Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 252 of 349
Found at i:83716474 original size:19 final size:19
Alignment explanation
Indices: 83716425--83716480 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
83716415 CAAAGCTAAG
*
83716425 TATACTTTCACATATAAACT
1 TATACTTTCACATAT-AACA
*
83716445 TATGA-TTTCACATATATCA
1 TAT-ACTTTCACATATAACA
83716464 TATACTTTCACATATAA
1 TATACTTTCACATATAA
83716481 ACTTATTTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
18 1 0.03
19 16 0.52
20 13 0.42
21 1 0.03
ACGTcount: A:0.39, C:0.18, G:0.02, T:0.41
Consensus pattern (19 bp):
TATACTTTCACATATAACA
Found at i:83716989 original size:45 final size:45
Alignment explanation
Indices: 83716848--83717107 Score: 191
Period size: 45 Copynumber: 6.0 Consensus size: 45
83716838 ATATCAAACA
* ** **
83716848 ATGCCAACGTCCCAGACATGGTCTTACATGTCA-T-CGCATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAACTACATATATCG
* * * *
83716891 ATGCC-ACTGTCCCAGATAGGGTCTCACACG-AA-T-CAAATA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGAAACTACATATATCG
* * *
83716932 ATGCCGATGTCCCAGACATGGTCTTACACGTAACTACATATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAACTACATATATCG
* *
83716977 ATGCCAACGTCCCAGACGTAGTCTTACACGAAAAC-ACATATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AAACTACATATATCG
* * ** * * *
83717022 ATGCCGACGTCCCAAATGTGGTTTTACATGAAAAC-ACATATATTG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AAACTACATATATCG
* * * *
83717067 ATGCCAACATCCCATACGTAGTCTTACACGAAA--ACATATAT
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAACTACATATAT
83717108 TGAAATCCTA
Statistics
Matches: 179, Mismatches: 31, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
41 26 0.15
42 11 0.06
43 32 0.18
44 8 0.04
45 99 0.55
46 3 0.02
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (45 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAAACTACATATATCG
Found at i:83720805 original size:22 final size:22
Alignment explanation
Indices: 83720777--83720820 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
83720767 ACACATCATT
83720777 CATGAAAGACATCATTATATGA
1 CATGAAAGACATCATTATATGA
83720799 CATGAAAGACATCATTATATGA
1 CATGAAAGACATCATTATATGA
83720821 TTATACTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.14, G:0.14, T:0.27
Consensus pattern (22 bp):
CATGAAAGACATCATTATATGA
Found at i:83725458 original size:48 final size:48
Alignment explanation
Indices: 83725369--83725460 Score: 112
Period size: 48 Copynumber: 1.9 Consensus size: 48
83725359 GATGAGAGCC
* * ****
83725369 AGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCT
1 AGTGTAAGACCATGTCTAGGACATGGCACCGGCACCAATATGTGTGCT
**
83725417 AGTGTAAGATTATGTCTAGGACATGGCACCGGCACCAATATGTG
1 AGTGTAAGACCATGTCTAGGACATGGCACCGGCACCAATATGTG
83725461 ATCCCGTATA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
48 36 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.27
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTAGGACATGGCACCGGCACCAATATGTGTGCT
Found at i:83731634 original size:28 final size:29
Alignment explanation
Indices: 83731602--83731715 Score: 76
Period size: 28 Copynumber: 4.0 Consensus size: 29
83731592 TAACACGGTA
*
83731602 TGGGCCTAAGCCCAGAT-CAGTAACAGTC
1 TGGGCCTAAGCCCAGATACAGTAGCAGTC
* *
83731630 TGGGCTTGAGCCATTCAG-TATCAGT-GCAGTC
1 TGGGCCTAAGCC---CAGATA-CAGTAGCAGTC
* * * *
83731661 TAGGCCTTAGCCC-TATACAGTAGCAGTG
1 TGGGCCTAAGCCCAGATACAGTAGCAGTC
* *
83731689 TGGGCCTAAGCCCA-ATGCAGTATCAGT
1 TGGGCCTAAGCCCAGATACAGTAGCAGT
83731716 ACAGTGTAAT
Statistics
Matches: 66, Mismatches: 12, Indels: 16
0.70 0.13 0.17
Matches are distributed among these distances:
27 4 0.06
28 40 0.61
30 1 0.02
31 17 0.26
32 4 0.06
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.24
Consensus pattern (29 bp):
TGGGCCTAAGCCCAGATACAGTAGCAGTC
Found at i:83738919 original size:19 final size:20
Alignment explanation
Indices: 83738882--83738919 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
83738872 ATAAGGTGGT
83738882 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
83738902 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
83738920 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:83746361 original size:19 final size:20
Alignment explanation
Indices: 83746324--83746361 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
83746314 ATAAGGTGGT
83746324 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
83746344 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
83746362 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:83750826 original size:40 final size:40
Alignment explanation
Indices: 83750782--83751009 Score: 361
Period size: 40 Copynumber: 5.7 Consensus size: 40
83750772 GCTACTTGTT
83750782 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
83750822 CAAATGCCTTCAGGACTTAGCCCGATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
83750862 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
83750902 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * * *
83750942 CAAATGCCTTCGGG-CGTAGCCCAG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
83750981 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
83751010 CATCCGAATA
Statistics
Matches: 172, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
38 1 0.01
39 32 0.19
40 138 0.80
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:83759273 original size:39 final size:40
Alignment explanation
Indices: 83759172--83759393 Score: 137
Period size: 39 Copynumber: 5.7 Consensus size: 40
83759162 GCTCCTCGTT
* ** *
83759172 CAAATGCCTTCG-GACATAGCCCGTTA-TAGTAAATTCGCA
1 CAAATGCCTTCGAGACTTAGCCCGGAATTAGT-AACTCGCA
* *
83759211 -ACAA-GCCTTCGAGACTTAACCCGGATTTAGTAACTCGCA
1 CA-AATGCCTTCGAGACTTAGCCCGGAATTAGTAACTCGCA
* *
83759250 CAAATGCCTTCG-GGCTTAGCCCGGAATTAGTATCTCGCCA
1 CAAATGCCTTCGAGACTTAGCCCGGAATTAGTAACTCG-CA
*
83759290 CAAATG-CTTGCG-G-CTTAGCCCGGGGAATTAGT-ACTCGGTA
1 CAAATGCCTT-CGAGACTTAGCCC--GGAATTAGTAACTC-GCA
* * * * *
83759330 CAAATGCCTTC-TGA-TCTAGTCCGGAATTTGTCACTTAGCA
1 CAAATGCCTTCGAGACT-TAGCCCGGAATTAGTAAC-TCGCA
*
83759370 CAAA-GCCTTCGGGAC-TAGCCCGGA
1 CAAATGCCTTCGAGACTTAGCCCGGA
83759394 CATCATTCAA
Statistics
Matches: 147, Mismatches: 18, Indels: 36
0.73 0.09 0.18
Matches are distributed among these distances:
38 8 0.05
39 74 0.50
40 46 0.31
41 19 0.13
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGAGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:83766459 original size:40 final size:40
Alignment explanation
Indices: 83766404--83766673 Score: 459
Period size: 40 Copynumber: 6.8 Consensus size: 40
83766394 ATTTGAATAC
*
83766404 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
83766444 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
83766484 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
83766524 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* * *
83766564 ATCCGGGCTAAGACCCGAAGGCAATTGCGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* *
83766604 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* * *
83766644 ACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
83766674 TTGTGGTTAT
Statistics
Matches: 217, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 217 1.00
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
Found at i:83774937 original size:40 final size:40
Alignment explanation
Indices: 83774882--83775153 Score: 445
Period size: 40 Copynumber: 6.8 Consensus size: 40
83774872 ATTTGAATAC
*
83774882 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
83774922 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
83774962 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGACATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG--ATAT
83775004 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
*
83775044 ATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* * *
83775084 ATCCGGGCTAAGACCCTAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* ** *
83775124 ACCCGGATTAAGACCCGAAGGCAATTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
83775154 TTGTGGTTAT
Statistics
Matches: 218, Mismatches: 12, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
40 178 0.82
42 40 0.18
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
Found at i:83775099 original size:122 final size:122
Alignment explanation
Indices: 83774874--83775153 Score: 458
Period size: 122 Copynumber: 2.3 Consensus size: 122
83774864 GCATGAGCAT
*
83774874 TTGA-ATACATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCC
1 TTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCC
* *
83774938 GAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
66 GAAGGCAATTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
*
83774995 TTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCC
1 TTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCC
*
83775060 GAAGGCAATTGTGCGAGTTGATATATCCGGGCTAAGACCCTAAGGCATTCGTGCGAG
66 GAAGGCAATTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
* ** *
83775117 TTG-C-TATACCCGGATTAAGACCCGAAGGCAATTGTGC
1 TTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGC
83775154 TTGTGGTTAT
Statistics
Matches: 149, Mismatches: 9, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
120 29 0.19
121 5 0.03
122 115 0.77
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.24
Consensus pattern (122 bp):
TTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCC
GAAGGCAATTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAG
Found at i:83786310 original size:57 final size:57
Alignment explanation
Indices: 83786249--83786369 Score: 147
Period size: 57 Copynumber: 2.1 Consensus size: 57
83786239 AGTACGGATG
* *
83786249 GGTAATCTAGATC-AAGCTCT-TTAGAGCATATGTCATAAAAAGGATTTACCCTGGACT
1 GGTAATCTAGA-CGAAGCTCTATT-GAGAATATATCATAAAAAGGATTTACCCTGGACT
* * * * *
83786306 GGTAATCTTGACGAAGCTCTATTGAGAATATATTATAGACAGGATTTAGCCTGGACT
1 GGTAATCTAGACGAAGCTCTATTGAGAATATATCATAAAAAGGATTTACCCTGGACT
83786363 GGTAATC
1 GGTAATC
83786370 CTATTGTCTA
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
56 1 0.02
57 52 0.95
58 2 0.04
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31
Consensus pattern (57 bp):
GGTAATCTAGACGAAGCTCTATTGAGAATATATCATAAAAAGGATTTACCCTGGACT
Found at i:83790651 original size:14 final size:14
Alignment explanation
Indices: 83790632--83790661 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
83790622 TGATTGTTTT
83790632 TAATCTAATTTAAC
1 TAATCTAATTTAAC
83790646 TAATCTAATTTAAC
1 TAATCTAATTTAAC
83790660 TA
1 TA
83790662 CGAATGCAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.13, G:0.00, T:0.43
Consensus pattern (14 bp):
TAATCTAATTTAAC
Found at i:83793007 original size:16 final size:17
Alignment explanation
Indices: 83792976--83793008 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
83792966 TTCATAAGCA
*
83792976 TATATCACTCATTTCAT
1 TATATCAATCATTTCAT
83792993 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
83793009 GCTCCATCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.33, C:0.18, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:83793358 original size:46 final size:46
Alignment explanation
Indices: 83793288--83793422 Score: 189
Period size: 46 Copynumber: 2.9 Consensus size: 46
83793278 TTTGACATGA
* * * ***
83793288 TGCCATAGTGTCTTTCAACTATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACAATGGTCTTACACATTTCATATCACGT
* *
83793334 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACAATGGTCTTACACATTTCATATCACGT
*
83793380 TGCCATGGTATCTTTCAACAATGGTCTTACATATTTCATATCA
1 TGCCATGGTATCTTTCAACAATGGTCTTACACATTTCATATCA
83793423 GAGAGCACAC
Statistics
Matches: 80, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.24, C:0.22, G:0.14, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACAATGGTCTTACACATTTCATATCACGT
Found at i:83795460 original size:123 final size:123
Alignment explanation
Indices: 83795241--83795488 Score: 487
Period size: 123 Copynumber: 2.0 Consensus size: 123
83795231 TCAATAATAA
83795241 CAAACTTAAAAACATATTGAAATCTTGATATACTTACCTTGTTCTATTGATACTAATCTTTAACT
1 CAAACTTAAAAACATATTGAAATCTTGATATACTTACCTTGTTCTATTGATACTAATCTTTAACT
83795306 TGATTTTCTCTCTCCTCCAGCTTCTATTTCTTGAATCCAACTTGATATTCTAACTCCC
66 TGATTTTCTCTCTCCTCCAGCTTCTATTTCTTGAATCCAACTTGATATTCTAACTCCC
83795364 CAAACTTAAAAACATATTGAAATCTTGATATACTTACCTTGTTCTATTGATACTAATCTTTAACT
1 CAAACTTAAAAACATATTGAAATCTTGATATACTTACCTTGTTCTATTGATACTAATCTTTAACT
*
83795429 TGATTTTCTCTCTCCTTCAGCTTCTATTTCTTGAATCCAACTTGATATTCTAACTCCC
66 TGATTTTCTCTCTCCTCCAGCTTCTATTTCTTGAATCCAACTTGATATTCTAACTCCC
83795487 CA
1 CA
83795489 TGGTCTCCTT
Statistics
Matches: 124, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
123 124 1.00
ACGTcount: A:0.29, C:0.23, G:0.06, T:0.42
Consensus pattern (123 bp):
CAAACTTAAAAACATATTGAAATCTTGATATACTTACCTTGTTCTATTGATACTAATCTTTAACT
TGATTTTCTCTCTCCTCCAGCTTCTATTTCTTGAATCCAACTTGATATTCTAACTCCC
Found at i:83795703 original size:11 final size:11
Alignment explanation
Indices: 83795687--83795725 Score: 69
Period size: 11 Copynumber: 3.5 Consensus size: 11
83795677 ACTAAATAAT
83795687 TAATAATAAAA
1 TAATAATAAAA
*
83795698 TAATAATGAAA
1 TAATAATAAAA
83795709 TAATAATAAAA
1 TAATAATAAAA
83795720 TAATAA
1 TAATAA
83795726 AATATCTTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (11 bp):
TAATAATAAAA
Found at i:83795712 original size:19 final size:19
Alignment explanation
Indices: 83795688--83795729 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
83795678 CTAAATAATT
*
83795688 AATAATAAAATAATAATGA
1 AATAATAAAATAATAATAA
83795707 AATAATAATAA-AATAATAA
1 AATAATAA-AATAATAATAA
83795726 AATA
1 AATA
83795730 TCTTCTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 19 0.90
20 2 0.10
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.26
Consensus pattern (19 bp):
AATAATAAAATAATAATAA
Found at i:83795745 original size:3 final size:3
Alignment explanation
Indices: 83795681--83795729 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
83795671 TTTTATACTA
*
83795681 AAT AATT AAT AAT AA- AAT AAT AAT GA- AAT AAT AAT AA- AAT AAT
1 AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
83795724 AA- AAT A
1 AAT AAT A
83795730 TCTTCTTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
2 7 0.18
3 29 0.74
4 3 0.08
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:83795758 original size:20 final size:21
Alignment explanation
Indices: 83795699--83795774 Score: 59
Period size: 19 Copynumber: 3.7 Consensus size: 21
83795689 ATAATAAAAT
* *
83795699 AATAATGAAATA-ATAA-TAA
1 AATAATAAAATATCTAATTAA
**
83795718 AATAATAAAATATCTTCTTAA
1 AATAATAAAATATCTAATTAA
*
83795739 AATAAT-ATATATCTAATTAAA
1 AATAATAAAATATCTAATT-AA
*
83795760 TAATCATAAAATATC
1 -AATAATAAAATATC
83795775 ATCAACATCA
Statistics
Matches: 43, Mismatches: 9, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
19 11 0.26
20 10 0.23
21 11 0.26
22 5 0.12
23 6 0.14
ACGTcount: A:0.58, C:0.07, G:0.01, T:0.34
Consensus pattern (21 bp):
AATAATAAAATATCTAATTAA
Found at i:83797312 original size:27 final size:27
Alignment explanation
Indices: 83797262--83797349 Score: 115
Period size: 27 Copynumber: 3.1 Consensus size: 27
83797252 AGCATGGCTG
83797262 CCAGATACAGATATTTTGTGGCAGTGCCA
1 CCAGA-ACAGATA-TTTGTGGCAGTGCCA
* *
83797291 CCAGAACAGATATATGTGGCAGGGCCA
1 CCAGAACAGATATTTGTGGCAGTGCCA
83797318 CCAGAACAGATAATTTGTGGCA-TAGCCA
1 CCAGAACAGAT-ATTTGTGGCAGT-GCCA
83797346 CCAG
1 CCAG
83797350 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
27 24 0.45
28 24 0.45
29 5 0.09
ACGTcount: A:0.32, C:0.23, G:0.25, T:0.20
Consensus pattern (27 bp):
CCAGAACAGATATTTGTGGCAGTGCCA
Found at i:83797502 original size:28 final size:28
Alignment explanation
Indices: 83797455--83797519 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
83797445 AAATTAACCC
*
83797455 TAGGGGTATAGAGGTCATTTTGCATACA
1 TAGGGGTATAGAGGTAATTTTGCATACA
83797483 TAGGGGTATA-ATGGTAATTTTGCATACA
1 TAGGGGTATAGA-GGTAATTTTGCATACA
83797511 TAGGGGTAT
1 TAGGGGTAT
83797520 TCTAGTACAT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.29, C:0.08, G:0.29, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAGAGGTAATTTTGCATACA
Found at i:83801052 original size:37 final size:37
Alignment explanation
Indices: 83800993--83801101 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
83800983 AGCTCAGATG
* *
83800993 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
83801030 AAATCTCCACACGTAGTCATCGGGTCTTACCTGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
83801067 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
83801102 ATATATTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:83801300 original size:48 final size:48
Alignment explanation
Indices: 83801242--83801773 Score: 911
Period size: 48 Copynumber: 11.0 Consensus size: 48
83801232 ATATACACAC
* * * *
83801242 ATCTCCTACATATTTCACACTAGCCCTTCGGCTTTACCACATATACGT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
83801290 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
83801338 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
83801388 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
83801436 ATCCCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
83801484 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
83801532 ATCCCATACATATTTCACATTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
83801580 ATCTCATACATATTTCACATTAGCCACTCCGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
83801628 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
83801676 ATCCCATACATATTTCACATTAACCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
83801724 ATCCCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
83801772 AT
1 AT
83801774 ATTTATCTTG
Statistics
Matches: 461, Mismatches: 21, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
48 415 0.90
50 46 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:83805904 original size:6 final size:6
Alignment explanation
Indices: 83805869--83805903 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
83805859 AGGTTTCCAA
*
83805869 AAATGG AAATGG AAATGG AAATGG AAATGA AAATG
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAATG
83805904 ATCCATTTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.54, C:0.00, G:0.29, T:0.17
Consensus pattern (6 bp):
AAATGG
Found at i:83808499 original size:184 final size:184
Alignment explanation
Indices: 83808190--83808558 Score: 632
Period size: 184 Copynumber: 2.0 Consensus size: 184
83808180 CAGATAACCA
* *
83808190 TCAAGGAGGTTGTTAGCAATCTTTGTCAGCATGTTGGGTGGGCTGAAACCACACTCATTCAGTCA
1 TCAAGGAGGTTGTTAACAATCTTTGTCAGCATGTTGGGTAGGCTGAAACCACACTCATTCAGTCA
* *
83808255 AGGCAAGTATCGATATATTTTAGAGATGGGTGCTTAAATGAGGATGTTAATCTTGTTGATTATAA
66 AGGCAAGTATCGATATAGTTTAGAGATGGATGCTTAAATGAGGATGTTAATCTTGTTGATTATAA
* * *
83808320 GACTAATCGAGGGTCTTGATTGGATATAGGTTGGTGGTCGTGGTTTTCGGCGCG
131 GACTAATCGAGGGTCTTGATTAGATATAGGTTGGTGGTCGTGCTTTTCAGCGCG
*
83808374 TCAAGGAGGTTGTTAACAATCTTTGTCAGCGTGTTGGGTAGGCTGAAACCACACTCATTCAGTCA
1 TCAAGGAGGTTGTTAACAATCTTTGTCAGCATGTTGGGTAGGCTGAAACCACACTCATTCAGTCA
*
83808439 AGGCAAGTATC-AGTATAGTTTAGAGATGGATGCTTAAATGAGGGTGTTAATCTTGTTGATTATA
66 AGGCAAGTATCGA-TATAGTTTAGAGATGGATGCTTAAATGAGGATGTTAATCTTGTTGATTATA
*
83808503 AGACTAATTGAGGGTCTTGATTAGATATAGGTTGGTGGTCGTGCTTTTCAGCGCG
130 AGACTAATCGAGGGTCTTGATTAGATATAGGTTGGTGGTCGTGCTTTTCAGCGCG
83808558 T
1 T
83808559 TCTCGTAAAT
Statistics
Matches: 174, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
183 1 0.01
184 173 0.99
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.33
Consensus pattern (184 bp):
TCAAGGAGGTTGTTAACAATCTTTGTCAGCATGTTGGGTAGGCTGAAACCACACTCATTCAGTCA
AGGCAAGTATCGATATAGTTTAGAGATGGATGCTTAAATGAGGATGTTAATCTTGTTGATTATAA
GACTAATCGAGGGTCTTGATTAGATATAGGTTGGTGGTCGTGCTTTTCAGCGCG
Found at i:83808625 original size:17 final size:17
Alignment explanation
Indices: 83808605--83808643 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
83808595 GTAAAACTAC
*
83808605 AAAAGGCTGAAAAGCTG
1 AAAAGACTGAAAAGCTG
* *
83808622 AAAAAACTGAAAGGCTG
1 AAAAGACTGAAAAGCTG
83808639 AAAAG
1 AAAAG
83808644 CCAGAAAGTG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.54, C:0.10, G:0.26, T:0.10
Consensus pattern (17 bp):
AAAAGACTGAAAAGCTG
Found at i:83822792 original size:20 final size:20
Alignment explanation
Indices: 83822767--83822805 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
83822757 CGTAGAGGTA
83822767 GGCTTGGGACACGCCCGTTT
1 GGCTTGGGACACGCCCGTTT
83822787 GGCTTGGGACACGCCCGTT
1 GGCTTGGGACACGCCCGTT
83822806 CTTCAGCCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.10, C:0.31, G:0.36, T:0.23
Consensus pattern (20 bp):
GGCTTGGGACACGCCCGTTT
Found at i:83824126 original size:42 final size:42
Alignment explanation
Indices: 83824064--83824216 Score: 139
Period size: 42 Copynumber: 3.6 Consensus size: 42
83824054 TAAGATGCCA
* * * *
83824064 ATGCCATGTCCCAGACATGGTCTTATATCAGATCTCGCATCG
1 ATGCCATATCCCAAATATGGTCTTATATCAGATCTCACATCG
**
83824106 ATGCCATATCCCAAATATGGTCTTATA-C-GAATTCTCATTTCG
1 ATGCCATATCCCAAATATGGTCTTATATCAG-A-TCTCACATCG
* * * * *
83824148 ATGCCATGTCCCAAATATGGTCTTACATGAGATCTCATATCA
1 ATGCCATATCCCAAATATGGTCTTATATCAGATCTCACATCG
* ** *
83824190 ATGTCATATCCCAGTTATGGTTTTATA
1 ATGCCATATCCCAAATATGGTCTTATA
83824217 CGGGATCTCA
Statistics
Matches: 90, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
40 1 0.01
41 2 0.02
42 85 0.94
43 1 0.01
44 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.34
Consensus pattern (42 bp):
ATGCCATATCCCAAATATGGTCTTATATCAGATCTCACATCG
Found at i:83824227 original size:84 final size:84
Alignment explanation
Indices: 83824064--83824218 Score: 211
Period size: 84 Copynumber: 1.8 Consensus size: 84
83824054 TAAGATGCCA
* * * *
83824064 ATGCCATGTCCCAGACATGGTCTTATATCAGATCTCGCATCGATGCCATATCCCAAATATGGTCT
1 ATGCCATGTCCCAAACATGGTCTTACATCAGATCTCACATCAATGCCATATCCCAAATATGGTCT
83824129 TATACGAATTCTCATTTCG
66 TATACGAATTCTCATTTCG
* * * * ** *
83824148 ATGCCATGTCCCAAATATGGTCTTACATGAGATCTCATATCAATGTCATATCCCAGTTATGGTTT
1 ATGCCATGTCCCAAACATGGTCTTACATCAGATCTCACATCAATGCCATATCCCAAATATGGTCT
83824213 TATACG
66 TATACG
83824219 GGATCTCATC
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
84 60 1.00
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.34
Consensus pattern (84 bp):
ATGCCATGTCCCAAACATGGTCTTACATCAGATCTCACATCAATGCCATATCCCAAATATGGTCT
TATACGAATTCTCATTTCG
Found at i:83829421 original size:47 final size:44
Alignment explanation
Indices: 83829309--83829432 Score: 133
Period size: 47 Copynumber: 2.7 Consensus size: 44
83829299 TCACTTGTGT
*
83829309 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATAA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGG-C-CATTAGAA
* * *
83829355 GAGCCAGTGTAATACCATGTCTGGGATATGGCATCGG-CATTGAGACGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCATT-AGA--A
*
83829403 GTGCTAGTGTAAGACATGTCTGGGACATGC
1 GAGCTAGTGTAAGACATGTCTGGGACATGC
83829433 GTCGACCTTG
Statistics
Matches: 65, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
45 4 0.06
46 16 0.25
47 26 0.40
48 19 0.29
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (44 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATTAGAA
Found at i:83837303 original size:68 final size:67
Alignment explanation
Indices: 83837229--83837405 Score: 173
Period size: 67 Copynumber: 2.6 Consensus size: 67
83837219 CATCATGTGT
* * * *
83837229 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
83837291 ATGTAG
62 ATGTAG
** * *
83837297 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGCTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
83837362 AG
66 AG
* * * * *
83837364 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATGGGTGG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGG
83837406 TACTGAGTGT
Statistics
Matches: 93, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 20 0.22
65 7 0.08
66 21 0.23
67 32 0.34
68 13 0.14
ACGTcount: A:0.32, C:0.17, G:0.30, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:83837334 original size:64 final size:64
Alignment explanation
Indices: 83837253--83837436 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
83837243 AGACATTATG
* *
83837253 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
83837317 ATGTAGCTAGGTCGCATGCGTGGCTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
83837382 AA
63 AA
* * * *
83837384 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAG-ACAAGAGAGC
83837437 CGAACTCTAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 7 0.07
66 18 0.18
67 32 0.33
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:83840315 original size:26 final size:26
Alignment explanation
Indices: 83840265--83840324 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
83840255 ATAATACAGC
*
83840265 TGCATTGATAATATATACGTTTGAAT
1 TGCATTGATAATATATACGTATGAAT
83840291 TGCATTGA-AATTATTATA-GTATGAAT
1 TGCATTGATAA-TA-TATACGTATGAAT
83840317 TGC-TTGAT
1 TGCATTGAT
83840325 TATGGAAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
25 6 0.20
26 20 0.67
27 4 0.13
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.43
Consensus pattern (26 bp):
TGCATTGATAATATATACGTATGAAT
Found at i:83842199 original size:25 final size:25
Alignment explanation
Indices: 83842165--83842216 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
83842155 TGCCTCAGAC
*
83842165 TTGGTCTTACATGATGTAGTATTCA
1 TTGGTCTTACATGATATAGTATTCA
*
83842190 TTGGTCTTACATGATATAGTCTTCA
1 TTGGTCTTACATGATATAGTATTCA
83842215 TT
1 TT
83842217 TTCCACGGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.23, C:0.13, G:0.17, T:0.46
Consensus pattern (25 bp):
TTGGTCTTACATGATATAGTATTCA
Found at i:83844053 original size:27 final size:27
Alignment explanation
Indices: 83844023--83844087 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
83844013 GGGCGTATTC
*
83844023 GTCATTTTACCATATAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
83844050 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
83844077 GTCTTTTTACC
1 GTCATTTTACC
83844088 TACTAGAGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:83844212 original size:29 final size:26
Alignment explanation
Indices: 83844141--83844222 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 26
83844131 GTAAATCTAC
*
83844141 AAACCAAGGGTATTTCAATAATTTTGT
1 AAACCAAGGGTATTTCTATAATTTT-T
*
83844168 AAACCAATGGTATTTCTATAATTTTT
1 AAACCAAGGGTATTTCTATAATTTTT
* *
83844194 AAAAAGTCAAGGGTATTTCTGTAATTTTT
1 --AAA-CCAAGGGTATTTCTATAATTTTT
83844223 TAAATTAGGG
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
26 1 0.02
27 23 0.49
28 3 0.06
29 20 0.43
ACGTcount: A:0.35, C:0.10, G:0.13, T:0.41
Consensus pattern (26 bp):
AAACCAAGGGTATTTCTATAATTTTT
Found at i:83844248 original size:26 final size:27
Alignment explanation
Indices: 83844204--83844326 Score: 117
Period size: 27 Copynumber: 4.6 Consensus size: 27
83844194 AAAAAGTCAA
** *
83844204 GGGTATTTCT-GTAATTTTTTAAATTAG
1 GGGTATTT-TGGTAATTTTACAAACTAG
*
83844231 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTTGGTAATTTTACAAACTAG
* * * *
83844257 AGGGTATTTCGATAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAACTAG
* *
83844285 TGGT-TTTCGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACTAG
83844311 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
83844327 CTATCCTACA
Statistics
Matches: 78, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
26 25 0.32
27 52 0.67
28 1 0.01
ACGTcount: A:0.28, C:0.08, G:0.21, T:0.43
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAG
Found at i:83844342 original size:80 final size:80
Alignment explanation
Indices: 83844209--83844359 Score: 189
Period size: 80 Copynumber: 1.9 Consensus size: 80
83844199 GTCAAGGGTA
* ** * * **
83844209 TTTCTGTAATTTTTTAAATTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTC-GATAAT
1 TTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTACAAACAGAGGGTATTTCAG-TAAT
83844273 TTCACAAACCAGTGGT
65 TTCACAAACCAGTGGT
**
83844289 TTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTATCCTACAG-GGGTATTTCAGTAAT
1 TTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTA-CAAACAGAGGGTATTTCAGTAAT
83844353 TTCACAA
65 TTCACAA
83844360 TCTTGGGTAA
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
80 56 0.93
81 4 0.07
ACGTcount: A:0.28, C:0.11, G:0.19, T:0.42
Consensus pattern (80 bp):
TTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTCTACAAACAGAGGGTATTTCAGTAATT
TCACAAACCAGTGGT
Found at i:83844377 original size:26 final size:27
Alignment explanation
Indices: 83844348--83844407 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
83844338 GGGTATTTCA
* *
83844348 GTAATTTCACAATCT-TGGGTAAAATG
1 GTAATTTCACAAACTGAGGGTAAAATG
***
83844374 GTAATTTTGTAAACTGAGGGTAAAATG
1 GTAATTTCACAAACTGAGGGTAAAATG
83844401 GTAATTT
1 GTAATTT
83844408 TGTAAATCGA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 11 0.39
27 17 0.61
ACGTcount: A:0.35, C:0.07, G:0.22, T:0.37
Consensus pattern (27 bp):
GTAATTTCACAAACTGAGGGTAAAATG
Found at i:83844397 original size:27 final size:27
Alignment explanation
Indices: 83844364--83844501 Score: 179
Period size: 27 Copynumber: 5.1 Consensus size: 27
83844354 TCACAATCTT
83844364 GGGTAAAATGGTAATTTTGTAAA-CTGA
1 GGGTAAAATGGTAATTTTGTAAATC-GA
83844391 GGGTAAAATGGTAATTTTGTAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
**
83844418 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
* * * *
83844445 GGGTGAAACGGTAATTCTATAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
* **
83844472 GGGTAAAATGGTAATTCTACAAATCGA
1 GGGTAAAATGGTAATTTTGTAAATCGA
83844499 GGG
1 GGG
83844502 CATTTCAGTA
Statistics
Matches: 101, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
27 100 0.99
28 1 0.01
ACGTcount: A:0.38, C:0.07, G:0.26, T:0.29
Consensus pattern (27 bp):
GGGTAAAATGGTAATTTTGTAAATCGA
Found at i:83846847 original size:31 final size:30
Alignment explanation
Indices: 83846808--83846890 Score: 132
Period size: 31 Copynumber: 2.7 Consensus size: 30
83846798 TCAGTCTCGA
83846808 CATA-TACTGTGCCGAAGCCTTTTCATAAAT
1 CATATTACTG-GCCGAAGCCTTTTCATAAAT
83846838 CATATTACTGGGCCGAAGCCTTTTCATAAAT
1 CATATTACT-GGCCGAAGCCTTTTCATAAAT
*
83846869 CATATCACTGGCCGAAGCCTTT
1 CATATTACTGGCCGAAGCCTTT
83846891 ACTGTAAGGG
Statistics
Matches: 50, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
30 17 0.34
31 32 0.64
32 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (30 bp):
CATATTACTGGCCGAAGCCTTTTCATAAAT
Found at i:83847127 original size:25 final size:24
Alignment explanation
Indices: 83847099--83847179 Score: 85
Period size: 25 Copynumber: 3.2 Consensus size: 24
83847089 GGAGGCCTAG
*
83847099 CCTTTTTTAATAACTGGGGCAAAGC
1 CCTTTTCT-ATAACTGGGGCAAAGC
83847124 CC-TTTCTGATAAACTGGGGCAAAGC
1 CCTTTTCT-AT-AACTGGGGCAAAGC
*
83847149 CCTTTTCGGTA-AACTGGGGCAGAGC
1 CCTTTTC--TATAACTGGGGCAAAGC
83847174 CCTTTT
1 CCTTTT
83847180 AGCACTTCCT
Statistics
Matches: 49, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
24 6 0.12
25 37 0.76
26 4 0.08
27 1 0.02
28 1 0.02
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.30
Consensus pattern (24 bp):
CCTTTTCTATAACTGGGGCAAAGC
Found at i:83848010 original size:27 final size:26
Alignment explanation
Indices: 83847980--83848057 Score: 68
Period size: 27 Copynumber: 2.9 Consensus size: 26
83847970 GGGCGTATTC
83847980 GTCATTTTACCATATAAGGGTATTACG
1 GTCATTTTACC-TATAAGGGTATTACG
* * *
83848007 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTA-CCTATAAGGG-TATTACG
* *
83848034 GTCTTTTTACCTATTAGAGGTATT
1 GTCATTTTACCTATAAG-GGTATT
83848058 TTAGTCATTT
Statistics
Matches: 39, Mismatches: 8, Indels: 8
0.71 0.15 0.15
Matches are distributed among these distances:
26 6 0.15
27 30 0.77
28 3 0.08
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.38
Consensus pattern (26 bp):
GTCATTTTACCTATAAGGGTATTACG
Found at i:83848257 original size:110 final size:108
Alignment explanation
Indices: 83848075--83848284 Score: 251
Period size: 110 Copynumber: 1.9 Consensus size: 108
83848065 TTTCATCCTA
* ***
83848075 CAAGGGTGTTTTGGTAAATCTACAAACTAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTT
1 CAAGGGTATTTTGGTAAATCTACAAACTAAGGGTATTTCAGTAATTTCACAAACCAATGGTATTT
* * *
83848140 CTATAATTTTTAGAAAGTCAAGGGTATTTTTGTAATTTTGTAAAT
66 CTATAA-TTTTACAAACT-AAGGGTATTTTGGTAATTTTGTAAAT
* * * * * *
83848185 CAAGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTT
1 CAAGGGTATTTTGGTAAATCTACAAACTAAGGGTATTTCAGTAATTTCACAAACCAATGGTATTT
* *
83848250 -TGGTAATTTTACAAACTAGGGGTATTTTGGTAATT
66 CT-ATAATTTTACAAACTAAGGGTATTTTGGTAATT
83848285 CTATCCTACA
Statistics
Matches: 84, Mismatches: 15, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
108 16 0.19
109 10 0.12
110 58 0.69
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (108 bp):
CAAGGGTATTTTGGTAAATCTACAAACTAAGGGTATTTCAGTAATTTCACAAACCAATGGTATTT
CTATAATTTTACAAACTAAGGGTATTTTGGTAATTTTGTAAAT
Found at i:83848299 original size:27 final size:27
Alignment explanation
Indices: 83848076--83848311 Score: 131
Period size: 27 Copynumber: 8.7 Consensus size: 27
83848066 TTCATCCTAC
* *
83848076 AAGGGTGTTTTGGTAAATCTACAAACT
1 AAGGGTATTTTGGTAATTCTACAAACT
** * ** *
83848103 AAGGGTATTTCAGTAATTTTGTAAACC
1 AAGGGTATTTTGGTAATTCTACAAACT
* * * * *
83848130 AATGGTATTTCT-ATAATTTTTAGAAAGT
1 AAGGGTATTT-TGGTAA-TTCTACAAACT
* * **
83848158 CAAGGGTATTTTTGTAATTTTGTAAA-T
1 -AAGGGTATTTTGGTAATTCTACAAACT
* *
83848185 CAAGGGTATTTTGGTAATTTTACAAATT
1 -AAGGGTATTTTGGTAATTCTACAAACT
* *
83848213 GAGGGTATTTCGGTAATT-TCACAAAC-
1 AAGGGTATTTTGGTAATTCT-ACAAACT
* *
83848239 CAGTGGTATTTTGGTAATTTTACAAACT
1 AAG-GGTATTTTGGTAATTCTACAAACT
* **
83848267 AGGGGTATTTTGGTAATTCTATCCTAC-
1 AAGGGTATTTTGGTAATTCTA-CAAACT
*
83848294 AAGGGTATTTTAGTAATT
1 AAGGGTATTTTGGTAATT
83848312 TCACAATCGA
Statistics
Matches: 165, Mismatches: 34, Indels: 20
0.75 0.16 0.09
Matches are distributed among these distances:
26 3 0.02
27 129 0.78
28 21 0.13
29 12 0.07
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTCTACAAACT
Found at i:83848301 original size:54 final size:53
Alignment explanation
Indices: 83848074--83848326 Score: 158
Period size: 54 Copynumber: 4.7 Consensus size: 53
83848064 ATTTCATCCT
* * * * ***
83848074 ACAAGGGTGTTTTGGTAAATCTACAAACTA-AGGGTATTTCAGTAATTTTGTAA
1 ACAAGGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTCGGTAATTTCACAA
* * * ** ***
83848127 ACCAATGGTATTTCT-ATAATTTTTAGAAAGTCA-AGGGTATTTTTGTAATTTTGTAA
1 A-CAAGGGTATTT-TGGTAA-TTTTACAAA-T-AGAGGGTATTTCGGTAATTTCACAA
*
83848183 ATCAAGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAA
1 A-CAAGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGGTAATTTCACAA
* * **
83848237 ACCAGTGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAA-TTCTATCCT
1 ACAAG-GGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTCGGTAATTTC-A-CAA
* * *
83848292 ACAAGGGTATTTTAGTAATTTCAC-AATCGAGGGTA
1 ACAAGGGTATTTTGGTAATTTTACAAATAGAGGGTA
83848327 AAACAGTAAT
Statistics
Matches: 161, Mismatches: 28, Indels: 22
0.76 0.13 0.10
Matches are distributed among these distances:
52 2 0.01
53 14 0.09
54 85 0.53
55 24 0.15
56 36 0.22
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (53 bp):
ACAAGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGGTAATTTCACAA
Found at i:83848364 original size:27 final size:27
Alignment explanation
Indices: 83848316--83848445 Score: 147
Period size: 27 Copynumber: 4.8 Consensus size: 27
83848306 GTAATTTCAC
* **
83848316 AATCGAGGGTAAAACAGTAATTTTGTA
1 AATCGAAGGTAAAATGGTAATTTTGTA
*
83848343 AA-CTGAAGGTTAAATGGTAATTTTGTA
1 AATC-GAAGGTAAAATGGTAATTTTGTA
* *
83848370 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAAGGTAAAATGGTAATTTTGTA
* *
83848397 AATC-AAGGGTGAAATGGTAATTTTATA
1 AATCGAA-GGTAAAATGGTAATTTTGTA
*
83848424 AATCGAGGGTAAAATGGTAATT
1 AATCGAAGGTAAAATGGTAATT
83848446 CTACTAATTG
Statistics
Matches: 86, Mismatches: 13, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
26 2 0.02
27 82 0.95
28 2 0.02
ACGTcount: A:0.39, C:0.05, G:0.24, T:0.32
Consensus pattern (27 bp):
AATCGAAGGTAAAATGGTAATTTTGTA
Found at i:83848443 original size:54 final size:54
Alignment explanation
Indices: 83848316--83848445 Score: 199
Period size: 54 Copynumber: 2.4 Consensus size: 54
83848306 GTAATTTCAC
* * * *
83848316 AATCGAGGGTAAAACAGTAATTTTGTAAACTGAAGGTTAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTAAACTCAAGGTGAAATGGTAATTTTATA
83848370 AATCGAGGGTAAAACGGTAATTTTGTAAA-TCAAGGGTGAAATGGTAATTTTATA
1 AATCGAGGGTAAAACGGTAATTTTGTAAACTCAA-GGTGAAATGGTAATTTTATA
*
83848424 AATCGAGGGTAAAATGGTAATT
1 AATCGAGGGTAAAACGGTAATT
83848446 CTACTAATTG
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
53 3 0.04
54 67 0.96
ACGTcount: A:0.39, C:0.05, G:0.24, T:0.32
Consensus pattern (54 bp):
AATCGAGGGTAAAACGGTAATTTTGTAAACTCAAGGTGAAATGGTAATTTTATA
Found at i:83849622 original size:31 final size:31
Alignment explanation
Indices: 83849577--83849659 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
83849567 TCAGTCTCGA
*
83849577 CATAT-ACTGCGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
83849607 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
83849638 CATATCACT-GGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
83849660 ACTGTAAGGG
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
30 18 0.35
31 33 0.65
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:83849907 original size:25 final size:25
Alignment explanation
Indices: 83849879--83849948 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
83849869 CTCTTTTAAT
*
83849879 AACTGGGGTAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
83849904 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
83849929 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
83849949 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 37 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:83851846 original size:29 final size:29
Alignment explanation
Indices: 83851811--83851884 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
83851801 GTTGTGAGAT
* *
83851811 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
83851840 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
83851869 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
83851885 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:83858214 original size:18 final size:18
Alignment explanation
Indices: 83858191--83858229 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
83858181 TATTTTTTTT
83858191 TAATGAAAATAGACTCAC
1 TAATGAAAATAGACTCAC
*
83858209 TAATGAAAATAGGCTCAC
1 TAATGAAAATAGACTCAC
83858227 TAA
1 TAA
83858230 GGAATCTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.49, C:0.15, G:0.13, T:0.23
Consensus pattern (18 bp):
TAATGAAAATAGACTCAC
Found at i:83862528 original size:40 final size:41
Alignment explanation
Indices: 83862459--83862553 Score: 122
Period size: 40 Copynumber: 2.4 Consensus size: 41
83862449 ACTAAGTTTG
* * *
83862459 GCACTTAGTGTGCG-TTTTGAGATAGCTTCGGCTATATATA
1 GCACTTAGTGTGCGAATTAGAGATAACTTCGGCTATATATA
* *
83862499 GCACTTAGTGTGCGAATTAGA-ATAACTTCGGCTATATGTG
1 GCACTTAGTGTGCGAATTAGAGATAACTTCGGCTATATATA
*
83862539 GCACTAAGTGTGCGA
1 GCACTTAGTGTGCGA
83862554 TACTGAGATA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
40 44 0.92
41 4 0.08
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (41 bp):
GCACTTAGTGTGCGAATTAGAGATAACTTCGGCTATATATA
Found at i:83863096 original size:15 final size:16
Alignment explanation
Indices: 83863069--83863100 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
83863059 TAGTGTTACA
83863069 GTTGAATAAAGATAAT
1 GTTGAATAAAGATAAT
83863085 GTTGAA-AAAGATAAT
1 GTTGAATAAAGATAAT
83863100 G
1 G
83863101 CTCAGAACAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.50, C:0.00, G:0.22, T:0.28
Consensus pattern (16 bp):
GTTGAATAAAGATAAT
Found at i:83867891 original size:40 final size:40
Alignment explanation
Indices: 83867804--83867964 Score: 119
Period size: 44 Copynumber: 3.9 Consensus size: 40
83867794 TGTGTGTTTC
* * * *
83867804 GAGATAGCTTCGGCTATATATAGCACTTAGTGTGCGA-AT
1 GAGATAACTTCGGCTATATGTGGCACTAAGTGTGCGATAT
*
83867843 TAGAATAACTTCGGCTATATGTGGCA-TAAGTGTGCGATACT
1 GAG-ATAACTTCGGCTATATGTGGCACTAAGTGTGCGATA-T
* * *
83867884 GAGATAACTTAGGTTTAATGTGATGGCACTAAGTGTGCGATAT
1 GAGATAACTTCGG-CT-ATATG-TGGCACTAAGTGTGCGATAT
** * *
83867927 CGTTATAGCTTCGGCTAATCATTTTGGCACTAAGTGTG
1 -GAGATAACTTCGGCT-AT-A-TGTGGCACTAAGTGTG
83867965 TAAGTTCCTC
Statistics
Matches: 96, Mismatches: 16, Indels: 15
0.76 0.13 0.12
Matches are distributed among these distances:
39 12 0.12
40 29 0.30
41 4 0.04
42 4 0.04
43 10 0.10
44 36 0.38
45 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.33
Consensus pattern (40 bp):
GAGATAACTTCGGCTATATGTGGCACTAAGTGTGCGATAT
Found at i:83870212 original size:56 final size:56
Alignment explanation
Indices: 83870126--83870245 Score: 240
Period size: 56 Copynumber: 2.1 Consensus size: 56
83870116 ACAAGGGATG
83870126 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
83870182 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
83870238 ATGGGCAA
1 ATGGGCAA
83870246 TAAACTAATA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 64 1.00
ACGTcount: A:0.46, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:83871475 original size:39 final size:40
Alignment explanation
Indices: 83871375--83871559 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
83871365 TCGAATGATG
* * *
83871375 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
83871414 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
83871455 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
83871494 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
83871533 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
83871560 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:83871581 original size:79 final size:79
Alignment explanation
Indices: 83871428--83871582 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
83871418 GGACTAAGAT
** **
83871428 CCGAAGGCATTTGTGCGAGTTACTAATTTCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
83871493 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
83871507 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
83871570 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
83871583 ATTGCGAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.61
80 24 0.36
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:83888979 original size:48 final size:48
Alignment explanation
Indices: 83888923--83889018 Score: 165
Period size: 48 Copynumber: 2.0 Consensus size: 48
83888913 AGCAGCATGT
* *
83888923 GATATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
1 GATATGTGATCCAATGTAAGACCATATCTGGGACATGGCATTGGCATC
*
83888971 GATATGTGATCCAATGTAAGACCATATCTGGGATATGGCATTGGCATC
1 GATATGTGATCCAATGTAAGACCATATCTGGGACATGGCATTGGCATC
83889019 CTACCATGTA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (48 bp):
GATATGTGATCCAATGTAAGACCATATCTGGGACATGGCATTGGCATC
Found at i:83889993 original size:11 final size:11
Alignment explanation
Indices: 83889972--83890013 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
83889962 ATAAGAATGT
83889972 TTGATGATTAAG
1 TTGA-GATTAAG
83889984 TTGAGATTAA-
1 TTGAGATTAAG
*
83889994 TTG-GTTTAAG
1 TTGAGATTAAG
83890004 TTGAGATTAA
1 TTGAGATTAA
83890014 TTGGTAAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
9 5 0.19
10 6 0.23
11 11 0.42
12 4 0.15
ACGTcount: A:0.33, C:0.00, G:0.24, T:0.43
Consensus pattern (11 bp):
TTGAGATTAAG
Found at i:83890004 original size:20 final size:20
Alignment explanation
Indices: 83889979--83890018 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
83889969 TGTTTGATGA
83889979 TTAAGTTGAGATTAATTGGT
1 TTAAGTTGAGATTAATTGGT
83889999 TTAAGTTGAGATTAATTGGT
1 TTAAGTTGAGATTAATTGGT
83890019 AAGTTGATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.00, G:0.25, T:0.45
Consensus pattern (20 bp):
TTAAGTTGAGATTAATTGGT
Found at i:83890023 original size:18 final size:19
Alignment explanation
Indices: 83889979--83890025 Score: 78
Period size: 20 Copynumber: 2.5 Consensus size: 19
83889969 TGTTTGATGA
83889979 TTAAGTTGAGATTAATTGG
1 TTAAGTTGAGATTAATTGG
83889998 TTTAAGTTGAGATTAATTGG
1 -TTAAGTTGAGATTAATTGG
83890018 -TAAGTTGA
1 TTAAGTTGA
83890026 TAATCATAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
18 8 0.30
20 19 0.70
ACGTcount: A:0.32, C:0.00, G:0.26, T:0.43
Consensus pattern (19 bp):
TTAAGTTGAGATTAATTGG
Found at i:83890949 original size:12 final size:12
Alignment explanation
Indices: 83890932--83890956 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
83890922 ATGTAAGTGA
83890932 TCTTGATGATTT
1 TCTTGATGATTT
83890944 TCTTGATGATTT
1 TCTTGATGATTT
83890956 T
1 T
83890957 TACATTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:83891759 original size:47 final size:47
Alignment explanation
Indices: 83891693--83891823 Score: 153
Period size: 47 Copynumber: 2.8 Consensus size: 47
83891683 ATTCTGGAAA
* *
83891693 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTGAGACGAGT-G
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GAAAAGA-TAG
*
83891741 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACTACGAAAAGATAG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACGAAAAGATAG
* *
83891787 -TCAGAGTAAGACCATGTCTGGGACATGCCATCGGCAC
1 CT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC
83891824 CTTACCCATA
Statistics
Matches: 72, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
45 2 0.03
46 21 0.29
47 32 0.44
48 17 0.24
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.21
Consensus pattern (47 bp):
CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGAAAAGATAG
Found at i:83899375 original size:19 final size:20
Alignment explanation
Indices: 83899351--83899388 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
83899341 GGTACCACCA
83899351 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
83899370 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
83899389 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:83899777 original size:93 final size:93
Alignment explanation
Indices: 83899618--83899788 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
83899608 GCCCCTAAGT
* * *
83899618 GAACTCGGACTCAACTCAATGAGCTCAGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
83899683 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
83899711 GAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
83899776 CGAGTTCGGATGC
66 CGAGTTCGGATGC
83899789 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:83899778 original size:46 final size:46
Alignment explanation
Indices: 83899613--83899782 Score: 184
Period size: 46 Copynumber: 3.7 Consensus size: 46
83899603 AACCCGCCCC
* * * * *
83899613 TAAGTGAACTCGGACTCAACTCAATGAGCTCAGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCA
* * * *
83899659 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC--A-GAC-ATTTGCATCCA
* *
83899707 TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCA
83899752 TAAGTGAACTCGGACTCAACTCAACGAGTTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC
83899783 GGATGCTCAA
Statistics
Matches: 102, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
45 3 0.03
46 54 0.53
47 26 0.25
48 3 0.03
49 3 0.03
50 4 0.04
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCA
Found at i:83899804 original size:46 final size:45
Alignment explanation
Indices: 83899663--83899804 Score: 123
Period size: 46 Copynumber: 3.1 Consensus size: 45
83899653 CATCCATAAA
83899663 TGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCTCA-
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT-AG
* * * * *
83899710 CGAACTCGGACTCAACTCAACGAGTTCAGACAT-TTGCATCCAT-AAG
1 TGAACTCGGACTCAACTCAACGAGTTC-G-GATGCT-CAACCATCTAG
83899756 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CTAG
83899802 TGA
1 TGA
83899805 CATGTCACTT
Statistics
Matches: 76, Mismatches: 10, Indels: 19
0.72 0.10 0.18
Matches are distributed among these distances:
44 8 0.11
45 3 0.04
46 31 0.41
47 29 0.38
48 1 0.01
49 3 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCTAG
Found at i:83906489 original size:19 final size:20
Alignment explanation
Indices: 83906465--83906502 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
83906455 GGTACCACCA
83906465 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
83906484 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
83906503 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:83906890 original size:93 final size:93
Alignment explanation
Indices: 83906731--83906901 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
83906721 GCCCCTAAGT
* *
83906731 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
83906796 CGACTTCGGATGCCTAGTTACATCTCAC
66 CGACTTCGGATGCCTAGTTACATCTCAC
* * *
83906824 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
83906889 CGAGTTCGGATGC
66 CGACTTCGGATGC
83906902 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGACTTCGGATGCCTAGTTACATCTCAC
Found at i:83906898 original size:46 final size:46
Alignment explanation
Indices: 83906726--83906898 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
83906716 TAACCGCCCC
* * * *
83906726 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * *
83906772 TAAATGAACTCGGACTCAACTCAACGACTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
83906820 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
83906865 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
83906899 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 59 0.56
47 28 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:83908496 original size:46 final size:45
Alignment explanation
Indices: 83908352--83908569 Score: 192
Period size: 46 Copynumber: 4.7 Consensus size: 45
83908342 TTGTGTGTGC
* * * * * *
83908352 TAGTGTAAGACAAGTCTGGGACATGCATCGACC-ACATTATGGAAGC
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTAGA-GAT-AAAGT
*
83908398 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCACT-GAGA-CAAGT
1 TAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CTAGAGATAAAGT
*
83908444 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTAGAGATGTAAGT
1 --TAGTGTAAGACATGTCTGGGACATGCATCGGCCTAGAGAT-AAAGT
* *
83908492 TAGTGTAAGACATGTCTCGGACATGCATCGG-CTACGAAATAATAGT
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTA-GAGATAA-AGT
* *
83908538 CAGTGCAAGACCATGTCTGGGACATGGCATCG
1 TAGTGTAAGA-CATGTCTGGGACAT-GCATCG
83908570 ACTTGAGATA
Statistics
Matches: 146, Mismatches: 13, Indels: 24
0.80 0.07 0.13
Matches are distributed among these distances:
45 6 0.04
46 70 0.48
47 40 0.27
48 28 0.19
49 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (45 bp):
TAGTGTAAGACATGTCTGGGACATGCATCGGCCTAGAGATAAAGT
Found at i:83908578 original size:93 final size:94
Alignment explanation
Indices: 83908348--83908620 Score: 254
Period size: 94 Copynumber: 2.9 Consensus size: 94
83908338 TCACTTGTGT
* * * * * * *
83908348 GTGCTAGTGTAAGACAAGTCTGGGACATGCATC-GACCACATTATGGAAGCTAGTGTAAGACCAT
1 GTGCTAGTGCAAGACATGTCTGGGACATGCATCGGACTAGA-GATGTAAGTTAGTGTAAGACCAT
* * *
83908412 GTCTGGGACATGGCATCGGCACTGAGACAA
65 GTCTCGGACATGGCATCGGCACTGAAAAAA
* *
83908442 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTAGAGATGTAAGTTAGTGTAAGA-CATG
1 GTGCTAGTGCAAGACATGTCTGGGACATGCATCGGACTAGAGATGTAAGTTAGTGTAAGACCATG
83908506 TCTCGGACAT-GCATCGGCTAC-GAAATAATA
66 TCTCGGACATGGCATCGGC-ACTGAAA-AA-A
* * * ** *
83908536 GT-C-AGTGCAAGACCATGTCTGGGACATGGCATC-GACTTGAGATATGAGCCAATGTAAGACCA
1 GTGCTAGTGCAAGA-CATGTCTGGGACAT-GCATCGGACTAGAGATGTAAGTTAGTGTAAGACCA
* * *
83908598 TGTTTGGGACATGGCATTGGCAC
64 TGTCTCGGACATGGCATCGGCAC
83908621 CTTACCCATA
Statistics
Matches: 150, Mismatches: 21, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
92 19 0.13
93 50 0.33
94 70 0.47
95 11 0.07
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (94 bp):
GTGCTAGTGCAAGACATGTCTGGGACATGCATCGGACTAGAGATGTAAGTTAGTGTAAGACCATG
TCTCGGACATGGCATCGGCACTGAAAAAA
Found at i:83909661 original size:71 final size:71
Alignment explanation
Indices: 83909576--83909728 Score: 225
Period size: 71 Copynumber: 2.2 Consensus size: 71
83909566 GACATGGGCC
* * * * *
83909576 AAGACACGAGCGTGTCGAGGCCATGTAAGAAGACACGGGCCAGGTACACGGGCGTGTCGAGGCCG
1 AAGACACGGGCGTGTCAAGGCCATGTAAGAAGACACGGGCCAGGCACACGGGCATGTCGAAGCCG
83909641 TATGGG
66 TATGGG
* **
83909647 AAGACACGGGCGTGTCAAGGCCGTGTGGGAAGACACGGGCCAGGCACACGGGCATGTCGAAGCCG
1 AAGACACGGGCGTGTCAAGGCCATGTAAGAAGACACGGGCCAGGCACACGGGCATGTCGAAGCCG
*
83909712 TGTGGG
66 TATGGG
83909718 AAGACACGGGC
1 AAGACACGGGC
83909729 CAGGCACACG
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
71 73 1.00
ACGTcount: A:0.25, C:0.24, G:0.41, T:0.11
Consensus pattern (71 bp):
AAGACACGGGCGTGTCAAGGCCATGTAAGAAGACACGGGCCAGGCACACGGGCATGTCGAAGCCG
TATGGG
Found at i:83909667 original size:29 final size:29
Alignment explanation
Indices: 83909621--83909686 Score: 114
Period size: 29 Copynumber: 2.3 Consensus size: 29
83909611 CGGGCCAGGT
*
83909621 ACACGGGCGTGTCGAGGCCGTATGGGAAG
1 ACACGGGCGTGTCAAGGCCGTATGGGAAG
*
83909650 ACACGGGCGTGTCAAGGCCGTGTGGGAAG
1 ACACGGGCGTGTCAAGGCCGTATGGGAAG
83909679 ACACGGGC
1 ACACGGGC
83909687 CAGGCACACG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.21, C:0.23, G:0.44, T:0.12
Consensus pattern (29 bp):
ACACGGGCGTGTCAAGGCCGTATGGGAAG
Found at i:83909696 original size:42 final size:41
Alignment explanation
Indices: 83909650--83909758 Score: 173
Period size: 42 Copynumber: 2.6 Consensus size: 41
83909640 GTATGGGAAG
83909650 ACACGGGCGTGTCAAGGCCGTGTGGGAAGACACGGGCCAGGC
1 ACACGGGCGTGTCAA-GCCGTGTGGGAAGACACGGGCCAGGC
*
83909692 ACACGGGCATGTCGAAGCCGTGTGGGAAGACACGGGCCAGGC
1 ACACGGGCGTGTC-AAGCCGTGTGGGAAGACACGGGCCAGGC
83909734 ACACGGGCGTGTGCCAAGCCGTGTG
1 ACACGGGCGTGT--CAAGCCGTGTG
83909759 AAAACCACTG
Statistics
Matches: 62, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
42 49 0.79
43 12 0.19
44 1 0.02
ACGTcount: A:0.21, C:0.27, G:0.41, T:0.11
Consensus pattern (41 bp):
ACACGGGCGTGTCAAGCCGTGTGGGAAGACACGGGCCAGGC
Found at i:83913100 original size:17 final size:17
Alignment explanation
Indices: 83913077--83913121 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 17
83913067 ATTAAAATAA
83913077 TAATATATTATATAT-T
1 TAATATATTATATATGT
*
83913093 TAAATATATTCTATATGT
1 T-AATATATTATATATGT
83913111 TAATATATTAT
1 TAATATATTAT
83913122 TAAATAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 1 0.04
17 22 0.88
18 2 0.08
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (17 bp):
TAATATATTATATATGT
Found at i:83913842 original size:17 final size:18
Alignment explanation
Indices: 83913822--83913861 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
83913812 TACTTTACTA
83913822 TATATATTT-TAAATTTT
1 TATATATTTCTAAATTTT
83913839 TATA-ATTTCTAAATTTT
1 TATATATTTCTAAATTTT
*
83913856 TTTATA
1 TATATA
83913862 ATGTTTTAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 4 0.20
17 15 0.75
18 1 0.05
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (18 bp):
TATATATTTCTAAATTTT
Found at i:83914164 original size:29 final size:30
Alignment explanation
Indices: 83914099--83914170 Score: 74
Period size: 29 Copynumber: 2.4 Consensus size: 30
83914089 ACAATTTATG
* * *
83914099 ATTGATTAATTAATTTTGTATTAAGAAATTA
1 ATTGATT-ATAAATTTTGTACTAACAAATTA
* *
83914130 AGTGATTATAAATTTTG-ACTAACAACTTA
1 ATTGATTATAAATTTTGTACTAACAAATTA
*
83914159 ATTGATTTTAAA
1 ATTGATTATAAA
83914171 ATTATTTTAC
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
29 19 0.56
30 9 0.26
31 6 0.18
ACGTcount: A:0.42, C:0.04, G:0.10, T:0.44
Consensus pattern (30 bp):
ATTGATTATAAATTTTGTACTAACAAATTA
Found at i:83917129 original size:20 final size:20
Alignment explanation
Indices: 83917106--83917164 Score: 63
Period size: 20 Copynumber: 3.1 Consensus size: 20
83917096 TTAATTTATT
83917106 ATTTTTGAATTAAATTAAAC
1 ATTTTTGAATTAAATTAAAC
* **
83917126 A-TTTTG--TT-AATTTATT
1 ATTTTTGAATTAAATTAAAC
83917142 ATTTTTGAATTAAATTAAAC
1 ATTTTTGAATTAAATTAAAC
83917162 ATT
1 ATT
83917165 ATGGTATTAC
Statistics
Matches: 29, Mismatches: 6, Indels: 8
0.67 0.14 0.19
Matches are distributed among these distances:
16 6 0.21
17 7 0.24
19 7 0.24
20 9 0.31
ACGTcount: A:0.39, C:0.03, G:0.05, T:0.53
Consensus pattern (20 bp):
ATTTTTGAATTAAATTAAAC
Found at i:83917130 original size:36 final size:36
Alignment explanation
Indices: 83917090--83917164 Score: 150
Period size: 36 Copynumber: 2.1 Consensus size: 36
83917080 GTTTCTAATA
83917090 ATTTTGTTAATTTATTATTTTTGAATTAAATTAAAC
1 ATTTTGTTAATTTATTATTTTTGAATTAAATTAAAC
83917126 ATTTTGTTAATTTATTATTTTTGAATTAAATTAAAC
1 ATTTTGTTAATTTATTATTTTTGAATTAAATTAAAC
83917162 ATT
1 ATT
83917165 ATGGTATTAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.36, C:0.03, G:0.05, T:0.56
Consensus pattern (36 bp):
ATTTTGTTAATTTATTATTTTTGAATTAAATTAAAC
Found at i:83917147 original size:17 final size:17
Alignment explanation
Indices: 83917091--83917148 Score: 55
Period size: 17 Copynumber: 3.3 Consensus size: 17
83917081 TTTCTAATAA
83917091 TTTTGTTAATTTATTAT
1 TTTTGTTAATTTATTAT
* * *
83917108 TTTTGAATTAAATTA-AACA
1 TTTTG--TTAATTTATTA-T
83917127 TTTTGTTAATTTATTAT
1 TTTTGTTAATTTATTAT
83917144 TTTTG
1 TTTTG
83917149 AATTAAATTA
Statistics
Matches: 31, Mismatches: 6, Indels: 8
0.69 0.13 0.18
Matches are distributed among these distances:
17 17 0.55
18 2 0.06
19 12 0.39
ACGTcount: A:0.29, C:0.02, G:0.07, T:0.62
Consensus pattern (17 bp):
TTTTGTTAATTTATTAT
Found at i:83917173 original size:31 final size:32
Alignment explanation
Indices: 83917102--83917173 Score: 83
Period size: 36 Copynumber: 2.2 Consensus size: 32
83917092 TTTGTTAATT
* *
83917102 TATTATTTTTGAATTAAATTAAACATTTTGTTAATT
1 TATTATTTTTGAATTAAATTAAACATTATG----TG
83917138 TATTATTTTTGAATTAAATTAAACATTATG-G
1 TATTATTTTTGAATTAAATTAAACATTATGTG
83917169 TATTA
1 TATTA
83917174 CATAATATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
31 5 0.15
36 29 0.85
ACGTcount: A:0.38, C:0.03, G:0.07, T:0.53
Consensus pattern (32 bp):
TATTATTTTTGAATTAAATTAAACATTATGTG
Found at i:83918386 original size:11 final size:11
Alignment explanation
Indices: 83918372--83918397 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
83918362 CCAATATAAG
83918372 AAAATAAAAAT
1 AAAATAAAAAT
83918383 AAAATAAAAAT
1 AAAATAAAAAT
83918394 AAAA
1 AAAA
83918398 ACAAGCTGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:83920700 original size:25 final size:25
Alignment explanation
Indices: 83920672--83920721 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
83920662 AACAAAGGAA
* *
83920672 AGTATTTTCACATAACATAGTGTAT
1 AGTATTTGCACATAACATAGCGTAT
*
83920697 AGTATTTGCACATGACATAGCGTAT
1 AGTATTTGCACATAACATAGCGTAT
83920722 CAATCTTGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (25 bp):
AGTATTTGCACATAACATAGCGTAT
Found at i:83922886 original size:45 final size:47
Alignment explanation
Indices: 83922822--83922923 Score: 122
Period size: 45 Copynumber: 2.2 Consensus size: 47
83922812 ATGCTATCCA
*
83922822 GAGCTCCCT-ATTAATAACTCTT-TGGAGTTACCTGTTAAGCTC-AAT
1 GAGCTTCCTGATTAATAACTCTTAT-GAGTTACCTGTTAAGCTCGAAT
* * *
83922867 GAGCTTCCTGATTAA-AACTCTTATGAGTTTCCTGTTTAGCTCGGAT
1 GAGCTTCCTGATTAATAACTCTTATGAGTTACCTGTTAAGCTCGAAT
*
83922913 AAGCTTCCTGA
1 GAGCTTCCTGA
83922924 CACATGGCTC
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
45 31 0.63
46 18 0.37
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.36
Consensus pattern (47 bp):
GAGCTTCCTGATTAATAACTCTTATGAGTTACCTGTTAAGCTCGAAT
Found at i:83925294 original size:43 final size:43
Alignment explanation
Indices: 83925260--83925370 Score: 177
Period size: 43 Copynumber: 2.6 Consensus size: 43
83925250 CGGCATTACA
* *
83925260 CCTGCTAGGCACAAAGGCCCGAATACACATCACCGGCGCGAAG
1 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAG
* * *
83925303 CCTGCTAGGCCCGAAGGGCCGAATGCACATCACCGGCACGAAG
1 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAG
83925346 CCTGCTAGGCACGAAGGCCCGAATA
1 CCTGCTAGGCACGAAGGCCCGAATA
83925371 TAATACCAGC
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.28, C:0.34, G:0.28, T:0.10
Consensus pattern (43 bp):
CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAG
Found at i:83925410 original size:38 final size:38
Alignment explanation
Indices: 83925363--83925546 Score: 260
Period size: 38 Copynumber: 4.8 Consensus size: 38
83925353 GGCACGAAGG
* *
83925363 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAT
* *
83925401 CCCTAATATAATACCAGCATGAAGCCTGCGGGATTTAT
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAT
* *
83925439 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAT
* *
83925477 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAT
* ** *
83925515 CCCGGATATTTTACCATCACGAAGCCTGCGGG
1 CCCGAATATAATACCAGCACGAAGCCTGCGGG
83925547 TCTTTAAGCC
Statistics
Matches: 135, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 135 1.00
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACGAAGCCTGCGGGATTTAT
Found at i:83927294 original size:46 final size:46
Alignment explanation
Indices: 83927244--83927416 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
83927234 TTGAGCATCT
83927244 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCC
* * * *
83927290 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG--TCC
* * * *
83927337 GAACTCATTGAGTTGAGTCCGAGTTCACTCATGGATACGAATG-CC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCC
*
83927382 CAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
83927417 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
45 8 0.08
46 55 0.52
47 28 0.27
48 4 0.04
50 4 0.04
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCC
Found at i:83927397 original size:93 final size:93
Alignment explanation
Indices: 83927238--83927408 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
83927228 GGATGGTTGA
* * * * *
83927238 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTCATGGATACAAATGTCCCAACTCGTTGAGT
83927303 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
83927331 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTCATGGATACGAATG-CCCAAGCTCGTTGAG
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTCATGGATACAAATGTCCCAA-CTCGTTGAG
83927395 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
83927409 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 4 0.06
93 67 0.94
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTCATGGATACAAATGTCCCAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:83933517 original size:43 final size:43
Alignment explanation
Indices: 83933456--83933954 Score: 811
Period size: 43 Copynumber: 11.6 Consensus size: 43
83933446 CCGGCATTAC
* *
83933456 GCCTGCTAGGCACGAAGGCCCGAATACACATTACCGACACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
83933499 GCCTGCTAGGCACGAAGGCCCGAATATACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * *
83933542 GCCTGCTAGGCACGAAGGCCCGAATACACATCATCAGCACGAG
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
83933585 GCTTGCTAGGCACGAAGGCCCGAATACACATAACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
83933628 GCCTGCTAGGCACGAAGGCCCGAATATACCTCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
83933671 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* * *
83933714 GCCTGCTAGGCACGAAGGCTCGAAAACACATCACTGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
83933757 GCCTGCTAGGCACGAAGGCCCGAATAGACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
83933800 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
83933843 GCCTGCTAGGCACGAAGGCCC-AAGTACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAA-TACACATCACCGGCACGAA
* * *
83933886 CCCTGCTTGGCACGAAGGCCCGAATACACATCACCGGCATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
83933929 ACCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
83933955 TAATACCAGC
Statistics
Matches: 421, Mismatches: 33, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
42 2 0.00
43 417 0.99
44 2 0.00
ACGTcount: A:0.30, C:0.33, G:0.25, T:0.11
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:83933997 original size:38 final size:38
Alignment explanation
Indices: 83933947--83934092 Score: 211
Period size: 38 Copynumber: 3.8 Consensus size: 38
83933937 GGCACGAAGG
* * * *
83933947 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
83933985 CCCTGATGTAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
83934023 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
** *
83934061 CCCGGATATTTTACTAGCACGAAGCCTGCGGG
1 CCCGGATATAATACCAGCACGAAGCCTGCGGG
83934093 TCTTTAAGCT
Statistics
Matches: 97, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 97 1.00
ACGTcount: A:0.28, C:0.27, G:0.24, T:0.21
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:83940909 original size:22 final size:20
Alignment explanation
Indices: 83940881--83940920 Score: 62
Period size: 22 Copynumber: 1.9 Consensus size: 20
83940871 ACATGGCTAA
83940881 CACAAGCCAAACACTAAATGTT
1 CACAAGCC-AACAC-AAATGTT
83940903 CACAAGCCAACACAAATG
1 CACAAGCCAACACAAATG
83940921 GCCAGAATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.28
21 5 0.28
22 8 0.44
ACGTcount: A:0.47, C:0.30, G:0.10, T:0.12
Consensus pattern (20 bp):
CACAAGCCAACACAAATGTT
Found at i:83942139 original size:21 final size:20
Alignment explanation
Indices: 83942109--83942147 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
83942099 TAAAACTTGT
83942109 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
83942129 ATAATCTATCATTAAACAT
1 ATAA-CTATCATCAAACAT
83942148 CAAAATACTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:83943858 original size:28 final size:28
Alignment explanation
Indices: 83943826--83943882 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
83943816 ATGACAATTA
83943826 TCTGGGCTAATCAAGAAACTCATAAGAG
1 TCTGGGCTAATCAAGAAACTCATAAGAG
83943854 TCTGGGCTAATCAAGAAACTCATAAGAG
1 TCTGGGCTAATCAAGAAACTCATAAGAG
83943882 T
1 T
83943883 TTTACTCAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.39, C:0.18, G:0.21, T:0.23
Consensus pattern (28 bp):
TCTGGGCTAATCAAGAAACTCATAAGAG
Found at i:83951686 original size:41 final size:41
Alignment explanation
Indices: 83951629--83951708 Score: 133
Period size: 41 Copynumber: 2.0 Consensus size: 41
83951619 AAAGCCATTA
*
83951629 GTGGAGCCACTGTCGTCAAGCAACCATGCGATCCTCAATCG
1 GTGGAGCCACGGTCGTCAAGCAACCATGCGATCCTCAATCG
* *
83951670 GTGGATCCACGGTCGTCAAGCAACCATGCGATTCTCAAT
1 GTGGAGCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
83951709 TTCTTCCTCC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.25, C:0.30, G:0.24, T:0.21
Consensus pattern (41 bp):
GTGGAGCCACGGTCGTCAAGCAACCATGCGATCCTCAATCG
Found at i:83951998 original size:27 final size:27
Alignment explanation
Indices: 83951954--83952251 Score: 328
Period size: 27 Copynumber: 11.1 Consensus size: 27
83951944 TACAATGGTG
* * * *
83951954 TTTTGGTAAATCTACAAATTAATGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
* *
83951981 TTTTGGTAATTTTCCAAATCAGGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
*
83952008 TTTTGGTAATTTTACAAATCATGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
* * * *
83952035 TTTAGGTAATTTTCCAAATTAGGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
*
83952062 TTTTGGTAATTTTACAAATCAAGGATA
1 TTTTGGTAATTTTACAAATCAAGGGTA
* * * * *
83952089 TTTCGATAATTTTACAAGTCGAGAGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
* **
83952116 TTTTAGTAATTTTACAGGTCAAGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
* *
83952143 TTTTGATAATTTCACAAATCAAGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
*
83952170 TTTTGGTAATTTTACAAA-CCAGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
* * *
83952196 TTTTGGGAATTTTACTAATCGAGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
** *
83952223 TTTTGGTAATTTTGTAAACCAAGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
83952250 TT
1 TT
83952252 CAATATTTTT
Statistics
Matches: 224, Mismatches: 46, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
26 23 0.10
27 201 0.90
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
TTTTGGTAATTTTACAAATCAAGGGTA
Found at i:83955474 original size:47 final size:48
Alignment explanation
Indices: 83955405--83955621 Score: 214
Period size: 46 Copynumber: 4.6 Consensus size: 48
83955395 GGTGTTGATG
* * * * **
83955405 CCATGTCCTAGAAACGGTCTTACAGTGGCTCAT-ATCTC-AAGTAGAT
1 CCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAAGCCGAT
*
83955451 ACCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCAAAGCCGAT
1 -CCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAAGCCGAT
* * * * *
83955499 GCATGTTCCAGACAT-GTCTTACACTGGCTCA-CGTCTCGAGGCCGAT
1 CCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAAGCCGAT
* * * * *
83955545 GCATGTCCCAGACAT-GTCTTACACTAGC-CTTCGTCTCAATGCCGATT
1 CCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAAGCCGA-T
83955592 CCATGTCCCAGACATGGTCTTACACTGGCT
1 CCATGTCCCAGACATGGTCTTACACTGGCT
83955622 TTCATAATGT
Statistics
Matches: 143, Mismatches: 20, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
45 1 0.01
46 65 0.45
47 59 0.41
48 18 0.13
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (48 bp):
CCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAAGCCGAT
Found at i:83955543 original size:46 final size:46
Alignment explanation
Indices: 83955421--83955671 Score: 208
Period size: 46 Copynumber: 5.4 Consensus size: 46
83955411 CCTAGAAACG
* * ** *
83955421 GTCTTACAGTGGCTCATATCTCAA-GTAGATACCATGTCCCAGACAT
1 GTCTTACACTGGCTCACATCTCAAGGCCGAT-GCATGTCCCAGACAT
* * *
83955467 GGTCTTACACTGACT-ATCATCTCAAAGCCGATGCATGTTCCAGACAT
1 -GTCTTACACTGGCTCA-CATCTCAAGGCCGATGCATGTCCCAGACAT
* *
83955514 GTCTTACACTGGCTCACGTCTCGAGGCCGATGCATGTCCCAGACAT
1 GTCTTACACTGGCTCACATCTCAAGGCCGATGCATGTCCCAGACAT
* * * * *
83955560 GTCTTACACTAGC-CTTCGTCTCAATGCCGATTCCATGTCCCAGACAT
1 GTCTTACACTGGCTC-ACATCTCAAGGCCGA-TGCATGTCCCAGACAT
** *
83955607 GGTCTTACACTGGCTTTCA--T-AATGTGACTGATGCATGTCCCAGACAT
1 -GTCTTACACTGGCTCACATCTCAA-G-G-CCGATGCATGTCCCAGACAT
*
83955654 GTCTTACACTAGCTCACA
1 GTCTTACACTGGCTCACA
83955672 CAGAATGACC
Statistics
Matches: 168, Mismatches: 26, Indels: 21
0.78 0.12 0.10
Matches are distributed among these distances:
45 3 0.02
46 80 0.48
47 64 0.38
48 21 0.12
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.28
Consensus pattern (46 bp):
GTCTTACACTGGCTCACATCTCAAGGCCGATGCATGTCCCAGACAT
Found at i:83955650 original size:94 final size:93
Alignment explanation
Indices: 83955453--83955666 Score: 263
Period size: 94 Copynumber: 2.3 Consensus size: 93
83955443 AAGTAGATAC
* * *
83955453 CATGTCCCAGACATGGTCTTACACT-GACTATCATCTCAAAGCCGATGCATGTTCCAGACATGTC
1 CATGTCCCAGACAT-GTCTTACACTAGCCTATCATCTCAAAGCCGATCCATGTCCCAGACATGTC
* * *
83955517 TTACACTGGCTCACGTCTCGAGGCCGATG
65 TTACACTGGCTCACATATCGAGACCGATG
* *
83955546 CATGTCCCAGACATGTCTTACACTAGCCT-TCGTCTCAATGCCGATTCCATGTCCCAGACATGGT
1 CATGTCCCAGACATGTCTTACACTAGCCTATCATCTCAAAGCCGA-TCCATGTCCCAGACAT-GT
** * *
83955610 CTTACACTGGCTTTCATAAT-GTGACTGATG
64 CTTACACTGGCTCACAT-ATCGAGACCGATG
83955640 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
83955667 TCACACAGAA
Statistics
Matches: 105, Mismatches: 12, Indels: 7
0.85 0.10 0.06
Matches are distributed among these distances:
92 23 0.22
93 31 0.30
94 50 0.48
95 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (93 bp):
CATGTCCCAGACATGTCTTACACTAGCCTATCATCTCAAAGCCGATCCATGTCCCAGACATGTCT
TACACTGGCTCACATATCGAGACCGATG
Found at i:83958776 original size:30 final size:30
Alignment explanation
Indices: 83958742--83958802 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
83958732 TCCTTAACTC
83958742 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
83958772 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
83958802 A
1 A
83958803 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:83963489 original size:27 final size:27
Alignment explanation
Indices: 83963459--83963635 Score: 212
Period size: 27 Copynumber: 6.6 Consensus size: 27
83963449 CCTTAATCAA
* *
83963459 TAAAATGACTATTTTTCCCTTATGGGG
1 TAAAATGACTATTTTGCCCTTATGAGG
83963486 TAAAATGACTATTTTGCCCTTATGAGG
1 TAAAATGACTATTTTGCCCTTATGAGG
* *
83963513 TAAAATGACTGTTTTGCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGAGG
* * * *
83963540 TAAAATAACTGTTTTTCCCTTTTGAGG
1 TAAAATGACTATTTTGCCCTTATGAGG
*
83963567 TAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGAGG
* * * *
83963594 TAAAATGATTGTTTTGACCTT-TTATGG
1 TAAAATGACTATTTTGCCCTTATGA-GG
*
83963621 TAAGATGACTATTTT
1 TAAAATGACTATTTT
83963636 ATCCCTATGT
Statistics
Matches: 128, Mismatches: 21, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 1 0.01
27 127 0.99
ACGTcount: A:0.27, C:0.13, G:0.18, T:0.42
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCCTTATGAGG
Found at i:83963583 original size:81 final size:81
Alignment explanation
Indices: 83963459--83963641 Score: 267
Period size: 81 Copynumber: 2.2 Consensus size: 81
83963449 CCTTAATCAA
*
83963459 TAAAATGACTATTTTTCCCTTATGGGGTAAAATGACTATTTTGCCCTTATGAGGTAAAATGACTG
1 TAAAATGACTATTTTTCCCTTATGAGGTAAAATGACTATTTTGCCCTTATGAGGTAAAATGACTG
* *
83963524 TTTTGCCCTTATGTGG
66 TTTTGACCTTATATGG
* * * * *
83963540 TAAAATAACTGTTTTTCCCTTTTGAGGTAAAATGACTATTTTGCCCTTATGTGGTAAAATGATTG
1 TAAAATGACTATTTTTCCCTTATGAGGTAAAATGACTATTTTGCCCTTATGAGGTAAAATGACTG
*
83963605 TTTTGACCTTTTATGG
66 TTTTGACCTTATATGG
*
83963621 TAAGATGACTATTTTATCCCT
1 TAAAATGACTATTTT-TCCCT
83963642 ATGTGATTTA
Statistics
Matches: 89, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
81 84 0.94
82 5 0.06
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.42
Consensus pattern (81 bp):
TAAAATGACTATTTTTCCCTTATGAGGTAAAATGACTATTTTGCCCTTATGAGGTAAAATGACTG
TTTTGACCTTATATGG
Found at i:83963646 original size:54 final size:53
Alignment explanation
Indices: 83963459--83963635 Score: 237
Period size: 54 Copynumber: 3.3 Consensus size: 53
83963449 CCTTAATCAA
* * * *
83963459 TAAAATGACTATTTTTCCCTTATGGGGTAAAATGACTATTTTGCCCTTATGAGG
1 TAAAATGACTATTTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTT-TTAGG
* * *
83963513 TAAAATGACTGTTTTGCCCTTATGTGGTAAAATAACTGTTTTTCCCTTTTGAGG
1 TAAAATGACTATTTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTTTT-AGG
* *
83963567 TAAAATGACTATTTTGCCCTTATGTGGTAAAATGATTGTTTTGACCTTTTATGG
1 TAAAATGACTATTTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTTTTA-GG
*
83963621 TAAGATGACTATTTT
1 TAAAATGACTATTTT
83963636 ATCCCTATGT
Statistics
Matches: 108, Mismatches: 13, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
53 2 0.02
54 106 0.98
ACGTcount: A:0.27, C:0.13, G:0.18, T:0.42
Consensus pattern (53 bp):
TAAAATGACTATTTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTTTTAGG
Found at i:83966624 original size:38 final size:38
Alignment explanation
Indices: 83966483--83966623 Score: 219
Period size: 38 Copynumber: 3.7 Consensus size: 38
83966473 GGCTTAAAGA
**
83966483 CCCGCAGGCTTCGTGCTGGTAAAATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
83966521 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
** *
83966559 CCCGCAGGCTTCGTGCTGGTATTATATTAGGGATAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
* *
83966597 CCCGCAGGCCTAGTGCTGGTATTATAT
1 CCCGCAGGCTTCGTGCTGGTATTATAT
83966624 TCAGGCCTTC
Statistics
Matches: 96, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 96 1.00
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.30
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAAT
Found at i:83966674 original size:43 final size:43
Alignment explanation
Indices: 83966619--83966912 Score: 516
Period size: 43 Copynumber: 6.8 Consensus size: 43
83966609 GTGCTGGTAT
* *
83966619 TATATTCAGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATG
1 TATATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATG
*
83966662 TGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATG
1 TATATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATG
*
83966705 TATATTCGAGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATG
1 TATATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATG
83966748 TATATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATG
1 TATATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATG
* *
83966791 TGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATG
1 TATATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATG
83966834 TATATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATG
1 TATATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATG
**
83966877 CGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCC
1 TATATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCC
83966913 TAGCAGGCTT
Statistics
Matches: 239, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 239 1.00
ACGTcount: A:0.12, C:0.27, G:0.32, T:0.30
Consensus pattern (43 bp):
TATATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATG
Found at i:83966909 original size:16 final size:16
Alignment explanation
Indices: 83966888--83966928 Score: 82
Period size: 16 Copynumber: 2.6 Consensus size: 16
83966878 GTATTCGGGC
83966888 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
83966904 CTTCGTGCCTAGCAGG
1 CTTCGTGCCTAGCAGG
83966920 CTTCGTGCC
1 CTTCGTGCC
83966929 GGTGATGTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.10, C:0.34, G:0.29, T:0.27
Consensus pattern (16 bp):
CTTCGTGCCTAGCAGG
Found at i:83979506 original size:25 final size:25
Alignment explanation
Indices: 83979477--83979531 Score: 92
Period size: 25 Copynumber: 2.2 Consensus size: 25
83979467 CACCACTGCT
83979477 TGCAAAAATAAACACACTTGCACAC
1 TGCAAAAATAAACACACTTGCACAC
*
83979502 TGCAAAAATAAACGCACTTGCACAC
1 TGCAAAAATAAACACACTTGCACAC
*
83979527 AGCAA
1 TGCAA
83979532 GACTTGAACC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.47, C:0.27, G:0.11, T:0.15
Consensus pattern (25 bp):
TGCAAAAATAAACACACTTGCACAC
Found at i:83985778 original size:14 final size:14
Alignment explanation
Indices: 83985759--83985785 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
83985749 CAAATACTTG
83985759 ATTTGTTCTTAATT
1 ATTTGTTCTTAATT
83985773 ATTTGTTCTTAAT
1 ATTTGTTCTTAAT
83985786 GCTTGAGTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.07, T:0.63
Consensus pattern (14 bp):
ATTTGTTCTTAATT
Found at i:83991553 original size:6 final size:6
Alignment explanation
Indices: 83991537--83991590 Score: 65
Period size: 6 Copynumber: 9.2 Consensus size: 6
83991527 TTTTGATTTA
* * *
83991537 TTTATT CTTATT TTTATT TTTA-T TTTATT TTTCTT TTTCTT TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
*
83991584 TTCATT T
1 TTTATT T
83991591 CAATTTTATT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
5 5 0.12
6 37 0.88
ACGTcount: A:0.13, C:0.07, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTATT
Found at i:83991558 original size:22 final size:21
Alignment explanation
Indices: 83991520--83991584 Score: 67
Period size: 23 Copynumber: 2.9 Consensus size: 21
83991510 CATTGGATCC
*
83991520 TCTTATTTTTTGATTTATTTAT
1 TCTTATTTTTT-TTTTATTTAT
83991542 TCTTATTTTTATTTTTATTTTAT
1 TCTTATTTTT-TTTTTA-TTTAT
* *
83991565 TTTTCTTTTTCTTTTTATTT
1 TCTTATTTTT-TTTTTATTT
83991585 TCATTTCAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
22 17 0.46
23 20 0.54
ACGTcount: A:0.14, C:0.06, G:0.02, T:0.78
Consensus pattern (21 bp):
TCTTATTTTTTTTTTATTTAT
Found at i:83998500 original size:55 final size:53
Alignment explanation
Indices: 83998391--83998646 Score: 224
Period size: 55 Copynumber: 4.8 Consensus size: 53
83998381 CATTAGGGTT
** *
83998391 CAAGGATACCATGTAAGACCATG-CTAAGGTATGCCAATTGGTAAGGTTTC-TAAGG
1 CAAGGATACCATGTAAGACCATGTC-AAGACATGGC-ATTGGTAA-G-TTCATAAGG
* * *
83998446 CAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGG
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT-C-ATAAGG
* * * *
83998501 CAAAGG-TCCCATGTAAGACCATG-CTAAGGCATGGCATTGGTGAGTTCATAAAG
1 C-AAGGATACCATGTAAGACCATGTC-AAGACATGGCATTGGTAAGTTCATAAGG
*
83998554 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT--TCAA--
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCAT-AAGG
* * * * *
83998604 -AAGGATACCACGTACGACCATGACAAGTCATGGCAATGGTAAG
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
83998647 GTACCCGTGT
Statistics
Matches: 171, Mismatches: 21, Indels: 24
0.79 0.10 0.11
Matches are distributed among these distances:
49 39 0.23
51 1 0.01
52 8 0.05
53 42 0.25
54 10 0.06
55 66 0.39
56 5 0.03
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (53 bp):
CAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGG
Found at i:83998598 original size:108 final size:110
Alignment explanation
Indices: 83998399--83998599 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
83998389 TTCAAGGATA
* * *
83998399 CCATGTAAGACCATGCTAAGGTATGCCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCTAAGGCATGCCAATTGGTAAGGTTTCTAAAGCAAGGAAACCATGTAAGA
*
83998464 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * *
83998509 CCATGTAAGACCATGCTAAGGCATGGC-ATTGGTGA-G-TTCATAAAGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCTAAGGCATGCCAATTGGTAAGGTTTC-TAAAGCAAGGAAACCATGTAAG
*
83998571 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
83998600 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.57
109 7 0.09
110 25 0.30
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (110 bp):
CCATGTAAGACCATGCTAAGGCATGCCAATTGGTAAGGTTTCTAAAGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:84001449 original size:35 final size:34
Alignment explanation
Indices: 84001400--84001495 Score: 120
Period size: 35 Copynumber: 2.8 Consensus size: 34
84001390 CTCTCAACTA
* * * *
84001400 GGGCCTTAGTCCATTTCATTAACAGTAGCAATTT
1 GGGCCTAAGCCCATTTCAATAACAGTAGCAATAT
* * *
84001434 GGGGCCTGAGCCCATTTCAATAACATTAGCAGTAT
1 -GGGCCTAAGCCCATTTCAATAACAGTAGCAATAT
84001469 GGGCCTAAGCCCATTTCAATAACAGTA
1 GGGCCTAAGCCCATTTCAATAACAGTA
84001496 TCAGTACAGT
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
34 25 0.47
35 28 0.53
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (34 bp):
GGGCCTAAGCCCATTTCAATAACAGTAGCAATAT
Found at i:84001480 original size:34 final size:35
Alignment explanation
Indices: 84001400--84001501 Score: 125
Period size: 34 Copynumber: 2.9 Consensus size: 35
84001390 CTCTCAACTA
* * * * *
84001400 GGGCCTTAGTCCATTTCATTAACAGTAGCAATTTG
1 GGGCCTAAGCCCATTTCAATAACAGTAGCAGTATG
* *
84001435 GGGCCTGAGCCCATTTCAATAACATTAGCAGTAT-
1 GGGCCTAAGCCCATTTCAATAACAGTAGCAGTATG
*
84001469 GGGCCTAAGCCCATTTCAATAACAGTATCAGTA
1 GGGCCTAAGCCCATTTCAATAACAGTAGCAGTA
84001502 CAGTATGCAA
Statistics
Matches: 58, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
34 30 0.52
35 28 0.48
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (35 bp):
GGGCCTAAGCCCATTTCAATAACAGTAGCAGTATG
Found at i:84009250 original size:29 final size:29
Alignment explanation
Indices: 84009218--84009294 Score: 118
Period size: 29 Copynumber: 2.7 Consensus size: 29
84009208 AATTATATTC
*
84009218 ATATGGCCCATTAGGCCCAAATCACCTGT
1 ATATGGCCCATTAGGCCCAAATCACATGT
* *
84009247 ATATGGCCCATTCGGCCCAAATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACATGT
*
84009276 ATATGGCCCGTTAGGCCCA
1 ATATGGCCCATTAGGCCCA
84009295 GTCACATTCA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATGT
Found at i:84009254 original size:58 final size:58
Alignment explanation
Indices: 84009183--84009294 Score: 136
Period size: 58 Copynumber: 1.9 Consensus size: 58
84009173 AATTTCACAT
* * *
84009183 ACCTATATCTGGCCCCATTAAGCCC-AATTATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTATATATGG-CCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
* ** * *
84009241 ACCTGTATATGGCCCATTCGGCCCAAATCACATTTATATGGCCCGTTAGGCCCA
1 ACCTATATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCA
84009295 GTCACATTCA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
57 10 0.22
58 35 0.78
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (58 bp):
ACCTATATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:84010700 original size:16 final size:16
Alignment explanation
Indices: 84010662--84010700 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
84010652 ATTTCCTAAC
* *
84010662 TTTTGGATTTTGGGAT
1 TTTTGGGTTTCGGGAT
84010678 TTTTGGGTTTCGGGAT
1 TTTTGGGTTTCGGGAT
84010694 TTTTGGG
1 TTTTGGG
84010701 GCGTTACAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.08, C:0.03, G:0.36, T:0.54
Consensus pattern (16 bp):
TTTTGGGTTTCGGGAT
Done.