAAGGCCTAGACTG-TATTGA
1 TACTGAATAGGGCTAAGGCCTAGAATGTTATTGA
*
83670145 TACTGAATAGGGCTCAGGCCTAGAATGTTATTGA
1 TACTGAATAGGGCTAAGGCCTAGAATGTTATTGA
83670179 T
1 T
83670180 CTGGGCTTAG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
33 24 0.77
34 7 0.23
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (34 bp):
TACTGAATAGGGCTAAGGCCTAGAATGTTATTGA
Found at i:83674792 original size:19 final size:17
Alignment explanation
Indices: 83674760--83674796 Score: 56
Period size: 19 Copynumber: 2.1 Consensus size: 17
83674750 CTCAGAAACA
83674760 CCTTTGAAAAAATTTTT
1 CCTTTGAAAAAATTTTT
83674777 CCTTTAGAACAAAATTTTT
1 CCTTT-GAA-AAAATTTTT
83674796 C
1 C
83674797 TCAAAATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 5 0.28
18 3 0.17
19 10 0.56
ACGTcount: A:0.35, C:0.16, G:0.05, T:0.43
Consensus pattern (17 bp):
CCTTTGAAAAAATTTTT
Found at i:83678319 original size:40 final size:39
Alignment explanation
Indices: 83678201--83678347 Score: 176
Period size: 40 Copynumber: 3.8 Consensus size: 39
83678191 TGCATGATAT
**
83678201 TGGGAATA-ATCCGGACATGGGGTCCGCAGGCTATATGC
1 TGGGAATATATCCGGACATGAAGTCCGCAGGCTATATGC
* *
83678239 T-GGAATATAT-TGGACATGAGGTCCGCAGGCTATATGC
1 TGGGAATATATCCGGACATGAAGTCCGCAGGCTATATGC
* *
83678276 TGGGAATATATCCGGACTTTGAAGTCCGTAGGCTAT-TGTC
1 TGGGAATATATCCGGAC-ATGAAGTCCGCAGGCTATATG-C
*
83678316 TGGGAAATATATCCGGACTTGAAGTCCGCAGG
1 TGGG-AATATATCCGGACATGAAGTCCGCAGG
83678348 TACGTGTTGG
Statistics
Matches: 96, Mismatches: 7, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
37 32 0.33
38 12 0.12
39 6 0.06
40 33 0.34
41 13 0.14
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (39 bp):
TGGGAATATATCCGGACATGAAGTCCGCAGGCTATATGC
Found at i:83684535 original size:1 final size:1
Alignment explanation
Indices: 83684529--83684568 Score: 80
Period size: 1 Copynumber: 40.0 Consensus size: 1
83684519 GACAAAAGAG
83684529 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
83684569 GGCATTACCT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 39 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:83688169 original size:78 final size:80
Alignment explanation
Indices: 83688079--83688252 Score: 182
Period size: 78 Copynumber: 2.2 Consensus size: 80
83688069 ATAATTCCGC
* * **
83688079 GGCTAAGCCCCGAAGGC-AGTTG-GCGAGTTACTATTATTC-GGGCTAAGTCCC-GAAGCATTTG
1 GGCTAAGTCCCGAAGGCAAGTTGTACGA-TTACTA-TAACCGGGGCTAAGTCCCGGAAGCATTTG
* *
83688140 TGCGAGT-TTACTCTAC-G
64 -GCGAGTACTA-TCAACTG
*
83688157 GGCTAAGTCCCG-AGGCAATTTGTACGATTACTATAACCGGGGCTAAGTCCCGGGAAGCATTTGG
1 GGCTAAGTCCCGAAGGCAAGTTGTACGATTACTATAACCGGGGCTAAGTCCC-GGAAGCATTTGG
83688221 CGAGTACTATCAACTG
65 CGAGTACTATCAACTG
*
83688237 GGCTAAGTCTCGAAGG
1 GGCTAAGTCCCGAAGG
83688253 GCATTTGAGC
Statistics
Matches: 80, Mismatches: 8, Indels: 13
0.79 0.08 0.13
Matches are distributed among these distances:
77 7 0.09
78 33 0.41
79 13 0.16
80 24 0.30
81 3 0.04
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (80 bp):
GGCTAAGTCCCGAAGGCAAGTTGTACGATTACTATAACCGGGGCTAAGTCCCGGAAGCATTTGGC
GAGTACTATCAACTG
Found at i:83688207 original size:40 final size:37
Alignment explanation
Indices: 83688079--83688251 Score: 120
Period size: 40 Copynumber: 4.4 Consensus size: 37
83688069 ATAATTCCGC
* * *
83688079 GGCTAAGCCCCGAAGGCAGTTG-GCGAGTTACTATTATTCG
1 GGCTAAGTCCCGAA-GCATTTGTACGAGTTACTA-TA--CG
* *
83688119 GGCTAAGTCCCGAAGCATTTGTGCGAGTTTACTCTACG
1 GGCTAAGTCCCGAAGCATTTGTACGAG-TTACTATACG
*
83688157 GGCTAAGTCCCGAGGCAATTTGTACGA-TTACTATAACCGG
1 GGCTAAGTCCCGAAGC-ATTTGTACGAGTTACTAT-A-C-G
*
83688197 GGCTAAGTCCCGGGAAGCATTTG-GCGAG-TACTATCAACTG
1 GGCTAAGTCCC--GAAGCATTTGTACGAGTTACTAT--AC-G
*
83688237 GGCTAAGTCTCGAAG
1 GGCTAAGTCCCGAAG
83688252 GGCATTTGAG
Statistics
Matches: 113, Mismatches: 10, Indels: 22
0.78 0.07 0.15
Matches are distributed among these distances:
37 6 0.05
38 22 0.19
39 16 0.14
40 53 0.47
41 12 0.11
42 4 0.04
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (37 bp):
GGCTAAGTCCCGAAGCATTTGTACGAGTTACTATACG
Found at i:83696058 original size:39 final size:40
Alignment explanation
Indices: 83695963--83696224 Score: 328
Period size: 39 Copynumber: 6.7 Consensus size: 40
83695953 TTGAATGATG
*
83695963 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
83696001 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
83696042 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
83696081 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
83696120 TCCGGGCTAAG-CCCAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
83696159 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
83696198 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
83696225 AACGAGGAGA
Statistics
Matches: 201, Mismatches: 13, Indels: 17
0.87 0.06 0.07
Matches are distributed among these distances:
39 131 0.65
40 58 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:83700789 original size:6 final size:6
Alignment explanation
Indices: 83700774--83700810 Score: 67
Period size: 6 Copynumber: 6.3 Consensus size: 6
83700764 AAAATTAACC
83700774 AAAT-A AAATAA AAATAA AAATAA AAATAA AAATAA AA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AA
83700811 CCAATACTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 4 0.13
6 27 0.87
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:83702908 original size:20 final size:20
Alignment explanation
Indices: 83702885--83703001 Score: 110
Period size: 20 Copynumber: 5.8 Consensus size: 20
83702875 CATCAGTAAT
* *
83702885 AACAATAATTTATCCATATC
1 AACAGTAATTCATCCATATC
* *
83702905 AACAGTAATTCATCTATATT
1 AACAGTAATTCATCCATATC
* * *
83702925 AATAGTAATTCATTCATTTC
1 AACAGTAATTCATCCATATC
* *
83702945 AATAGTAATTCACCCATATC
1 AACAGTAATTCATCCATATC
* *
83702965 AACAATAATTCATTCA-ATTC
1 AACAGTAATTCATCCATA-TC
*
83702985 AATAGTAATTCATCCAT
1 AACAGTAATTCATCCAT
83703002 TAATAAAATA
Statistics
Matches: 76, Mismatches: 19, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
19 1 0.01
20 75 0.99
ACGTcount: A:0.41, C:0.19, G:0.03, T:0.37
Consensus pattern (20 bp):
AACAGTAATTCATCCATATC
Found at i:83702974 original size:40 final size:40
Alignment explanation
Indices: 83702869--83703001 Score: 144
Period size: 40 Copynumber: 3.3 Consensus size: 40
83702859 CGTATAACCC
* * * *
83702869 GTAATTCAT-CAGTAAT-AACAATAATTTATCCATATCAACA
1 GTAATTCATCCA-T-ATCAACAATAATTCATTCATTTCAATA
* * * *
83702909 GTAATTCATCTATATTAATAGTAATTCATTCATTTCAATA
1 GTAATTCATCCATATCAACAATAATTCATTCATTTCAATA
* *
83702949 GTAATTCACCCATATCAACAATAATTCATTCAATTCAATA
1 GTAATTCATCCATATCAACAATAATTCATTCATTTCAATA
83702989 GTAATTCATCCAT
1 GTAATTCATCCAT
83703002 TAATAAAATA
Statistics
Matches: 77, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
39 2 0.03
40 74 0.96
41 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.05, T:0.37
Consensus pattern (40 bp):
GTAATTCATCCATATCAACAATAATTCATTCATTTCAATA
Found at i:83703263 original size:23 final size:23
Alignment explanation
Indices: 83703219--83703273 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
83703209 AGCTAATAAA
* *
83703219 CAGTAAGCTCTATCGAGTTGAAT
1 CAGTAAGCTCTATCGAGCTGAAG
*
83703242 CGGTAAGCTCTAAT-GAGCTGAAG
1 CAGTAAGCTCT-ATCGAGCTGAAG
83703265 CAGTAAGCT
1 CAGTAAGCT
83703274 TTTACAACCT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 25 0.93
24 2 0.07
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (23 bp):
CAGTAAGCTCTATCGAGCTGAAG
Found at i:83711989 original size:47 final size:45
Alignment explanation
Indices: 83711918--83712278 Score: 248
Period size: 47 Copynumber: 7.7 Consensus size: 45
83711908 TGATTTGTGC
* *
83711918 GCCAGTGTAAGACATGTCTGGGACATGCTTCGACCACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGACCACA-GATGAGA
* ** *
83711964 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTATC-CAGACAAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATC-G-ACCACAGATGAGA
* * * * *
83712012 GCTAGTGTAAGATATGTCTGGGACATGCATC-AGCCATACTATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGA-CCACA-GATGAGA
* * * * *
83712058 GCTAGTGTACGACCATGTCTGGGACATGGCATCGGCACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGAC-CACAGATGAGA
* *
83712106 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGACAGA-GATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-GAC-C-ACAGATGAGA
* * * * * * *
83712153 GCTAGTGTAAGACGTGTTTGGGACATGAATCGACTA-AGA-GTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGACCACAGATG-AGA
* * *
83712197 GCTAGTGTAAGACATGTCTGGGACATGCATC-ATCACGCGTATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGA-C-CAC--AGATGAGA
83712245 GCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCG
83712279 GCAATATATC
Statistics
Matches: 245, Mismatches: 47, Indels: 41
0.74 0.14 0.12
Matches are distributed among these distances:
43 6 0.02
44 31 0.13
45 1 0.00
46 37 0.15
47 86 0.35
48 56 0.23
49 21 0.09
50 7 0.03
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGACCACAGATGAGA
Found at i:83712082 original size:94 final size:92
Alignment explanation
Indices: 83711921--83712279 Score: 358
Period size: 94 Copynumber: 3.8 Consensus size: 92
83711911 TTTGTGCGCC
* * *
83711921 AGTGTAAGACATGTCTGGGACATGCTTC-GACCACATTATGAGAGCCAGTGTAAGACCATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CCATACTATGAGAGCCAGTGTAAGACCATGTCTG
* *
83711985 GGACATGGCATCGGTATCCAGACAAGGGCT
65 GGACATGGCATCGG-A-CCAGAGAAGTGCT
* * * *
83712015 AGTGTAAGATATGTCTGGGACATGCATCAGCCATACTATGATAGCTAGTGTACGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
*
83712080 GACATGGCATCGG-CACAGAGATGAGTGCC
66 GACATGGCATCGGAC-CAGAGA--AGTGCT
* *
83712109 AGTGTAAGACATGTCTGGGACATGCATCAGCC-TCGAC-A-GAGATAGCTAGTGTAAGA-CGTGT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAT--ACTATGAG--AGCCAGTGTAAGACCATGT
* * * **
83712170 TTGGGACAT-GAATC-GACTAAGAGTTGTGCT
62 CTGGGACATGGCATCGGAC-CAGAGAAGTGCT
* *
83712200 AGTGTAAGACATGTCTGGGACATGCATCATCACGCGTA-TATGAGAGCCAGTGTAAGACCATGTC
1 AGTGTAAGACATGTCTGGGACATGCATCA--GC-CATACTATGAGAGCCAGTGTAAGACCATGTC
83712264 TGGGACATGGCATCGG
63 TGGGACATGGCATCGG
83712280 CAATATATCC
Statistics
Matches: 221, Mismatches: 26, Indels: 35
0.78 0.09 0.12
Matches are distributed among these distances:
91 34 0.15
92 18 0.08
93 27 0.12
94 125 0.57
95 17 0.08
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (92 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGGACCAGAGAAGTGCT
Found at i:83713923 original size:17 final size:18
Alignment explanation
Indices: 83713892--83713927 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
83713882 CATGTGGCTT
83713892 GCCCGTGTCGGCCCACAC
1 GCCCGTGTCGGCCCACAC
83713910 GCCCGTGT-GGCCCACAC
1 GCCCGTGTCGGCCCACAC
83713927 G
1 G
83713928 GCCAATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.11, C:0.47, G:0.31, T:0.11
Consensus pattern (18 bp):
GCCCGTGTCGGCCCACAC
Found at i:83716455 original size:20 final size:20
Alignment explanation
Indices: 83716425--83716486 Score: 83
Period size: 20 Copynumber: 3.1 Consensus size: 20
83716415 CAAAGCTAAG
83716425 TATACTTTCACATATAAACT
1 TATACTTTCACATATAAACT
* *
83716445 TATGA-TTTCACATAT-ATCA
1 TAT-ACTTTCACATATAAACT
83716464 TATACTTTCACATATAAACT
1 TATACTTTCACATATAAACT
83716484 TAT
1 TAT
83716487 TTATGGCCGA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
18 1 0.03
19 15 0.43
20 18 0.51
21 1 0.03
ACGTcount: A:0.39, C:0.18, G:0.02, T:0.42
Consensus pattern (20 bp):
TATACTTTCACATATAAACT
Done.