Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 253 of 349
Found at i:84013593 original size:28 final size:29
Alignment explanation
Indices: 84013561--84013670 Score: 129
Period size: 28 Copynumber: 3.9 Consensus size: 29
84013551 CTGTATCTGG
* *
84013561 CCATTAAGCCC-AATCATATTCATATGGC
1 CCATTAGGCCCAAATCACATTCATATGGC
*
84013589 CCATT-GGCCCAAATCACCTGT-ATATGGC
1 CCATTAGGCCCAAATCACAT-TCATATGGC
* *
84013617 CTATTAGGCCCAAATCACATTTATATGGC
1 CCATTAGGCCCAAATCACATTCATATGGC
*
84013646 CCATTAGGCTC-AATCACATTCATAT
1 CCATTAGGCCCAAATCACATTCATAT
84013671 TCATGCTCAC
Statistics
Matches: 70, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
27 4 0.06
28 36 0.51
29 30 0.43
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.29
Consensus pattern (29 bp):
CCATTAGGCCCAAATCACATTCATATGGC
Found at i:84013632 original size:29 final size:29
Alignment explanation
Indices: 84013552--84013664 Score: 119
Period size: 29 Copynumber: 4.0 Consensus size: 29
84013542 TTCACATAAC
* * *
84013552 TGTATCTGG-CCATTAAGCCC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
*
84013579 T-TCATATGGCCCATT-GGCCCAAATCACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
*
84013607 TGTATATGGCCTATTAGGCCCAAATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
84013636 TTTATATGGCCCATTAGGCTC-AATCACA
1 TGTATATGGCCCATTAGGCCCAAATCACA
84013664 T
1 T
84013665 TCATATTCAT
Statistics
Matches: 72, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
26 1 0.01
27 10 0.14
28 30 0.42
29 31 0.43
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:84017956 original size:28 final size:29
Alignment explanation
Indices: 84017913--84018027 Score: 130
Period size: 29 Copynumber: 4.0 Consensus size: 29
84017903 TACCTGTATC
* *
84017913 TGGCCCATTAAGCCCAATCATATTCT-TA
1 TGGCCCATTAGGCCCAATCACATTCTATA
* *
84017941 TGACCCATTAGGCCCAAATCAC-TTGTATA
1 TGGCCCATTAGGCCC-AATCACATTCTATA
*
84017970 TGGCCCATTAGTCCCAGATCACATT-TATA
1 TGGCCCATTAGGCCCA-ATCACATTCTATA
*
84017999 TGGCCCGTTAGGCCCAATCACATTC-ATA
1 TGGCCCATTAGGCCCAATCACATTCTATA
84018027 T
1 T
84018028 TCATGCTCAC
Statistics
Matches: 74, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
28 29 0.39
29 43 0.58
30 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.30
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAATCACATTCTATA
Found at i:84018018 original size:57 final size:57
Alignment explanation
Indices: 84017907--84018019 Score: 142
Period size: 57 Copynumber: 2.0 Consensus size: 57
84017897 TTCACATACC
* *
84017907 TGTATCTGGCCCATTAAGCCCAATCATATTCTTATGACCCATTAGGCCCAAATCACT
1 TGTATATGGCCCATTAAGCCCAATCACATTCTTATGACCCATTAGGCCCAAATCACT
* *
84017964 TGTATATGGCCCATT-AGTCCCAGATCACATT-TATATGGCCCGTTAGGCCC-AATCAC
1 TGTATATGGCCCATTAAG-CCCA-ATCACATTCT-TATGACCCATTAGGCCCAAATCAC
84018020 ATTCATATTC
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
56 2 0.04
57 25 0.51
58 22 0.45
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (57 bp):
TGTATATGGCCCATTAAGCCCAATCACATTCTTATGACCCATTAGGCCCAAATCACT
Found at i:84018117 original size:18 final size:19
Alignment explanation
Indices: 84018094--84018129 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
84018084 ATGGGCCCAA
84018094 TAGCCCATCT-GGCCCATT
1 TAGCCCATCTCGGCCCATT
*
84018112 TAGCCCATTTCGGCCCAT
1 TAGCCCATCTCGGCCCAT
84018130 ATGGCCAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.17, C:0.39, G:0.17, T:0.28
Consensus pattern (19 bp):
TAGCCCATCTCGGCCCATT
Found at i:84018261 original size:16 final size:16
Alignment explanation
Indices: 84018237--84018279 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
84018227 GTAGCCAAAC
*
84018237 TTTCAACTTTTCGGTA
1 TTTCAACTTTTCGGCA
*
84018253 TTTCGACTTTTCGGCA
1 TTTCAACTTTTCGGCA
*
84018269 TTTCAGCTTTT
1 TTTCAACTTTT
84018280 GCCGACACAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.14, C:0.21, G:0.14, T:0.51
Consensus pattern (16 bp):
TTTCAACTTTTCGGCA
Found at i:84019386 original size:8 final size:8
Alignment explanation
Indices: 84019375--84019405 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
84019365 AAAAATTCAA
*
84019375 GATTTCTG
1 GATTTTTG
84019383 GATTTTTG
1 GATTTTTG
84019391 GATTTTTG
1 GATTTTTG
84019399 GATTTTT
1 GATTTTT
84019406 AGGTTTCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.13, C:0.03, G:0.23, T:0.61
Consensus pattern (8 bp):
GATTTTTG
Found at i:84020513 original size:34 final size:34
Alignment explanation
Indices: 84020465--84020562 Score: 169
Period size: 34 Copynumber: 2.9 Consensus size: 34
84020455 CTCAATTAAA
* * *
84020465 GCCTTAGCCCATTTCATTAACAGTAGCAGTCTGG
1 GCCTGAGCCCATTTCAGTAACAGTAGCAGCCTGG
84020499 GCCTGAGCCCATTTCAGTAACAGTAGCAGCCTGG
1 GCCTGAGCCCATTTCAGTAACAGTAGCAGCCTGG
84020533 GCCTGAGCCCATTTCAGTAACAGTAGCAGC
1 GCCTGAGCCCATTTCAGTAACAGTAGCAGC
84020563 AGAATATGCA
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 61 1.00
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.23
Consensus pattern (34 bp):
GCCTGAGCCCATTTCAGTAACAGTAGCAGCCTGG
Found at i:84026716 original size:43 final size:43
Alignment explanation
Indices: 84026655--84026865 Score: 361
Period size: 43 Copynumber: 4.9 Consensus size: 43
84026645 ACATATCATT
* * *
84026655 TCACCGGCATTACGCCTGCTAGGCACGAAGGCCTGAATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
*
84026698 TCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
*
84026741 TCACCGGCA-TGAAGCCTGCTAGGCACGAAGGCCTGAATACACA
1 TCACCGGCACT-AAGCCTGCTAGGCACGAAGGCCCGAATACACA
84026784 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
84026827 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATA
84026866 TAATACCAGC
Statistics
Matches: 159, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
43 158 0.99
44 1 0.01
ACGTcount: A:0.30, C:0.33, G:0.24, T:0.13
Consensus pattern (43 bp):
TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
Found at i:84027161 original size:43 final size:43
Alignment explanation
Indices: 84027095--84027241 Score: 190
Period size: 43 Copynumber: 3.5 Consensus size: 43
84027085 CACATATCCA
* * * *
84027095 ATCACCGTCACGAATCCTGCTAGGCACAAAGGCCCGAATACAC
1 ATCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* *
84027138 ATCACCGGCACTAAGCCTACTAGGCACGAAGGCTCGAATACAC
1 ATCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* *
84027181 ATCATCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATATA-
1 ATCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* *
84027223 AT-ACCAGCACTAGGCCTGC
1 ATCACCGGCACTAAGCCTGC
84027242 GGGATTTATC
Statistics
Matches: 91, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
41 14 0.15
42 2 0.02
43 75 0.82
ACGTcount: A:0.31, C:0.33, G:0.21, T:0.15
Consensus pattern (43 bp):
ATCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACAC
Found at i:84027267 original size:38 final size:38
Alignment explanation
Indices: 84027213--84027296 Score: 114
Period size: 38 Copynumber: 2.2 Consensus size: 38
84027203 GGCACGAAGG
* * *
84027213 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGAATATAATACCAGCACGAAGCCAGCGGGATTTAT
* *
84027251 CCCGGATATAATACCAGCACGAAGCCAGCGGGATTTAA
1 CCCGAATATAATACCAGCACGAAGCCAGCGGGATTTAT
*
84027289 CCCAAATA
1 CCCGAATA
84027297 CACATCAAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.19
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACGAAGCCAGCGGGATTTAT
Found at i:84027391 original size:355 final size:355
Alignment explanation
Indices: 84026740--84027449 Score: 1260
Period size: 355 Copynumber: 2.0 Consensus size: 355
84026730 CCGAATACAC
* * * *
84026740 ATCACCGGCATGAAGCCTGCTAGGCACGAAGGCCTGAATACACATCACCGGCACTAAGCCTGCTA
1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACACATCACCGGCACTAAGCCTACTA
84026805 GGCACGAAGGCCCGAATACACATCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATATAAT
66 GGCACGAAGGCCCGAATACACATCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATATAAT
*
84026870 ACCAGCACTAGGACTGTGGGATTTATCCCGGATATAATACCAGCACGAAGCCCACGGGATTTAAC
131 ACCAGCACTAGGACTGCGGGATTTATCCCGGATATAATACCAGCACGAAGCCCACGGGATTTAAC
* *
84026935 CCCAATACACATCAAATATCATGCATATTTAATCATATACTAATACATCTCATTCAACATATCAC
196 CCAAATACACATCAAATATCATACATATTTAATCATATACTAATACATCTCATTCAACATATCAC
84027000 ATTCGTAGTCATTTGCAACATTCAGGTATAAGCTCCATATGAACACCATCGTTTACATTTCGGTT
261 ATTCGTAGTCATTTGCAACATTCAGGTATAAGCTCCATATGAACACCATCGTTTACATTTCGGTT
*
84027065 CAAAATTCATTCATAAATATCACATATCCA
326 CAAAAGTCATTCATAAATATCACATATCCA
* *
84027095 ATCACCGTCACGAATCCTGCTAGGCACAAAGGCCCGAATACACATCACCGGCACTAAGCCTACTA
1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACACATCACCGGCACTAAGCCTACTA
* *
84027160 GGCACGAAGGCTCGAATACACATCATCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATATAAT
66 GGCACGAAGGCCCGAATACACATCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATATAAT
*
84027225 ACCAGCACTAGGCCTGCGGGATTTATCCCGGATATAATACCAGCACGAAG-CCAGCGGGATTTAA
131 ACCAGCACTAGGACTGCGGGATTTATCCCGGATATAATACCAGCACGAAGCCCA-CGGGATTTAA
*
84027289 CCCAAATACACATCAAATATCATACATATTTAATCATATATTAATACATCTCATTCAACATATCA
195 CCCAAATACACATCAAATATCATACATATTTAATCATATACTAATACATCTCATTCAACATATCA
*
84027354 CATTCGTAGTCATTTGCAACATTCGGGTATAAGCTCCATATGAACACCATCGTTTACATTTCGGT
260 CATTCGTAGTCATTTGCAACATTCAGGTATAAGCTCCATATGAACACCATCGTTTACATTTCGGT
*
84027419 TCAAAAGTCATTCATAAATATCACTTATCCA
325 TCAAAAGTCATTCATAAATATCACATATCCA
84027450 TTTCACCATT
Statistics
Matches: 338, Mismatches: 16, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
354 3 0.01
355 335 0.99
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.24
Consensus pattern (355 bp):
ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACACATCACCGGCACTAAGCCTACTA
GGCACGAAGGCCCGAATACACATCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATATAAT
ACCAGCACTAGGACTGCGGGATTTATCCCGGATATAATACCAGCACGAAGCCCACGGGATTTAAC
CCAAATACACATCAAATATCATACATATTTAATCATATACTAATACATCTCATTCAACATATCAC
ATTCGTAGTCATTTGCAACATTCAGGTATAAGCTCCATATGAACACCATCGTTTACATTTCGGTT
CAAAAGTCATTCATAAATATCACATATCCA
Found at i:84031894 original size:43 final size:43
Alignment explanation
Indices: 84031846--84032035 Score: 256
Period size: 43 Copynumber: 4.4 Consensus size: 43
84031836 ATCGAGATGA
* * * * *
84031846 GATTACATGTAAGACCATGTTTGGGACATTGTCATTG-TATTGT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTA-TAT
*
84031889 GATTACGTGTAAGACCATGTTTGGGACATTGGCATCGTTATAT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTATAT
*
84031932 GATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTTATAT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTATAT
* * *
84031975 GATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATGT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTATAT
* *
84032018 GATAACATGTAAGACCAT
1 GATTACGTGTAAGACCAT
84032036 ATCTTGGCAT
Statistics
Matches: 133, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
43 131 0.98
44 2 0.02
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTATAT
Found at i:84031991 original size:86 final size:86
Alignment explanation
Indices: 84031846--84032035 Score: 283
Period size: 86 Copynumber: 2.2 Consensus size: 86
84031836 ATCGAGATGA
* * * *
84031846 GATTACATGTAAGACCATGTTTGGGACATTGTCATTGTATTGTGATTACGTGTAAGACCATGTTT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTATGATTACGTGTAAGACCATGTCT
*
84031911 GGGACATTGGCATCGTTATAT
66 GGGACATTGGCATCGATATAT
* *
84031932 GATTACGTGTAAGACCATGTCTGGGACATTGGCATTGT-TATATGATTTCGTGTAAGACCATGTC
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT-TATGATTACGTGTAAGACCATGTC
*
84031996 TGGGACATTGGCATCGATATGT
65 TGGGACATTGGCATCGATATAT
*
84032018 GATAACATGTAAGACCAT
1 GATTACATGTAAGACCAT
84032036 ATCTTGGCAT
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
85 1 0.01
86 92 0.99
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (86 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTATGATTACGTGTAAGACCATGTCT
GGGACATTGGCATCGATATAT
Found at i:84042472 original size:39 final size:40
Alignment explanation
Indices: 84042377--84042635 Score: 310
Period size: 40 Copynumber: 6.7 Consensus size: 40
84042367 TTGAATGATG
*
84042377 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
84042415 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
84042456 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
84042495 TCCGGG-TAAG-CCCGAAGGCATTTGTGCGAGATACTAA-
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
84042532 TCCGGG-TAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
84042570 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
84042609 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
84042636 AACGAGGAGC
Statistics
Matches: 200, Mismatches: 9, Indels: 21
0.87 0.04 0.09
Matches are distributed among these distances:
37 36 0.18
38 37 0.19
39 56 0.28
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:84042521 original size:77 final size:79
Alignment explanation
Indices: 84042429--84042635 Score: 309
Period size: 77 Copynumber: 2.7 Consensus size: 79
84042419 GGACTAAGAT
84042429 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAA
*
84042494 TTCCGGG-TAAG-C
66 ATCCGGGTTAAGTC
*
84042506 CCGAAGGCATTTGTGCGAGATACTAA-TCCGGG-TAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAA
84042569 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
84042583 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-TCCGGGCTAAG-CCCGAAGGCATTTG
84042636 AACGAGGAGC
Statistics
Matches: 119, Mismatches: 4, Indels: 11
0.89 0.03 0.08
Matches are distributed among these distances:
75 36 0.30
76 12 0.10
77 49 0.41
78 5 0.04
79 3 0.03
80 14 0.12
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAA
ATCCGGGTTAAGTC
Found at i:84050471 original size:39 final size:39
Alignment explanation
Indices: 84050376--84050637 Score: 302
Period size: 39 Copynumber: 6.6 Consensus size: 39
84050366 TTGAATGATG
*
84050376 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* * *
84050414 ATCCGGACTAAGATCCGAAGGTATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
* *
84050455 TCCGGGCTAAACCCGAAGGCATTTGTGCAAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
84050494 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
84050533 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
84050572 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
84050611 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
84050638 AACGAGGAGC
Statistics
Matches: 196, Mismatches: 20, Indels: 13
0.86 0.09 0.06
Matches are distributed among these distances:
39 127 0.65
40 57 0.29
41 11 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:84050659 original size:79 final size:79
Alignment explanation
Indices: 84050428--84050670 Score: 255
Period size: 78 Copynumber: 3.1 Consensus size: 79
84050418 GGACTAAGAT
* * * ** *
84050428 CCGAAGGTATTTGTGCGAGATACTAATTCCGGGCTAAACCCGAAGGCATTTGTGCAAGAT-ACTA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAG-TGACTA
* *
84050492 ATTCCGGGCTAAG-C
65 AATCCGGGTTAAGTC
* ** *
84050506 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
84050571 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
*
84050585 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* * *
84050647 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAGTC
84050664 CCGAAGG
1 CCGAAGG
84050671 TACGTGATTT
Statistics
Matches: 146, Mismatches: 13, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
77 1 0.01
78 73 0.50
79 47 0.32
80 25 0.17
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAGTC
Found at i:84053971 original size:31 final size:31
Alignment explanation
Indices: 84053936--84053997 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
84053926 CTTTCATAGA
84053936 TTATTCATGAATAGCATAAATAAACGCAAGT
1 TTATTCATGAATAGCATAAATAAACGCAAGT
84053967 TTATTCATGAATAGCATAAATAAACGCAAGT
1 TTATTCATGAATAGCATAAATAAACGCAAGT
84053998 ACAACTTACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.45, C:0.13, G:0.13, T:0.29
Consensus pattern (31 bp):
TTATTCATGAATAGCATAAATAAACGCAAGT
Found at i:84054394 original size:48 final size:48
Alignment explanation
Indices: 84054336--84054464 Score: 141
Period size: 48 Copynumber: 2.7 Consensus size: 48
84054326 ACCACAAGCT
* **
84054336 GATGCCATGTCCTAGACAGGCCTTACAATAGCTTGTATATCACGAGGCC
1 GATG-CATGTCCCAGACAGGCCTTACAATAGCTTAAATATCACGAGGCC
* * * * *
84054385 GATGCATGTCCCAGACATGTCTTACATTGGCTTAAATATCTCGAGGCC
1 GATGCATGTCCCAGACAGGCCTTACAATAGCTTAAATATCACGAGGCC
* * * *
84054433 GATGCATGTCCCAAACATGTCTTACACTAGCT
1 GATGCATGTCCCAGACAGGCCTTACAATAGCT
84054465 CTCATGCTGT
Statistics
Matches: 69, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
48 65 0.94
49 4 0.06
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.27
Consensus pattern (48 bp):
GATGCATGTCCCAGACAGGCCTTACAATAGCTTAAATATCACGAGGCC
Found at i:84059659 original size:48 final size:48
Alignment explanation
Indices: 84059592--84059738 Score: 206
Period size: 48 Copynumber: 3.1 Consensus size: 48
84059582 GGCTATCGAT
* * *
84059592 ATCGATATGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGTC
1 ATCGATACGTGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGC
*
84059640 ATCGA-CCGATGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGC
1 ATCGATACG-TGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGC
* * * *
84059688 ATCGATATGTGATCCCATGTAAGACCATATCCAGGATATGGCATTGGC
1 ATCGATACGTGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGC
84059736 ATC
1 ATC
84059739 CTCCCATGTG
Statistics
Matches: 88, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
47 1 0.01
48 86 0.98
49 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (48 bp):
ATCGATACGTGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGC
Found at i:84063979 original size:55 final size:54
Alignment explanation
Indices: 84063892--84064146 Score: 260
Period size: 55 Copynumber: 4.8 Consensus size: 54
84063882 ATTAGGGTTT
*
84063892 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * * *
84063947 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * * *
84064002 AAATG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
* *
84064055 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TAGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * *
84064104 AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
84064147 GTACCCATGT
Statistics
Matches: 168, Mismatches: 25, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
49 39 0.23
52 6 0.04
53 40 0.24
54 12 0.07
55 68 0.40
56 3 0.02
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:84064098 original size:108 final size:110
Alignment explanation
Indices: 84063899--84064099 Score: 320
Period size: 108 Copynumber: 1.8 Consensus size: 110
84063889 TTTAAGGATA
*
84063899 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
84063964 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAATGTC
66 CCATGTCAAGACATGGCATAGATAAGTTACTATAAGGCAAATGTC
* *
84064009 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
84064071 ACCATGTCAAGACATGGCAATAG-TAAGTT
65 ACCATGTCAAGACATGGC-ATAGATAAGTT
84064100 TCAAAAGGAT
Statistics
Matches: 85, Mismatches: 4, Indels: 6
0.89 0.04 0.06
Matches are distributed among these distances:
107 3 0.04
108 45 0.53
109 10 0.12
110 27 0.32
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCATAGATAAGTTACTATAAGGCAAATGTC
Found at i:84070883 original size:40 final size:40
Alignment explanation
Indices: 84070810--84070903 Score: 102
Period size: 40 Copynumber: 2.4 Consensus size: 40
84070800 ATCTTGGTAT
84070810 CGCACACTTAGTGCCTCATATAGCCGAACCTA-TTCCAAC
1 CGCACACTTAGTGCCTCATATAGCCGAACCTATTTCCAAC
* * * * * *
84070849 TTGCACACTTAGTGCCAT-TTGTAGCTGAAGCTATTTCGAAC
1 -CGCACACTTAGTGCC-TCATATAGCCGAACCTATTTCCAAC
84070890 CGCACACTTAGTGC
1 CGCACACTTAGTGC
84070904 TGAACATAGT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
40 38 0.84
41 7 0.16
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.28
Consensus pattern (40 bp):
CGCACACTTAGTGCCTCATATAGCCGAACCTATTTCCAAC
Found at i:84079557 original size:16 final size:16
Alignment explanation
Indices: 84079536--84079568 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
84079526 TGATAAACCG
84079536 TAATTTGTACATATTT
1 TAATTTGTACATATTT
84079552 TAATTTGTACATATTT
1 TAATTTGTACATATTT
84079568 T
1 T
84079569 TATCCCCTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.58
Consensus pattern (16 bp):
TAATTTGTACATATTT
Found at i:84081906 original size:23 final size:23
Alignment explanation
Indices: 84081847--84081899 Score: 106
Period size: 23 Copynumber: 2.3 Consensus size: 23
84081837 AGACACCTAA
84081847 AGATGTCTATGAATTTATAGAGG
1 AGATGTCTATGAATTTATAGAGG
84081870 AGATGTCTATGAATTTATAGAGG
1 AGATGTCTATGAATTTATAGAGG
84081893 AGATGTC
1 AGATGTC
84081900 ACTGAATAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.34, C:0.06, G:0.26, T:0.34
Consensus pattern (23 bp):
AGATGTCTATGAATTTATAGAGG
Found at i:84090200 original size:40 final size:40
Alignment explanation
Indices: 84090170--84090378 Score: 305
Period size: 40 Copynumber: 5.3 Consensus size: 40
84090160 GGACTAAGAT
* * * *
84090170 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
84090210 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
84090250 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
84090290 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* * * * *
84090330 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGT-
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
84090368 CCGAAGGCATT
1 CCGAAGGCATT
84090379 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 11, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
38 11 0.07
39 22 0.14
40 125 0.79
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
Found at i:84090254 original size:80 final size:80
Alignment explanation
Indices: 84090117--84090378 Score: 307
Period size: 80 Copynumber: 3.3 Consensus size: 80
84090107 TTGAATGCTG
* * * * * **
84090117 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCCT
*
84090180 TTGTGCGAGATACTAAA
64 TTGTGCGAGTTACTAAA
* * *
84090197 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
84090262 GTGCGAGTTATTAAA
66 GTGCGAGTTACTAAA
* * * *
84090277 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGG-CATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
84090341 GTGTGAGTTACTAAA
66 GTGCGAGTTACTAAA
* *
84090356 ACCGGGCTATGT-CCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
84090379 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
78 11 0.07
79 24 0.15
80 117 0.74
81 6 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
GTGCGAGTTACTAAA
Found at i:84090331 original size:120 final size:120
Alignment explanation
Indices: 84090117--84090378 Score: 316
Period size: 120 Copynumber: 2.2 Consensus size: 120
84090107 TTGAATGCTG
* * *
84090117 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
84090181 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
66 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* * * * **
84090237 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* ** * *
84090300 TCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
84090356 ACCGGGCTATGT-CCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
84090379 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
118 11 0.09
119 23 0.19
120 81 0.67
121 6 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:84098120 original size:40 final size:40
Alignment explanation
Indices: 84098090--84098299 Score: 314
Period size: 40 Copynumber: 5.3 Consensus size: 40
84098080 GGACTAAGAT
* * * *
84098090 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
84098130 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
84098170 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
84098210 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* * * * *
84098250 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
84098289 CCGAAGGCATT
1 CCGAAGGCATT
84098300 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 34 0.21
40 125 0.79
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
Found at i:84098174 original size:80 final size:80
Alignment explanation
Indices: 84098037--84098299 Score: 316
Period size: 80 Copynumber: 3.3 Consensus size: 80
84098027 TTGAATGCTG
* * * * * **
84098037 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCCT
*
84098100 TTGTGCGAGATACTAAA
64 TTGTGCGAGTTACTAAA
* * *
84098117 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
84098182 GTGCGAGTTATTAAA
66 GTGCGAGTTACTAAA
* * * *
84098197 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGG-CATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
84098261 GTGTGAGTTACTAAA
66 GTGCGAGTTACTAAA
* *
84098276 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
84098300 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
79 36 0.23
80 117 0.74
81 6 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
GTGCGAGTTACTAAA
Found at i:84098251 original size:120 final size:120
Alignment explanation
Indices: 84098037--84098299 Score: 325
Period size: 120 Copynumber: 2.2 Consensus size: 120
84098027 TTGAATGCTG
* * *
84098037 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
84098101 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
66 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* * * * **
84098157 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* ** * *
84098220 TCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
84098276 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
84098300 TGAACGAGGA
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
119 35 0.29
120 81 0.66
121 6 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:84098319 original size:79 final size:80
Alignment explanation
Indices: 84098090--84098334 Score: 253
Period size: 80 Copynumber: 3.1 Consensus size: 80
84098080 GGACTAAGAT
* * * * * ** * *
84098090 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTA-TT
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAG-GAGCT
84098154 AAATCCGGGTTAAGTC
65 AAATCCGGGTTAAGTC
* * * ** ** *
84098170 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
84098235 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * *
84098250 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
* *
84098314 TATCC-GGTTAAATC
66 AATCCGGGTTAAGTC
84098328 CCGAAGG
1 CCGAAGG
84098335 TACGTGATTT
Statistics
Matches: 144, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
78 14 0.10
79 47 0.33
80 83 0.58
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTC
Found at i:84104261 original size:57 final size:58
Alignment explanation
Indices: 84104116--84104262 Score: 149
Period size: 57 Copynumber: 2.6 Consensus size: 58
84104106 ATTAACCTCA
* * * *
84104116 TTATAGAAAGGATTTAGCCCGGACGGGTAATCCTAATATAATACCTCTTGAGTATACG
1 TTATATAAAGGATTTAGCCTGGACTGGTAATCCTAATATAATACCTCTTGAGCATACG
* * * *
84104174 TTATGAT-TAGGGTTTAACCTGGACTGGTAATCCTAAT-TGAGCT-CCTC-TGAGCATACG
1 TTAT-ATAAAGGATTTAGCCTGGACTGGTAATCCTAATAT-A-ATACCTCTTGAGCATACG
* *
84104231 TTATATAAAGGATTTAGCCTGGGCTAGTAATC
1 TTATATAAAGGATTTAGCCTGGACTGGTAATC
84104263 TTGTTATACA
Statistics
Matches: 72, Mismatches: 13, Indels: 9
0.77 0.14 0.10
Matches are distributed among these distances:
56 2 0.03
57 34 0.47
58 34 0.47
59 2 0.03
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (58 bp):
TTATATAAAGGATTTAGCCTGGACTGGTAATCCTAATATAATACCTCTTGAGCATACG
Found at i:84105446 original size:21 final size:21
Alignment explanation
Indices: 84105420--84105475 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
84105410 CGGCCTGCAG
*
84105420 CACGGGTATGTCCCAGGGTCA
1 CACGGGCATGTCCCAGGGTCA
*
84105441 CACGGGCATGTCCTAGGGTCA
1 CACGGGCATGTCCCAGGGTCA
*
84105462 CACGGGCGTGTCCC
1 CACGGGCATGTCCC
84105476 TTAGACCACA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (21 bp):
CACGGGCATGTCCCAGGGTCA
Found at i:84109976 original size:27 final size:27
Alignment explanation
Indices: 84109928--84109991 Score: 80
Period size: 26 Copynumber: 2.4 Consensus size: 27
84109918 AAAAAAATAC
84109928 TATAAAAT-TTAAAAATGATAAA-TTGT
1 TATAAAATATTAAAAATGATAAACTT-T
**
84109954 TATAAAATATTAAAAATTCTAAACTTT
1 TATAAAATATTAAAAATGATAAACTTT
84109981 TA-AAAATATTA
1 TATAAAATATTA
84109992 TAACAAAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
26 17 0.50
27 15 0.44
28 2 0.06
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.39
Consensus pattern (27 bp):
TATAAAATATTAAAAATGATAAACTTT
Found at i:84110489 original size:18 final size:18
Alignment explanation
Indices: 84110462--84110515 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
84110452 TTAAATTTTT
*
84110462 ATTTTTTATTTTTAATAC
1 ATTTTATATTTTTAATAC
* *
84110480 ATTTTATATTTATAATAT
1 ATTTTATATTTTTAATAC
* *
84110498 ATTTATAAATGTTTAATA
1 ATTT-TATATTTTTAATA
84110516 GTTTAAAAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
18 19 0.66
19 10 0.34
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (18 bp):
ATTTTATATTTTTAATAC
Found at i:84111617 original size:3 final size:3
Alignment explanation
Indices: 84111611--84111646 Score: 54
Period size: 3 Copynumber: 11.3 Consensus size: 3
84111601 AGAAAGGAGG
84111611 AGA AGA AGA AGAA AGA AGA AGA AGGA AGA AGA AGA A
1 AGA AGA AGA AG-A AGA AGA AGA A-GA AGA AGA AGA A
84111647 AAAAAAGGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
3 25 0.81
4 6 0.19
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:84111626 original size:10 final size:10
Alignment explanation
Indices: 84111591--84111643 Score: 56
Period size: 10 Copynumber: 5.5 Consensus size: 10
84111581 ACGGGTGAGA
*
84111591 AAGAAAGGAG
1 AAGAAAGAAG
*
84111601 -AGAAAGGAG
1 AAGAAAGAAG
*
84111610 GAG-AAGAAG
1 AAGAAAGAAG
84111619 AAGAAAGAAG
1 AAGAAAGAAG
*
84111629 AAGAAGGAAG
1 AAGAAAGAAG
84111639 AAGAA
1 AAGAA
84111644 GAAAAAAAAG
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
9 16 0.42
10 22 0.58
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (10 bp):
AAGAAAGAAG
Found at i:84111627 original size:13 final size:13
Alignment explanation
Indices: 84111611--84111646 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
84111601 AGAAAGGAGG
84111611 AGAAGAAGAAGAA
1 AGAAGAAGAAGAA
*
84111624 AGAAGAAGAAGGA
1 AGAAGAAGAAGAA
84111637 AGAAGAAGAA
1 AGAAGAAGAA
84111647 AAAAAAGGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (13 bp):
AGAAGAAGAAGAA
Found at i:84112046 original size:115 final size:114
Alignment explanation
Indices: 84111915--84112351 Score: 667
Period size: 115 Copynumber: 3.9 Consensus size: 114
84111905 ATTTATAGTT
* *
84111915 GATTTGGTTATATAAATTGTTAGTGTTTAGTAGTTTAGTGTATTAGTGTGTTGTGATTTTTTTAG
1 GATTAGGTTATATAAATTGTTAGTGTTTAGTAGTTTAGTGTATTAGTGTATTGTGATTTTTTTAG
*
84111980 TAATATATTTTAAAAAAAATAATTTTATAGCTATTTTATTAATAATTTAA
66 TAATATATTTT-AAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
* * *
84112030 GATTAGGTTATATAAATTGTTAGTGTTTAGTGGTTTA--GTATTAGCGTATTGT-AATTTTTTAG
1 GATTAGGTTATATAAATTGTTAGTGTTTAGTAGTTTAGTGTATTAGTGTATTGTGATTTTTTTAG
*
84112092 TAATATATTTTAAAAAAATATTTTTATAGCTATTTTATTAGTAATTTAA
66 TAATATATTTTAAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
* *
84112141 GATTAGGTTATATAAATTATTAGTGTTTAGTGGTTTAGTGTATTAGTGTATTGTGAATTTTTTTA
1 GATTAGGTTATATAAATTGTTAGTGTTTAGTAGTTTAGTGTATTAGTGTATTGTG-ATTTTTTTA
*
84112206 GTAATATATTTTAAAAAAATATTTTTATAGCTATTTTATTAGTAATTTAA
65 GTAATATATTTTAAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
* *
84112256 GATTAGGTTATAT--ATTGTTAGTGTTT--TAGTGT-GTGTATTAATGTATTGTGATTTTTTTTA
1 GATTAGGTTATATAAATTGTTAGTGTTTAGTAGTTTAGTGTATTAGTGTATTGTGA-TTTTTTTA
*
84112316 GTAATGTA-TTTAAAAAAATAATTTTATAGCTATTTT
65 GTAATATATTTTAAAAAAATAATTTTATAGCTATTTT
84112352 GTGTTAGTAT
Statistics
Matches: 301, Mismatches: 16, Indels: 16
0.90 0.05 0.05
Matches are distributed among these distances:
109 28 0.09
110 32 0.11
111 76 0.25
112 20 0.07
113 39 0.13
115 106 0.35
ACGTcount: A:0.32, C:0.01, G:0.15, T:0.51
Consensus pattern (114 bp):
GATTAGGTTATATAAATTGTTAGTGTTTAGTAGTTTAGTGTATTAGTGTATTGTGATTTTTTTAG
TAATATATTTTAAAAAAATAATTTTATAGCTATTTTATTAGTAATTTAA
Found at i:84112438 original size:15 final size:16
Alignment explanation
Indices: 84112409--84112440 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
84112399 TGTGATTTTT
84112409 TAATGTAATTTTTATA
1 TAATGTAATTTTTATA
84112425 TAATGTAA-TTTTATA
1 TAATGTAATTTTTATA
84112440 T
1 T
84112441 TATTATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (16 bp):
TAATGTAATTTTTATA
Found at i:84114310 original size:14 final size:14
Alignment explanation
Indices: 84114291--84114320 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
84114281 TTGTTGCTAA
84114291 GTTAGGAAACTTGG
1 GTTAGGAAACTTGG
84114305 GTTAGGAAACTTGG
1 GTTAGGAAACTTGG
84114319 GT
1 GT
84114321 ATGGTTCTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.07, G:0.37, T:0.30
Consensus pattern (14 bp):
GTTAGGAAACTTGG
Found at i:84133974 original size:22 final size:20
Alignment explanation
Indices: 84133934--84133982 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
84133924 TAATTTAAAA
84133934 TATAAAAATTTATTAATATG
1 TATAAAAATTTATTAATATG
* *
84133954 TATATAAATTTATTAATATA
1 TATAAAAATTTATTAATATG
*
84133974 TGTAAAAAT
1 TATAAAAAT
84133983 AACTTTTACG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (20 bp):
TATAAAAATTTATTAATATG
Found at i:84134095 original size:20 final size:20
Alignment explanation
Indices: 84134070--84134109 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
84134060 AAATATTTTC
84134070 AGTAAATCATTTTCCAGAAA
1 AGTAAATCATTTTCCAGAAA
84134090 AGTAAATCATTTTCCAGAAA
1 AGTAAATCATTTTCCAGAAA
84134110 TTATTTTCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.15, G:0.10, T:0.30
Consensus pattern (20 bp):
AGTAAATCATTTTCCAGAAA
Found at i:84134116 original size:34 final size:33
Alignment explanation
Indices: 84134060--84134124 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 33
84134050 AAACACCAGA
84134060 AAATATTTTCAGTAAATCATTTTCCAGAAAAGT
1 AAATATTTTCAGTAAATCATTTTCCAGAAAAGT
* *
84134093 AAATCATTTTCCAG-AAATTATTTTCCGGAAAA
1 AAAT-ATTTT-CAGTAAATCATTTTCCAGAAAA
84134125 CATTTTACTG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 4 0.14
34 21 0.75
35 3 0.11
ACGTcount: A:0.42, C:0.14, G:0.09, T:0.35
Consensus pattern (33 bp):
AAATATTTTCAGTAAATCATTTTCCAGAAAAGT
Found at i:84136550 original size:13 final size:14
Alignment explanation
Indices: 84136531--84136569 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
84136521 CTACCCAATA
84136531 AAAGAAGAAGAGAG
1 AAAGAAGAAGAGAG
84136545 -AAGAAGAAGA-AG
1 AAAGAAGAAGAGAG
*
84136557 AAAAAAGAAGAGA
1 AAAGAAGAAGAGA
84136570 ATTTGTGTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
12 2 0.09
13 19 0.86
14 1 0.05
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (14 bp):
AAAGAAGAAGAGAG
Found at i:84136553 original size:16 final size:16
Alignment explanation
Indices: 84136532--84136567 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
84136522 TACCCAATAA
* *
84136532 AAGAAGAAGAGAGAAG
1 AAGAAGAAGAAAAAAG
84136548 AAGAAGAAGAAAAAAG
1 AAGAAGAAGAAAAAAG
84136564 AAGA
1 AAGA
84136568 GAATTTGTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (16 bp):
AAGAAGAAGAAAAAAG
Found at i:84138888 original size:19 final size:19
Alignment explanation
Indices: 84138864--84138917 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
84138854 CTTTAGAGAG
*
84138864 TCACACGCCCGTGTGGGTT
1 TCACACGCCCATGTGGGTT
84138883 TCACACGCCCATGTGGGTT
1 TCACACGCCCATGTGGGTT
84138902 TCACACGCCCATGTGG
1 TCACACGCCCATGTGG
84138918 CTTAGACATG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.15, C:0.33, G:0.28, T:0.24
Consensus pattern (19 bp):
TCACACGCCCATGTGGGTT
Found at i:84151289 original size:40 final size:39
Alignment explanation
Indices: 84151180--84151432 Score: 273
Period size: 40 Copynumber: 6.4 Consensus size: 39
84151170 ATGATAACCG
* * *
84151180 GGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TCC
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCC
* *
84151219 GGGC-AAGTCCCGAAGGCATTGGTGCAAGTTACTATATCC
1 -GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* ** *
84151258 AGGCTAATTAACGAAGGCATTTGTGCGAGTTACTATATCTG
1 -GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC-C
84151299 GGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTATATCC
1 GGCTAAGTCCCGAAGGCATTTGTGCG-AGTTACTATATCC
*
84151338 GAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
1 G-GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* *
84151378 GGGCTATGTCCCGAAGGCATTTGAGC-AG-TAGCTATATCC
1 -GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
**
84151417 GGCTAAACCCCGAAGG
1 GGCTAAGTCCCGAAGG
84151433 TACTTGGTTG
Statistics
Matches: 183, Mismatches: 22, Indels: 18
0.82 0.10 0.08
Matches are distributed among these distances:
38 16 0.09
39 44 0.24
40 120 0.66
41 3 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:84151393 original size:120 final size:119
Alignment explanation
Indices: 84151179--84151400 Score: 306
Period size: 120 Copynumber: 1.9 Consensus size: 119
84151169 GATGATAACC
* *
84151179 GGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCAAGTCCCGAAGGCATTGGTGC
1 GGGCTAAGTCCCGAAGGCATTTGCGCAAGTGACTAGTTCCGAGCAAGTCCCGAAGGCATTGGTGC
*
84151244 AAGTTACTATATCCAGGCTAATTAACGAAGGCATTTGTGCGAGTTACTATATCT
66 AAGTTACTATAACCAGGCTAATTAACGAAGGCATTTGTGCGAGTTACTATATCT
* *
84151298 GGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTA-TATCCGAGCTAAGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTGCGC-AAGTGACTAGT-TCCGAGC-AAGTCCCGAAGGCATTGG
* * **
84151361 TGCGAGTTACTATAACCGGGCT-ATGTCCCGAAGGCATTTG
63 TGCAAGTTACTATAACCAGGCTAAT-TAACGAAGGCATTTG
84151401 AGCAGTAGCT
Statistics
Matches: 90, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
118 1 0.01
119 37 0.41
120 52 0.58
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (119 bp):
GGGCTAAGTCCCGAAGGCATTTGCGCAAGTGACTAGTTCCGAGCAAGTCCCGAAGGCATTGGTGC
AAGTTACTATAACCAGGCTAATTAACGAAGGCATTTGTGCGAGTTACTATATCT
Found at i:84153991 original size:23 final size:23
Alignment explanation
Indices: 84153961--84154007 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
84153951 TAGATTCCAT
84153961 GACCGCTCCTGTTACAAGTGCGG
1 GACCGCTCCTGTTACAAGTGCGG
84153984 GACCGCTCCTGTTACAAGTGCGG
1 GACCGCTCCTGTTACAAGTGCGG
84154007 G
1 G
84154008 TCAGCCGACC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.17, C:0.30, G:0.32, T:0.21
Consensus pattern (23 bp):
GACCGCTCCTGTTACAAGTGCGG
Found at i:84159443 original size:40 final size:40
Alignment explanation
Indices: 84159342--84159596 Score: 362
Period size: 40 Copynumber: 6.5 Consensus size: 40
84159332 TGGATGATAA
* * *
84159342 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* *
84159382 CCAGGC-AAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
84159421 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
84159461 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTTACTATAT
*
84159501 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
84159541 CCGGGCTAAGTCCCGAAGGCATTTGAGC-AG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
84159580 CC-GGCTAA-ACCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
84159597 TACTTGGTTG
Statistics
Matches: 199, Mismatches: 11, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
37 8 0.04
38 9 0.05
39 43 0.22
40 137 0.69
41 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:84169257 original size:11 final size:11
Alignment explanation
Indices: 84169243--84169287 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
84169233 AGATAAATAT
84169243 TATTTTATTAA
1 TATTTTATTAA
*
84169254 TATTTTAATGAGA
1 TATTTT-ATTA-A
*
84169267 TATTTTATTAT
1 TATTTTATTAA
84169278 TATTTTATTA
1 TATTTTATTA
84169288 GCATATAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.62
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:84171157 original size:46 final size:46
Alignment explanation
Indices: 84171098--84171314 Score: 290
Period size: 46 Copynumber: 4.7 Consensus size: 46
84171088 TGAAATATGG
* * * *
84171098 AAGACCATAGTTGAAAAATACCATGACAACATGACGGGAAATGAAT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAAT
** *
84171144 AAGACCATGGTTGAAAGATACCATGGCGGCATGACATGAAATGAAT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAAT
* *
84171190 AAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAAGAAT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAAT
* * *
84171236 ATGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAAT
* * * *
84171282 AAGACCATAGTTGAAAGACACTATGGCATCATG
1 AAGACCATGGTTGAAAGATACCATGGCAACATG
84171315 TCAAAGATAA
Statistics
Matches: 151, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 151 1.00
ACGTcount: A:0.43, C:0.16, G:0.23, T:0.19
Consensus pattern (46 bp):
AAGACCATGGTTGAAAGATACCATGGCAACATGACAGGAAATGAAT
Found at i:84184599 original size:43 final size:43
Alignment explanation
Indices: 84184552--84184674 Score: 126
Period size: 43 Copynumber: 2.9 Consensus size: 43
84184542 TATCACATTT
* * *
84184552 CGATGTCACTGTCCCACACAGGGTCTTACGCG-AAGTCG-ATTAA
1 CGATGTCACTGTCCCACACAAGGTCTTACACGTAA-TCGCAAT-A
* *
84184595 CGATGTCGA-TGTCCCACACATGGTCTTACATGTAATCGCAATA
1 CGATGTC-ACTGTCCCACACAAGGTCTTACACGTAATCGCAATA
* * *
84184638 CAATGCCACTGTCCCACACAAGGTCTTACATGTAATC
1 CGATGTCACTGTCCCACACAAGGTCTTACACGTAATC
84184675 ACATCTCGGT
Statistics
Matches: 69, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
42 1 0.01
43 63 0.91
44 5 0.07
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (43 bp):
CGATGTCACTGTCCCACACAAGGTCTTACACGTAATCGCAATA
Found at i:84192324 original size:15 final size:16
Alignment explanation
Indices: 84192292--84192324 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
84192282 CTATTCTATT
84192292 TTTCTTCACCTATTCC
1 TTTCTTCACCTATTCC
*
84192308 TTTCTTCCCCT-TTCC
1 TTTCTTCACCTATTCC
84192323 TT
1 TT
84192325 AGCCATACCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.06, C:0.39, G:0.00, T:0.55
Consensus pattern (16 bp):
TTTCTTCACCTATTCC
Found at i:84194544 original size:37 final size:37
Alignment explanation
Indices: 84194494--84194620 Score: 177
Period size: 37 Copynumber: 3.5 Consensus size: 37
84194484 ATTTTTAACA
*
84194494 TGTTATC-GATTGGATTAGCTCTTATGAGCATTAGGCG
1 TGTTATCAG-TTGGATTAGCTCTTATGAGCATTTGGCG
*
84194531 TGTTATCGGTTGGATTAGCTCTTATGAGCATTTGGCG
1 TGTTATCAGTTGGATTAGCTCTTATGAGCATTTGGCG
* * **
84194568 TGTTATCAGTTGGATTAGCTTTTATAAGTGTTTGGCG
1 TGTTATCAGTTGGATTAGCTCTTATGAGCATTTGGCG
84194605 TGTT-TCAGTTGGATTA
1 TGTTATCAGTTGGATTA
84194621 CTTGTGTACT
Statistics
Matches: 83, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
36 12 0.14
37 70 0.84
38 1 0.01
ACGTcount: A:0.19, C:0.11, G:0.28, T:0.43
Consensus pattern (37 bp):
TGTTATCAGTTGGATTAGCTCTTATGAGCATTTGGCG
Found at i:84205382 original size:46 final size:46
Alignment explanation
Indices: 84205295--84205421 Score: 137
Period size: 46 Copynumber: 2.8 Consensus size: 46
84205285 CTTAATAATT
* * * * *
84205295 TTGTATTCTCGAGTCTGCAACATATATAGGAGCTCATAACCTATTC
1 TTGTATTCTCAAGTCTGCAAAATATATAAGAACTCACAACCTATTC
* * *
84205341 TTGTATTCTCAAGTTTGTAAAATATGTAAGAACTCACAACCTATTC
1 TTGTATTCTCAAGTCTGCAAAATATATAAGAACTCACAACCTATTC
* * * **
84205387 TTATATTCTCAAGTCCGCAACATATGCAAGAACTC
1 TTGTATTCTCAAGTCTGCAAAATATATAAGAACTC
84205422 GAAACCTGGA
Statistics
Matches: 67, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
46 67 1.00
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34
Consensus pattern (46 bp):
TTGTATTCTCAAGTCTGCAAAATATATAAGAACTCACAACCTATTC
Found at i:84215630 original size:47 final size:47
Alignment explanation
Indices: 84215562--84215730 Score: 170
Period size: 46 Copynumber: 3.6 Consensus size: 47
84215552 TGCGTAAACT
*
84215562 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA-GA-GCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTAAGACGAGGCC
* * *
84215608 AGTGTAAGACCATGTCCGGGACATGGAATCGG--CATTAAGACGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCCATTAAGACGAG-GCC
** *
84215656 AGTGTAAGACATGTCTGGGACATGCATCGG-CC-TCGAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCCATTAAGACG-AGGCC
* *
84215702 AGTGTAAGACATGCCTAGGACATGCATCG
1 AGTGTAAGACATGTCTGGGACATGCATCG
84215731 ACTACGAGAT
Statistics
Matches: 104, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
45 7 0.07
46 52 0.50
47 28 0.27
48 17 0.16
ACGTcount: A:0.28, C:0.21, G:0.30, T:0.21
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCCATTAAGACGAGGCC
Found at i:84215706 original size:46 final size:47
Alignment explanation
Indices: 84215562--84215827 Score: 231
Period size: 47 Copynumber: 5.7 Consensus size: 47
84215552 TGCGTAAACT
* *
84215562 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGA-GATGAGAGCC
* * * ** * * *
84215608 AGTGTAAGACCATGTCCGGGACATGGAATCGGCATTAAGACGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGCCTCGAGATGAGAGCC
*
84215656 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGACGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAGATG-AGAGCC
* * * * *
84215702 AGTGTAAGACATGCCTAGGACAT-GCATC-GACTACGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCT-CGAGATGAGAGCC
* * * * *
84215748 AGTGTAAGACCATGTTTGGGATATGGCATC-GACTTGAGATGTGAGCC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGCCTCGAGATGAGAGCC
*
84215795 AGTGTAAGACTATGTCTGGAACATGGCATCGGC
1 AGTGTAAGAC-ATGTCTGGGACATGGCATCGGC
84215828 ACCTTACCCA
Statistics
Matches: 177, Mismatches: 33, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
45 4 0.02
46 69 0.39
47 71 0.40
48 32 0.18
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAGATGAGAGCC
Found at i:84215810 original size:140 final size:141
Alignment explanation
Indices: 84215562--84215827 Score: 331
Period size: 140 Copynumber: 1.9 Consensus size: 141
84215552 TGCGTAAACT
* * * *
84215562 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCCGG
1 AGTGTAAGACATGCCTAGGACATGCATCGACCACATGATGAGAGCCAGTGTAAGACCATGTCCGG
* * * *
84215627 GACATGGAATCGGCATTAAGACGAGTGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCG
66 GACATGGAATCGACATTAAGACGAGAGCCAGTGTAAGACATGTCTGGAACATGGCATCGGCCTCG
84215691 AGACGTAAGCC
131 AGACGTAAGCC
* * * **
84215702 AGTGTAAGACATGCCTAGGACATGCATCGACTACGA-GATGATAGTCAGTGTAAGACCATGTTTG
1 AGTGTAAGACATGCCTAGGACATGCATCGACCAC-ATGATGAGAGCCAGTGTAAGACCATGTCCG
* * * * *
84215766 GGATATGGCATCGAC-TTGAGATGTGAGCCAGTGTAAGACTATGTCTGGAACATGGCATCGGC
65 GGACATGGAATCGACATTAAGACGAGAGCCAGTGTAAGAC-ATGTCTGGAACATGGCATCGGC
84215828 ACCTTACCCA
Statistics
Matches: 105, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
139 19 0.18
140 77 0.73
141 9 0.09
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (141 bp):
AGTGTAAGACATGCCTAGGACATGCATCGACCACATGATGAGAGCCAGTGTAAGACCATGTCCGG
GACATGGAATCGACATTAAGACGAGAGCCAGTGTAAGACATGTCTGGAACATGGCATCGGCCTCG
AGACGTAAGCC
Found at i:84227804 original size:27 final size:27
Alignment explanation
Indices: 84227774--84227942 Score: 182
Period size: 27 Copynumber: 6.3 Consensus size: 27
84227764 GGTAAATTGG
* * *
84227774 TAATTTTACCCCACAAGGGTATCTCGA
1 TAATTTTACCCTACAGGGGTATTTCGA
* * *
84227801 TAATTCTACCCTATAGGGGTATTTCAA
1 TAATTTTACCCTACAGGGGTATTTCGA
* *
84227828 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTTTACCCTACAGGGGTATTTCGA
*
84227855 T-ATTTCTACCCTACAGGGGTATTTCGG
1 TAATTT-TACCCTACAGGGGTATTTCGA
*
84227882 T-ATTTCTACCCTATAGGGGTATTTCGA
1 TAATTT-TACCCTACAGGGGTATTTCGA
* *
84227909 T-ATTTCTACCCTACAAGGGTATTTCGG
1 TAATTT-TACCCTACAGGGGTATTTCGA
84227936 TAATTTT
1 TAATTTT
84227943 GTAAATCGAG
Statistics
Matches: 125, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
26 3 0.02
27 118 0.94
28 4 0.03
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (27 bp):
TAATTTTACCCTACAGGGGTATTTCGA
Found at i:84227818 original size:54 final size:54
Alignment explanation
Indices: 84227772--84227942 Score: 218
Period size: 54 Copynumber: 3.2 Consensus size: 54
84227762 GGGGTAAATT
* * * *
84227772 GGTAATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTCGATATTTCTACCCTATAGGGGTATTTC
** * * *
84227826 AATAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTCGATATTTCTACCCTATAGGGGTATTTC
* * *
84227880 GGT-ATTTCTACCCTATAGGGGTATTTCGATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAGGGGTATTTCGATATTTCTACCCTATAGGGGTATTTC
84227934 GGTAATTTT
1 GGTAATTTT
84227943 GTAAATCGAG
Statistics
Matches: 100, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
53 3 0.03
54 93 0.93
55 4 0.04
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (54 bp):
GGTAATTTTACCCTACAGGGGTATTTCGATATTTCTACCCTATAGGGGTATTTC
Found at i:84227876 original size:81 final size:80
Alignment explanation
Indices: 84227776--84227942 Score: 244
Period size: 81 Copynumber: 2.1 Consensus size: 80
84227766 TAAATTGGTA
84227776 ATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTATAGGGGTATTTCAATAATTCTACCCTA
1 ATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTATAGGGGTATTTCAATAATTCTACCCTA
*
84227841 CAGGGGTATTTCGGT
66 CAAGGGTATTTCGGT
* * * * * * *
84227856 ATTTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTATAGGGGTATTTCGATATTTCTACCCT
1 ATTT-TACCCCACAAGGGTATCTCGATAATTCTACCCTATAGGGGTATTTCAATAATTCTACCCT
84227921 ACAAGGGTATTTCGGT
65 ACAAGGGTATTTCGGT
84227937 AATTTT
1 -ATTTT
84227943 GTAAATCGAG
Statistics
Matches: 77, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
80 4 0.05
81 69 0.90
82 4 0.05
ACGTcount: A:0.24, C:0.21, G:0.18, T:0.37
Consensus pattern (80 bp):
ATTTTACCCCACAAGGGTATCTCGATAATTCTACCCTATAGGGGTATTTCAATAATTCTACCCTA
CAAGGGTATTTCGGT
Found at i:84228172 original size:81 final size:80
Alignment explanation
Indices: 84227976--84228238 Score: 303
Period size: 81 Copynumber: 3.2 Consensus size: 80
84227966 TTCTGTAAAT
* * * * * **
84227976 CAGGGGTACTTTGGTAATTTTACAAGCTGAGGATATTTCAATAATTTTACAAGTC-GAGGGTATT
1 CAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT-TATAATTTTACAAACCAG-GGGTATT
** * *
84228040 TCAGTAATTTCACAAAT
64 TTGGTAATTTTACAAAC
*
84228057 CAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGGTATTT
1 CAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTT-ATAATTTTACAAACCAGGGGTATTT
*
84228122 TGGCAATTTTACAAAC
65 TGGTAATTTTACAAAC
* * *
84228138 CAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTT
1 CAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTA-TAATTTTACAAACCAGGGGTATTT
* **
84228203 TGATAATTTTGTAAAC
65 TGGTAATTTTACAAAC
*
84228219 CAAGGGTATTTTGGTAATTT
1 CAGGGGTATTTTGGTAATTT
84228239 GGTAAACTAA
Statistics
Matches: 157, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
80 1 0.01
81 155 0.99
82 1 0.01
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.38
Consensus pattern (80 bp):
CAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTATAATTTTACAAACCAGGGGTATTTT
GGTAATTTTACAAAC
Found at i:84228245 original size:27 final size:27
Alignment explanation
Indices: 84227976--84228238 Score: 269
Period size: 27 Copynumber: 9.7 Consensus size: 27
84227966 TTCTGTAAAT
* *
84227976 CAGGGGTACTTTGGTAATTTTAC-AAG
1 CAGGGGTATTTTGGTAATTTTACAAAC
* * *** **
84228002 CTGAGGATATTTCAATAATTTTACAAGT
1 CAG-GGGTATTTTGGTAATTTTACAAAC
** * *
84228030 C-GAGGGTATTTCAGTAATTTCACAAAT
1 CAG-GGGTATTTTGGTAATTTTACAAAC
84228057 CAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* *
84228084 TAGGGGTATTTTGATAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
84228111 CAGGGGTATTTTGGCAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
84228138 CAGGGGTATTTTGGTAATTTTATAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* * *
84228165 AAAGGGTATTTTAGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* * **
84228192 TAGGGGTATTTTGATAATTTTGTAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
84228219 CAAGGGTATTTTGGTAATTT
1 CAGGGGTATTTTGGTAATTT
84228239 GGTAAACTAA
Statistics
Matches: 198, Mismatches: 36, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
26 2 0.01
27 193 0.97
28 3 0.02
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.38
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAC
Found at i:84231607 original size:39 final size:41
Alignment explanation
Indices: 84231506--84231689 Score: 206
Period size: 39 Copynumber: 4.6 Consensus size: 41
84231496 TTGAATGATG
* *
84231506 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA
*
84231546 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAATA
*
84231586 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
* *
84231625 TCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
* *
84231664 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
84231690 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 9, Indels: 18
0.82 0.06 0.12
Matches are distributed among these distances:
38 1 0.01
39 69 0.55
40 43 0.34
41 12 0.10
42 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
Found at i:84231642 original size:79 final size:80
Alignment explanation
Indices: 84231506--84231689 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 80
84231496 TTGAATGATG
*
84231506 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCA-T
84231570 TGTGCGAGATACTA-A
65 TGTGCGAGATACTATA
* * * **
84231585 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
84231647 TTGTGCGAGTTACTATA
64 TTGTGCGAGATACTATA
* *
84231664 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
84231690 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
78 24 0.26
79 49 0.54
80 18 0.20
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
GTGCGAGATACTATA
Found at i:84231712 original size:78 final size:79
Alignment explanation
Indices: 84231559--84231722 Score: 201
Period size: 78 Copynumber: 2.1 Consensus size: 79
84231549 GGACTAAGAT
* **
84231559 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
84231624 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
84231638 CCGAAGGCA-TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
84231700 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
84231716 CCGAAGG
1 CCGAAGG
84231723 TACGTGATTT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
77 2 0.03
78 38 0.51
79 34 0.46
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:84239697 original size:79 final size:81
Alignment explanation
Indices: 84239550--84239735 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 81
84239540 TTGAATGATG
* * *
84239550 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTATAGTGACCATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AGAGTGACCAAATCCGGACTAAGATCCGAAGGCAA
84239614 TTGTGCGAGATACTA-A
65 TTGTGCGAGATACTATA
* * **
84239630 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TGCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCAGAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
84239692 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
84239710 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
84239736 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
78 1 0.01
79 48 0.53
80 24 0.26
81 18 0.20
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAGAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:84239698 original size:40 final size:40
Alignment explanation
Indices: 84239550--84239735 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
84239540 TTGAATGATG
* * * *
84239550 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTATAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC--GAGTTACTAAA
* * *
84239591 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
84239631 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
84239670 TCCGGGTTAAGTGCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
84239711 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
84239736 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 11
0.81 0.11 0.07
Matches are distributed among these distances:
39 35 0.28
40 60 0.49
41 20 0.16
42 8 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:84239757 original size:79 final size:79
Alignment explanation
Indices: 84239604--84239768 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
84239594 GGACTAAGAT
* * **
84239604 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
84239669 ATCCGGGTTAAGTG
66 ATCCGGGTTAAATG
* *
84239683 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
84239746 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATG
84239762 CCGAAGG
1 CCGAAGG
84239769 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATG
Found at i:84248172 original size:19 final size:20
Alignment explanation
Indices: 84248137--84248174 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
84248127 TTAAATCAAC
*
84248137 AACTAATATGTAATGAAATA
1 AACTAATATGCAATGAAATA
84248157 AACTAA-ATGCAATGAAAT
1 AACTAATATGCAATGAAAT
84248175 GATTTAGAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.55, C:0.08, G:0.11, T:0.26
Consensus pattern (20 bp):
AACTAATATGCAATGAAATA
Found at i:84257153 original size:50 final size:50
Alignment explanation
Indices: 84257033--84257326 Score: 331
Period size: 50 Copynumber: 5.8 Consensus size: 50
84257023 GTTGTGAGAA
* * *** *
84257033 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAAATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGG--TTAGGT
* *
84257085 CACGTGTGTAGTACTAAGTGCAGACTACTACGTGTACCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
* * * * * * * *
84257135 CGCATGTATAGTACTAAGTGCAGGCTGCTATGCGTACCTGATAGTTTTA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-G-GTTAGGT
* *
84257186 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
* *
84257236 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
* * *
84257285 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
84257327 AGCTTCGGTT
Statistics
Matches: 203, Mismatches: 36, Indels: 9
0.82 0.15 0.04
Matches are distributed among these distances:
49 44 0.22
50 84 0.41
51 36 0.18
52 39 0.19
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
Found at i:84257220 original size:26 final size:26
Alignment explanation
Indices: 84257191--84257271 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 26
84257181 TTAATCACAT
84257191 GTGTAGTACTAAGTGCAGGCTACTAC
1 GTGTAGTACTAAGTGCAGGCTACTAC
* *
84257217 GTGTA-T-C-AAATGGTTAGG-T-C-AC
1 GTGTAGTACTAAGT-G-CAGGCTACTAC
84257239 GTGTGTAGTACTAAGTGCAGGCTACTAC
1 --GTGTAGTACTAAGTGCAGGCTACTAC
84257267 GTGTA
1 GTGTA
84257272 CCAGATTGTT
Statistics
Matches: 41, Mismatches: 4, Indels: 20
0.63 0.06 0.31
Matches are distributed among these distances:
22 2 0.05
23 4 0.10
24 8 0.20
25 8 0.20
26 13 0.32
27 4 0.10
28 2 0.05
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (26 bp):
GTGTAGTACTAAGTGCAGGCTACTAC
Found at i:84257230 original size:101 final size:99
Alignment explanation
Indices: 84257084--84257323 Score: 309
Period size: 101 Copynumber: 2.4 Consensus size: 99
84257074 TGGTTTTAGG
* * * *
84257084 TCACGTGTGTAGTACTAAGTGCAGACTACTACGTGTACCAGATGGTTAGGTCGCATGTATAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATGGTTAGGTCACATGTATAGTAC
* * * *
84257149 TAAGTGCAGGCTGCTATGCGTACCTGATAGTTTTAA
66 TAAGTGCAGGCTACTACGCGTACCAGAT--TGTTAA
* * *
84257185 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGGTCACGTGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATGGTTAGGTCACATGTATAGTAC
* **
84257250 TAAGTGCAGGCTACTACGTGTACCAGATTGTTGG
66 TAAGTGCAGGCTACTACGCGTACCAGATTGTTAA
* * *
84257284 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA
84257324 GATAGCTTCG
Statistics
Matches: 121, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
99 39 0.32
101 82 0.68
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.30
Consensus pattern (99 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATGGTTAGGTCACATGTATAGTAC
TAAGTGCAGGCTACTACGCGTACCAGATTGTTAA
Found at i:84257547 original size:16 final size:15
Alignment explanation
Indices: 84257526--84257555 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
84257516 GAATTGAGTA
84257526 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
84257542 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
84257556 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:84261883 original size:21 final size:22
Alignment explanation
Indices: 84261847--84261890 Score: 81
Period size: 21 Copynumber: 2.0 Consensus size: 22
84261837 TATAAATAGG
84261847 CTCCTAAACACTTGTTAAATGA
1 CTCCTAAACACTTGTTAAATGA
84261869 CTCCTAAAC-CTTGTTAAATGA
1 CTCCTAAACACTTGTTAAATGA
84261890 C
1 C
84261891 AACTTTCATA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 13 0.59
22 9 0.41
ACGTcount: A:0.34, C:0.25, G:0.09, T:0.32
Consensus pattern (22 bp):
CTCCTAAACACTTGTTAAATGA
Found at i:84277643 original size:8 final size:8
Alignment explanation
Indices: 84277630--84277655 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
84277620 TTATTAGCTC
84277630 TTATTATT
1 TTATTATT
84277638 TTATTATT
1 TTATTATT
84277646 TTATTATT
1 TTATTATT
84277654 TT
1 TT
84277656 GAATTTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (8 bp):
TTATTATT
Found at i:84277663 original size:16 final size:16
Alignment explanation
Indices: 84277630--84277683 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 16
84277620 TTATTAGCTC
*
84277630 TTATTATTTTATTATT
1 TTATTATTTTAATATT
*
84277646 TTATTATTTTGAATTTT
1 TTATTATTTT-AATATT
*
84277663 TTATAATTATTAAGTATT
1 TTATTATT-TTAA-TATT
84277681 TTA
1 TTA
84277684 CGTTATTTAG
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
16 10 0.32
17 13 0.42
18 8 0.26
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.67
Consensus pattern (16 bp):
TTATTATTTTAATATT
Found at i:84278466 original size:18 final size:18
Alignment explanation
Indices: 84278445--84278485 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
84278435 AAAATGATCG
*
84278445 AAAAAATGAAAAATAGGA
1 AAAAAACGAAAAATAGGA
*
84278463 AAAATACGAAAAATAGGA
1 AAAAAACGAAAAATAGGA
84278481 AAAAA
1 AAAAA
84278486 TATTTTTTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.73, C:0.02, G:0.15, T:0.10
Consensus pattern (18 bp):
AAAAAACGAAAAATAGGA
Found at i:84278487 original size:10 final size:9
Alignment explanation
Indices: 84278452--84278484 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
84278442 TCGAAAAAAT
84278452 GAAAAATAG
1 GAAAAATAG
*
84278461 GAAAAATAC
1 GAAAAATAG
84278470 GAAAAATAG
1 GAAAAATAG
84278479 GAAAAA
1 GAAAAA
84278485 ATATTTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.70, C:0.03, G:0.18, T:0.09
Consensus pattern (9 bp):
GAAAAATAG
Found at i:84283703 original size:40 final size:41
Alignment explanation
Indices: 84283568--84283753 Score: 261
Period size: 41 Copynumber: 4.6 Consensus size: 41
84283558 TACTCAAATG
*
84283568 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
*
84283609 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
* *
84283650 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCT-AGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGCGACT
* * *
84283690 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCT-AGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
* *
84283730 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
84283754 CTTGTGCGAG
Statistics
Matches: 133, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 1 0.01
40 62 0.47
41 69 0.52
42 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.24
Consensus pattern (41 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
Found at i:84283710 original size:81 final size:82
Alignment explanation
Indices: 84283570--84283723 Score: 249
Period size: 81 Copynumber: 1.9 Consensus size: 82
84283560 CTCAAATGAT
* * *
84283570 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCTT
1 ATCCGGACTAAGTCCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCAT
*
84283635 TTGTGCTAAGCGACTAC
66 TTATGCTAAGCGACTAC
84283652 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCT-AGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATCCGGACTAAG-TCCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
84283715 TTTATGCTA
65 TTTATGCTA
84283724 GTGACCATAT
Statistics
Matches: 67, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
81 39 0.58
82 27 0.40
83 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.25
Consensus pattern (82 bp):
ATCCGGACTAAGTCCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCAT
TTATGCTAAGCGACTAC
Found at i:84291707 original size:40 final size:41
Alignment explanation
Indices: 84291572--84291757 Score: 252
Period size: 41 Copynumber: 4.6 Consensus size: 41
84291562 TACTCGAATG
* *
84291572 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCAACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
*
84291613 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
* *
84291654 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCT-AGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGCGACT
* * *
84291694 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCT-AGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
* *
84291734 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
84291758 CTTGTGCGAG
Statistics
Matches: 132, Mismatches: 11, Indels: 5
0.89 0.07 0.03
Matches are distributed among these distances:
39 1 0.01
40 62 0.47
41 68 0.52
42 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.24
Consensus pattern (41 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
Found at i:84291727 original size:81 final size:82
Alignment explanation
Indices: 84291574--84291727 Score: 240
Period size: 81 Copynumber: 1.9 Consensus size: 82
84291564 CTCGAATGAT
* * *
84291574 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCAACTATATCCGGGCTAAGTCCCGAAGGCTT
1 ATCCGGACTAAGTCCCGAAGGCATTTGTGCTAAGCAACTATATCCGGGCTAAGTCCCGAAGGCAT
*
84291639 TTGTGCTAAGCGACTAC
66 TTATGCTAAGCGACTAC
*
84291656 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCT-AGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATCCGGACTAAG-TCCCGAAGGCATTTGTGCTAAGCAACTATATCCGGGCTAAGTCCCGAAGGCA
84291719 TTTATGCTA
65 TTTATGCTA
84291728 GTGACCATAT
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 38 0.58
82 27 0.41
83 1 0.02
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (82 bp):
ATCCGGACTAAGTCCCGAAGGCATTTGTGCTAAGCAACTATATCCGGGCTAAGTCCCGAAGGCAT
TTATGCTAAGCGACTAC
Found at i:84299271 original size:22 final size:22
Alignment explanation
Indices: 84299243--84299296 Score: 99
Period size: 22 Copynumber: 2.5 Consensus size: 22
84299233 TATCCCCACA
84299243 TGGTGTGTAGGGCTGGACGAAG
1 TGGTGTGTAGGGCTGGACGAAG
*
84299265 TGGTGTGTAGGGCTGGACGGAG
1 TGGTGTGTAGGGCTGGACGAAG
84299287 TGGTGTGTAG
1 TGGTGTGTAG
84299297 AGGATGGATG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.15, C:0.07, G:0.52, T:0.26
Consensus pattern (22 bp):
TGGTGTGTAGGGCTGGACGAAG
Found at i:84301453 original size:32 final size:32
Alignment explanation
Indices: 84301417--84301479 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
84301407 AAATTGAACT
**
84301417 ACTAGACTAACGCTCACACACGTGATGGGATA
1 ACTAGACTAAAACTCACACACGTGATGGGATA
* *
84301449 ACTAGGCTAAAACTCACACATGTGATGGGAT
1 ACTAGACTAAAACTCACACACGTGATGGGAT
84301480 TCAAAGACTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.21
Consensus pattern (32 bp):
ACTAGACTAAAACTCACACACGTGATGGGATA
Found at i:84304838 original size:45 final size:45
Alignment explanation
Indices: 84304774--84304863 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
84304764 GATAACACCA
84304774 AAAGAAAGCCTCTCAATTCCATGAGAATAACTATAAAGATCATAC
1 AAAGAAAGCCTCTCAATTCCATGAGAATAACTATAAAGATCATAC
84304819 AAAGAAAGCCTCTCAATTCCATGAGAATAACTATAAAGATCATAC
1 AAAGAAAGCCTCTCAATTCCATGAGAATAACTATAAAGATCATAC
84304864 TCAAACCCTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.47, C:0.20, G:0.11, T:0.22
Consensus pattern (45 bp):
AAAGAAAGCCTCTCAATTCCATGAGAATAACTATAAAGATCATAC
Found at i:84304882 original size:45 final size:44
Alignment explanation
Indices: 84304786--84304882 Score: 124
Period size: 45 Copynumber: 2.2 Consensus size: 44
84304776 AGAAAGCCTC
* * *
84304786 TCAATTCCATGAGAATAACTATAAAGATCATACAAAGAAAGCCTC
1 TCAATTCCATGAGAATAACTATAAAGATCATAC-AACAAACCCTA
*
84304831 TCAATTCCATGAGAATAACTATAAAGATCATAC-TCAAACCCTTA
1 TCAATTCCATGAGAATAACTATAAAGATCATACAACAAACCC-TA
84304875 TCTAATTC
1 TC-AATTC
84304883 ATCTAAAACC
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
43 5 0.11
44 3 0.07
45 38 0.83
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.27
Consensus pattern (44 bp):
TCAATTCCATGAGAATAACTATAAAGATCATACAACAAACCCTA
Found at i:84305742 original size:23 final size:23
Alignment explanation
Indices: 84305715--84305761 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
84305705 GAAGGAAGGA
84305715 AGAAAGCGAGAGAATCAGAAAAG
1 AGAAAGCGAGAGAATCAGAAAAG
*
84305738 AGAAAGCGAGAGGATCAGAAAAG
1 AGAAAGCGAGAGAATCAGAAAAG
84305761 A
1 A
84305762 AGGGAAACTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.55, C:0.09, G:0.32, T:0.04
Consensus pattern (23 bp):
AGAAAGCGAGAGAATCAGAAAAG
Found at i:84306220 original size:20 final size:20
Alignment explanation
Indices: 84306195--84306234 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
84306185 CGAAAAATAA
*
84306195 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATAATTTACT
84306215 TTTCTGGAAAATAATTTACT
1 TTTCTGGAAAATAATTTACT
84306235 GAAAATATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.45
Consensus pattern (20 bp):
TTTCTGGAAAATAATTTACT
Found at i:84306354 original size:20 final size:20
Alignment explanation
Indices: 84306331--84306369 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
84306321 ATTTTTACAT
84306331 ATATTAATAAATTTATATAC
1 ATATTAATAAATTTATATAC
*
84306351 ATATTAATAAATTTTTATA
1 ATATTAATAAATTTATATA
84306370 GTTTAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (20 bp):
ATATTAATAAATTTATATAC
Found at i:84313038 original size:24 final size:24
Alignment explanation
Indices: 84313011--84313056 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
84313001 GGAAAATGCC
* *
84313011 TGCAAAAGAGAGAGAGAGAGAGGT
1 TGCAAAAGAAAGAGAGAAAGAGGT
**
84313035 TGCATGAGAAAGAGAGAAAGAG
1 TGCAAAAGAAAGAGAGAAAGAG
84313057 AAGGAGAAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.48, C:0.04, G:0.39, T:0.09
Consensus pattern (24 bp):
TGCAAAAGAAAGAGAGAAAGAGGT
Found at i:84314442 original size:44 final size:44
Alignment explanation
Indices: 84314379--84314467 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
84314369 ATTTTAACCC
84314379 TTATTCAATTATTTGTAGAAAGTTTGTTCTTCATTTCAACGCTT
1 TTATTCAATTATTTGTAGAAAGTTTGTTCTTCATTTCAACGCTT
84314423 TTATTCAATTATTTGTAGAAAGTTTGTTCTTCATTTCAACGCTT
1 TTATTCAATTATTTGTAGAAAGTTTGTTCTTCATTTCAACGCTT
84314467 T
1 T
84314468 CATAAAAGTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.25, C:0.13, G:0.11, T:0.51
Consensus pattern (44 bp):
TTATTCAATTATTTGTAGAAAGTTTGTTCTTCATTTCAACGCTT
Found at i:84315282 original size:15 final size:15
Alignment explanation
Indices: 84315262--84315329 Score: 59
Period size: 15 Copynumber: 4.4 Consensus size: 15
84315252 ATAATACAAA
84315262 ATATTTATTATTAAT
1 ATATTTATTATTAAT
*
84315277 ATATTTATAATTGTAAT
1 ATATTTATTA-T-TAAT
*
84315294 AAATATTTATTATTAAA
1 --ATATTTATTATTAAT
*
84315311 ATA-TTAATATTAA-
1 ATATTTATTATTAAT
84315324 ATATTT
1 ATATTT
84315330 TCAGTAATAT
Statistics
Matches: 44, Mismatches: 4, Indels: 11
0.75 0.07 0.19
Matches are distributed among these distances:
13 3 0.07
14 11 0.25
15 12 0.27
16 1 0.02
17 7 0.16
18 1 0.02
19 9 0.20
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (15 bp):
ATATTTATTATTAAT
Found at i:84315373 original size:15 final size:16
Alignment explanation
Indices: 84315353--84315383 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
84315343 AATAAAATTA
84315353 TTTAAAA-TTATTATT
1 TTTAAAATTTATTATT
84315368 TTTAAAATTTATTATT
1 TTTAAAATTTATTATT
84315384 AAAATAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTAAAATTTATTATT
Found at i:84315450 original size:21 final size:22
Alignment explanation
Indices: 84315396--84315437 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
84315386 AATAAAATTG
*
84315396 AAATATTAAA-TA-ATTTATTA
1 AAATAATAAATTATATTTATTA
84315416 AAATAATAAATTATATTTATTA
1 AAATAATAAATTATATTTATTA
84315438 TATAATAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 9 0.47
21 2 0.11
22 8 0.42
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
AAATAATAAATTATATTTATTA
Found at i:84318933 original size:16 final size:16
Alignment explanation
Indices: 84318891--84318960 Score: 97
Period size: 16 Copynumber: 4.4 Consensus size: 16
84318881 TTTGGTTCAT
84318891 TGTAATGGAATA-AGGC
1 TGTAATGGAATAGA-GC
* *
84318907 TGTCATTGAATAGAGC
1 TGTAATGGAATAGAGC
*
84318923 TATAATGGAATAGAGC
1 TGTAATGGAATAGAGC
84318939 TGTAATGGAATAGAGC
1 TGTAATGGAATAGAGC
84318955 TGTAAT
1 TGTAAT
84318961 CAGTAATTTA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
16 46 0.98
17 1 0.02
ACGTcount: A:0.37, C:0.07, G:0.27, T:0.29
Consensus pattern (16 bp):
TGTAATGGAATAGAGC
Found at i:84318998 original size:46 final size:44
Alignment explanation
Indices: 84318942--84319034 Score: 127
Period size: 44 Copynumber: 2.1 Consensus size: 44
84318932 ATAGAGCTGT
84318942 AATGGAATAGAGCTGTAATCAGTAATT-TAAT-TATTTGGTTGAATGG
1 AATGGAATAGAGCTGTAA-CAG-AATTCT--TGTATTTGGTTGAATGG
*
84318988 AATGGAATAGAGCTGTAACAGAATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAGCTGTAACAGAATTCTTGTATTTGGTTGAATGG
84319032 AAT
1 AAT
84319035 AGATGTTGTA
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
43 1 0.02
44 21 0.48
45 4 0.09
46 18 0.41
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.35
Consensus pattern (44 bp):
AATGGAATAGAGCTGTAACAGAATTCTTGTATTTGGTTGAATGG
Found at i:84319626 original size:24 final size:24
Alignment explanation
Indices: 84319598--84319645 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
84319588 ACAATGATGT
84319598 TGGTTGAGCTAACTATCCTTTTGG
1 TGGTTGAGCTAACTATCCTTTTGG
84319622 TGGTTGAGCTAACTATCCTTTTGG
1 TGGTTGAGCTAACTATCCTTTTGG
84319646 AGGAATCATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.25, T:0.42
Consensus pattern (24 bp):
TGGTTGAGCTAACTATCCTTTTGG
Found at i:84322308 original size:30 final size:30
Alignment explanation
Indices: 84322274--84322336 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
84322264 ACTTAACAAG
*
84322274 CAAATGTCTCTAAAATAATAATAAAATTAA
1 CAAATGCCTCTAAAATAATAATAAAATTAA
* * *
84322304 CAAATGCCTTTAAAGTAATAATGAAATTAA
1 CAAATGCCTCTAAAATAATAATAAAATTAA
84322334 CAA
1 CAA
84322337 TAAAATAAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.54, C:0.11, G:0.06, T:0.29
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAATAAAATTAA
Found at i:84324447 original size:17 final size:17
Alignment explanation
Indices: 84324403--84324461 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
84324393 ATAAAACTCG
84324403 AAAG-AAAAAAAAAGAA
1 AAAGAAAAAAAAAAGAA
* **
84324419 ATAGGGATAAAAAAATGGAA
1 A-A-AGA-AAAAAAAAAGAA
84324439 AAAGAAAAAAAAAAGAA
1 AAAGAAAAAAAAAAGAA
84324456 AAAGAA
1 AAAGAA
84324462 TGATGGTATT
Statistics
Matches: 33, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
16 1 0.03
17 17 0.52
18 3 0.09
19 1 0.03
20 11 0.33
ACGTcount: A:0.78, C:0.00, G:0.17, T:0.05
Consensus pattern (17 bp):
AAAGAAAAAAAAAAGAA
Found at i:84330793 original size:18 final size:18
Alignment explanation
Indices: 84330772--84330807 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
84330762 GTTGATTGAC
*
84330772 CTTAATTCAATTATAATA
1 CTTAATTCAATTAAAATA
*
84330790 CTTAATTTAATTAAAATA
1 CTTAATTCAATTAAAATA
84330808 ATAATATCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.47, C:0.08, G:0.00, T:0.44
Consensus pattern (18 bp):
CTTAATTCAATTAAAATA
Found at i:84349756 original size:44 final size:41
Alignment explanation
Indices: 84349642--84349760 Score: 114
Period size: 42 Copynumber: 2.8 Consensus size: 41
84349632 GTAATTCAGT
* * *
84349642 ATCGATGCCTTTGTCCCAAACAGGGTCTTACACGAAATCAA
1 ATCGATGCCTGTGTCCCAGACACGGTCTTACACGAAATCAA
* ** *
84349683 ATACAATG-CTGATGTCTTAGACATGGTCTTACACGTAAATCTCAA
1 AT-CGATGCCTG-TGTCCCAGACACGGTCTTACACG-AAA--TCAA
*
84349728 ATCGAGGCCTGTGTCCCAGACACGGTCTTACAC
1 ATCGATGCCTGTGTCCCAGACACGGTCTTACAC
84349761 AATATCTCAG
Statistics
Matches: 61, Mismatches: 11, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
41 4 0.07
42 23 0.38
43 3 0.05
44 22 0.36
45 9 0.15
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (41 bp):
ATCGATGCCTGTGTCCCAGACACGGTCTTACACGAAATCAA
Found at i:84352521 original size:27 final size:27
Alignment explanation
Indices: 84352491--84352544 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
84352481 TCATACAACC
* *
84352491 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
* *
84352518 CATGTAACAATAATTTACCGTTCAATT
1 CATGTAACAATAATTTAACATTCAATT
84352545 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:84355038 original size:15 final size:15
Alignment explanation
Indices: 84355020--84355063 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
84355010 GAAGCCCAGA
*
84355020 ATAAAGAAATTCAAG
1 ATAAAGAAATCCAAG
*
84355035 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
*
84355050 ATAAGGAAATCCAA
1 ATAAAGAAATCCAA
84355064 ATTACAATAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.57, C:0.11, G:0.14, T:0.18
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:84355911 original size:6 final size:6
Alignment explanation
Indices: 84355900--84356028 Score: 258
Period size: 6 Copynumber: 21.5 Consensus size: 6
84355890 ACTCGACTCT
84355900 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
84355948 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
84355996 CATATA CATATA CATATA CATATA CATATA CAT
1 CATATA CATATA CATATA CATATA CATATA CAT
84356029 GTAACACAGT
Statistics
Matches: 123, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 123 1.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (6 bp):
CATATA
Found at i:84359133 original size:27 final size:27
Alignment explanation
Indices: 84359103--84359156 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
84359093 TCATACAACC
* *
84359103 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
*
84359130 CATGTAACAATAATTTACCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
84359157 TCACATGACA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.41, C:0.15, G:0.06, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:84361650 original size:50 final size:50
Alignment explanation
Indices: 84361579--84361676 Score: 151
Period size: 50 Copynumber: 2.0 Consensus size: 50
84361569 ATTCTAATCC
* * *
84361579 TTTTCATAATTTCATGGCATAGTTCATTGGAATACATACCTTTCCTTTCT
1 TTTTCATAACTTCATGACATAGTTCATTGGAACACATACCTTTCCTTTCT
* *
84361629 TTTTTATAACTTCATGACATAGTTCATTTGAACACATACCTTTCCTTT
1 TTTTCATAACTTCATGACATAGTTCATTGGAACACATACCTTTCCTTT
84361677 TTCATGTGTA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 43 1.00
ACGTcount: A:0.26, C:0.20, G:0.08, T:0.46
Consensus pattern (50 bp):
TTTTCATAACTTCATGACATAGTTCATTGGAACACATACCTTTCCTTTCT
Found at i:84375271 original size:43 final size:42
Alignment explanation
Indices: 84375223--84375366 Score: 153
Period size: 43 Copynumber: 3.4 Consensus size: 42
84375213 TATCCCAGGT
* * * *
84375223 ATGGTCTTGCATGTTATCACATATTGATGCCAATGTCCTAGAC
1 ATGGTCTTACATGTAATCATATA-TGATGCCAATGTCCCAGAC
* * * *
84375266 ATGGTCTTACATGAAATTATATGATAATGCCAATGTCCCAGAG
1 ATGGTCTTACATGTAATCATAT-ATGATGCCAATGTCCCAGAC
* * *
84375309 ATGGTCTTACATGTAATCATATACCGATACCAATGTCCCAAAC
1 ATGGTCTTACATGTAATCATATA-TGATGCCAATGTCCCAGAC
*
84375352 ATGATCTTACATGTA
1 ATGGTCTTACATGTA
84375367 GTCTCATCTC
Statistics
Matches: 83, Mismatches: 16, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
42 1 0.01
43 81 0.98
44 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (42 bp):
ATGGTCTTACATGTAATCATATATGATGCCAATGTCCCAGAC
Found at i:84375360 original size:86 final size:85
Alignment explanation
Indices: 84375206--84375364 Score: 203
Period size: 86 Copynumber: 1.9 Consensus size: 85
84375196 AGCTCATACA
* * ** * * * *
84375206 AATGCCATATCCCAGGTATGGTCTTGCATGTTATCACATATTGATGCCAATGTCCTAGACATGGT
1 AATGCCATATCCCAGGTATGGTCTTACATGTAATCACATACCGATACCAATGTCCCAAACATGAT
84375271 CTTACATGAAATTATATGAT
66 CTTACATGAAATTATATGAT
* *
84375291 AATGCCAATGTCCCAGAG-ATGGTCTTACATGTAATCATATACCGATACCAATGTCCCAAACATG
1 AATGCC-ATATCCCAG-GTATGGTCTTACATGTAATCACATACCGATACCAATGTCCCAAACATG
84375355 ATCTTACATG
64 ATCTTACATG
84375365 TAGTCTCATC
Statistics
Matches: 62, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
85 6 0.10
86 55 0.89
87 1 0.02
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.31
Consensus pattern (85 bp):
AATGCCATATCCCAGGTATGGTCTTACATGTAATCACATACCGATACCAATGTCCCAAACATGAT
CTTACATGAAATTATATGAT
Found at i:84377094 original size:52 final size:52
Alignment explanation
Indices: 84377030--84377135 Score: 194
Period size: 52 Copynumber: 2.0 Consensus size: 52
84377020 ATTTATCAAC
84377030 TTTTCATACATTTAACCACACATTTTCACAAATAAATCCATATTTTGCATTT
1 TTTTCATACATTTAACCACACATTTTCACAAATAAATCCATATTTTGCATTT
* *
84377082 TTTTCATGCATTTAACCACACATTTTCACAAATAAATCCCTATTTTGCATTT
1 TTTTCATACATTTAACCACACATTTTCACAAATAAATCCATATTTTGCATTT
84377134 TT
1 TT
84377136 ACTCAAAATC
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.32, C:0.22, G:0.03, T:0.43
Consensus pattern (52 bp):
TTTTCATACATTTAACCACACATTTTCACAAATAAATCCATATTTTGCATTT
Found at i:84378112 original size:48 final size:46
Alignment explanation
Indices: 84378012--84378129 Score: 139
Period size: 48 Copynumber: 2.5 Consensus size: 46
84378002 ATGTGACATG
**
84378012 GTGTCTTTCAACCATGGTCTTATT-TATTCTCGTCTTGATGCCACA
1 GTGTCTTTCAACCATGGTCTTATTCTATTCTCGTCGAGATGCCACA
* * * * *
84378057 GTGTCTTTCAATCATGGTCTTATTCATTTTTTCCGTCGAGTTGCCATA
1 GTGTCTTTCAACCATGGTCTTATTC-TATTCT-CGTCGAGATGCCACA
*
84378105 GTGTCTTTCAACCATAGTCTTATTC
1 GTGTCTTTCAACCATGGTCTTATTC
84378130 CTTTGATTCG
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
45 23 0.38
47 4 0.07
48 34 0.56
ACGTcount: A:0.18, C:0.23, G:0.15, T:0.44
Consensus pattern (46 bp):
GTGTCTTTCAACCATGGTCTTATTCTATTCTCGTCGAGATGCCACA
Found at i:84378170 original size:45 final size:45
Alignment explanation
Indices: 84378098--84378308 Score: 160
Period size: 45 Copynumber: 4.7 Consensus size: 45
84378088 TCCGTCGAGT
* * * * ** * *
84378098 TGCCATAGTGTCTTTCAACCATAGTCTTATTCCTTTGATTCGTGA
1 TGCCATAGTGTCTTTCAGCTATGGTCTTACTCAATAGAATCGTGA
*
84378143 TGCCATAGCGTCTTTCAGCTATGGTCTTACTCAATAGAATCGTGA
1 TGCCATAGTGTCTTTCAGCTATGGTCTTACTCAATAGAATCGTGA
* * * *
84378188 TGCCATAATGTCTTTTAG-TCATGGTCTTACTCGATAGAATAGTGA
1 TGCCATAGTGTCTTTCAGCT-ATGGTCTTACTCAATAGAATCGTGA
* *** * * *
84378233 TACCATAACATCTTTCAG-TCATGGTCTTACTCTATA-AATAGTAA
1 TGCCATAGTGTCTTTCAGCT-ATGGTCTTACTCAATAGAATCGTGA
** *
84378277 TGCCATAACGTCTTTTAG-TCATGGTCTTACTC
1 TGCCATAGTGTCTTTCAGCT-ATGGTCTTACTC
84378309 GTTTCTAGTA
Statistics
Matches: 142, Mismatches: 23, Indels: 3
0.85 0.14 0.02
Matches are distributed among these distances:
44 37 0.26
45 105 0.74
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (45 bp):
TGCCATAGTGTCTTTCAGCTATGGTCTTACTCAATAGAATCGTGA
Found at i:84378291 original size:44 final size:45
Alignment explanation
Indices: 84378139--84378308 Score: 227
Period size: 45 Copynumber: 3.8 Consensus size: 45
84378129 CCTTTGATTC
* *
84378139 GTGATGCCATAGCGTCTTTCAG-CTATGGTCTTACTCAATAGAATC
1 GTGATGCCATAACGTCTTTCAGTC-ATGGTCTTACTCAATAGAATA
* * *
84378184 GTGATGCCATAATGTCTTTTAGTCATGGTCTTACTCGATAGAATA
1 GTGATGCCATAACGTCTTTCAGTCATGGTCTTACTCAATAGAATA
* * *
84378229 GTGATACCATAACATCTTTCAGTCATGGTCTTACTCTATA-AATA
1 GTGATGCCATAACGTCTTTCAGTCATGGTCTTACTCAATAGAATA
* *
84378273 GTAATGCCATAACGTCTTTTAGTCATGGTCTTACTC
1 GTGATGCCATAACGTCTTTCAGTCATGGTCTTACTC
84378309 GTTTCTAGTA
Statistics
Matches: 110, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
44 36 0.33
45 73 0.66
46 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.36
Consensus pattern (45 bp):
GTGATGCCATAACGTCTTTCAGTCATGGTCTTACTCAATAGAATA
Found at i:84378338 original size:89 final size:90
Alignment explanation
Indices: 84378139--84378309 Score: 256
Period size: 89 Copynumber: 1.9 Consensus size: 90
84378129 CCTTTGATTC
* * * * * *
84378139 GTGATGCCATAGCGTCTTTCAGCTATGGTCTTACTCAATAGAATCGTGATGCCATAATGTCTTTT
1 GTGATACCATAACATCTTTCAGCTATGGTCTTACTCAATAGAATAGTAATGCCATAACGTCTTTT
84378204 AGTCATGGTCTTACTCGATAGAATA
66 AGTCATGGTCTTACTCGATAGAATA
*
84378229 GTGATACCATAACATCTTTCAG-TCATGGTCTTACTCTATA-AATAGTAATGCCATAACGTCTTT
1 GTGATACCATAACATCTTTCAGCT-ATGGTCTTACTCAATAGAATAGTAATGCCATAACGTCTTT
84378292 TAGTCATGGTCTTACTCG
65 TAGTCATGGTCTTACTCG
84378310 TTTCTAGTAT
Statistics
Matches: 73, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
89 39 0.53
90 34 0.47
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (90 bp):
GTGATACCATAACATCTTTCAGCTATGGTCTTACTCAATAGAATAGTAATGCCATAACGTCTTTT
AGTCATGGTCTTACTCGATAGAATA
Found at i:84378554 original size:18 final size:18
Alignment explanation
Indices: 84378531--84378565 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
84378521 CTCGATCTTG
84378531 ATCTAACTTAATAATTTC
1 ATCTAACTTAATAATTTC
* *
84378549 ATCTAATTTATTAATTT
1 ATCTAACTTAATAATTT
84378566 ACATAGTAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.51
Consensus pattern (18 bp):
ATCTAACTTAATAATTTC
Found at i:84380005 original size:14 final size:14
Alignment explanation
Indices: 84379986--84380012 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
84379976 CCTAGAAATC
84379986 CTTTCTTTTAAAAA
1 CTTTCTTTTAAAAA
84380000 CTTTCTTTTAAAA
1 CTTTCTTTTAAAA
84380013 GGAACTCGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.15, G:0.00, T:0.52
Consensus pattern (14 bp):
CTTTCTTTTAAAAA
Done.