Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 258 of 349
Found at i:85906245 original size:47 final size:44
Alignment explanation
Indices: 85906122--85906433 Score: 207
Period size: 47 Copynumber: 6.8 Consensus size: 44
85906112 ATATACGTGT
* * *
85906122 GCTGATGCATGTCCCAGACATGTCTTACACTAGCACAACTCT-TA
1 GCTGATGCATGTCCCAGACATGTCTTACACTGGC-TATCTCTGTA
* * * * *
85906166 GCCGACGCGTGTCCCAGACACGTCTTATACTGGCTATCTCTGTCGA
1 GCTGATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTGT--A
*
85906212 GGCTGATGCATGTCCCTGACATGTCTTACACTGGCACTCATCTCTGTA
1 -GCTGATGCATGTCCCAGACATGTCTTACACTGG--CT-ATCTCTGTA
* * * *
85906260 -CCGTTGCCATGCCCCAGACATGGTCTTACACTGGCTATCAT-AGTA
1 GCTGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATC-TCTGTA
* * * * *
85906305 TGGCTGATGCATGTCCCAGACATGTCTTACACTAGCCATTGTTTGGA
1 --GCTGATGCATGTCCCAGACATGTCTTACACTGGCTA-TCTCTGTA
** * * *
85906352 TGCCAATGCCATGTCCCAGACATAGTCTTACACTGGCTCTCATAATGTG
1 -GCTGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATC-T-CTGTA
* * *
85906401 GCCGAAGCATGTCCTAGACATGTCTTACACTGG
1 GCTGATGCATGTCCCAGACATGTCTTACACTGG
85906434 AGCATAAATC
Statistics
Matches: 209, Mismatches: 40, Indels: 36
0.73 0.14 0.13
Matches are distributed among these distances:
43 5 0.02
44 29 0.14
45 6 0.03
46 39 0.19
47 83 0.40
48 35 0.17
49 4 0.02
50 8 0.04
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (44 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTGTA
Found at i:85906318 original size:94 final size:93
Alignment explanation
Indices: 85906122--85906431 Score: 303
Period size: 94 Copynumber: 3.3 Consensus size: 93
85906112 ATATACGTGT
* * *
85906122 GCTGATGCATGTCCCAGACATGTCTTACACTAGCA-CAACTCT-TAGCCGACG-CGTGTCCCAGA
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCACCATCTCTGTA-CCGATGCCATGTCCCAGA
* * *
85906184 CA-CGTCTTATACTGGCTATC-TCTGTCGA-G
65 CATAGTCTTACACTGGCTATCAT-AGT--ATG
* * * *
85906213 GCTGATGCATGTCCCTGACATGTCTTACACTGGCACTCATCTCTGTACCGTTGCCATGCCCCAGA
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCAC-CATCTCTGTACCGATGCCATGTCCCAGA
*
85906278 CATGGTCTTACACTGGCTATCATAGTATG
65 CATAGTCTTACACTGGCTATCATAGTATG
* * * *
85906307 GCTGATGCATGTCCCAGACATGTCTTACACTAG--CCATTGTTTGGATGCCAATGCCATGTCCCA
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCACCA-TCTCT-G-TACCGATGCCATGTCCCA
* * *
85906370 GACATAGTCTTACACTGGCTCTCATAATGTG
63 GACATAGTCTTACACTGGCTATCATAGTATG
* * *
85906401 GCCGAAGCATGTCCTAGACATGTCTTACACT
1 GCTGATGCATGTCCCAGACATGTCTTACACT
85906432 GGAGCATAAA
Statistics
Matches: 184, Mismatches: 25, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
91 35 0.19
92 4 0.02
93 12 0.07
94 114 0.62
95 18 0.10
96 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.28
Consensus pattern (93 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCACCATCTCTGTACCGATGCCATGTCCCAGAC
ATAGTCTTACACTGGCTATCATAGTATG
Found at i:85915120 original size:49 final size:47
Alignment explanation
Indices: 85914802--85915400 Score: 982
Period size: 47 Copynumber: 12.6 Consensus size: 47
85914792 CCCTTCGGGA
* * * * * * *
85914802 CTTATCACATTTATACGCTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
85914849 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
85914896 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
85914943 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
85914990 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
85915037 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
85915084 CTTATCAGATATATATACACTTTCACATTCACCACATTGGCCATTCGGC
1 CTTATC--ACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
85915133 CTTATCACATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
85915180 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
85915229 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
85915278 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
85915325 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
85915374 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
85915401 TATTCAAATA
Statistics
Matches: 521, Mismatches: 25, Indels: 12
0.93 0.04 0.02
Matches are distributed among these distances:
47 337 0.65
49 184 0.35
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:85915135 original size:96 final size:94
Alignment explanation
Indices: 85914802--85915400 Score: 982
Period size: 96 Copynumber: 6.3 Consensus size: 94
85914792 CCCTTCGGGA
* * * * * * * * *
85914802 CTTATCACATTTATACGCTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
85914867 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
85914896 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
85914961 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
85914990 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
85915055 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * * * *
85915084 CTTATCAGATATATATACACTTTCACATTCACCACATTGGCCATTCGGCCTTATCACATATGTAC
1 CTTATC--ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
85915149 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
85915180 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
*
85915245 ACACTTTCACATTCATCACATCGGCCATTCGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
85915278 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
85915343 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
85915374 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
85915401 TATTCAAATA
Statistics
Matches: 476, Mismatches: 23, Indels: 10
0.94 0.05 0.02
Matches are distributed among these distances:
94 185 0.39
96 246 0.52
98 45 0.09
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:85917549 original size:85 final size:85
Alignment explanation
Indices: 85917420--85917598 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
85917410 TATTTTATTG
*
85917420 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
85917485 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
85917505 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
85917570 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
85917590 CCCATGCTC
1 CCCATGCTC
85917599 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:85919347 original size:40 final size:40
Alignment explanation
Indices: 85919315--85919744 Score: 702
Period size: 40 Copynumber: 10.8 Consensus size: 40
85919305 CCAGCATGAT
* * * * *
85919315 TGCTCTTCGAGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* ** *
85919355 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
85919395 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
85919435 TGCTCCTC-GGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
85919474 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
85919514 TGCTCCTC-GGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
85919553 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
85919593 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
85919633 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
85919673 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
85919713 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCCTCGGGACTTAGCCCGGATATATCACT
85919745 CTCAATTCTC
Statistics
Matches: 364, Mismatches: 24, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
39 75 0.21
40 289 0.79
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:85919566 original size:119 final size:120
Alignment explanation
Indices: 85919315--85919744 Score: 738
Period size: 119 Copynumber: 3.6 Consensus size: 120
85919305 CCAGCATGAT
* * * * * *** *
85919315 TGCTCTTCGAGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
*
85919380 TATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
66 CATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
85919435 TGCTCCTC-GGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
85919499 CATCACTAGCACGAATGCTCCTC-GGACTTAGCCCGGATATATCACTAGCACGAA
66 CATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
85919553 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
85919618 CATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
66 CATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
85919673 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
*
85919738 TATCACT
66 CATCACT
85919745 CTCAATTCTC
Statistics
Matches: 296, Mismatches: 12, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
118 39 0.13
119 149 0.50
120 108 0.36
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.23
Consensus pattern (120 bp):
TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA
CATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:85921251 original size:47 final size:47
Alignment explanation
Indices: 85921173--85921674 Score: 826
Period size: 47 Copynumber: 10.6 Consensus size: 47
85921163 CCCTTCGGGA
* * * * * *
85921173 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
85921220 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
85921267 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
85921314 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
85921361 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
85921408 CTTATCACATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
85921455 CTTA-CACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
85921503 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
85921552 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
85921599 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
85921648 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
85921675 TATTCAAATA
Statistics
Matches: 430, Mismatches: 20, Indels: 10
0.93 0.04 0.02
Matches are distributed among these distances:
46 3 0.01
47 288 0.67
48 42 0.10
49 97 0.23
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:85932000 original size:40 final size:40
Alignment explanation
Indices: 85931905--85932090 Score: 268
Period size: 40 Copynumber: 4.7 Consensus size: 40
85931895 NNNNNNATAC
85931905 TAAATCCGGGTTAAGTCCCGAAGGCA-TCTGTGCGAGTTGTT
1 TAAATCCGGGTTAAGTCCCGAAGGCATTC-GTGCGAGTTG-T
85931946 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGT
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGT
* *
85931986 TAAATCCGGGTTAAGTTCCGAAGGCATTCGTGCGAATTGT
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGT
* * **
85932026 TAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTAC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGT
* *
85932065 TAAATCCGGGCTATGTCCCGAAGGCA
1 TAAATCCGGGTTAAGTCCCGAAGGCA
85932091 CTTGAACGCA
Statistics
Matches: 135, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
39 32 0.24
40 65 0.48
41 36 0.27
42 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGT
Found at i:85932112 original size:79 final size:80
Alignment explanation
Indices: 85931902--85932127 Score: 192
Period size: 79 Copynumber: 2.8 Consensus size: 80
85931892 NNNNNNNNNA
* ** **
85931902 TACTAAATCCGGGTTAAGTCCCGAAGGCA-TCTGTGCG-AGTTGTTTAAATCCGGGTTAAGTCCC
1 TACTAAATCCGGGCTAAGTCCCGAAGGCATTC-GAACGAAG--GGCTAAATCCGGGTTAAGTCCC
85931965 GAAGGCATTCGTGCGAGT
63 GAAGGCATTCGTGCGAGT
** * * ** ** * *
85931983 TGTTAAATCCGGGTTAAGTTCCGAAGGCATTCGTGCGAATTGTTAAATCCGGGTTATGTCCCGAA
1 TACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAAGGGCTAAATCCGGGTTAAGTCCCGAA
*
85932048 GGCATT-GTGTGAGT
66 GGCATTCGTGCGAGT
* * * * *
85932062 TACTAAATCCGGGCTATGTCCCGAAGGCACTT-GAACGCAGGGCTATATCC-GGTTAAATTCCGA
1 TACTAAATCCGGGCTAAGTCCCGAAGGCA-TTCGAACGAAGGGCTAAATCCGGGTTAAGTCCCGA
85932125 AGG
65 AGG
85932128 TACGTGATTT
Statistics
Matches: 119, Mismatches: 23, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
78 13 0.11
79 42 0.35
80 30 0.25
81 31 0.26
82 3 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (80 bp):
TACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAAGGGCTAAATCCGGGTTAAGTCCCGAA
GGCATTCGTGCGAGT
Found at i:85934093 original size:27 final size:27
Alignment explanation
Indices: 85934035--85934147 Score: 122
Period size: 27 Copynumber: 4.1 Consensus size: 27
85934025 AGGAAGCGTC
* * *
85934035 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCACATA-TATCTGTT
85934063 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGTT
* *
85934090 CTGGTGGCTTTGCCACGA-CTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATATATCTGT-T
* *
85934118 CTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGTT
85934144 CTGG
1 CTGG
85934148 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
26 5 0.07
27 37 0.50
28 32 0.43
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGTT
Found at i:85934120 original size:55 final size:54
Alignment explanation
Indices: 85934035--85934147 Score: 156
Period size: 55 Copynumber: 2.1 Consensus size: 54
85934025 AGGAAGCGTC
* *
85934035 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAAACTATCTGATCTGGTGACTCTGCCACAT-TATCTGTT
* * *
85934090 CTGGTGGCTTTGCCAC-GACTATCTGTATCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAAACTATCTG-ATCTGGTGACTCTGCCACATTATCTGTT
85934144 CTGG
1 CTGG
85934148 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
54 19 0.37
55 33 0.63
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAACTATCTGATCTGGTGACTCTGCCACATTATCTGTT
Found at i:85941593 original size:55 final size:54
Alignment explanation
Indices: 85941508--85941620 Score: 147
Period size: 55 Copynumber: 2.1 Consensus size: 54
85941498 AGGAAGCATC
* *
85941508 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACAT-TATCTGTT
* * * *
85941563 CTGGTGGCTCTGCCAC-GATTATCTGTATCTGGTGACTCTGTCACATTATTTGTT
1 CTGGTGGCTATGCCACAAATTATCTG-ATCTGGTGACTCTGCCACATTATCTGTT
85941617 CTGG
1 CTGG
85941621 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
54 19 0.37
55 32 0.63
ACGTcount: A:0.17, C:0.22, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
Found at i:85941602 original size:28 final size:26
Alignment explanation
Indices: 85941508--85941620 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
85941498 AGGAAGCATC
* *
85941508 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCAC--ATTATCTGTT
*
85941536 CTGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
85941563 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* * *
85941591 CTGGTGACTCTGTCACATTATTTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
85941617 CTGG
1 CTGG
85941621 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
26 7 0.09
27 37 0.49
28 32 0.42
ACGTcount: A:0.17, C:0.22, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:85943413 original size:78 final size:78
Alignment explanation
Indices: 85943284--85943438 Score: 267
Period size: 78 Copynumber: 2.0 Consensus size: 78
85943274 CTTTTCACAT
*
85943284 TATTTAATGACATTTCAACAATTTTTTTATGTCATTTACACATAATTTTGGTAAATTTTTACCTT
1 TATTTAATGACATTTCAACAATTTTTTTATGTCATTGACACATAATTTTGGTAAATTTTTACCTT
85943349 GAACCCTAAACCC
66 GAACCCTAAACCC
* *
85943362 TATTTAATGATATTTCAACAATTTTTCTT-TGTCATTGACGCATAATTTTGGTAAATTTTTACCT
1 TATTTAATGACATTTCAACAATTTTT-TTATGTCATTGACACATAATTTTGGTAAATTTTTACCT
85943426 TGAACCCTAAACC
65 TGAACCCTAAACC
85943439 TAAAACCTAA
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
78 71 0.97
79 2 0.03
ACGTcount: A:0.31, C:0.17, G:0.08, T:0.44
Consensus pattern (78 bp):
TATTTAATGACATTTCAACAATTTTTTTATGTCATTGACACATAATTTTGGTAAATTTTTACCTT
GAACCCTAAACCC
Found at i:85943521 original size:20 final size:21
Alignment explanation
Indices: 85943487--85943532 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
85943477 ACCCATGACT
* *
85943487 CCAAACCCTTTAACCTTAAAC
1 CCAAACCCTTGAACCCTAAAC
85943508 CCAAA-CCTTGAACCCTAAAC
1 CCAAACCCTTGAACCCTAAAC
85943528 CCAAA
1 CCAAA
85943533 ACCTAAACTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 18 0.78
21 5 0.22
ACGTcount: A:0.41, C:0.39, G:0.02, T:0.17
Consensus pattern (21 bp):
CCAAACCCTTGAACCCTAAAC
Found at i:85946542 original size:35 final size:35
Alignment explanation
Indices: 85946497--85946613 Score: 144
Period size: 35 Copynumber: 3.3 Consensus size: 35
85946487 TACACTTTGT
*
85946497 TTGGAGTGTTTCAGTTGGACTAACTCTTATGAGCA
1 TTGGTGTGTTTCAGTTGGACTAACTCTTATGAGCA
* * *
85946532 CTGGTGTGTTTTAGTTGGACTAACTCTTATGAGTA
1 TTGGTGTGTTTCAGTTGGACTAACTCTTATGAGCA
* * * * *
85946567 TTGGCGTGTTTCGGTTGGACTAGCTTTTGTGAGCA
1 TTGGTGTGTTTCAGTTGGACTAACTCTTATGAGCA
85946602 TTCGGTGTGTTT
1 TT-GGTGTGTTT
85946614 TAGAAGGATT
Statistics
Matches: 68, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
35 60 0.88
36 8 0.12
ACGTcount: A:0.16, C:0.13, G:0.29, T:0.42
Consensus pattern (35 bp):
TTGGTGTGTTTCAGTTGGACTAACTCTTATGAGCA
Found at i:85947238 original size:35 final size:35
Alignment explanation
Indices: 85947199--85947268 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
85947189 TGTGATGAAT
85947199 TGATTATGGTGTAGCTAAGATATGGTATGTTTGAG
1 TGATTATGGTGTAGCTAAGATATGGTATGTTTGAG
85947234 TGATTATGGTGTAGCTAAGATATGGTATGTTTGAG
1 TGATTATGGTGTAGCTAAGATATGGTATGTTTGAG
85947269 ATGGTATTGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.26, C:0.03, G:0.31, T:0.40
Consensus pattern (35 bp):
TGATTATGGTGTAGCTAAGATATGGTATGTTTGAG
Found at i:85951592 original size:24 final size:23
Alignment explanation
Indices: 85951559--85951624 Score: 62
Period size: 24 Copynumber: 2.7 Consensus size: 23
85951549 CGAGGCAAGC
*
85951559 AAAAAGGAAAAAGAAAAGAAGAGT
1 AAAAAAGAAAAAGAAAAGAAG-GT
*
85951583 AAAAAAG-AAAAGAAAAAGATGGT
1 AAAAAAGAAAAAG-AAAAGAAGGT
*
85951606 ATGAAAAGAAGAAAGAAAA
1 A-AAAAAGAA-AAAGAAAA
85951625 AGAAAAAAGC
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
23 8 0.23
24 18 0.51
25 5 0.14
26 4 0.11
ACGTcount: A:0.71, C:0.00, G:0.23, T:0.06
Consensus pattern (23 bp):
AAAAAAGAAAAAGAAAAGAAGGT
Found at i:85952260 original size:24 final size:23
Alignment explanation
Indices: 85952232--85952277 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
85952222 GAATAAAGAA
* *
85952232 TTAAATTTGGTTCAAGTTATTTAG
1 TTAAAATTAGTTCAAG-TATTTAG
*
85952256 TTAAAATTAGTTTAAGTATTTA
1 TTAAAATTAGTTCAAGTATTTA
85952278 ATTATGTCAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.35, C:0.02, G:0.13, T:0.50
Consensus pattern (23 bp):
TTAAAATTAGTTCAAGTATTTAG
Found at i:85952352 original size:38 final size:39
Alignment explanation
Indices: 85952268--85952365 Score: 121
Period size: 38 Copynumber: 2.5 Consensus size: 39
85952258 AAAATTAGTT
* *
85952268 TAAGTATTTAATTATGTCATAATTTGAACATTATTTATA
1 TAAGTTTTTAATTATGTCATAATCTGAACATTATTTATA
* *
85952307 TTAG-TTTTAATTATGTCATAATCTGAACA-TCTTTA-A
1 TAAGTTTTTAATTATGTCATAATCTGAACATTATTTATA
85952343 TAAGGGTTTTTAATTATGTCATA
1 TAA--GTTTTTAATTATGTCATA
85952366 GTTTAGGACA
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
36 3 0.06
37 5 0.10
38 24 0.47
39 19 0.37
ACGTcount: A:0.35, C:0.07, G:0.10, T:0.48
Consensus pattern (39 bp):
TAAGTTTTTAATTATGTCATAATCTGAACATTATTTATA
Found at i:85952392 original size:40 final size:39
Alignment explanation
Indices: 85952311--85952432 Score: 115
Period size: 39 Copynumber: 3.1 Consensus size: 39
85952301 TTTATATTAG
* * * *
85952311 TTTTAATTATGTCATAATCT-GAACATCTTTAATAAGGGT
1 TTTTAATTATGTCATAGTTTAGGACATCTTTAATAA-TGT
*
85952350 TTTTAATTATGTCATAGTTTAGGACATCTTAAATATATG-
1 TTTTAATTATGTCATAGTTTAGGACATCTTTAATA-ATGT
* * *
85952389 TTTTAAATATGTCCTAGTTTA-GACGTCTTTAATACATGT
1 TTTTAATTATGTCATAGTTTAGGACATCTTTAATA-ATGT
*
85952428 CTTTA
1 TTTTA
85952433 GTTCAGACCA
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
38 14 0.20
39 41 0.59
40 13 0.19
41 1 0.01
ACGTcount: A:0.31, C:0.11, G:0.12, T:0.46
Consensus pattern (39 bp):
TTTTAATTATGTCATAGTTTAGGACATCTTTAATAATGT
Found at i:85952393 original size:39 final size:38
Alignment explanation
Indices: 85952274--85952432 Score: 119
Period size: 38 Copynumber: 4.1 Consensus size: 38
85952264 AGTTTAAGTA
* * * *
85952274 TTTAATTATGTCATAATTT-GAACAT-TATTTATATTAGT
1 TTTAATTATGTCATAGTTTAGGACATCT-TTAATAAT-GT
* * * *
85952312 TTTAATTATGTCATAATCT-GAACATCTTTAATAAGGGTT
1 TTTAATTATGTCATAGTTTAGGACATCTTTAATAA-TG-T
*
85952351 TTTAATTATGTCATAGTTTAGGACATCTTAAATATATGT
1 TTTAATTATGTCATAGTTTAGGACATCTTTAATA-ATGT
* * *
85952390 TTTAAATATGTCCTAGTTTA-GACGTCTTTAATACATGT
1 TTTAATTATGTCATAGTTTAGGACATCTTTAATA-ATGT
85952428 CTTTA
1 -TTTA
85952433 GTTCAGACCA
Statistics
Matches: 101, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
38 45 0.45
39 42 0.42
40 13 0.13
41 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.11, T:0.47
Consensus pattern (38 bp):
TTTAATTATGTCATAGTTTAGGACATCTTTAATAATGT
Found at i:85956887 original size:25 final size:25
Alignment explanation
Indices: 85956859--85956918 Score: 68
Period size: 28 Copynumber: 2.3 Consensus size: 25
85956849 AGATAACGTG
85956859 ATTAGTTA-AAAAAAGGTTAAATTCT
1 ATTA-TTACAAAAAAGGTTAAATTCT
*
85956884 ATTATTAGTCCCAAAAAGGTTAAATTCT
1 ATTATTA---CAAAAAAGGTTAAATTCT
85956912 ATTATTA
1 ATTATTA
85956919 GTCCATGTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
24 3 0.10
25 4 0.13
28 23 0.77
ACGTcount: A:0.43, C:0.08, G:0.10, T:0.38
Consensus pattern (25 bp):
ATTATTACAAAAAAGGTTAAATTCT
Found at i:85956899 original size:28 final size:28
Alignment explanation
Indices: 85956868--85956922 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
85956858 GATTAGTTAA
85956868 AAAAAGGTTAAATTCTATTATTAGTCCC
1 AAAAAGGTTAAATTCTATTATTAGTCCC
85956896 AAAAAGGTTAAATTCTATTATTAGTCC
1 AAAAAGGTTAAATTCTATTATTAGTCC
85956923 ATGTAATTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.40, C:0.13, G:0.11, T:0.36
Consensus pattern (28 bp):
AAAAAGGTTAAATTCTATTATTAGTCCC
Found at i:85958108 original size:10 final size:10
Alignment explanation
Indices: 85958088--85958130 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
85958078 ACCTTTGATT
*
85958088 TTATTAAAAA
1 TTATAAAAAA
*
85958098 TTAAAAAAAA
1 TTATAAAAAA
85958108 TTTATAAAAAA
1 -TTATAAAAAA
*
85958119 CTATAAAAAA
1 TTATAAAAAA
85958129 TT
1 TT
85958131 CAAATCAATA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
10 18 0.67
11 9 0.33
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (10 bp):
TTATAAAAAA
Found at i:85958117 original size:21 final size:21
Alignment explanation
Indices: 85958087--85958130 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
85958077 AACCTTTGAT
* *
85958087 TTTATTAAAAATTAAAAAAAA
1 TTTATAAAAAACTAAAAAAAA
*
85958108 TTTATAAAAAACTATAAAAAA
1 TTTATAAAAAACTAAAAAAAA
85958129 TT
1 TT
85958131 CAAATCAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (21 bp):
TTTATAAAAAACTAAAAAAAA
Found at i:85958220 original size:18 final size:17
Alignment explanation
Indices: 85958197--85958253 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 17
85958187 AAATTCATTA
85958197 AAAAATAGTAAAACATAT
1 AAAAATAGTAAAA-ATAT
*
85958215 AAAAATTGTAAAAATTAT
1 AAAAATAGTAAAAA-TAT
*
85958233 AAAATATA-TAGAAATAT
1 AAAA-ATAGTAAAAATAT
85958250 AAAA
1 AAAA
85958254 TTTTATAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
17 8 0.24
18 24 0.71
19 2 0.06
ACGTcount: A:0.67, C:0.02, G:0.05, T:0.26
Consensus pattern (17 bp):
AAAAATAGTAAAAATAT
Found at i:85958265 original size:10 final size:10
Alignment explanation
Indices: 85958247--85958272 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
85958237 TATATAGAAA
85958247 TATAAAATTT
1 TATAAAATTT
85958257 TATAAAATTT
1 TATAAAATTT
85958267 TATAAA
1 TATAAA
85958273 GTCGTAAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (10 bp):
TATAAAATTT
Found at i:85958522 original size:36 final size:37
Alignment explanation
Indices: 85958471--85958550 Score: 101
Period size: 37 Copynumber: 2.2 Consensus size: 37
85958461 GTCATTAATT
* * *
85958471 TTTTTTATGATTTTTAT-AAAAATTTAC-AATTTTTTA
1 TTTTTTACGAATTTTATAAAAAATTT-CTAATTTTTAA
85958507 TTTTTTACGAATTTTATAAAAAATTTCTAATTTTTAA
1 TTTTTTACGAATTTTATAAAAAATTTCTAATTTTTAA
*
85958544 ATTTTTA
1 TTTTTTA
85958551 TTAAAATTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
36 16 0.42
37 22 0.58
ACGTcount: A:0.35, C:0.04, G:0.03, T:0.59
Consensus pattern (37 bp):
TTTTTTACGAATTTTATAAAAAATTTCTAATTTTTAA
Found at i:85958558 original size:20 final size:20
Alignment explanation
Indices: 85958535--85958590 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 20
85958525 AAAAATTTCT
85958535 AATTTTTAAATTTTTATTAA
1 AATTTTTAAATTTTTATTAA
*
85958555 AA-TTTTATAATTTTT-CTAA
1 AATTTTTA-AATTTTTATTAA
* *
85958574 AATTTTTTATTTTTTAT
1 AATTTTTAAATTTTTAT
85958591 CTTTTATCAT
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (20 bp):
AATTTTTAAATTTTTATTAA
Found at i:85963435 original size:14 final size:15
Alignment explanation
Indices: 85963419--85963470 Score: 58
Period size: 14 Copynumber: 3.6 Consensus size: 15
85963409 ATAAGGAAAA
85963419 TTTTGAAATTTAAAT
1 TTTTGAAATTTAAAT
85963434 TTTTGAAAATTT---T
1 TTTTG-AAATTTAAAT
85963447 GTTTTG-AATTTAAAT
1 -TTTTGAAATTTAAAT
85963462 TTTTGAAAT
1 TTTTGAAAT
85963471 AAAAAACTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 12
0.72 0.00 0.28
Matches are distributed among these distances:
12 5 0.16
13 1 0.03
14 10 0.32
15 9 0.29
16 6 0.19
ACGTcount: A:0.35, C:0.00, G:0.10, T:0.56
Consensus pattern (15 bp):
TTTTGAAATTTAAAT
Found at i:85963841 original size:37 final size:37
Alignment explanation
Indices: 85963799--85963966 Score: 187
Period size: 37 Copynumber: 4.8 Consensus size: 37
85963789 TTTTTACAGA
* * *
85963799 GAATCACTTATGTTCAGCTCCATCTTTTCTTTGTAGC
1 GAATCATTTATGTTCATCTCTATCTTTTCTTTGTAGC
85963836 GAATCATTTATGTTCATCTCTATCTTTTCTGTT-T--C
1 GAATCATTTATGTTCATCTCTATCTTTTCT-TTGTAGC
** * *
85963871 -AAGGA-ATA-G--C-TC-C-ATCTTTTCTTTGTAGT
1 GAATCATTTATGTTCATCTCTATCTTTTCTTTGTAGC
85963900 GAATCATTTATGTTCATCTCTATCTTTTCTTTGTAGC
1 GAATCATTTATGTTCATCTCTATCTTTTCTTTGTAGC
85963937 GAATCATTTATGTTCATCTCTATCTTTTCT
1 GAATCATTTATGTTCATCTCTATCTTTTCT
85963967 GTTTCAAGGA
Statistics
Matches: 108, Mismatches: 11, Indels: 24
0.76 0.08 0.17
Matches are distributed among these distances:
26 2 0.02
27 10 0.09
28 1 0.01
29 2 0.02
30 4 0.04
31 2 0.02
32 2 0.02
33 2 0.02
34 4 0.04
35 3 0.03
36 1 0.01
37 73 0.68
38 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.11, T:0.49
Consensus pattern (37 bp):
GAATCATTTATGTTCATCTCTATCTTTTCTTTGTAGC
Found at i:85967522 original size:21 final size:21
Alignment explanation
Indices: 85967496--85967535 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
85967486 TGCAATTGAA
85967496 GATTATATGTGAGTTAGATTC
1 GATTATATGTGAGTTAGATTC
85967517 GATTATATGTGAGTTAGAT
1 GATTATATGTGAGTTAGAT
85967536 AAGTATATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.03, G:0.25, T:0.42
Consensus pattern (21 bp):
GATTATATGTGAGTTAGATTC
Found at i:85975333 original size:26 final size:26
Alignment explanation
Indices: 85975297--85975349 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
85975287 CCTAATAAAG
85975297 TAGGAGGTCCTACTAGAAAATTTTCT
1 TAGGAGGTCCTACTAGAAAATTTTCT
85975323 TAGGAGGTCCTACTAGAAAATTTTCT
1 TAGGAGGTCCTACTAGAAAATTTTCT
85975349 T
1 T
85975350 TCAAGAATGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.36
Consensus pattern (26 bp):
TAGGAGGTCCTACTAGAAAATTTTCT
Found at i:85976987 original size:19 final size:19
Alignment explanation
Indices: 85976963--85977027 Score: 69
Period size: 19 Copynumber: 3.3 Consensus size: 19
85976953 TAGTGGGAGT
85976963 GTTTTGGGGGATTTGGGTA
1 GTTTTGGGGGATTTGGGTA
* * *
85976982 GTTTTGATGGGTAGTGGGAGT-
1 GTTTTG--GGGGATTTGG-GTA
85977003 GTTTTGGGGGATTTGGGTA
1 GTTTTGGGGGATTTGGGTA
85977022 GTTTTG
1 GTTTTG
85977028 ATAGTCTATC
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
18 2 0.06
19 19 0.53
21 13 0.36
22 2 0.06
ACGTcount: A:0.11, C:0.00, G:0.46, T:0.43
Consensus pattern (19 bp):
GTTTTGGGGGATTTGGGTA
Found at i:85976988 original size:40 final size:40
Alignment explanation
Indices: 85976951--85977029 Score: 158
Period size: 40 Copynumber: 2.0 Consensus size: 40
85976941 GAATTTGAGA
85976951 GGTAGTGGGAGTGTTTTGGGGGATTTGGGTAGTTTTGATG
1 GGTAGTGGGAGTGTTTTGGGGGATTTGGGTAGTTTTGATG
85976991 GGTAGTGGGAGTGTTTTGGGGGATTTGGGTAGTTTTGAT
1 GGTAGTGGGAGTGTTTTGGGGGATTTGGGTAGTTTTGAT
85977030 AGTCTATCTG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.13, C:0.00, G:0.47, T:0.41
Consensus pattern (40 bp):
GGTAGTGGGAGTGTTTTGGGGGATTTGGGTAGTTTTGATG
Found at i:85977007 original size:21 final size:19
Alignment explanation
Indices: 85976951--85977011 Score: 61
Period size: 19 Copynumber: 3.1 Consensus size: 19
85976941 GAATTTGAGA
85976951 GGTAGTGGGAGTGTTTTGG
1 GGTAGTGGGAGTGTTTTGG
* * *
85976970 GGGATTTGG-GTAGTTTTGATG
1 GGTAGTGGGAGT-GTTTTG--G
85976991 GGTAGTGGGAGTGTTTTGG
1 GGTAGTGGGAGTGTTTTGG
85977010 GG
1 GG
85977012 GATTTGGGTA
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
18 2 0.06
19 15 0.47
21 13 0.41
22 2 0.06
ACGTcount: A:0.11, C:0.00, G:0.51, T:0.38
Consensus pattern (19 bp):
GGTAGTGGGAGTGTTTTGG
Found at i:85987703 original size:12 final size:12
Alignment explanation
Indices: 85987688--85987732 Score: 63
Period size: 12 Copynumber: 3.7 Consensus size: 12
85987678 CCTTGATCCA
85987688 CTCCTCAAATCT
1 CTCCTCAAATCT
*
85987700 CTCCCCAAATCT
1 CTCCTCAAATCT
*
85987712 CTCCTCTAATCT
1 CTCCTCAAATCT
85987724 CTCCATCAA
1 CTCC-TCAA
85987733 CCAATTCGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
12 25 0.89
13 3 0.11
ACGTcount: A:0.24, C:0.44, G:0.00, T:0.31
Consensus pattern (12 bp):
CTCCTCAAATCT
Found at i:85994341 original size:96 final size:95
Alignment explanation
Indices: 85994235--85994629 Score: 605
Period size: 96 Copynumber: 4.1 Consensus size: 95
85994225 TACATGATAG
85994235 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCT
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCT
* *
85994299 AATGGCCGATGTGGTGAATGTGAAAGTGTATA
66 AATGGCCAATGTGATGAATGTGAAAGTG--TA
*
85994331 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCC
*
85994396 TAATGGCCGATGTGATGAATGTGAAAGTGTA
65 TAATGGCCAATGTGATGAATGTGAAAGTGTA
*
85994427 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCC
*
85994492 TAATGGCCAATGTGGTGAATGTGAAAGTGTA
65 TAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * *
85994523 TATATGTGATCAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-TATATATGTGATAGGGCCG
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCT
* * *
85994587 AGTGGCCAACGTGATGGATGTGAAAGTGTA
66 AATGGCCAATGTGATGAATGTGAAAGTGTA
*
85994617 TAAATGTGATAAG
1 TATATGTGATAAG
85994630 TCCCGAAGGG
Statistics
Matches: 281, Mismatches: 16, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
94 54 0.19
96 181 0.64
98 46 0.16
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (95 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCT
AATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:85994352 original size:49 final size:47
Alignment explanation
Indices: 85994235--85994629 Score: 601
Period size: 47 Copynumber: 8.3 Consensus size: 47
85994225 TACATGATAG
85994235 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
85994282 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
*
85994331 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
85994380 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
85994427 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
* *
85994476 TATATGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* * *
85994523 TATATGTGATCAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* * * * * *
85994570 TATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
85994617 TAAATGTGATAAG
1 TATATGTGATAAG
85994630 TCCCGAAGGG
Statistics
Matches: 330, Mismatches: 14, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
47 189 0.57
49 141 0.43
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:85996515 original size:40 final size:40
Alignment explanation
Indices: 85996032--85996503 Score: 800
Period size: 40 Copynumber: 11.8 Consensus size: 40
85996022 GAGAATTGAG
85996032 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
85996072 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
85996112 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
85996152 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
85996192 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
85996232 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
85996272 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
85996312 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
85996352 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
85996392 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * ** *
85996432 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
85996472 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
85996504 ATCATGCTGG
Statistics
Matches: 411, Mismatches: 21, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 411 1.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:86000496 original size:96 final size:96
Alignment explanation
Indices: 86000384--86000919 Score: 873
Period size: 96 Copynumber: 5.6 Consensus size: 96
86000374 TACATGATAG
* *
86000384 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGATAAGGACTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
86000449 ATGGCCGATGTGGTGAATGTGAAAGTGTATA
66 ATGGCCGATGTGGTGAATGTGAAAGTGTATA
* *
86000480 TATATTTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
*
86000545 ATGGCCGATGTGATGAATGTGAAAGTG--TA
66 ATGGCCGATGTGGTGAATGTGAAAGTGTATA
86000574 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
86000639 ATGGCCGATGTGGTGAATGTGAAAGTGTATA
66 ATGGCCGATGTGGTGAATGTGAAAGTGTATA
86000670 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
*
86000735 ATGGCCGATGTGGCGAATGTGAAAGTGTATA
66 ATGGCCGATGTGGTGAATGTGAAAGTGTATA
* * *
86000766 TATATGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTATATATGTGATAAGGCCGA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
* *
86000831 ATGGCCAATGTGATGAATGTGAAAGTG--TA
66 ATGGCCGATGTGGTGAATGTGAAAGTGTATA
* * * * * * * *
86000860 TATATGTGATAGGGCCGAGTGGGCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
86000920 TCCCGAAGGG
Statistics
Matches: 415, Mismatches: 23, Indels: 6
0.93 0.05 0.01
Matches are distributed among these distances:
94 145 0.35
96 270 0.65
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
ATGGCCGATGTGGTGAATGTGAAAGTGTATA
Found at i:86000672 original size:143 final size:142
Alignment explanation
Indices: 86000384--86000919 Score: 869
Period size: 143 Copynumber: 3.8 Consensus size: 142
86000374 TACATGATAG
* *
86000384 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGATAAGGACTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
* *
86000449 ATGGCCGATGTGGTGAATGTGAAAGTGTATATATATTTGATAAGGCCTAATGGCCGATGTGGTGA
66 ATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGGTGA
86000514 ATGTGAAAGTGTA
130 ATGTGAAAGTGTA
86000527 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
86000592 ATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGGTGAA
66 ATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGGTGAA
86000656 TGTGAAAGTGTATA
131 TGTGAAAGTG--TA
86000670 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
** *
86000735 ATGGCCGATGTGGCGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGGTGA
66 ATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGGTGA
86000800 ATGTGAAAGTGTA
130 ATGTGAAAGTGTA
* * * *
86000813 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
* * * * * *
86000878 GTGGGCAACGTGATGGATGTGAAAGTG-TATAAATGTGATAAG
66 ATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAG
86000920 TCCCGAAGGG
Statistics
Matches: 370, Mismatches: 19, Indels: 10
0.93 0.05 0.03
Matches are distributed among these distances:
141 60 0.16
143 264 0.71
145 46 0.12
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (142 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
ATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGGTGAA
TGTGAAAGTGTA
Found at i:86000931 original size:47 final size:47
Alignment explanation
Indices: 86000384--86000919 Score: 838
Period size: 47 Copynumber: 11.3 Consensus size: 47
86000374 TACATGATAG
86000384 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* * *
86000431 TATATATGATAAGGACTAATGGCCGATGTGGTGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
* *
86000480 TATATTTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
86000527 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
86000574 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
86000621 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
86000670 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
**
86000717 TATATGTGATAAGGCCTAATGGCCGATGTGGCGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
* *
86000766 TATATGTGATAAGGCCTAATGGCCAATGTGGTGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* *
86000813 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* * * * * * *
86000860 TATATGTGATAGGGCCGAGTGGGCAACGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
86000907 TAAATGTGATAAG
1 TATATGTGATAAG
86000920 TCCCGAAGGG
Statistics
Matches: 461, Mismatches: 22, Indels: 12
0.93 0.04 0.02
Matches are distributed among these distances:
47 325 0.70
49 136 0.30
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:86009700 original size:12 final size:13
Alignment explanation
Indices: 86009683--86009711 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
86009673 CTCTTTGAAG
86009683 TTTAGTTATCCA-
1 TTTAGTTATCCAC
86009695 TTTAGTTATCCAC
1 TTTAGTTATCCAC
86009708 TTTA
1 TTTA
86009712 AAAATTGAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.24, C:0.17, G:0.07, T:0.52
Consensus pattern (13 bp):
TTTAGTTATCCAC
Found at i:86010712 original size:27 final size:28
Alignment explanation
Indices: 86010674--86010726 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
86010664 AGAGTAAACA
*
86010674 CAATTTGGGCCTAAGCAC-TTTCAGTCT
1 CAATTAGGGCCTAAGCACATTTCAGTCT
* *
86010701 CAATTAGGGCCTTAGCCCATTTCAGT
1 CAATTAGGGCCTAAGCACATTTCAGT
86010727 AACAGTAGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (28 bp):
CAATTAGGGCCTAAGCACATTTCAGTCT
Found at i:86010755 original size:33 final size:31
Alignment explanation
Indices: 86010707--86010803 Score: 104
Period size: 33 Copynumber: 3.0 Consensus size: 31
86010697 GTCTCAATTA
* *
86010707 GGGCCTTAGCCCATTTCAGTAACAGTAGCAGTCT
1 GGGCCTAAG-CCATTTCAGTAACAGTA-CAGT-G
*
86010741 GGGCCTGAGCCATTTCAGTAACAGTATCAGTG
1 GGGCCTAAGCCATTTCAGTAACAGTA-CAGTG
* *
86010773 GGGCCTAAGCCTATTACAGTATCAGTACAGT
1 GGGCCTAAGCC-ATTTCAGTAACAGTACAGT
86010804 ATGCAATCAG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
32 14 0.25
33 34 0.61
34 8 0.14
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (31 bp):
GGGCCTAAGCCATTTCAGTAACAGTACAGTG
Found at i:86011149 original size:16 final size:16
Alignment explanation
Indices: 86011128--86011160 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
86011118 CACTTACCGG
86011128 CCCAACAGTAGCTCAA
1 CCCAACAGTAGCTCAA
86011144 CCCAACAGTAGCTCAA
1 CCCAACAGTAGCTCAA
86011160 C
1 C
86011161 AATCGTCTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.39, G:0.12, T:0.12
Consensus pattern (16 bp):
CCCAACAGTAGCTCAA
Found at i:86016344 original size:28 final size:28
Alignment explanation
Indices: 86016279--86016377 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
86016269 CATGAGATTG
* * *
86016279 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
86016308 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
86016336 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
86016364 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
86016378 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:86022532 original size:28 final size:29
Alignment explanation
Indices: 86022501--86022555 Score: 87
Period size: 29 Copynumber: 1.9 Consensus size: 29
86022491 CCGAAATTCT
86022501 GATAT-CATGGC-CTAAAGCCAAATCAGCG
1 GATATGCATGGCTC-AAAGCCAAATCAGCG
86022529 GATATGCATGGCTCAAAGCCAAATCAG
1 GATATGCATGGCTCAAAGCCAAATCAG
86022556 TTTATCTCGA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
28 5 0.20
29 19 0.76
30 1 0.04
ACGTcount: A:0.36, C:0.24, G:0.22, T:0.18
Consensus pattern (29 bp):
GATATGCATGGCTCAAAGCCAAATCAGCG
Found at i:86025488 original size:20 final size:20
Alignment explanation
Indices: 86025463--86025502 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
86025453 CCTCTATTGT
86025463 CATAAATTCAAGTATTTCTA
1 CATAAATTCAAGTATTTCTA
86025483 CATAAATTCAAGTATTTCTA
1 CATAAATTCAAGTATTTCTA
86025503 AGTCATAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.15, G:0.05, T:0.40
Consensus pattern (20 bp):
CATAAATTCAAGTATTTCTA
Found at i:86029999 original size:54 final size:55
Alignment explanation
Indices: 86029929--86030081 Score: 186
Period size: 54 Copynumber: 2.8 Consensus size: 55
86029919 GCATTGGAAC
*
86029929 TAAGATAAGGATATCATGTAAGACCATGCCAAAGCATGGCATTGATAAGTTA-TA
1 TAAGGTAAGGATATCATGTAAGACCATGCCAAAGCATGGCATTGATAAGTTACTA
* * *
86029983 TAAGGTAAGGAAATCATGTAAGACCATGTC-AAGACATGGCATTGATGAGTTACTA
1 TAAGGTAAGGATATCATGTAAGACCATGCCAAAG-CATGGCATTGATAAGTTACTA
* ** * *
86030038 TAAGGCAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGAATTG
1 TAAGG-TAAGGATATCATGTAAGACCATGCCAAAGCATGGCATTG
86030082 GTGACATCAT
Statistics
Matches: 84, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
53 3 0.04
54 44 0.52
55 31 0.37
56 6 0.07
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.24
Consensus pattern (55 bp):
TAAGGTAAGGATATCATGTAAGACCATGCCAAAGCATGGCATTGATAAGTTACTA
Found at i:86030064 original size:55 final size:55
Alignment explanation
Indices: 86029943--86030338 Score: 290
Period size: 55 Copynumber: 7.5 Consensus size: 55
86029933 ATAAGGATAT
* * * *
86029943 CATGTAAGACCATGCCAA-AGCATGGCATTGATAAGTTA-TATAAGG-TAAGGAAAT
1 CATGTAAGACCATGCCAAGA-CATGGCATTGATGAGTTACTATAAGGCAAAGG-TAC
* *
86029997 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTAC
* * * ** * * *
86030052 CATGTAAGACCATGCCAAGGCATGGAATTGGTGACAT-C-ATAAGACAATGATAC
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTAC
**** ** *
86030105 CATGTAAGACCATGTTTGGAACATGGCATT--TG-G-TAAGATAAGG---A--TAT
1 CATGTAAGACCATGCCAAG-ACATGGCATTGATGAGTTACTATAAGGCAAAGGTAC
* * * * *
86030152 CATGTAAGACCATGCCAAGACATGGAATAGATAAGTT-CTATAAGGC-AAGGAAAT
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGG-TAC
* * * * * *
86030206 CGTGCAAGACCATGTCAAGACATGGCATTGATGAGTTATTATAAGGAAAAGGTCC
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTAC
* *
86030261 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTT-C-ATAAGGC-AAGGATAC
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGG-TAC
* *
86030314 CACGTAAGACCATGTCAAGACATGG
1 CATGTAAGACCATGCCAAGACATGG
86030339 TAATGGTAAA
Statistics
Matches: 265, Mismatches: 59, Indels: 37
0.73 0.16 0.10
Matches are distributed among these distances:
46 8 0.03
47 17 0.06
48 1 0.00
49 7 0.03
50 2 0.01
51 1 0.00
52 11 0.04
53 56 0.21
54 76 0.29
55 78 0.29
56 8 0.03
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (55 bp):
CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTAC
Found at i:86030117 original size:53 final size:55
Alignment explanation
Indices: 86029929--86030338 Score: 163
Period size: 54 Copynumber: 7.7 Consensus size: 55
86029919 GCATTGGAAC
* * * * * **
86029929 TAAGATAAGGATATCATGTAAGACCATGCCAA-AGCATGGCATTGATAAGTTA-TA
1 TAAGACAAAGATACCATGTAAGACCATGCCAAGA-CATGGAATTGATGACATACTA
** * * * * * **
86029983 TAAGGTAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTA
1 TAAGACAAAGATACCATGTAAGACCATGCCAAGACATGGAATTGATGACATACTA
* * * * *
86030038 TAAGGCAAAGGTCCCATGTAAGACCATGCCAAGGCATGGAATTGGTGACAT-C-A
1 TAAGACAAAGATACCATGTAAGACCATGCCAAGACATGGAATTGATGACATACTA
* ** * * * *
86030091 TAAGACAATGATACCATGTAAGACCAT-----G-TTTGGAA--CATGGCAT-TTGG
1 TAAGACAAAGATACCATGTAAGACCATGCCAAGACATGGAATTGATGACATACT-A
* * * * *
86030138 TAAGATAAGGATATCATGTAAGACCATGCCAAGACATGGAATAGAT-A-AGTTCTA
1 TAAGACAAAGATACCATGTAAGACCATGCCAAGACATGGAATTGATGACA-TACTA
* * * * * * * * ** *
86030192 TAAGGCAAGGAAATCGTGCAAGACCATGTCAAGACATGGCATTGATGAGTTATTA
1 TAAGACAAAGATACCATGTAAGACCATGCCAAGACATGGAATTGATGACATACTA
* * * * * * *
86030247 TAAGGA-AAAGGTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGA-GTTC-A
1 TAA-GACAAAGATACCATGTAAGACCATGCCAAGACATGGAATTGATGACATACTA
* * * *
86030300 TAAGGCAAGGATACCACGTAAGACCATGTCAAGACATGG
1 TAAGACAAAGATACCATGTAAGACCATGCCAAGACATGG
86030339 TAATGGTAAA
Statistics
Matches: 270, Mismatches: 68, Indels: 37
0.72 0.18 0.10
Matches are distributed among these distances:
45 5 0.02
47 29 0.11
48 1 0.00
52 2 0.01
53 61 0.23
54 87 0.32
55 84 0.31
56 1 0.00
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (55 bp):
TAAGACAAAGATACCATGTAAGACCATGCCAAGACATGGAATTGATGACATACTA
Found at i:86030164 original size:209 final size:209
Alignment explanation
Indices: 86029929--86030328 Score: 658
Period size: 209 Copynumber: 1.9 Consensus size: 209
86029919 GCATTGGAAC
* * *
86029929 TAAGATAAGGATATCATGTAAGACCATGCCAA-AGCATGGCATTGATAAGTTATATAAGGTAAGG
1 TAAGATAAGGATATCATGTAAGACCATGCCAAGA-CATGGAATAGATAAGTTATATAAGGCAAGG
* *
86029993 AAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCATGTA
65 AAATCATGCAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGTCCCATGTA
* *
86030058 AGACCATGCCAAGGCATGGAATTGGTGACATCATAAGACAATGATACCATGTAAGACCATGTTTG
130 AGACCATGCCAAGGCATGGAATTGGTGACATCATAAGACAAGGATACCACGTAAGACCATGTTTG
86030123 GAACATGGCATTTGG
195 GAACATGGCATTTGG
*
86030138 TAAGATAAGGATATCATGTAAGACCATGCCAAGACATGGAATAGATAAGTTCTATAAGGCAAGGA
1 TAAGATAAGGATATCATGTAAGACCATGCCAAGACATGGAATAGATAAGTTATATAAGGCAAGGA
* *
86030203 AATCGTGCAAGACCATGTCAAGACATGGCATTGATGAGTTATTATAAGGAAAAGGTCCCATGTAA
66 AATCATGCAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGTCCCATGTAA
* ** *
86030268 GACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCACGTAAGACCATGT
131 GACCATGCCAAGGCATGGAATTGGTGACATCATAAGACAAGGATACCACGTAAGACCATGT
86030329 CAAGACATGG
Statistics
Matches: 176, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
209 175 0.99
210 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (209 bp):
TAAGATAAGGATATCATGTAAGACCATGCCAAGACATGGAATAGATAAGTTATATAAGGCAAGGA
AATCATGCAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGTCCCATGTAA
GACCATGCCAAGGCATGGAATTGGTGACATCATAAGACAAGGATACCACGTAAGACCATGTTTGG
AACATGGCATTTGG
Found at i:86030370 original size:108 final size:108
Alignment explanation
Indices: 86030152--86030375 Score: 263
Period size: 108 Copynumber: 2.1 Consensus size: 108
86030142 ATAAGGATAT
* **
86030152 CATGTAAGACCATGCCAAGACATGGAATAGATAAGTTCTATAAGGCAAGGAAATCGTGCAAGACC
1 CATGTAAGACCATGCCAAGACATGGAATAGATAAGTTCTATAAGGCAAGGAAACCACGCAAGACC
* * * *
86030217 ATGTCAAGACATGGCATTGATGAGTTATTATAAGGAAAAGGTCC
66 ATGTCAAGACATGGCAATGATAAATTA-TAGAAGGAAAAGGTCC
* * * * * * *
86030261 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCACGTAAGACC
1 CATGTAAGACCATGCCAAGACATGGAATAGATAAGTTCTATAAGGCAAGGAAACCACGCAAGACC
* *
86030325 ATGTCAAGACATGGTAATGGTAAATTCA-AGAAGGAAAAGGTTCC
66 ATGTCAAGACATGGCAATGATAAATT-ATAGAAGGAAAAGG-TCC
86030369 CATGTAA
1 CATGTAA
86030376 TCCAAAGAGT
Statistics
Matches: 97, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
107 11 0.11
108 52 0.54
109 34 0.35
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.21
Consensus pattern (108 bp):
CATGTAAGACCATGCCAAGACATGGAATAGATAAGTTCTATAAGGCAAGGAAACCACGCAAGACC
ATGTCAAGACATGGCAATGATAAATTATAGAAGGAAAAGGTCC
Found at i:86033154 original size:23 final size:23
Alignment explanation
Indices: 86033121--86033177 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
86033111 GAGATGATGG
*
86033121 ACAGTAAGCTCT-ATTGAGCTGAA
1 ACAGTAAGCTCTGA-CGAGCTGAA
*
86033144 ACGGTAAGCTCTGACGAGCTGAA
1 ACAGTAAGCTCTGACGAGCTGAA
86033167 ACAGTAAGCTC
1 ACAGTAAGCTC
86033178 CAACAAGTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
23 29 0.97
24 1 0.03
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (23 bp):
ACAGTAAGCTCTGACGAGCTGAA
Found at i:86033189 original size:23 final size:23
Alignment explanation
Indices: 86033137--86033190 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
86033127 AGCTCTATTG
* ** *
86033137 AGCTGAAACGGTAAGCTCTGACG
1 AGCTGAAACAGTAAGCTCCAACA
86033160 AGCTGAAACAGTAAGCTCCAACA
1 AGCTGAAACAGTAAGCTCCAACA
*
86033183 AGTTGAAA
1 AGCTGAAA
86033191 ACTACAAGCT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.39, C:0.20, G:0.24, T:0.17
Consensus pattern (23 bp):
AGCTGAAACAGTAAGCTCCAACA
Found at i:86035500 original size:12 final size:12
Alignment explanation
Indices: 86035483--86035508 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
86035473 CTACACATGC
86035483 CCGTGTGCTAGG
1 CCGTGTGCTAGG
86035495 CCGTGTGCTAGG
1 CCGTGTGCTAGG
86035507 CC
1 CC
86035509 ATGCCAAACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.31, G:0.38, T:0.23
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:86037345 original size:49 final size:49
Alignment explanation
Indices: 86037195--86037463 Score: 175
Period size: 49 Copynumber: 5.6 Consensus size: 49
86037185 ATGGGATAAA
* * * *
86037195 ATGCCATGTCCC-GAATAGGTCTTACACT-GACTTTCATACATCGAGGCCG
1 ATGCCATGTCCCAG-ACAGGTCTTACACTAG-CTCTCATATATCGAGGCTG
* * * *
86037244 ATGCCGTGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCGATG-TCG
1 ATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATATATCGAGGCT-G
* * *
86037293 ATGCCATGTCCCAGACAGGTCTTACACAAGCT-TGTATATCTCGAGGCTG
1 ATGCCATGTCCCAGACAGGTCTTACACTAGCTCT-CATATATCGAGGCTG
* * * * * ** *
86037342 ATG-CATGTCCCAAACATGTCTTACACTAGCTCT--TGTCTCAATACCG
1 ATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATATATCGAGGCTG
* * ** * *
86037388 ATG-CATGTCTCAAACATTTCTTACACTGGCTCTCATA-AT--ATGGCCG
1 ATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATATATCGA-GGCTG
*
86037434 ATG-CATGTCCCAGACATGTCTTACACTAGC
1 ATGCCATGTCCCAGACAGGTCTTACACTAGC
86037464 ACACATATCA
Statistics
Matches: 178, Mismatches: 33, Indels: 21
0.77 0.14 0.09
Matches are distributed among these distances:
45 1 0.01
46 67 0.38
47 1 0.01
48 27 0.15
49 79 0.44
50 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (49 bp):
ATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCATATATCGAGGCTG
Found at i:86037402 original size:46 final size:44
Alignment explanation
Indices: 86037341--86037463 Score: 142
Period size: 46 Copynumber: 2.7 Consensus size: 44
86037331 TCTCGAGGCT
86037341 GATGCATGTCCCAAACATGTCTTACACTAGCTCTTGTC-TCAATA-CC
1 GATGCATGTCCCAAACATGTCTTACACTAGCTC---TCAT-AATAGCC
* * *
86037387 GATGCATGTCTCAAACATTTCTTACACTGGCTCTCATAATATGGCC
1 GATGCATGTCCCAAACATGTCTTACACTAGCTCTCATAATA--GCC
*
86037433 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAAACATGTCTTACACTAGC
86037464 ACACATATCA
Statistics
Matches: 66, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
43 6 0.09
44 1 0.02
46 59 0.89
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.30
Consensus pattern (44 bp):
GATGCATGTCCCAAACATGTCTTACACTAGCTCTCATAATAGCC
Found at i:86039592 original size:47 final size:47
Alignment explanation
Indices: 86039526--86040069 Score: 937
Period size: 47 Copynumber: 11.4 Consensus size: 47
86039516 TATCACAGTT
* * * *
86039526 ATACACTTCCAC-TTCCATCACATTGACCATTCGGCCTTATCATATAT
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCACATAC
*
86039573 ATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
86039620 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
*
86039667 GTACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
*
86039714 GTACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
86039763 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
86039810 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
86039857 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
86039906 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
86039953 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
86040002 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
86040051 ATACACTTTCACATTCATC
1 ATACACTTTCACATTCATC
86040070 GTAACAAAAT
Statistics
Matches: 482, Mismatches: 8, Indels: 12
0.96 0.02 0.02
Matches are distributed among these distances:
47 315 0.65
48 2 0.00
49 165 0.34
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (47 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
Found at i:86039664 original size:22 final size:22
Alignment explanation
Indices: 86039636--86039758 Score: 70
Period size: 22 Copynumber: 5.3 Consensus size: 22
86039626 TTTCACATTC
86039636 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * * * *
86039658 ATCACATACGTACACTTTC-ACATT
1 ATCACAT-TG-GC-CATTCGGCCTT
86039682 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * * *
86039705 ATCACATACGTACACTTTC-ACATT
1 ATCACAT-TG-GC-CATTCGGCCTT
86039729 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
86039752 ATCACAT
1 ATCACAT
86039759 ATACATACAC
Statistics
Matches: 71, Mismatches: 20, Indels: 20
0.64 0.18 0.18
Matches are distributed among these distances:
22 29 0.41
23 10 0.14
24 10 0.14
25 22 0.31
ACGTcount: A:0.25, C:0.32, G:0.11, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:86039808 original size:96 final size:94
Alignment explanation
Indices: 86039526--86040069 Score: 937
Period size: 96 Copynumber: 5.7 Consensus size: 94
86039516 TATCACAGTT
* * * * *
86039526 ATACACTTCCAC-TTCCATCACATTGACCATTCGGCCTTATCATATATATATACTTTCACATTCA
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCA
86039590 TCACATTGGCCATTCGGCCTTATCACATAC
65 TCACATTGGCCATTCGGCCTTATCACATAC
*
86039620 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATACGTACACTTTCACATTCAT
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCAT
86039685 CACATTGGCCATTCGGCCTTATCACATAC
66 CACATTGGCCATTCGGCCTTATCACATAC
*
86039714 GTACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATACATACACTTTCACATTC
86039779 ATCACATTGGCCATTCGGCCTTATCACATAC
64 ATCACATTGGCCATTCGGCCTTATCACATAC
86039810 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCAT
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCAT
86039875 CACATTGGCCATTCGGCCTTATCACATATAC
66 CACATTGGCCATTCGGCCTTATCAC--ATAC
86039906 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCAT
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCAT
86039971 CACATTGGCCATTCGGCCTTATCACATATAC
66 CACATTGGCCATTCGGCCTTATCAC--ATAC
86040002 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATACATACACTTTCACATTC
86040067 ATC
64 ATC
86040070 GTAACAAAAT
Statistics
Matches: 434, Mismatches: 9, Indels: 10
0.96 0.02 0.02
Matches are distributed among these distances:
94 174 0.40
95 2 0.00
96 235 0.54
98 23 0.05
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (94 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCAT
CACATTGGCCATTCGGCCTTATCACATAC
Found at i:86039827 original size:143 final size:143
Alignment explanation
Indices: 86039526--86040069 Score: 977
Period size: 143 Copynumber: 3.8 Consensus size: 143
86039516 TATCACAGTT
* * * * *
86039526 ATACACTTCCAC-TTCCATCACATTGACCATTCGGCCTTATCATATATATATACTTTCACATTCA
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCA
86039590 TCACATTGGCCATTCGGCCTTATCAC--ATACATACACTTTCACATTCATCACATTGGCCATTCG
65 TCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTCATCACATTGGCCATTCG
86039653 GCCTTATCACATAC
130 GCCTTATCACATAC
* *
86039667 GTACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATACGTACACTTTCACATTCAT
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCAT
86039732 CACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTCATCACATTGGCCATTCGG
66 CACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTCATCACATTGGCCATTCGG
86039797 CCTTATCACATAC
131 CCTTATCACATAC
86039810 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCAT
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCAT
86039875 CACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTCATCACATTGGCCATTCGG
66 CACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTCATCACATTGGCCATTCGG
86039940 CCTTATCACATAC
131 CCTTATCACATAC
86039953 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATACATACACTTTCACATTC
86040018 ATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTCATC
64 ATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTCATC
86040070 GTAACAAAAT
Statistics
Matches: 389, Mismatches: 9, Indels: 6
0.96 0.02 0.01
Matches are distributed among these distances:
141 80 0.21
142 2 0.01
143 235 0.60
145 72 0.19
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (143 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATACATACACTTTCACATTCAT
CACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTCATCACATTGGCCATTCGG
CCTTATCACATAC
Found at i:86056004 original size:28 final size:28
Alignment explanation
Indices: 86055964--86056073 Score: 114
Period size: 28 Copynumber: 3.7 Consensus size: 28
86055954 AGTACAGTTT
*
86055964 GGGCCTAAGCCCATTTCAGTTCCAGATA
1 GGGCCTAAGCCCATTACAGTTCCAGATA
*
86055992 GGGCCTTAGCCCATTACAGTAT-CAGTATCA
1 GGGCCTAAGCCCATTACAGT-TCCAG-AT-A
*
86056022 GTTTGGGCCTAAGCCCATTTCAGTTCCAGATA
1 ----GGGCCTAAGCCCATTACAGTTCCAGATA
*
86056054 GGGCCTTAGCCCATTACAGT
1 GGGCCTAAGCCCATTACAGT
86056074 ATCAGTATCA
Statistics
Matches: 68, Mismatches: 6, Indels: 16
0.76 0.07 0.18
Matches are distributed among these distances:
28 39 0.57
29 3 0.04
30 1 0.01
32 1 0.01
33 3 0.04
34 21 0.31
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (28 bp):
GGGCCTAAGCCCATTACAGTTCCAGATA
Found at i:86056030 original size:34 final size:33
Alignment explanation
Indices: 86055992--86056107 Score: 118
Period size: 34 Copynumber: 3.6 Consensus size: 33
86055982 GTTCCAGATA
86055992 GGGCCTTAGCCCATTACAGTATCAGTATCAGTTT
1 GGGCCTTAGCCCATTACAGTATCAGTATCA-TTT
* *
86056026 GGGCCTAAGCCCATTTCAGT-TCCAG-AT-A---
1 GGGCCTTAGCCCATTACAGTAT-CAGTATCATTT
86056054 GGGCCTTAGCCCATTACAGTATCAGTATCAATTT
1 GGGCCTTAGCCCATTACAGTATCAGTATC-ATTT
* * *
86056088 GGGTCTGAGCCCATTTCAGT
1 GGGCCTTAGCCCATTACAGT
86056108 TAAGTAACAG
Statistics
Matches: 67, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
28 21 0.31
29 3 0.04
31 1 0.01
32 1 0.01
33 3 0.04
34 38 0.57
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.30
Consensus pattern (33 bp):
GGGCCTTAGCCCATTACAGTATCAGTATCATTT
Found at i:86056055 original size:62 final size:62
Alignment explanation
Indices: 86055954--86056108 Score: 276
Period size: 62 Copynumber: 2.5 Consensus size: 62
86055944 ATAGTGAGTA
86055954 AGTA-CAGTTTGGGCCTAAGCCCATTTCAGTTCCAGATAGGGCCTTAGCCCATTACAGTATC
1 AGTATCAGTTTGGGCCTAAGCCCATTTCAGTTCCAGATAGGGCCTTAGCCCATTACAGTATC
86056015 AGTATCAGTTTGGGCCTAAGCCCATTTCAGTTCCAGATAGGGCCTTAGCCCATTACAGTATC
1 AGTATCAGTTTGGGCCTAAGCCCATTTCAGTTCCAGATAGGGCCTTAGCCCATTACAGTATC
* * *
86056077 AGTATCAATTTGGGTCTGAGCCCATTTCAGTT
1 AGTATCAGTTTGGGCCTAAGCCCATTTCAGTT
86056109 AAGTAACAGT
Statistics
Matches: 90, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
61 4 0.04
62 86 0.96
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (62 bp):
AGTATCAGTTTGGGCCTAAGCCCATTTCAGTTCCAGATAGGGCCTTAGCCCATTACAGTATC
Found at i:86059976 original size:45 final size:45
Alignment explanation
Indices: 86059919--86060090 Score: 299
Period size: 45 Copynumber: 3.8 Consensus size: 45
86059909 CATTTCATCG
86059919 GCATTATAGCCTGCTAGGCTCAAAGGCCCCAATAGTATCTCACCA
1 GCATTATAGCCTGCTAGGCTCAAAGGCCCCAATAGTATCTCACCA
86059964 GCATTATAGCCTGCTAGGCTCAAAGGCCCCAATAGTATCTCACCA
1 GCATTATAGCCTGCTAGGCTCAAAGGCCCCAATAGTATCTCACCA
* * *
86060009 GCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATATCACCG
1 GCATTATAGCCTGCTAGGCTCAAAGGCCCCAATAGTATCTCACCA
**
86060054 GCATTATAGCCTGCTAGGCTCAAAGGCCAGAATAGTA
1 GCATTATAGCCTGCTAGGCTCAAAGGCCCCAATAGTA
86060091 CTGTACGATA
Statistics
Matches: 123, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
45 123 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
GCATTATAGCCTGCTAGGCTCAAAGGCCCCAATAGTATCTCACCA
Found at i:86060949 original size:47 final size:47
Alignment explanation
Indices: 86060892--86061127 Score: 409
Period size: 47 Copynumber: 5.0 Consensus size: 47
86060882 AAAATTTTAT
* * * *
86060892 TTAACGAAGTAACTTATCCGGAAATAATAAGAGCAAATTTAACAAGC
1 TTAACTAAGTAACTTGTCCGGAAATATTAAGAACAAATTTAACAAGC
*
86060939 TTAACTAAGTAACTTGTCTGGAAATATTAAGAACAAATTTAACAAGC
1 TTAACTAAGTAACTTGTCCGGAAATATTAAGAACAAATTTAACAAGC
86060986 TTAACTAAGTAACTTGTCCGGAAATATTAAGAACAAATTTAACAAGC
1 TTAACTAAGTAACTTGTCCGGAAATATTAAGAACAAATTTAACAAGC
*
86061033 TTAACTAAGTAACTTGTCTGGAAATATTAAGAACAAATTTAACAAGC
1 TTAACTAAGTAACTTGTCCGGAAATATTAAGAACAAATTTAACAAGC
*
86061080 TTAACTAAGTAACTTGTCCGGAAATATTAAGAGCAAATTTAACAAGC
1 TTAACTAAGTAACTTGTCCGGAAATATTAAGAACAAATTTAACAAGC
86061127 T
1 T
86061128 CTAAATTCAA
Statistics
Matches: 180, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 180 1.00
ACGTcount: A:0.44, C:0.14, G:0.14, T:0.28
Consensus pattern (47 bp):
TTAACTAAGTAACTTGTCCGGAAATATTAAGAACAAATTTAACAAGC
Found at i:86065516 original size:56 final size:56
Alignment explanation
Indices: 86065456--86065661 Score: 263
Period size: 56 Copynumber: 3.7 Consensus size: 56
86065446 AGATAGGGTT
* * *
86065456 TTACTTGCACACAGATATTGGAATCACATATCGATGCCAACGTATAAAACGTGGTC
1 TTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATAAAACGTGGTC
**
86065512 TTACTCGCACACATATATCAAAATCACATATCGATGCCAACGTATAAAACGTGGTC
1 TTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATAAAACGTGGTC
* ****
86065568 TTACTCGCACATATATATCGGAATCACATATCGATGCTGGGGTATAAAACGTGGTC
1 TTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATAAAACGTGGTC
* * *
86065624 TTTCAT-GCACACATATAT-TGAATTCACATGTCGATGCC
1 TTAC-TCGCACACATATATCGGAA-TCACATATCGATGCC
86065662 TCATATACAT
Statistics
Matches: 131, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
55 3 0.02
56 127 0.97
57 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (56 bp):
TTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATAAAACGTGGTC
Found at i:86068075 original size:46 final size:46
Alignment explanation
Indices: 86068023--86068114 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
86068013 TACCTTCCCT
86068023 TTTGCTGATAATTCACTGTAATTTAACGTGTACAATGACCCGTTGA
1 TTTGCTGATAATTCACTGTAATTTAACGTGTACAATGACCCGTTGA
86068069 TTTGCTGATAATTCACTGTAATTTAACGTGTACAATGACCCGTTGA
1 TTTGCTGATAATTCACTGTAATTTAACGTGTACAATGACCCGTTGA
86068115 ACCACTCGGA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.37
Consensus pattern (46 bp):
TTTGCTGATAATTCACTGTAATTTAACGTGTACAATGACCCGTTGA
Found at i:86073162 original size:21 final size:20
Alignment explanation
Indices: 86073125--86073167 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
86073115 CTACTCCAAG
*
86073125 GAAGCCGATTGATCCATCTAA
1 GAAGCCGATTCATCCAT-TAA
86073146 GAAGCCGGATTCA-CCATTAA
1 GAAGCC-GATTCATCCATTAA
86073166 GA
1 GA
86073168 CTGAAGATCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 5 0.25
21 10 0.50
22 5 0.25
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.21
Consensus pattern (20 bp):
GAAGCCGATTCATCCATTAA
Found at i:86078696 original size:27 final size:27
Alignment explanation
Indices: 86078666--86078843 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
86078656 ATATTGAGCC
* *
86078666 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
86078693 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
86078720 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
86078748 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* * **
86078775 CGCACTCTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
86078802 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
86078829 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
86078844 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:86088249 original size:48 final size:46
Alignment explanation
Indices: 86088178--86088299 Score: 122
Period size: 46 Copynumber: 2.6 Consensus size: 46
86088168 TCAATAAGCT
* * *
86088178 GATGCCATGTCCCAGATAGGTCTTACACAAGCT-TCAATATCTCGA-GCC
1 GATG-CATGTCCCAGACATGTCTTACACAAGCTCTC---ATCTCAATGCC
* * * *
86088226 AGATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCAATGTC
1 -GATGCATGTCCCAGACATGTCTTACACAAGCTCTCATCTCAATGCC
86088273 GATGCATGTCCCAGACATGTCTTACAC
1 GATGCATGTCCCAGACATGTCTTACAC
86088300 TAGCACACAT
Statistics
Matches: 63, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
46 31 0.49
47 2 0.03
48 24 0.38
49 6 0.10
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACAAGCTCTCATCTCAATGCC
Found at i:86090521 original size:29 final size:29
Alignment explanation
Indices: 86090485--86090566 Score: 94
Period size: 29 Copynumber: 2.9 Consensus size: 29
86090475 TGAAATTCTA
**
86090485 ATAT-CATGGCTCGAAGCCAAATCAGTGG
1 ATATGCATGGCTCGAAGCCAAATCAGCCG
* * * *
86090513 ATATGCATGGCCCGAAACCAAATAAGCCT
1 ATATGCATGGCTCGAAGCCAAATCAGCCG
*
86090542 ATATGCATGGCTCGGAGCCAAATCA
1 ATATGCATGGCTCGAAGCCAAATCA
86090567 ATTTATCTTA
Statistics
Matches: 43, Mismatches: 10, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
28 4 0.09
29 39 0.91
ACGTcount: A:0.34, C:0.24, G:0.22, T:0.20
Consensus pattern (29 bp):
ATATGCATGGCTCGAAGCCAAATCAGCCG
Found at i:86091700 original size:27 final size:27
Alignment explanation
Indices: 86091666--86091811 Score: 141
Period size: 27 Copynumber: 5.4 Consensus size: 27
86091656 TGGATAAGTT
*
86091666 GTAGAATTATCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAAG
*
86091693 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAAG
* *
86091720 GTAGAATTACTGAAATACCCTTGT-AG
1 GTAGAATTACCGAAATACCCCTGTAAG
* * * * **
86091746 ATTAGAAATATCAAAATACCCCTGTGGG
1 -GTAGAATTACCGAAATACCCCTGTAAG
* * * *
86091774 GTAGAATTACCGAGATACCCTTATAGG
1 GTAGAATTACCGAAATACCCCTGTAAG
*
86091801 GTAAAATTACC
1 GTAGAATTACC
86091812 ATTTTGCCCC
Statistics
Matches: 96, Mismatches: 21, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
26 1 0.01
27 94 0.98
28 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAAG
Found at i:86091752 original size:54 final size:54
Alignment explanation
Indices: 86091666--86091812 Score: 156
Period size: 54 Copynumber: 2.7 Consensus size: 54
86091656 TGGATAAGTT
* * *
86091666 GTAGAATTA-TCGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACT-GAAATACCCTTGTAAGGTAGAAATACCAAAATACCCCTGTAGG
* * *
86091720 GTAGAATTACTGAAATACCCTTGT-AGATTAGAAATATCAAAATACCCCTGTGGG
1 GTAGAATTACTGAAATACCCTTGTAAG-GTAGAAATACCAAAATACCCCTGTAGG
* * * *
86091774 GTAGAATTACCGAGATACCCTTATAGGGTA-AAATTACCA
1 GTAGAATTACTGAAATACCCTTGTAAGGTAGAAA-TACCA
86091813 TTTTGCCCCT
Statistics
Matches: 77, Mismatches: 12, Indels: 8
0.79 0.12 0.08
Matches are distributed among these distances:
53 5 0.06
54 70 0.91
55 2 0.03
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (54 bp):
GTAGAATTACTGAAATACCCTTGTAAGGTAGAAATACCAAAATACCCCTGTAGG
Found at i:86095054 original size:47 final size:47
Alignment explanation
Indices: 86094903--86096108 Score: 2012
Period size: 47 Copynumber: 25.6 Consensus size: 47
86094893 TATTTGAATA
86094903 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
86094952 AATGTGAAA-TGTATATATGTGATAAGGCCTAAT-GCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
86094997 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
86095044 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC-ATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
86095090 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
86095139 AATGTGAAA-TGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
86095185 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
86095232 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
86095279 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC-ATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
86095325 AATGTGAAAGTGTATATATATATGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
86095374 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
86095421 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
86095468 AATGTGAAATTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
86095515 AATGTGAAAGTGTATATATATGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
86095562 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
86095611 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
86095658 AATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
86095705 AATGTGAAA-TGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
86095751 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
86095800 AATGTGAAA-TGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
86095846 AATGTGAAAGTGTATATATATGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
86095893 AATGTGAAAGTGTATATATTGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATA-TGTGATAAGGCCTAATGGCCGATGTGATG
86095941 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
86095988 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
86096035 AATGTGAAAGTGTATATATGCGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
86096082 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
86096109 TCCGAAGGGC
Statistics
Matches: 1095, Mismatches: 46, Indels: 34
0.93 0.04 0.03
Matches are distributed among these distances:
45 21 0.02
46 215 0.20
47 626 0.57
48 100 0.09
49 133 0.12
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:86095394 original size:25 final size:25
Alignment explanation
Indices: 86095366--86095444 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
86095356 CTAATGGCCG
86095366 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* * ***
86095391 ATGTGAT-AAGGCCG-AA-TGGCCA-
1 ATGTGATGAATG-TGAAAGTGTATAT
86095413 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
86095438 ATGTGAT
1 ATGTGAT
86095445 AAGGCCTAAT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 8 0.21
23 8 0.21
24 8 0.21
25 15 0.38
ACGTcount: A:0.34, C:0.05, G:0.29, T:0.32
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:86095509 original size:330 final size:330
Alignment explanation
Indices: 86094903--86096108 Score: 2124
Period size: 330 Copynumber: 3.7 Consensus size: 330
86094893 TATTTGAATA
86094903 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-TGTATA
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
86094967 TATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
65 TATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGATAAGGCCTAAT
86095031 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC-ATGTGATGAATGT
130 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT
86095095 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATGTATATATGTG
195 GAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATGTATATATGTG
* * * *
86095160 ATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
259 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGATAAGGCCTAATAGCCGA
86095225 TGTGATG
324 TGTGATG
*
86095232 AATGTGAAAGTG-TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
86095296 ATGTGATAAGGCCGAATGGCC-ATGTGATGAATGTGAAAGTGTATATATATATGATAAGGCCTAA
66 ATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG--TATATATATGATAAGGCCTAA
86095360 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
129 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
86095425 TGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATTGTATATATGT
194 TGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-TGTATATATGT
86095489 GATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGATAAGGCCTAATAGCCG
258 GATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGATAAGGCCTAATAGCCG
86095554 ATGTGATG
323 ATGTGATG
86095562 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
86095627 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGATAAGGCCTAAT
65 TATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGATAAGGCCTAAT
86095692 GGCCGATGTGATGAATGTGAAA-TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT
130 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT
86095756 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATGTATATATGTG
195 GAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATGTATATATGTG
86095821 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGATAAGGCCTAATAGCCGA
259 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGATAAGGCCTAATAGCCGA
86095886 TGTGATG
324 TGTGATG
86095893 AATGTGAAAGTG-TATATATTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGATATATA-TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
86095957 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
65 TATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGATAAGGCCTAAT
* * * * * *
86096022 GGCCGATGTGATGAATGTGAAAGTGTATATATGCGACAGGGCCGAGTGGCCAACGTGATGGATGT
130 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT
*
86096087 GAAAGTG-TATAAATGTGATAAG
195 GAAAGTGATATATATGTGATAAG
86096109 TCCGAAGGGC
Statistics
Matches: 846, Mismatches: 18, Indels: 26
0.95 0.02 0.03
Matches are distributed among these distances:
327 43 0.05
328 43 0.05
329 79 0.09
330 342 0.40
331 203 0.24
332 116 0.14
333 20 0.02
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (330 bp):
AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGATAAGGCCTAATG
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
AAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATGTATATATGTGAT
AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGATAAGGCCTAATAGCCGATG
TGATG
Found at i:86096327 original size:37 final size:37
Alignment explanation
Indices: 86096226--86096327 Score: 168
Period size: 37 Copynumber: 2.8 Consensus size: 37
86096216 CCGAGCTCTA
*
86096226 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
86096263 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
* * *
86096300 AAGACCCGATAACTTCATGTGGAGATTT
1 AAGACCCGATGACTACGTGTGGAGATTT
86096328 CGTCTGAGCT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
Found at i:86097661 original size:40 final size:40
Alignment explanation
Indices: 86097617--86097826 Score: 296
Period size: 40 Copynumber: 5.2 Consensus size: 40
86097607 GGGCTAAATC
86097617 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
86097657 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
86097697 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
* * ***
86097737 CCGAAGAGCATTCGTGCTAGTGATATAT-CGGTGCTAAACC
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGG-ACTAAGTT
* * * * * * *
86097777 CCGAAGAGCATTTGTGCTGGTGTTATATCCGGGCTAGGTC
1 CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
86097817 CCGAAGAGCA
1 CCGAAGAGCA
86097827 ATCATGCTGG
Statistics
Matches: 157, Mismatches: 11, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
39 3 0.02
40 151 0.96
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTT
Found at i:86098819 original size:48 final size:48
Alignment explanation
Indices: 86098748--86098890 Score: 231
Period size: 48 Copynumber: 3.0 Consensus size: 48
86098738 GTTAAGGATT
86098748 TTCATCACATCGGCCATTAGGCCTTATCACATATAATACACTTTCACA
1 TTCATCACATCGGCCATTAGGCCTTATCACATATAATACACTTTCACA
* *
86098796 TTCATCACATCGGCTATTAGGCCTTATCACATAT-ATACAATTTCACA
1 TTCATCACATCGGCCATTAGGCCTTATCACATATAATACACTTTCACA
86098843 TTCATCAC-TC-GCCATTAGG-CTTATCACATATATATACACTTTCACA
1 TTCATCACATCGGCCATTAGGCCTTATCACATATA-ATACACTTTCACA
86098889 TT
1 TT
86098891 TATTCAAATA
Statistics
Matches: 89, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
44 12 0.13
45 8 0.09
46 16 0.18
47 20 0.22
48 33 0.37
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.34
Consensus pattern (48 bp):
TTCATCACATCGGCCATTAGGCCTTATCACATATAATACACTTTCACA
Found at i:86159925 original size:27 final size:27
Alignment explanation
Indices: 86159894--86160070 Score: 194
Period size: 27 Copynumber: 6.5 Consensus size: 27
86159884 TAAATTGTAC
*
86159894 AGCACTAAGCGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
86159921 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
86159947 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
86159975 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
86160003 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
86160030 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
86160057 AGCACTGAGTGTGC
1 AGCACTAAGTGTGC
86160071 AGGCTCAATA
Statistics
Matches: 127, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:86160008 original size:82 final size:81
Alignment explanation
Indices: 86159895--86160050 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
86159885 AAATTGTACA
* *
86159895 GCACTAAGCGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGCGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
86159959 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
86159976 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGCGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
86160041 TGCGAGTTGA
65 TGCGAATTGA
86160051 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 14 0.21
82 51 0.77
83 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGCGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:86160062 original size:82 final size:81
Alignment explanation
Indices: 86159891--86160070 Score: 218
Period size: 82 Copynumber: 2.2 Consensus size: 81
86159881 GATTAAATTG
* * *
86159891 TACAGCACTAAGCGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
86159956 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
86159972 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
86160036 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
86160054 TATAGCACTGAGTGTGC
1 TACAGCACTAAGTGTGC
86160071 AGGCTCAATA
Statistics
Matches: 82, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 17 0.21
82 65 0.79
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:86164015 original size:28 final size:28
Alignment explanation
Indices: 86163952--86164157 Score: 281
Period size: 28 Copynumber: 7.4 Consensus size: 28
86163942 ATAATAAGTC
* *
86163952 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
86163979 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
86164007 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
*
86164035 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
86164063 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
* *
86164091 CGCACACTTAGTGCTACATAGTC-AATT
1 CGCACACTTAGTGCTACATAATCAAACT
* * * *
86164118 CGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAA-TCAAACT
86164147 CGCACACTTAG
1 CGCACACTTAG
86164158 CGCCAATCTC
Statistics
Matches: 164, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
27 43 0.26
28 108 0.66
29 13 0.08
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:86182125 original size:93 final size:93
Alignment explanation
Indices: 86182012--86182180 Score: 259
Period size: 93 Copynumber: 1.8 Consensus size: 93
86182002 CCCATAAGCA
**
86182012 AACTCAGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTTGGAATCAACTCAA
1 AACTCAGACTCAACTCAACGAG-TCAGGACGTTCGCATCCATAAGTGAACTCAGAATCAACTCAA
*
86182076 CGAGTTTGGATGCCTAGTTACATTTCATG
65 CGAGTTCGGATGCCTAGTTACATTTCATG
* ** *
86182105 AACTCGGACTCAACTCAACGAGTTTGGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
1 AACTCAGACTCAACTCAACGAGTCAGGACGTTCGCATCCATAAGTGAACTCAGAATCAACTCAAC
86182170 GAGTTCGGATG
66 GAGTTCGGATG
86182181 TTCGCATCCA
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
92 3 0.04
93 65 0.96
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.24
Consensus pattern (93 bp):
AACTCAGACTCAACTCAACGAGTCAGGACGTTCGCATCCATAAGTGAACTCAGAATCAACTCAAC
GAGTTCGGATGCCTAGTTACATTTCATG
Found at i:86182223 original size:46 final size:46
Alignment explanation
Indices: 86182003--86182226 Score: 238
Period size: 46 Copynumber: 4.8 Consensus size: 46
86181993 TGTAACCCGC
** * *
86182003 CCATAAGCAAACTCAGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTC-GGATGTTCGCAT
** * * * * *
86182049 CCATAAGTGAACTTGGAATCAACTCAACGAGTTTGGATGCCTAG-TT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATG-TTCGCAT
* * * * *
86182095 ACATTTCA-TGAACTCGGACTCAACTCAACGAGTTTGGACGTTCGCAT
1 CCA--TAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGTTCGCAT
86182142 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGTTCGCAT
*
86182188 CCATAAGTGAACTCAGACTCAACTCAACGAATTCGGATG
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATG
86182227 CCCAAATATC
Statistics
Matches: 147, Mismatches: 25, Indels: 12
0.80 0.14 0.07
Matches are distributed among these distances:
45 4 0.03
46 107 0.73
47 34 0.23
48 2 0.01
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGTTCGCAT
Found at i:86189484 original size:43 final size:42
Alignment explanation
Indices: 86189387--86189506 Score: 136
Period size: 43 Copynumber: 2.8 Consensus size: 42
86189377 AGGGTTACTA
* *
86189387 AGATTACATGTAAGACCATATATGAGATATGGCATCAATATG
1 AGATTACATGTAAGACCATACATGAGATATGGCATCAATACG
* * * * *
86189429 AGACTT-CGTGTAAGACCATACCTGGGCTATTGGCATCGATACG
1 AGA-TTACATGTAAGACCATACATGAGATA-TGGCATCAATACG
86189472 AGATTACATGTAAGACCATATC-TGAGATATGGCAT
1 AGATTACATGTAAGACCATA-CATGAGATATGGCAT
86189507 TGGTATGGTA
Statistics
Matches: 64, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
42 29 0.45
43 34 0.53
44 1 0.02
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.28
Consensus pattern (42 bp):
AGATTACATGTAAGACCATACATGAGATATGGCATCAATACG
Found at i:86191544 original size:180 final size:180
Alignment explanation
Indices: 86191266--86191615 Score: 515
Period size: 180 Copynumber: 1.9 Consensus size: 180
86191256 TAGCTGGAGC
*** * *
86191266 TACGGAACTCCAAATTAAGATTTGTTAATTTTCCCAAAAACTAGACTAACATATATTCTTACCAT
1 TACGGAACTCCAAATTAAGAACAGCTAATTTTCCCAAAAACTAGACTAACAAATATTCTTACCAT
86191331 AAAATTTTCAGAATTTTTGGTTTAGCAAATTAGTACAGTTTATGCATTAAAGT-TACCCCTATTT
66 AAAATTTTCAGAATTTTTGGTTTAGCAAATTAGTACAGTTTATGCATTAAA-TATACCCCTATTT
86191395 CACTATC-GAACAGTTCCAACCTCTCTTCACTAAAAATTATTTGTCTCATTG
130 CACTATCTG-ACAGTTCCAACCTCTCTTCACTAAAAATTATTTGTCTCATTG
* * *
86191446 TACGGGACTCCAAATTAAGAACAGCTAATTTTCCCAAAAATTAGACTCACAAATATTCTTACCAT
1 TACGGAACTCCAAATTAAGAACAGCTAATTTTCCCAAAAACTAGACTAACAAATATTCTTACCAT
* * * *
86191511 AAAATTTTTAGAATTTTTGGTTTAGCCAATTAGTACAGTTTATTCATTAAATATACCCCTGTTTC
66 AAAATTTTCAGAATTTTTGGTTTAGCAAATTAGTACAGTTTATGCATTAAATATACCCCTATTTC
* * * * *
86191576 ACTGTCTGATAGTTCCAATCTTTCTTTACTAAAAATTATT
131 ACTATCTGACAGTTCCAACCTCTCTTCACTAAAAATTATT
86191616 AATCTCATGG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
179 1 0.01
180 149 0.99
181 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.09, T:0.38
Consensus pattern (180 bp):
TACGGAACTCCAAATTAAGAACAGCTAATTTTCCCAAAAACTAGACTAACAAATATTCTTACCAT
AAAATTTTCAGAATTTTTGGTTTAGCAAATTAGTACAGTTTATGCATTAAATATACCCCTATTTC
ACTATCTGACAGTTCCAACCTCTCTTCACTAAAAATTATTTGTCTCATTG
Found at i:86192321 original size:52 final size:50
Alignment explanation
Indices: 86192196--86192329 Score: 160
Period size: 50 Copynumber: 2.6 Consensus size: 50
86192186 CTCTGGTACG
* * **
86192196 CATAGTAGCCTGCACTTAGTACTACAGATGCGACCTAAAAATCTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAAAATCTGAAACA
* * * *
86192246 CGTAGTAGCCTGCACTTAATACTACACATGTGACCTAAAACGGTCTTAAACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAAA--ATCTGAAACA
**
86192298 CATAGTAGCCTGCACACAGTACTACACATGTG
1 CATAGTAGCCTGCACTTAGTACTACACATGTG
86192330 TTCTCACAAT
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
50 36 0.51
52 34 0.49
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAAAATCTGAAACA
Found at i:86193283 original size:6 final size:6
Alignment explanation
Indices: 86193262--86193439 Score: 150
Period size: 6 Copynumber: 28.8 Consensus size: 6
86193252 TATTAGAACT
* * *
86193262 AGAATC AAAATG AGAATC AGAATC AG-GTGAC AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* *
86193311 AGAATC AGAATC AGAATT AGGTAAT- AGAATC AGAATC AGTATC AAGTAA-C
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC -AG-AATC
* *
86193361 AGAATC AGAATC AGAACC AGAATC AGAATT AGGTAA-C AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
* *
86193410 AGTATT AGGTAA-C AGAATC AGAATC AGAAT
1 AGAATC A-G-AATC AGAATC AGAATC AGAAT
86193440 GTGAATGCAA
Statistics
Matches: 140, Mismatches: 17, Indels: 30
0.75 0.09 0.16
Matches are distributed among these distances:
5 10 0.07
6 110 0.79
7 12 0.09
8 8 0.06
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:86193302 original size:25 final size:25
Alignment explanation
Indices: 86193274--86193376 Score: 112
Period size: 25 Copynumber: 4.4 Consensus size: 25
86193264 AATCAAAATG
*
86193274 AGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGGTAACAGAATC
86193299 AGAATCAG-A--A--T--CAGAATC
1 AGAATCAGAATCAGGTAACAGAATC
* *
86193317 AGAATCAGAATTAGGTAATAGAATC
1 AGAATCAGAATCAGGTAACAGAATC
* *
86193342 AGAATCAGTATCAAGTAACAGAATC
1 AGAATCAGAATCAGGTAACAGAATC
86193367 AGAATCAGAA
1 AGAATCAGAA
86193377 CCAGAATCAG
Statistics
Matches: 65, Mismatches: 6, Indels: 14
0.76 0.07 0.16
Matches are distributed among these distances:
18 15 0.23
19 1 0.02
20 1 0.02
21 1 0.02
22 1 0.02
23 1 0.02
24 1 0.02
25 44 0.68
ACGTcount: A:0.49, C:0.14, G:0.19, T:0.18
Consensus pattern (25 bp):
AGAATCAGAATCAGGTAACAGAATC
Found at i:86193346 original size:62 final size:63
Alignment explanation
Indices: 86193274--86193438 Score: 241
Period size: 62 Copynumber: 2.7 Consensus size: 63
86193264 AATCAAAATG
* *
86193274 AGAATCAGAATCAGGTGA-C-AG-AATCAGAATCAGAATCAGAATCAGAATCAGAATTAGGTAAT
1 AGAATCAGAATCAGGT-ATCAAGTAA-CAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAAC
86193336 AGAATCAGAATCA-GTATCAAGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAAC
1 AGAATCAGAATCAGGTATCAAGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAAC
* *
86193398 AGAATCAGAATCA-GTATTAGGTAACAGAATCAGAATCAGAA
1 AGAATCAGAATCAGGTATCAAGTAACAGAATCAGAATCAGAA
86193439 TGTGAATGCA
Statistics
Matches: 96, Mismatches: 4, Indels: 6
0.91 0.04 0.06
Matches are distributed among these distances:
60 1 0.01
61 3 0.03
62 90 0.94
63 2 0.02
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (63 bp):
AGAATCAGAATCAGGTATCAAGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAAC
Found at i:86193406 original size:25 final size:25
Alignment explanation
Indices: 86193372--86193439 Score: 118
Period size: 25 Copynumber: 2.7 Consensus size: 25
86193362 GAATCAGAAT
*
86193372 CAGAACCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGAATTAGGTAA
*
86193397 CAGAATCAGAATCAGTATTAGGTAA
1 CAGAATCAGAATCAGAATTAGGTAA
86193422 CAGAATCAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
86193440 GTGAATGCAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATTAGGTAA
Found at i:86193430 original size:19 final size:18
Alignment explanation
Indices: 86193292--86193413 Score: 110
Period size: 19 Copynumber: 6.6 Consensus size: 18
86193282 AATCAGGTGA
86193292 CAGAATCAG-AATCAGAAT
1 CAGAATCAGTAA-CAGAAT
86193310 CAGAATCAG-AATCAGAAT
1 CAGAATCAGTAA-CAGAAT
*
86193328 TAGGTAAT-AG-AATCAGAAT
1 CA-G-AATCAGTAA-CAGAAT
*
86193347 CAGTATCAAGTAACAGAAT
1 CAGAATC-AGTAACAGAAT
86193366 CAGAATCAG-AACCAGAAT
1 CAGAATCAGTAA-CAGAAT
*
86193384 CAGAATTAGGTAACAGAAT
1 CAGAATCA-GTAACAGAAT
86193403 CAGAATCAGTA
1 CAGAATCAGTA
86193414 TTAGGTAACA
Statistics
Matches: 90, Mismatches: 6, Indels: 16
0.80 0.05 0.14
Matches are distributed among these distances:
17 4 0.04
18 38 0.42
19 41 0.46
20 7 0.08
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (18 bp):
CAGAATCAGTAACAGAAT
Found at i:86193884 original size:27 final size:27
Alignment explanation
Indices: 86193854--86194103 Score: 153
Period size: 27 Copynumber: 9.3 Consensus size: 27
86193844 GGGGTAAAAT
* *
86193854 GGTAATTTTACCCCATAAGGGTATCTC
1 GGTAATTCTACCCCATAAGGGTATTTC
*
86193881 GGTAATTCTA--CCTTACAGGAGTATTTC
1 GGTAATTCTACCCCATA-AGG-GTATTTC
* * *
86193908 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCCATAAGGGTATTTC
* * *
86193935 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCCATAAGGGTATTTC
** * * * *
86193962 AATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCCATAAGGGTATTTC
* * * *
86193989 AGTAATTCTATCCTATAGGGGTATTTC
1 GGTAATTCTACCCCATAAGGGTATTTC
* * * * *
86194016 AGTATTTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCCATAAGGGTATTTC
* * * * * *
86194043 GATATTTCTACCCTACAAGGTTATTTT
1 GGTAATTCTACCCCATAAGGGTATTTC
* * * * *
86194070 AGCATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCCATAAGGGTATTTC
86194097 GGTAATT
1 GGTAATT
86194104 TTGTAAATTG
Statistics
Matches: 183, Mismatches: 36, Indels: 8
0.81 0.16 0.04
Matches are distributed among these distances:
25 4 0.02
26 3 0.02
27 171 0.93
28 2 0.01
29 3 0.02
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.38
Consensus pattern (27 bp):
GGTAATTCTACCCCATAAGGGTATTTC
Found at i:86193920 original size:54 final size:54
Alignment explanation
Indices: 86193872--86194103 Score: 286
Period size: 54 Copynumber: 4.3 Consensus size: 54
86193862 TACCCCATAA
* * *
86193872 GGGTATCTCGGTAATTCTACCTTAC-AGGAGTATTTCAGTAATTCTACCCTATAG
1 GGGTATTTCGGTAATTCTACCCTACAAGG-GTATTTCAGTAATTCTACCCTACAG
* *
86193926 GGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAG
** * * * *
86193980 GGGTATTTTAGTAATTCTATCCTATAGGGGTATTTCAGTATTTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAG
* * * * * * *
86194034 GGGTATTTCGATATTTCTACCCTACAAGGTTATTTTAGCATTTCTACCCTACAA
1 GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAG
86194088 GGGTATTTCGGTAATT
1 GGGTATTTCGGTAATT
86194104 TTGTAAATTG
Statistics
Matches: 151, Mismatches: 26, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
54 148 0.98
55 3 0.02
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (54 bp):
GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAG
Found at i:86193979 original size:81 final size:80
Alignment explanation
Indices: 86193883--86194100 Score: 301
Period size: 81 Copynumber: 2.7 Consensus size: 80
86193873 GGTATCTCGG
* *
86193883 TAATTCTACCTTACAGGAGTATTTCAGTAATTCTACCCTATAGGGGTATTTCGGTATTTCTACCC
1 TAATTCTACCCTACAGG-GTATTTTAGTAATTCTACCCTATAGGGGTATTTCGGTATTTCTACCC
86193948 TACAAGGGTATTTCAA
65 TACAAGGGTATTTCAA
* *
86193964 TAATTCTACCCTACAGGGGTATTTTAGTAATTCTATCCTATAGGGGTATTTCAGTATTTCTACCC
1 TAATTCTACCCTACA-GGGTATTTTAGTAATTCTACCCTATAGGGGTATTTCGGTATTTCTACCC
* *
86194029 TACAGGGGTATTTCGA
65 TACAAGGGTATTTCAA
* * * * * *
86194045 TATTTCTACCCTACAAGGTTATTTTAGCATTTCTACCCTACAAGGGTATTTCGGTA
1 TAATTCTACCCTAC-AGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTCGGTA
86194101 ATTTTGTAAA
Statistics
Matches: 121, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
81 118 0.98
82 3 0.02
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.38
Consensus pattern (80 bp):
TAATTCTACCCTACAGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTCGGTATTTCTACCCT
ACAAGGGTATTTCAA
Found at i:86194543 original size:27 final size:27
Alignment explanation
Indices: 86194125--86194536 Score: 419
Period size: 27 Copynumber: 15.3 Consensus size: 27
86194115 GGGTAAAACA
** * *
86194125 GTAATTTTGTAAATCAAGGGTACTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
** * *
86194152 GTAATTTTACAAGTCGAGGGTATTTTC
1 GTAATTTTACAAACCAAGGGTATTTTG
* *** * **
86194179 ATAATTTTACAGGTCGAGGGTATTTCA
1 GTAATTTTACAAACCAAGGGTATTTTG
* * *
86194206 GTAATTTCACAAATCATGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
* * *
86194233 GTAATTTTACAAGCTAGGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
* * * *
86194260 ATAATTTTACAAACTAGGGGGATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
* *
86194287 GTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
* * **
86194314 GTAATTTTATAAACCATGGGTATTTCA
1 GTAATTTTACAAACCAAGGGTATTTTG
*
86194341 GTAATTTTACAAACTAAGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
**
86194368 GTAATTTTGTAAACCAAGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
* *
86194395 GCAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
** *
86194422 GTAATTTTATGAACCAAGGGTATTTTA
1 GTAATTTTACAAACCAAGGGTATTTTG
*
86194449 GTAATTTTACAAACCAGGGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
** *
86194476 GTAATTTTGTAAACCAATGGTATTTTG
1 GTAATTTTACAAACCAAGGGTATTTTG
* *
86194503 GTAATTTTATAAACCAAGGGTATTTTC
1 GTAATTTTACAAACCAAGGGTATTTTG
86194530 GTAATTT
1 GTAATTT
86194537 GGCAAACTAA
Statistics
Matches: 324, Mismatches: 61, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 324 1.00
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAACCAAGGGTATTTTG
Found at i:86199495 original size:30 final size:32
Alignment explanation
Indices: 86199440--86199500 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
86199430 TACTATTTTT
86199440 AGGGATTGATTAGAATATCTTATGGGATATTA
1 AGGGATTGATTAGAATATCTTATGGGATATTA
86199472 AGGGATTGATTA-AGAT-T-TTATGGGATATT
1 AGGGATTGATTAGA-ATATCTTATGGGATATT
86199501 TTAAATTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
30 12 0.43
31 2 0.07
32 14 0.50
ACGTcount: A:0.33, C:0.02, G:0.26, T:0.39
Consensus pattern (32 bp):
AGGGATTGATTAGAATATCTTATGGGATATTA
Found at i:86206078 original size:19 final size:20
Alignment explanation
Indices: 86206040--86206079 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
86206030 TTTTAGGCTA
86206040 ATTTTTTACTTAAAAGAAGT
1 ATTTTTTACTTAAAAGAAGT
86206060 ATTTTTT-CTTTAAAA-AAGT
1 ATTTTTTAC-TTAAAAGAAGT
86206079 A
1 A
86206080 ACTTGTTTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.40, C:0.05, G:0.07, T:0.47
Consensus pattern (20 bp):
ATTTTTTACTTAAAAGAAGT
Found at i:86207212 original size:114 final size:113
Alignment explanation
Indices: 86206899--86207565 Score: 603
Period size: 114 Copynumber: 5.9 Consensus size: 113
86206889 TTACCACAAT
* * * * * * *
86206899 GCGCCGCGAAATCTCTTAACCAAAACGCTGTGTTTTCGTCTTGATGTAT-CTTAAAAGTAGTGGC
1 GCGCCGCAAAATATCTTAACCAAAACGCAGAGTTTTGGTCTTGATGTATAC-TAGAATTAGTGGC
* * * * * *
86206963 GTTTACGCG-AAACGCCATTAAAGGACAGTAATAGCGGCGCTTTCTGGAA
65 GCTTAAG-GTAAACGCCGTTAAAGAATAGTAATAGCGGCGCTTTGTGGAA
* * *
86207012 ACGCCGCAAAATAGCTTAACCAAAACGCAGAG-TTTGGTCTTGAGGTAT-CTTAGAATTAGTGGC
1 GCGCCGCAAAATATCTTAACCAAAACGCAGAGTTTTGGTCTTGATGTATAC-TAGAATTAGTGGC
* * * * * *
86207075 GTTTATAGGAAAACGCCGTTAAAGTACAGTAATAGCGACGCTTTATGGAA
65 GCTTA-AGGTAAACGCCGTTAAAGAATAGTAATAGCGGCGCTTTGTGGAA
* * * * ** * *
86207125 GCGCCGCAAACTATCTTAAGCGAAACACATCGTTTTGGTCTTGATTTATACTAGAACTAGTGGCG
1 GCGCCGCAAAATATCTTAACCAAAACGCAGAGTTTTGGTCTTGATGTATACTAGAATTAGTGGCG
* * * * **
86207190 CATAAGGTCAAACGCCGCTAAAGAATAGTATTAGCGGCGATTTGTAGCTA
66 CTTAAGGT-AAACGCCGTTAAAGAATAGTAATAGCGGCGCTTTGT-GGAA
* * * * * *
86207240 GCGCCACAAAATATCTTAACAAAAACGCAGCGTTTTGATCTTAATGTATA-TAAAATTAGTGGCG
1 GCGCCGCAAAATATCTTAACCAAAACGCAGAGTTTTGGTCTTGATGTATACTAGAATTAGTGGCG
* * *
86207304 CTTACGGTAAACCGCCGCTAAAGAATATTAATAGCGGCGCTTTGTGAGAA
66 CTTAAGGTAAA-CGCCGTTAAAGAATAGTAATAGCGGCGCTTTGTG-GAA
* * * * *
86207354 GCGCCGCAAAATATCTTAACCAAAACGCATAATTTTGGCCTCGATGTATAGTAGAATTAGTGGCG
1 GCGCCGCAAAATATCTTAACCAAAACGCAGAGTTTTGGTCTTGATGTATACTAGAATTAGTGGCG
* * * **
86207419 CTT-A-GTGAAACGCCGTTAAAGCATAGTATTAGCGGCGATTTGTAGCTA
66 CTTAAGGT-AAACGCCGTTAAAGAATAGTAATAGCGGCGCTTTGT-GGAA
* * * * *
86207467 GCGCCGCAAAATATCTTAACAAAAACGCAGTGTTTTGATCTTAATGTATA-TAAAATTAGTGGCG
1 GCGCCGCAAAATATCTTAACCAAAACGCAGAGTTTTGGTCTTGATGTATACTAGAATTAGTGGCG
* * * *
86207531 CTTACGGTAAACCGTCGCTAAAGAATATTAATAGC
66 CTTAAGGTAAA-CGCCGTTAAAGAATAGTAATAGC
86207566 AGCAAAATAT
Statistics
Matches: 450, Mismatches: 90, Indels: 27
0.79 0.16 0.05
Matches are distributed among these distances:
112 49 0.11
113 170 0.38
114 172 0.38
115 59 0.13
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (113 bp):
GCGCCGCAAAATATCTTAACCAAAACGCAGAGTTTTGGTCTTGATGTATACTAGAATTAGTGGCG
CTTAAGGTAAACGCCGTTAAAGAATAGTAATAGCGGCGCTTTGTGGAA
Found at i:86207467 original size:227 final size:226
Alignment explanation
Indices: 86207013--86207796 Score: 827
Period size: 208 Copynumber: 3.5 Consensus size: 226
86207003 TTTCTGGAAA
* * * * * * * * * *
86207013 CGCCGCAAAATAGCTTAACCAAAACGCAGAG-TTTGGTCTTGAGGTATCTTAGAATTAGTGGCGT
1 CGCCACAAAATATCTTAACAAAAACGCAGCGTTTTGATCTTAATGTAT-ATAAAATTAGTGGCGC
* * * * * * *
86207077 TTATAGG-AAAACGCCGTTAAAGTACAGTAATAGCGACGCTTTATGGAAGCGCCGCAAACTATCT
65 TTA-CGGTAAAACGCCGCTAAAGAATAGTAATAGCGGCGCTTTGTGGAAGCGCCGCAAAATATCT
* * * ** * * * * * * *
86207141 TAAGCGAAACACATCGTTTTGGTCTTGATTTATACTAGAACTAGTGGCGCATAAGGTCAAACGCC
129 TAACCAAAACGCATAATTTTGGCCTCGATGTATAGTAGAATTAGTGGCGC-TTA-GTGAAACGCC
* *
86207206 GCTAAAGAATAGTATTAGCGGCGATTTGTAGCTAG
192 GTTAAAGCATAGTATTAGCGGCGATTTGTAGCTAG
86207241 CGCCACAAAATATCTTAACAAAAACGCAGCGTTTTGATCTTAATGTATATAAAATTAGTGGCGCT
1 CGCCACAAAATATCTTAACAAAAACGCAGCGTTTTGATCTTAATGTATATAAAATTAGTGGCGCT
* *
86207306 TACGGTAAACCGCCGCTAAAGAATATTAATAGCGGCGCTTTGTGAGAAGCGCCGCAAAATATCTT
66 TACGGTAAAACGCCGCTAAAGAATAGTAATAGCGGCGCTTTGTG-GAAGCGCCGCAAAATATCTT
86207371 AACCAAAACGCATAATTTTGGCCTCGATGTATAGTAGAATTAGTGGCGCTTAGTGAAACGCCGTT
130 AACCAAAACGCATAATTTTGGCCTCGATGTATAGTAGAATTAGTGGCGCTTAGTGAAACGCCGTT
86207436 AAAGCATAGTATTAGCGGCGATTTGTAGCTAG
195 AAAGCATAGTATTAGCGGCGATTTGTAGCTAG
* *
86207468 CGCCGCAAAATATCTTAACAAAAACGCAGTGTTTTGATCTTAATGTATATAAAATTAGTGGCGCT
1 CGCCACAAAATATCTTAACAAAAACGCAGCGTTTTGATCTTAATGTATATAAAATTAGTGGCGCT
* * *
86207533 TACGGTAAACCGTCGCTAAAGAATATTAATA-----GC--------A-----GCAAAATATCTTA
66 TACGGTAAAACGCCGCTAAAGAATAGTAATAGCGGCGCTTTGTGGAAGCGCCGCAAAATATCTTA
86207580 ACCAAAACGCATAATTTTGGCCTCGATGTATAGTAGAATTAGTGGCGCTTAGTGAAACGCCGTTA
131 ACCAAAACGCATAATTTTGGCCTCGATGTATAGTAGAATTAGTGGCGCTTAGTGAAACGCCGTTA
* * **
86207645 AAGCATAGTATTAGCGGCGCTTGGATA-AAAG
196 AAGCATAGTATTAGCGGCGATTTG-TAGCTAG
* * * * * * * ** * *
86207676 CGCCACCAAGTATCTGAACCAAAACGCATCGTTTTGGTCTTGATGTATACTTGATTTAGTGGCGA
1 CGCCACAAAATATCTTAACAAAAACGCAGCGTTTTGATCTTAATGTATA-TAAAATTAGTGGCGC
* * * * *
86207741 TTTCGGTAAAACGCCGCTAAAGCATAGTATTAGCGGCGATTTGTTGATAGCGCCGC
65 TTACGGTAAAACGCCGCTAAAGAATAGTAATAGCGGCGCTTTGTGGA-AGCGCCGC
86207797 GACTTACCAT
Statistics
Matches: 472, Mismatches: 60, Indels: 48
0.81 0.10 0.08
Matches are distributed among these distances:
208 142 0.30
209 39 0.08
213 1 0.00
214 1 0.00
222 2 0.00
223 1 0.00
227 137 0.29
228 78 0.17
229 71 0.15
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.27
Consensus pattern (226 bp):
CGCCACAAAATATCTTAACAAAAACGCAGCGTTTTGATCTTAATGTATATAAAATTAGTGGCGCT
TACGGTAAAACGCCGCTAAAGAATAGTAATAGCGGCGCTTTGTGGAAGCGCCGCAAAATATCTTA
ACCAAAACGCATAATTTTGGCCTCGATGTATAGTAGAATTAGTGGCGCTTAGTGAAACGCCGTTA
AAGCATAGTATTAGCGGCGATTTGTAGCTAG
Found at i:86208084 original size:14 final size:14
Alignment explanation
Indices: 86208015--86208085 Score: 56
Period size: 14 Copynumber: 5.0 Consensus size: 14
86208005 ACAGTGTAAA
*
86208015 GTTTAAAGTTTAGG
1 GTTTAAGGTTTAGG
* * *
86208029 GTTTACGATGTA-G
1 GTTTAAGGTTTAGG
86208042 GTTTAAGG-TTAGG
1 GTTTAAGGTTTAGG
*
86208055 GTATTAGGGTGTTTAGG
1 GT-TTA-AG-GTTTAGG
86208072 GTTTAAGGTTTAGG
1 GTTTAAGGTTTAGG
86208086 AGTCTGGGGT
Statistics
Matches: 43, Mismatches: 9, Indels: 10
0.69 0.15 0.16
Matches are distributed among these distances:
12 2 0.05
13 10 0.23
14 18 0.42
15 2 0.05
16 4 0.09
17 7 0.16
ACGTcount: A:0.23, C:0.01, G:0.35, T:0.41
Consensus pattern (14 bp):
GTTTAAGGTTTAGG
Found at i:86209253 original size:22 final size:22
Alignment explanation
Indices: 86209227--86209273 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
86209217 ACTATTCCGA
*
86209227 TTAAATATGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
86209249 TTAAATAGGTAAGGCGTTTCTG
1 TTAAATAGGTAAGGCGTTTCTG
86209271 TTA
1 TTA
86209274 TTACAGCCAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (22 bp):
TTAAATAGGTAAGGCGTTTCTG
Found at i:86209655 original size:36 final size:36
Alignment explanation
Indices: 86209613--86209728 Score: 114
Period size: 36 Copynumber: 3.2 Consensus size: 36
86209603 GTTGTTATGT
86209613 TCTGAAATATGCTTTGGATTTGAAATAATTTCTGAG
1 TCTGAAATATGCTTTGGATTTGAAATAATTTCTGAG
* ** * * *
86209649 TCTGAAATA--ATTTGTTTTTG--ATTATGTTGTTATG
1 TCTGAAATATGCTTTGGATTTGAAATAAT-TTCTGA-G
*
86209683 TTCTGAAATATGCTTTGGATTTGAAATAATTTTTGAG
1 -TCTGAAATATGCTTTGGATTTGAAATAATTTCTGAG
86209720 TCTGAAATA
1 TCTGAAATA
86209729 ATTTGTTTTT
Statistics
Matches: 61, Mismatches: 12, Indels: 14
0.70 0.14 0.16
Matches are distributed among these distances:
32 4 0.07
33 4 0.07
34 9 0.15
35 9 0.15
36 18 0.30
37 9 0.15
38 4 0.07
39 4 0.07
ACGTcount: A:0.29, C:0.06, G:0.18, T:0.47
Consensus pattern (36 bp):
TCTGAAATATGCTTTGGATTTGAAATAATTTCTGAG
Found at i:86209679 original size:71 final size:71
Alignment explanation
Indices: 86209580--86209780 Score: 368
Period size: 71 Copynumber: 2.8 Consensus size: 71
86209570 TGAGTGGATT
86209580 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTC
1 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTC
86209645 TGAGTC
66 TGAGTC
*
86209651 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTT
1 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTC
86209716 TGAGTC
66 TGAGTC
*
86209722 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAATTATGCTTTGG-TTCTGAAAT
1 TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATT-TGAAAT
86209781 CTGGATCTGG
Statistics
Matches: 127, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
70 2 0.02
71 125 0.98
ACGTcount: A:0.26, C:0.05, G:0.18, T:0.51
Consensus pattern (71 bp):
TGAAATAATTTGTTTTTGATTATGTTGTTATGTTCTGAAATATGCTTTGGATTTGAAATAATTTC
TGAGTC
Found at i:86209935 original size:14 final size:14
Alignment explanation
Indices: 86209916--86209945 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
86209906 ATAAAAGGTT
86209916 TTTAGTTAATCATC
1 TTTAGTTAATCATC
86209930 TTTAGTTAATCATC
1 TTTAGTTAATCATC
86209944 TT
1 TT
86209946 GCTGTTCGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.13, G:0.07, T:0.53
Consensus pattern (14 bp):
TTTAGTTAATCATC
Found at i:86212586 original size:17 final size:17
Alignment explanation
Indices: 86212564--86212862 Score: 161
Period size: 17 Copynumber: 16.6 Consensus size: 17
86212554 GTTAAATTTA
86212564 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
*
86212581 TTACTAAAATAAATTAC
1 TTACTAAAATACATTAC
*
86212598 TTACTAAAATTTGTTTAAATTTA-
1 TTACTAAAA------TACA-TTAC
86212621 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
86212638 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
* *
86212655 TTACATAAATTTGTTTAAATTTA-
1 TTAC-TAAA-----ATACA-TTAC
*
86212678 TTTCTAAAATACATTAC
1 TTACTAAAATACATTAC
*
86212695 TTACTAAAATTTGTTTAAATTTA-
1 TTACTAAAA------TACA-TTAC
86212718 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
86212735 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
*
86212752 TTACTAAAAT---TT-G
1 TTACTAAAATACATTAC
** *
86212765 TT--T-AAATTTATTAA
1 TTACTAAAATACATTAC
*
86212779 TTACTTAAATACATTAC
1 TTACTAAAATACATTAC
*
86212796 TTACTAAAATTTGTTTAAATTTA-
1 TTACTAAAA------TACA-TTAC
86212819 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
86212836 TTACTAAAATACATTAC
1 TTACTAAAATACATTAC
86212853 TTACTAAAAT
1 TTACTAAAAT
86212863 TTGTTTAAAT
Statistics
Matches: 225, Mismatches: 18, Indels: 78
0.70 0.06 0.24
Matches are distributed among these distances:
10 4 0.02
11 1 0.00
13 4 0.02
14 4 0.02
16 13 0.06
17 136 0.60
18 4 0.02
22 4 0.02
23 43 0.19
24 12 0.05
ACGTcount: A:0.44, C:0.12, G:0.02, T:0.43
Consensus pattern (17 bp):
TTACTAAAATACATTAC
Found at i:86212637 original size:40 final size:40
Alignment explanation
Indices: 86212581--86212744 Score: 157
Period size: 40 Copynumber: 3.7 Consensus size: 40
86212571 AATACATTAC
*
86212581 TTACTAAAATAAATTACTTACTAAAATTTGTTTAAATTTA
1 TTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTA
*
86212621 TTACTAAAATACATTACTTACTAAAATACATTACTTACATAAATTTGTTTAAA
1 TTACTAAAATACATTACTTACTAAAAT---TT-GTT---TAAA----TTT--A
86212674 TTTATTTCTAAAATACATTACTTACTAAAATTTGTTTAAATTTA
1 -TTA---CTAAAATACATTACTTACTAAAATTTGTTTAAATTTA
86212718 TTACTAAAATACATTACTTACTAAAAT
1 TTACTAAAATACATTACTTACTAAAAT
86212745 ACATTACTTA
Statistics
Matches: 104, Mismatches: 3, Indels: 34
0.74 0.02 0.24
Matches are distributed among these distances:
40 50 0.48
43 5 0.05
44 3 0.03
46 3 0.03
47 4 0.04
50 4 0.04
51 3 0.03
53 3 0.03
54 5 0.05
57 24 0.23
ACGTcount: A:0.44, C:0.11, G:0.02, T:0.43
Consensus pattern (40 bp):
TTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTA
Found at i:86212643 original size:57 final size:57
Alignment explanation
Indices: 86212555--86212704 Score: 266
Period size: 57 Copynumber: 2.6 Consensus size: 57
86212545 CGATTGAATG
86212555 TTAAATTTATTACTAAAATACATTACTTACTAAAATAAATTACTTAC-TAAAATTTGT
1 TTAAATTTATTACTAAAATACATTACTTACTAAAATAAATTACTTACAT-AAATTTGT
*
86212612 TTAAATTTATTACTAAAATACATTACTTACTAAAATACATTACTTACATAAATTTGT
1 TTAAATTTATTACTAAAATACATTACTTACTAAAATAAATTACTTACATAAATTTGT
*
86212669 TTAAATTTATTTCTAAAATACATTACTTACTAAAAT
1 TTAAATTTATTACTAAAATACATTACTTACTAAAAT
86212705 TTGTTTAAAT
Statistics
Matches: 90, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
57 89 0.99
58 1 0.01
ACGTcount: A:0.45, C:0.11, G:0.01, T:0.43
Consensus pattern (57 bp):
TTAAATTTATTACTAAAATACATTACTTACTAAAATAAATTACTTACATAAATTTGT
Found at i:86212700 original size:97 final size:97
Alignment explanation
Indices: 86212584--86212895 Score: 518
Period size: 97 Copynumber: 3.2 Consensus size: 97
86212574 ACATTACTTA
*
86212584 CTAAAATAAATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATA
1 CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATA
86212649 CATTACTTAC-ATAAATTTGTTTAAATTTATTT
66 CATTACTTACTA-AAATTTGTTTAAATTTATTT
86212681 CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATA
1 CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATA
86212746 CATTACTTACTAAAATTTGTTTAAATTTATTAATT
66 CATTACTTACTAAAATTTGTTTAAATTTA-T--TT
*
86212781 ACTTAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAAT
1 -CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAAT
*
86212846 ACATTACTTACTAAAATTTGTTTAAATTTATTA
65 ACATTACTTACTAAAATTTGTTTAAATTTATTT
* **
86212879 CTTAAATATGTTACTTA
1 CTAAAATACATTACTTA
86212896 AATTTATTAC
Statistics
Matches: 205, Mismatches: 5, Indels: 10
0.93 0.02 0.05
Matches are distributed among these distances:
97 106 0.52
98 3 0.01
100 3 0.01
101 93 0.45
ACGTcount: A:0.43, C:0.11, G:0.02, T:0.44
Consensus pattern (97 bp):
CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTACTAAAATA
CATTACTTACTAAAATTTGTTTAAATTTATTT
Found at i:86212742 original size:57 final size:60
Alignment explanation
Indices: 86212681--86212805 Score: 211
Period size: 57 Copynumber: 2.1 Consensus size: 60
86212671 AAATTTATTT
86212681 CTAAAATACATTACTTACTAAAATTTGTTTAAA-T-TT-ATTACTAAAATACATTACTTA
1 CTAAAATACATTACTTACTAAAATTTGTTTAAATTATTAATTACTAAAATACATTACTTA
*
86212738 CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTAATTACTTAAATACATTACTTA
1 CTAAAATACATTACTTACTAAAATTTGTTTAAA-TTATTAATTACTAAAATACATTACTTA
86212799 CTAAAAT
1 CTAAAAT
86212806 TTGTTTAAAT
Statistics
Matches: 63, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
57 33 0.52
59 1 0.02
60 2 0.03
61 27 0.43
ACGTcount: A:0.44, C:0.12, G:0.02, T:0.42
Consensus pattern (60 bp):
CTAAAATACATTACTTACTAAAATTTGTTTAAATTATTAATTACTAAAATACATTACTTA
Found at i:86212813 original size:101 final size:100
Alignment explanation
Indices: 86212576--86212878 Score: 533
Period size: 101 Copynumber: 3.0 Consensus size: 100
86212566 ACTAAAATAC
*
86212576 ATTACTTACTAAAATAAATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTA
1 ATTA-TTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTA
86212641 CTAAAATACATTACTTAC-ATAAATTTGTTTAAATTT
65 CTAAAATACATTACTTACTA-AAATTTGTTTAAATTT
86212677 A-T-TT-CTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTAC
1 ATTATTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTAC
86212739 TAAAATACATTACTTACTAAAATTTGTTTAAATTT
66 TAAAATACATTACTTACTAAAATTTGTTTAAATTT
*
86212774 ATTAATTACTTAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTA
1 ATT-ATTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTA
86212839 CTAAAATACATTACTTACTAAAATTTGTTTAAATTT
65 CTAAAATACATTACTTACTAAAATTTGTTTAAATTT
86212875 ATTA
1 ATTA
86212879 CTTAAATATG
Statistics
Matches: 195, Mismatches: 2, Indels: 11
0.94 0.01 0.05
Matches are distributed among these distances:
97 91 0.47
98 4 0.02
100 4 0.02
101 96 0.49
ACGTcount: A:0.43, C:0.11, G:0.02, T:0.44
Consensus pattern (100 bp):
ATTATTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATACATTACTTAC
TAAAATACATTACTTACTAAAATTTGTTTAAATTT
Found at i:86212822 original size:40 final size:43
Alignment explanation
Indices: 86212730--86212845 Score: 184
Period size: 44 Copynumber: 2.7 Consensus size: 43
86212720 ACTAAAATAC
*
86212730 ATTACTTACTAAAATACATTACTTACTAAAATTTGTTTAAATTT
1 ATTAATTACTAAAATACATTACTTACTAAAATTTGTTTAAA-TT
*
86212774 ATTAATTACTTAAATACATTACTTACTAAAATTTGTTTAAA-T
1 ATTAATTACTAAAATACATTACTTACTAAAATTTGTTTAAATT
86212816 -TT-ATTACTAAAATACATTACTTACTAAAAT
1 ATTAATTACTAAAATACATTACTTACTAAAAT
86212846 ACATTACTTA
Statistics
Matches: 69, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
40 27 0.39
41 2 0.03
42 1 0.01
44 39 0.57
ACGTcount: A:0.43, C:0.11, G:0.02, T:0.44
Consensus pattern (43 bp):
ATTAATTACTAAAATACATTACTTACTAAAATTTGTTTAAATT
Found at i:86212849 original size:57 final size:57
Alignment explanation
Indices: 86212774--86212895 Score: 199
Period size: 57 Copynumber: 2.1 Consensus size: 57
86212764 GTTTAAATTT
* *
86212774 ATTAATTACTTAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATAC
1 ATTACTTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATAC
* *
86212831 ATTACTTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTTAAATAT
1 ATTACTTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATAC
*
86212888 GTTACTTA
1 ATTACTTA
86212896 AATTTATTAC
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
57 60 1.00
ACGTcount: A:0.42, C:0.11, G:0.02, T:0.45
Consensus pattern (57 bp):
ATTACTTACTAAAATACATTACTTACTAAAATTTGTTTAAATTTATTACTAAAATAC
Done.