Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 259 of 349
Found at i:86212885 original size:13 final size:13
Alignment explanation
Indices: 86212867--86212937 Score: 106
Period size: 13 Copynumber: 5.5 Consensus size: 13
86212857 TAAAATTTGT
86212867 TTAAATTTATTAC
1 TTAAATTTATTAC
* *
86212880 TTAAATATGTTAC
1 TTAAATTTATTAC
86212893 TTAAATTTATTAC
1 TTAAATTTATTAC
* *
86212906 TTAAATATGTTAC
1 TTAAATTTATTAC
86212919 TTAAATTTATTAC
1 TTAAATTTATTAC
86212932 TTAAAT
1 TTAAAT
86212938 AATTATAAAT
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 50 1.00
ACGTcount: A:0.39, C:0.07, G:0.03, T:0.51
Consensus pattern (13 bp):
TTAAATTTATTAC
Found at i:86212903 original size:26 final size:26
Alignment explanation
Indices: 86212867--86212938 Score: 144
Period size: 26 Copynumber: 2.8 Consensus size: 26
86212857 TAAAATTTGT
86212867 TTAAATTTATTACTTAAATATGTTAC
1 TTAAATTTATTACTTAAATATGTTAC
86212893 TTAAATTTATTACTTAAATATGTTAC
1 TTAAATTTATTACTTAAATATGTTAC
86212919 TTAAATTTATTACTTAAATA
1 TTAAATTTATTACTTAAATA
86212939 ATTATAAATA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.40, C:0.07, G:0.03, T:0.50
Consensus pattern (26 bp):
TTAAATTTATTACTTAAATATGTTAC
Found at i:86213269 original size:74 final size:74
Alignment explanation
Indices: 86213087--86213233 Score: 294
Period size: 74 Copynumber: 2.0 Consensus size: 74
86213077 AATAAAATAT
86213087 AAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAATATTATTAA
1 AAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAATATTATTAA
86213152 TAATTATAA
66 TAATTATAA
86213161 AAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAATATTATTAA
1 AAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAATATTATTAA
86213226 TAATTATA
66 TAATTATA
86213234 TTAGTAATGT
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 73 1.00
ACGTcount: A:0.51, C:0.01, G:0.07, T:0.41
Consensus pattern (74 bp):
AAAAAATATGTGGAATATTAAAATTGACTATTAAAATAAAATGTTATTTTATTAAATATTATTAA
TAATTATAA
Found at i:86213297 original size:19 final size:19
Alignment explanation
Indices: 86213273--86213583 Score: 101
Period size: 19 Copynumber: 16.5 Consensus size: 19
86213263 TATTAAATAA
86213273 TACATAATAACTTACAACT
1 TACATAATAACTTACAACT
*
86213292 TACATAAT-ACATT-TAACT
1 TACATAATAAC-TTACAACT
*
86213310 TACAT--T-ACTTACATA-A
1 TACATAATAACTTACA-ACT
86213326 TACATAATAACTTACAACT
1 TACATAATAACTTACAACT
86213345 TACATAATACATTTAACTTACAACT
1 TAC---ATA-A--TAACTTACAACT
* *
86213370 TACATAATACATTTGACTGACAT
1 TACATAATA-ACTT-AC-AAC-T
*
86213393 AATACAT-TTAACTTACAACT
1 --TACATAATAACTTACAACT
* * *
86213413 TACACAAT-ACATAATAACT
1 TACATAATAAC-TTACAACT
* * *
86213432 TACAACTTACAACTTACATA-A
1 TAC-A-TAATAACTTACA-ACT
86213453 TACATAATAACTTACAACT
1 TACATAATAACTTACAACT
* * *
86213472 TACACAAT-ACATAATAACT
1 TACATAATAAC-TTACAACT
*
86213491 TAC-----AACTTACATA-A
1 TACATAATAACTTACA-ACT
86213505 TACATAATAACTTACAACT
1 TACATAATAACTTACAACT
*
86213524 TACATAAT-ACATT-TAACT
1 TACATAATAAC-TTACAACT
* * *
86213542 TGCA-ACTTAC--ACAA--
1 TACATAATAACTTACAACT
86213556 TACATAATAACTTACAACT
1 TACATAATAACTTACAACT
86213575 TACATAATA
1 TACATAATA
86213584 CATAATAACT
Statistics
Matches: 213, Mismatches: 36, Indels: 86
0.64 0.11 0.26
Matches are distributed among these distances:
14 9 0.04
15 9 0.04
16 11 0.05
17 7 0.03
18 34 0.16
19 85 0.40
20 6 0.03
21 12 0.06
22 13 0.06
23 5 0.02
24 2 0.01
25 20 0.09
ACGTcount: A:0.47, C:0.20, G:0.01, T:0.32
Consensus pattern (19 bp):
TACATAATAACTTACAACT
Found at i:86213311 original size:18 final size:18
Alignment explanation
Indices: 86213288--86213409 Score: 74
Period size: 18 Copynumber: 6.4 Consensus size: 18
86213278 AATAACTTAC
86213288 AACTTACATAATACATTT
1 AACTTACATAATACATTT
*
86213306 AACTTACATTACTTACA--T
1 AACTTACA-TA-ATACATTT
*
86213324 AA--TACATAATA-ACTTAC
1 AACTTACATAATACA-TT-T
86213341 AACTTACATAATACATTTAACTT
1 AACTTACATAATACA--T---TT
86213364 ACAACTTACATAATACATTT
1 --AACTTACATAATACATTT
* *
86213384 GACTGACATAATACATTT
1 AACTTACATAATACATTT
86213402 AACTTACA
1 AACTTACA
86213410 ACTTACACAA
Statistics
Matches: 80, Mismatches: 9, Indels: 30
0.67 0.08 0.25
Matches are distributed among these distances:
13 1 0.01
14 2 0.03
15 2 0.03
16 4 0.05
17 2 0.03
18 33 0.41
19 11 0.14
20 7 0.09
21 1 0.01
23 1 0.01
24 1 0.01
25 15 0.19
ACGTcount: A:0.44, C:0.19, G:0.02, T:0.35
Consensus pattern (18 bp):
AACTTACATAATACATTT
Found at i:86213352 original size:26 final size:26
Alignment explanation
Indices: 86213269--86213681 Score: 530
Period size: 26 Copynumber: 16.1 Consensus size: 26
86213259 ATTTTATTAA
86213269 ATAATACATAATAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
*
86213295 ATAATACAT-TTAACTTACATTACTTAC
1 ATAATACATAATAACTTACA--ACTTAC
86213322 ATAATACATAATAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
*
86213348 ATAATACAT-TTAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
* *
86213373 ATAATAC---AT---TT--GACTGAC
1 ATAATACATAATAACTTACAACTTAC
*
86213391 ATAATACATT-TAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
*
86213416 ACAATACATAATAACTTACAACTTACAACTTAC
1 ATAATAC---ATAA--T--AACTTACAACTTAC
86213449 ATAATACATAATAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
*
86213475 ACAATACATAATAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
86213501 ATAATACATAATAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
* *
86213527 ATAATACAT-TTAACTTGCAACTTAC
1 ATAATACATAATAACTTACAACTTAC
*
86213552 ACAATACATAATAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
86213578 ATAATACATAATAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
*
86213604 ATAATACAT-TTAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
* *
86213629 ACAATACAT-TTAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
86213654 ATAATACATAATAACTTACAACTTAC
1 ATAATACATAATAACTTACAACTTAC
86213680 AT
1 AT
86213682 TTAACTTACA
Statistics
Matches: 343, Mismatches: 23, Indels: 42
0.84 0.06 0.10
Matches are distributed among these distances:
18 12 0.03
20 3 0.01
23 3 0.01
25 111 0.32
26 162 0.47
27 15 0.04
28 12 0.03
30 4 0.01
31 1 0.00
33 20 0.06
ACGTcount: A:0.47, C:0.20, G:0.01, T:0.32
Consensus pattern (26 bp):
ATAATACATAATAACTTACAACTTAC
Found at i:86213689 original size:11 final size:10
Alignment explanation
Indices: 86213673--86213726 Score: 55
Period size: 9 Copynumber: 5.7 Consensus size: 10
86213663 AATAACTTAC
86213673 AACTTACATTT
1 AACTTACA-TT
86213684 AACTTACA-T
1 AACTTACATT
86213693 AA--TACATTT
1 AACTTACA-TT
86213702 AACTTACA-T
1 AACTTACATT
86213711 AACTTACA-T
1 AACTTACATT
86213720 AACTTAC
1 AACTTAC
86213727 CATTGCAATT
Statistics
Matches: 39, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
7 4 0.10
9 23 0.59
11 12 0.31
ACGTcount: A:0.43, C:0.20, G:0.00, T:0.37
Consensus pattern (10 bp):
AACTTACATT
Found at i:86213710 original size:18 final size:18
Alignment explanation
Indices: 86213647--86213712 Score: 89
Period size: 18 Copynumber: 3.6 Consensus size: 18
86213637 TTTAACTTAC
*
86213647 AACTTACATAATACATAAT
1 AACTTACATAATACAT-TT
*
86213666 AACTTACA-ACTTACATTT
1 AACTTACATA-ATACATTT
86213684 AACTTACATAATACATTT
1 AACTTACATAATACATTT
86213702 AACTTACATAA
1 AACTTACATAA
86213713 CTTACATAAC
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
18 28 0.67
19 14 0.33
ACGTcount: A:0.47, C:0.18, G:0.00, T:0.35
Consensus pattern (18 bp):
AACTTACATAATACATTT
Found at i:86213722 original size:18 final size:18
Alignment explanation
Indices: 86213562--86213726 Score: 69
Period size: 18 Copynumber: 9.5 Consensus size: 18
86213552 ACAATACATA
86213562 ATAACTTAC--AACTTAC
1 ATAACTTACATAACTTAC
*
86213578 ATAATACATA-ATAACTTAC
1 AT-A-ACTTACATAACTTAC
86213597 --AACTTACATAA--TAC
1 ATAACTTACATAACTTAC
86213611 ATTTAACTTAC--AACTTAC
1 A--TAACTTACATAACTTAC
*
86213629 ACAA--TACATTTAACTTAC
1 ATAACTTACA--TAACTTAC
*
86213647 --AACTTACATAATACATA-
1 ATAACTTACAT-A-ACTTAC
86213664 ATAACTTAC--AACTTAC
1 ATAACTTACATAACTTAC
86213680 ATTTAACTTACATAA--TAC
1 A--TAACTTACATAACTTAC
86213698 ATTTAACTTACATAACTTAC
1 A--TAACTTACATAACTTAC
86213718 ATAACTTAC
1 ATAACTTAC
86213727 CATTGCAATT
Statistics
Matches: 116, Mismatches: 5, Indels: 54
0.66 0.03 0.31
Matches are distributed among these distances:
14 6 0.05
15 8 0.07
16 16 0.14
17 2 0.02
18 64 0.55
19 14 0.12
20 6 0.05
ACGTcount: A:0.45, C:0.21, G:0.00, T:0.34
Consensus pattern (18 bp):
ATAACTTACATAACTTAC
Found at i:86219196 original size:21 final size:21
Alignment explanation
Indices: 86219170--86219240 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
86219160 CTACAACTTA
* *
86219170 AAGCAGAGGCGGAAGCGAGAG
1 AAGCAGAGGCTGCAGCGAGAG
* * *
86219191 AAGCAGCGACTGCAGCGAGGG
1 AAGCAGAGGCTGCAGCGAGAG
* *
86219212 AAGCGGAGGCTGCAGCAAGAG
1 AAGCAGAGGCTGCAGCGAGAG
86219233 AAGCAGAG
1 AAGCAGAG
86219241 CAGAGCAAAA
Statistics
Matches: 39, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.35, C:0.18, G:0.44, T:0.03
Consensus pattern (21 bp):
AAGCAGAGGCTGCAGCGAGAG
Found at i:86219466 original size:14 final size:14
Alignment explanation
Indices: 86219447--86219480 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
86219437 ATTGCTATTG
86219447 GTTGCTTTTGAAAT
1 GTTGCTTTTGAAAT
86219461 GTTGCTTTTGAAAT
1 GTTGCTTTTGAAAT
*
86219475 TTTGCT
1 GTTGCT
86219481 ACAGGAGGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.18, C:0.09, G:0.21, T:0.53
Consensus pattern (14 bp):
GTTGCTTTTGAAAT
Found at i:86219603 original size:42 final size:42
Alignment explanation
Indices: 86219549--86219754 Score: 367
Period size: 42 Copynumber: 4.9 Consensus size: 42
86219539 TTTTGTATAA
* *
86219549 AAGCGCCACTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCT
86219591 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCT
86219633 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCT
86219675 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCT
* * *
86219717 AAGCGTCGCTAAAGAACATGGTCTTTAACGGCGTTTTT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTT
86219755 GTTTGTAAAC
Statistics
Matches: 159, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 159 1.00
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.33
Consensus pattern (42 bp):
AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCT
Found at i:86226381 original size:32 final size:32
Alignment explanation
Indices: 86226328--86226390 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
86226318 ATTGTACAAT
* * *
86226328 CATTGATCCAATTTAATGAATTATACAATTAC
1 CATTGATCCAATTAAACGAATTATAAAATTAC
*
86226360 CATTGATCGAATTAAACGAATTATAAAATTA
1 CATTGATCCAATTAAACGAATTATAAAATTA
86226391 ATCAATCAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.44, C:0.13, G:0.08, T:0.35
Consensus pattern (32 bp):
CATTGATCCAATTAAACGAATTATAAAATTAC
Found at i:86231922 original size:20 final size:20
Alignment explanation
Indices: 86231897--86231934 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
86231887 CTGTTTAGTG
86231897 AAAATTTTTCT-AAGTTTTGT
1 AAAA-TTTTCTAAAGTTTTGT
86231917 AAAATTTTCTAAAGTTTT
1 AAAATTTTCTAAAGTTTT
86231935 CAATTTAGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.34, C:0.05, G:0.08, T:0.53
Consensus pattern (20 bp):
AAAATTTTCTAAAGTTTTGT
Found at i:86232296 original size:41 final size:41
Alignment explanation
Indices: 86232193--86232307 Score: 164
Period size: 41 Copynumber: 2.9 Consensus size: 41
86232183 ATAAATATTC
* *
86232193 TATTGTTAATAATATT-TTTAAGCTAAAATTTTGGATTTTTG
1 TATTGTTAATAACATTATTTAATCTAAAATTTT-GATTTTTG
*
86232234 TATTGTTAATAAC-TTATTTAATCTAAAATTTTGATTTTTT
1 TATTGTTAATAACATTATTTAATCTAAAATTTTGATTTTTG
*
86232274 TATTGTTAATAACATTATTTAAT-TAAACTTTTGA
1 TATTGTTAATAACATTATTTAATCTAAAATTTTGA
86232308 GGGATAAGTA
Statistics
Matches: 68, Mismatches: 4, Indels: 5
0.88 0.05 0.06
Matches are distributed among these distances:
40 32 0.47
41 36 0.53
ACGTcount: A:0.34, C:0.04, G:0.08, T:0.54
Consensus pattern (41 bp):
TATTGTTAATAACATTATTTAATCTAAAATTTTGATTTTTG
Found at i:86233857 original size:23 final size:23
Alignment explanation
Indices: 86233826--86233897 Score: 60
Period size: 24 Copynumber: 3.1 Consensus size: 23
86233816 TTATAGGATT
86233826 AAATT-AAATTTTATAATTTTTA
1 AAATTAAAATTTTATAATTTTTA
*
86233848 AAATTAAAATATTAT--TTTATTA
1 AAATTAAAATTTTATAATTT-TTA
* * *
86233870 TTAATTTAAAATTTTATAAATTATA
1 --AAATTAAAATTTTATAATTTTTA
86233895 AAA
1 AAA
86233898 AATTTAAATG
Statistics
Matches: 38, Mismatches: 6, Indels: 11
0.69 0.11 0.20
Matches are distributed among these distances:
21 3 0.08
22 8 0.21
23 10 0.26
24 13 0.34
25 2 0.05
26 2 0.05
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (23 bp):
AAATTAAAATTTTATAATTTTTA
Found at i:86239094 original size:41 final size:42
Alignment explanation
Indices: 86239049--86239129 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
86239039 AACTTATATA
*
86239049 AGTTTCAG-TTAACCCTAATGGGTTTT-AGTTCAACTCTTACG
1 AGTTTCAGTTTAACCCTAATAGGTTTTCA-TTCAACTCTTACG
* *
86239090 AGTTTCAGTTTAACCCTACTAGGTTTTCATTCAGCTCTTA
1 AGTTTCAGTTTAACCCTAATAGGTTTTCATTCAACTCTTA
86239130 TGAGCTTCTG
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
41 8 0.23
42 26 0.74
43 1 0.03
ACGTcount: A:0.23, C:0.21, G:0.15, T:0.41
Consensus pattern (42 bp):
AGTTTCAGTTTAACCCTAATAGGTTTTCATTCAACTCTTACG
Found at i:86239115 original size:21 final size:21
Alignment explanation
Indices: 86239050--86239115 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
86239040 ACTTATATAA
* *
86239050 GTTTCAG-TTAACCCTAATGG
1 GTTTCAGTTTAACCCTACTAG
* * * *
86239070 GTTTTAGTTCAACTCTTACGA-
1 GTTTCAGTTTAAC-CCTACTAG
86239091 GTTTCAGTTTAACCCTACTAG
1 GTTTCAGTTTAACCCTACTAG
86239112 GTTT
1 GTTT
86239116 TCATTCAGCT
Statistics
Matches: 33, Mismatches: 10, Indels: 5
0.69 0.21 0.10
Matches are distributed among these distances:
20 11 0.33
21 19 0.58
22 3 0.09
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.41
Consensus pattern (21 bp):
GTTTCAGTTTAACCCTACTAG
Found at i:86252800 original size:70 final size:70
Alignment explanation
Indices: 86252687--86253361 Score: 496
Period size: 70 Copynumber: 9.6 Consensus size: 70
86252677 GACAGGGCAT
** * * * * ** **
86252687 TCTTAAGGCTCACAAGTTCAATATCACAGCCTCTAAAATAGTTAGCACGAGCCTAAACTCCCAAC
1 TCTTAAGGCTCGTAGGTTCAATACCACAACCTCCAAAATAGTTAGCGTGAGCCTACGCTCCCAAC
86252752 TGTAA
66 TGTAA
* * * *
86252757 TCTTAAGGCTCGTAGGTTCAATACC-CAAACCTTCAAAACAGTTACCGCGAGCCTACGCTCCCAA
1 TCTTAAGGCTCGTAGGTTCAATACCAC-AACCTCCAAAATAGTTAGCGTGAGCCTACGCTCCCAA
*
86252821 CTATAA
65 CTGTAA
* * * * * * *
86252827 TCTTAAGGCTTGCAAGTTCAATACCACAACCTCTAAAATAGTTAGCGTGAGCCTACACTCCTAGC
1 TCTTAAGGCTCGTAGGTTCAATACCACAACCTCCAAAATAGTTAGCGTGAGCCTACGCTCCCAAC
*
86252892 TCTAA
66 TGTAA
* * * * * ** * *
86252897 TATTAAGGCTCGCAAGTTCAATACCATAGCCTCCAAAATAGTTAATGTGAGCCTACGCTGCCATC
1 TCTTAAGGCTCGTAGGTTCAATACCACAACCTCCAAAATAGTTAGCGTGAGCCTACGCTCCCAAC
86252962 TGTAA
66 TGTAA
* * * * * * * *
86252967 TCTTAAGGTTCGTAGGCTAAATACAACAACCTCCAAAGTAATTACCGTGAGCCTATGCTCCCAAC
1 TCTTAAGGCTCGTAGGTTCAATACCACAACCTCCAAAATAGTTAGCGTGAGCCTACGCTCCCAAC
86253032 TAG-AA
66 T-GTAA
* **** * * * * *
86253037 TCTTAAGGCTCGTAGGTTTAATATTGTAACCTCTAAAATAGTTAGCGCGAGCTTATGCTCCCAAA
1 TCTTAAGGCTCGTAGGTTCAATACCACAACCTCCAAAATAGTTAGCGTGAGCCTACGCTCCCAAC
*
86253102 TGGAA
66 TGTAA
* * * * * * * *
86253107 TCTTAAGGTTTGCAAGTTCAGTACCGCATCCTCCAAAAGAGTTAGCGTGAGCCTACGCTCCCAAC
1 TCTTAAGGCTCGTAGGTTCAATACCACAACCTCCAAAATAGTTAGCGTGAGCCTACGCTCCCAAC
86253172 TAG-AA
66 T-GTAA
** * ** * * ** * *
86253177 TCTTTTGGCTCGTAGGTTCAATACCACAGCCTTTAAAACAATTAGCGCAAGCTTACGCTCCC-AG
1 TCTTAAGGCTCGTAGGTTCAATACCACAACCTCCAAAATAGTTAGCGTGAGCCTACGCTCCCAAC
*
86253241 TTTGAA
66 TGT-AA
* * * * * * * * * * *
86253247 TCCTAAGTCTCGCAGGTTCAATAACGCAGCCTCCAAAATAGTTAACGCGAGCTTACGCTCTCAGC
1 TCTTAAGGCTCGTAGGTTCAATACCACAACCTCCAAAATAGTTAGCGTGAGCCTACGCTCCCAAC
86253312 TAG-AA
66 T-GTAA
** * *
86253317 TCTTAAGGCTCGTAGGTTCAATACTGCAGCCTCCAAAACAGTTAG
1 TCTTAAGGCTCGTAGGTTCAATACCACAACCTCCAAAATAGTTAG
86253362 GGCAAGCCTA
Statistics
Matches: 471, Mismatches: 125, Indels: 18
0.77 0.20 0.03
Matches are distributed among these distances:
69 4 0.01
70 463 0.98
71 4 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (70 bp):
TCTTAAGGCTCGTAGGTTCAATACCACAACCTCCAAAATAGTTAGCGTGAGCCTACGCTCCCAAC
TGTAA
Found at i:86263109 original size:70 final size:70
Alignment explanation
Indices: 86262955--86263123 Score: 196
Period size: 70 Copynumber: 2.4 Consensus size: 70
86262945 CGTCTTATCA
* * * * *
86262955 CCTACGCTCCCAACTGGAATCTTAAGGCTCACAGGTTCAATACCACAACCTCCAAAATAGTTAGC
1 CCTACACTCCCAGCTGGAATCTTAAGGCTCACAAGTTCAATACCACAACCGCCAAAACAGTTAGC
86263020 ATGAG
66 ATGAG
* * * * *
86263025 CCTACGC-CCTCAGCTAGAATCTTAGGGCTCACAAGTTCAATACCACAGCCGCGAAAACAGTTAG
1 CCTACACTCC-CAGCTGGAATCTTAAGGCTCACAAGTTCAATACCACAACCGCCAAAACAGTTAG
*
86263089 CGTGAG
65 CATGAG
** *
86263095 TTTACACTCCCAGCTGGAATCTAAAGGCT
1 CCTACACTCCCAGCTGGAATCTTAAGGCT
86263124 TATTGGTTTA
Statistics
Matches: 82, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
69 2 0.02
70 78 0.95
71 2 0.02
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.21
Consensus pattern (70 bp):
CCTACACTCCCAGCTGGAATCTTAAGGCTCACAAGTTCAATACCACAACCGCCAAAACAGTTAGC
ATGAG
Found at i:86263947 original size:131 final size:134
Alignment explanation
Indices: 86263745--86264015 Score: 440
Period size: 131 Copynumber: 2.0 Consensus size: 134
86263735 CAAAAGTTTA
*
86263745 AAACATCAACTATTATCAACACAAAAAAAAACTATTTTACCTAGACATGAGAATATTGAAAACCA
1 AAACATCAACTATTATCAACACAAAAAAAAACTATTTTACCTAGACATAAGAATATTGAAAACCA
* * *
86263810 GCCCACACTTTTGTGCTATACTTACACCAAAACAATAATTAATGTTAAAAATAACTTTTTAAAAC
66 ACCCACACTATTGTACTATACTTACACCAAAACAATAATTAATGTTAAAAATAACTTTTTAAAAC
86263875 AGTG
131 AGTG
* * * *
86263879 AAACATCAACTATTATCGACAC-AAATAAAA-TA-TTTAGCTAGACATAAGAATATTGAAAATCA
1 AAACATCAACTATTATCAACACAAAAAAAAACTATTTTACCTAGACATAAGAATATTGAAAACCA
*
86263941 ACCCACACTATTGTACTATACTTACACCAAAACAATAATTAATGTTAAAAATAACTTTTTAAAAT
66 ACCCACACTATTGTACTATACTTACACCAAAACAATAATTAATGTTAAAAATAACTTTTTAAAAC
86264006 AGTG
131 AGTG
86264010 AAACAT
1 AAACAT
86264016 ACAAAACAAC
Statistics
Matches: 128, Mismatches: 9, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
131 98 0.77
132 2 0.02
133 7 0.05
134 21 0.16
ACGTcount: A:0.48, C:0.17, G:0.07, T:0.28
Consensus pattern (134 bp):
AAACATCAACTATTATCAACACAAAAAAAAACTATTTTACCTAGACATAAGAATATTGAAAACCA
ACCCACACTATTGTACTATACTTACACCAAAACAATAATTAATGTTAAAAATAACTTTTTAAAAC
AGTG
Found at i:86267791 original size:21 final size:21
Alignment explanation
Indices: 86267753--86267796 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
86267743 TTTTCTGTTC
* *
86267753 TTTCTTTCTTTTTCTATTTTA
1 TTTCTTTATTTTTCTATTATA
86267774 TTTCTTTATTCTTT-TATTATA
1 TTTCTTTATT-TTTCTATTATA
86267795 TT
1 TT
86267797 ATTATATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 17 0.85
22 3 0.15
ACGTcount: A:0.14, C:0.11, G:0.00, T:0.75
Consensus pattern (21 bp):
TTTCTTTATTTTTCTATTATA
Found at i:86267835 original size:17 final size:17
Alignment explanation
Indices: 86267785--86267840 Score: 51
Period size: 20 Copynumber: 3.1 Consensus size: 17
86267775 TTCTTTATTC
86267785 TTTTATTATATTATTATA
1 TTTTATT-TATTATTATA
86267803 TTTTAGTAATTATTATTAT-
1 TTTTA-T--TTATTATTATA
*
86267822 TTTTATTTACTTATAATA
1 TTTTATTTA-TTATTATA
86267840 T
1 T
86267841 AAGTAAACAT
Statistics
Matches: 32, Mismatches: 1, Indels: 10
0.74 0.02 0.23
Matches are distributed among these distances:
16 3 0.09
17 6 0.19
18 7 0.22
19 6 0.19
20 9 0.28
21 1 0.03
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (17 bp):
TTTTATTTATTATTATA
Found at i:86267915 original size:24 final size:22
Alignment explanation
Indices: 86267853--86267910 Score: 98
Period size: 22 Copynumber: 2.6 Consensus size: 22
86267843 GTAAACATAT
* *
86267853 ATTTATACTACACATGTAATTA
1 ATTTTTACCACACATGTAATTA
86267875 ATTTTTACCACACATGTAATTA
1 ATTTTTACCACACATGTAATTA
86267897 ATTTTTACCACACA
1 ATTTTTACCACACA
86267911 CATGTCACCT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.38, C:0.19, G:0.03, T:0.40
Consensus pattern (22 bp):
ATTTTTACCACACATGTAATTA
Found at i:86268039 original size:19 final size:17
Alignment explanation
Indices: 86268015--86268057 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 17
86268005 CTAAATTAAC
86268015 CTTAATTAAGCAAAATTTA
1 CTTAATTAA--AAAATTTA
86268034 CTTAATT--AAAATTTA
1 CTTAATTAAAAAATTTA
86268049 CTTAATTAA
1 CTTAATTAA
86268058 TATTTAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 15 0.68
19 7 0.32
ACGTcount: A:0.47, C:0.09, G:0.02, T:0.42
Consensus pattern (17 bp):
CTTAATTAAAAAATTTA
Found at i:86268044 original size:15 final size:15
Alignment explanation
Indices: 86268026--86268068 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
86268016 TTAATTAAGC
86268026 AAAATTTACTTAATT
1 AAAATTTACTTAATT
86268041 AAAATTTACTTAATT
1 AAAATTTACTTAATT
* *
86268056 AATATTTAATTAA
1 AAAATTTACTTAA
86268069 CCTTTCACTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.47
Consensus pattern (15 bp):
AAAATTTACTTAATT
Found at i:86270880 original size:64 final size:64
Alignment explanation
Indices: 86270800--86270982 Score: 183
Period size: 67 Copynumber: 2.8 Consensus size: 64
86270790 AGACATTATG
* ** *
86270800 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCAACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCAACAAGATAA
* * * * * *
86270864 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACAAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCAACAAGAT
86270929 AA
63 AA
* * *
86270931 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAG
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAG
86270983 ACGAACTACA
Statistics
Matches: 96, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 25 0.26
66 21 0.22
67 31 0.32
ACGTcount: A:0.30, C:0.16, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCAACAAGATAA
Found at i:86274048 original size:16 final size:16
Alignment explanation
Indices: 86274027--86274062 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
86274017 AAACAAAGAC
86274027 TTAATTTAATTTAGTG
1 TTAATTTAATTTAGTG
*
86274043 TTAATTTAGTTTAGTG
1 TTAATTTAATTTAGTG
86274059 TTAA
1 TTAA
86274063 AACCTACACC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.56
Consensus pattern (16 bp):
TTAATTTAATTTAGTG
Found at i:86280932 original size:6 final size:6
Alignment explanation
Indices: 86280902--86281051 Score: 255
Period size: 6 Copynumber: 24.8 Consensus size: 6
86280892 TTGTTCTGTT
* * * *
86280902 TATCTG TTATTTG TATCTA TATTTG TATTTG TATCTG TATCTG TATCTG
1 TATCTG -TATCTG TATCTG TATCTG TATCTG TATCTG TATCTG TATCTG
86280951 TATCTG TATCTG TATCTG TATCTG TATCTG TATCTG TATCTG TATCTG
1 TATCTG TATCTG TATCTG TATCTG TATCTG TATCTG TATCTG TATCTG
86280999 TATCTG TATCTG TATCTG TATCTG TATCTG TATCTG TATCTG TATCTG
1 TATCTG TATCTG TATCTG TATCTG TATCTG TATCTG TATCTG TATCTG
86281047 TATCT
1 TATCT
86281052 ATAAAGGACT
Statistics
Matches: 137, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
6 132 0.96
7 5 0.04
ACGTcount: A:0.17, C:0.15, G:0.15, T:0.53
Consensus pattern (6 bp):
TATCTG
Found at i:86283257 original size:6 final size:6
Alignment explanation
Indices: 86283246--86283273 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
86283236 ATACAAGATG
86283246 TAATTT TAATTT TAATTT TAATTT TAAT
1 TAATTT TAATTT TAATTT TAATTT TAAT
86283274 AAAAATGGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (6 bp):
TAATTT
Found at i:86284398 original size:28 final size:29
Alignment explanation
Indices: 86284345--86284402 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
86284335 TTTATGTAAG
86284345 AATAAAAATATTTCAAATACCTTTTTTTA
1 AATAAAAATATTTCAAATACCTTTTTTTA
*
86284374 AATAAAAATATTTCAAATA-TTTTTTTTA
1 AATAAAAATATTTCAAATACCTTTTTTTA
86284402 A
1 A
86284403 TTGTTTAGAT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 9 0.32
29 19 0.68
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (29 bp):
AATAAAAATATTTCAAATACCTTTTTTTA
Found at i:86291325 original size:112 final size:111
Alignment explanation
Indices: 86291174--86291417 Score: 249
Period size: 114 Copynumber: 2.2 Consensus size: 111
86291164 TAAAGCTAAT
* *
86291174 AAAACACAACAACAAAAATAACATTTCAAGTAAATACGAAAAATTA-ATATAAGATACCACAAAA
1 AAAACACAAC-A-AAAAATAACATTTCAAGTAAATACGAAAAA-AAGATATAAGATACAACAAAA
* * * *
86291238 ATATTAATAAAACAAATTAATCATACCTTCAATACAAATATAAAAATAAA
63 ACATTAATAAAACAAACTAACCATACATTCAATACAAATATAAAAAT-AA
* *** *
86291288 AAAACACAACAAAAAATATCATTTCCCTTGAAA-ACGAAAAAAACGGATATAAGATACAACAATA
1 AAAACACAACAAAAAATAACATTTCAAGT-AAATACGAAAAAAA--GATATAAGATACAACAAAA
* * * **
86291352 ACATTAATAAAATAAACTAACCATACATTTAATACAAATTTAAATCTAA
63 ACATTAATAAAACAAACTAACCATACATTCAATACAAATATAAAAATAA
**
86291401 AAAACATTACAAAAAAT
1 AAAACACAACAAAAAAT
86291418 TATCTTTTAA
Statistics
Matches: 108, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
111 1 0.01
112 22 0.20
113 21 0.19
114 64 0.59
ACGTcount: A:0.60, C:0.15, G:0.03, T:0.22
Consensus pattern (111 bp):
AAAACACAACAAAAAATAACATTTCAAGTAAATACGAAAAAAAGATATAAGATACAACAAAAACA
TTAATAAAACAAACTAACCATACATTCAATACAAATATAAAAATAA
Found at i:86297691 original size:16 final size:16
Alignment explanation
Indices: 86297665--86297718 Score: 63
Period size: 16 Copynumber: 3.4 Consensus size: 16
86297655 TTTGGTTTGT
*
86297665 TGTAATGGAATAGAAC
1 TGTAATAGAATAGAAC
* *
86297681 TGTAGTAGAATAGAAT
1 TGTAATAGAATAGAAC
* *
86297697 TGTAATGGAATAGAGC
1 TGTAATAGAATAGAAC
86297713 TGTAAT
1 TGTAAT
86297719 CAATAATTCA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.41, C:0.04, G:0.26, T:0.30
Consensus pattern (16 bp):
TGTAATAGAATAGAAC
Found at i:86301730 original size:46 final size:46
Alignment explanation
Indices: 86301630--86301799 Score: 197
Period size: 46 Copynumber: 3.7 Consensus size: 46
86301620 GGGTAGGATA
* *
86301630 CCGATGTCATGTCCCAGACATGGTCTTACATTGGC-TCATCTCGTAG
1 CCGATGTCATGTCCCAGACATGGTCTTACACTGGCTTCATCTC-AAG
*
86301676 CCGATG-CATGTCCCAGACAT-ATCTTACACTGGCTTACATCTCAAGG
1 CCGATGTCATGTCCCAGACATGGTCTTACACTGGCTT-CATCTCAA-G
* * * *
86301722 TCGATG-CATGTCTCAGACAT-GTCTTACACTAGCTCTCGTCTCAATG
1 CCGATGTCATGTCCCAGACATGGTCTTACACTGGCT-TCATCTCAA-G
86301768 CCGATGTCATGTCCCAGACATGGTCTTACACT
1 CCGATGTCATGTCCCAGACATGGTCTTACACT
86301800 AGCTCGCAAT
Statistics
Matches: 107, Mismatches: 11, Indels: 10
0.84 0.09 0.08
Matches are distributed among these distances:
44 11 0.10
45 16 0.15
46 56 0.52
47 14 0.13
48 10 0.09
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
CCGATGTCATGTCCCAGACATGGTCTTACACTGGCTTCATCTCAAG
Found at i:86303393 original size:14 final size:15
Alignment explanation
Indices: 86303376--86303404 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
86303366 GAGTATGGTA
86303376 AAATA-TTAAAAAAT
1 AAATATTTAAAAAAT
86303390 AAATATTTAAAAAAT
1 AAATATTTAAAAAAT
86303405 TACTAATAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAATATTTAAAAAAT
Found at i:86306697 original size:28 final size:27
Alignment explanation
Indices: 86306664--86306716 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
86306654 TTAGAATACT
*
86306664 TTAGTTTACTAAAATTACCGAAATACGC
1 TTAGTTT-CTAAAAATACCGAAATACGC
* *
86306692 TTAGTTTGTAAAAATACTGAAATAC
1 TTAGTTTCTAAAAATACCGAAATAC
86306717 CCTCGATTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (27 bp):
TTAGTTTCTAAAAATACCGAAATACGC
Found at i:86306703 original size:27 final size:27
Alignment explanation
Indices: 86306673--86306790 Score: 105
Period size: 27 Copynumber: 4.4 Consensus size: 27
86306663 TTTAGTTTAC
86306673 TAAAATTACCGAAATACGCTTAG-TTTG
1 TAAAATTACCGAAATAC-CTTAGATTTG
* * * *
86306700 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCTTAGATTTG
* * *
86306727 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACCGAAATACCTTAGATTTG
*** *
86306754 TAAAATTACC-AAAGTACCACCGATTTA
1 TAAAATTACCGAAA-TACCTTAGATTTG
86306781 TAAAATTACC
1 TAAAATTACC
86306791 ATTTTACCCC
Statistics
Matches: 77, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 6 0.08
27 71 0.92
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.31
Consensus pattern (27 bp):
TAAAATTACCGAAATACCTTAGATTTG
Found at i:86306755 original size:54 final size:54
Alignment explanation
Indices: 86306668--86306790 Score: 135
Period size: 54 Copynumber: 2.3 Consensus size: 54
86306658 AATACTTTAG
* *
86306668 TTTACTAAAATTACCGAAATACGCTTAGTTTGTAAAAATACTGAAA-TACC-CTCGA
1 TTTA-TAAAATTACCGAAATACGCTTAGCTTGTAAAAATAC-CAAAGTACCAC-CGA
* * * *
86306723 TTTGTAAAATTACTGAAATAC-CTTCGACTTGTAAAATTACCAAAGTACCACCGA
1 TTTATAAAATTACCGAAATACGCTTAG-CTTGTAAAAATACCAAAGTACCACCGA
86306777 TTTATAAAATTACC
1 TTTATAAAATTACC
86306791 ATTTTACCCC
Statistics
Matches: 57, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
53 7 0.12
54 46 0.81
55 4 0.07
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.32
Consensus pattern (54 bp):
TTTATAAAATTACCGAAATACGCTTAGCTTGTAAAAATACCAAAGTACCACCGA
Found at i:86306791 original size:27 final size:27
Alignment explanation
Indices: 86306754--86306818 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
86306744 CTTCGACTTG
86306754 TAAAATTACCAAAGTACCACCGATTTA
1 TAAAATTACCAAAGTACCACCGATTTA
*** *
86306781 TAAAATTACCATTTTACCCCCGATTTA
1 TAAAATTACCAAAGTACCACCGATTTA
* *
86306808 CATAATTACCA
1 TAAAATTACCA
86306819 TTTTACCCCC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.25, G:0.05, T:0.31
Consensus pattern (27 bp):
TAAAATTACCAAAGTACCACCGATTTA
Found at i:86306835 original size:27 final size:27
Alignment explanation
Indices: 86306768--86306832 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 27
86306758 ATTACCAAAG
* * *
86306768 TACCACCGATTTATAAAATTACCATTT
1 TACCCCCGATTTACATAATTACCATTT
86306795 TACCCCCGATTTACATAATTACCATTT
1 TACCCCCGATTTACATAATTACCATTT
86306822 TACCCCC-ATTT
1 TACCCCCGATTT
86306833 TACCCTCGAC
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
26 4 0.11
27 31 0.89
ACGTcount: A:0.31, C:0.29, G:0.03, T:0.37
Consensus pattern (27 bp):
TACCCCCGATTTACATAATTACCATTT
Found at i:86306873 original size:38 final size:38
Alignment explanation
Indices: 86306789--86306864 Score: 116
Period size: 38 Copynumber: 2.0 Consensus size: 38
86306779 TATAAAATTA
* *
86306789 CCATTTTACCCCCGATTTACATAATTACCATTTTACCC
1 CCATTTTACCCCCGACTTACAGAATTACCATTTTACCC
* *
86306827 CCATTTTACCCTCGACTTACAGAATTACCGTTTTACCC
1 CCATTTTACCCCCGACTTACAGAATTACCATTTTACCC
86306865 TCGATTTACA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.25, C:0.34, G:0.05, T:0.36
Consensus pattern (38 bp):
CCATTTTACCCCCGACTTACAGAATTACCATTTTACCC
Found at i:86306963 original size:27 final size:27
Alignment explanation
Indices: 86306829--86306964 Score: 175
Period size: 27 Copynumber: 5.0 Consensus size: 27
86306819 TTTTACCCCC
* *
86306829 ATTTTACCCTCGACTTACAGAATTACC
1 ATTTTACCCTCGATTTACAGAATTACT
*
86306856 GTTTTACCCTCGATTTACAGAATTA-T
1 ATTTTACCCTCGATTTACAGAATTACT
* * *
86306882 CGTTTTACCGTCGATTTATAGAATTACT
1 -ATTTTACCCTCGATTTACAGAATTACT
* *
86306910 ATTTTACCCTTGATTTACAGGATTACT
1 ATTTTACCCTCGATTTACAGAATTACT
*
86306937 ATTTTACCCTCGATTTACAAAATTACT
1 ATTTTACCCTCGATTTACAGAATTACT
86306964 A
1 A
86306965 AAATACCATT
Statistics
Matches: 94, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
27 93 0.99
28 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.10, T:0.40
Consensus pattern (27 bp):
ATTTTACCCTCGATTTACAGAATTACT
Found at i:86306971 original size:27 final size:27
Alignment explanation
Indices: 86306887--86306999 Score: 64
Period size: 27 Copynumber: 4.2 Consensus size: 27
86306877 ATTATCGTTT
* * * ***
86306887 TACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* ** ***
86306914 TACCCTTGATTTACAGGATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
86306941 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* * * ** *
86306968 TACCATTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
86306995 TACCC
1 TACCC
86307000 CTAGTTTGTA
Statistics
Matches: 69, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 69 1.00
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:86307006 original size:27 final size:27
Alignment explanation
Indices: 86306955--86307010 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
86306945 CTCGATTTAC
* * *
86306955 AAAATTACTAAAATACCATTGGTTTGT
1 AAAATTACCAAAATACCACTAGTTTGT
*
86306982 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCACTAGTTTGT
86307009 AA
1 AA
86307011 TGACTAAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAAATACCACTAGTTTGT
Found at i:86307065 original size:27 final size:26
Alignment explanation
Indices: 86307029--86307094 Score: 82
Period size: 25 Copynumber: 2.5 Consensus size: 26
86307019 ATGCCCCTAT
86307029 TAGGGTAAAGTGACCGTAA-AGCCCCTG
1 TAGGGTAAA-TGACCGTAATA-CCCCTG
86307056 TAGGGTAAA-GACCGTAATACCCCTG
1 TAGGGTAAATGACCGTAATACCCCTG
*
86307081 TATGGTAAAATGAC
1 TAGGGT-AAATGAC
86307095 GAATATGCCC
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
25 19 0.54
26 4 0.11
27 12 0.34
ACGTcount: A:0.33, C:0.20, G:0.26, T:0.21
Consensus pattern (26 bp):
TAGGGTAAATGACCGTAATACCCCTG
Found at i:86308283 original size:25 final size:25
Alignment explanation
Indices: 86308254--86308301 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
86308244 TTATAATATG
* * *
86308254 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
86308279 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
86308302 GTTTATACTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:86308448 original size:20 final size:20
Alignment explanation
Indices: 86308338--86308440 Score: 197
Period size: 20 Copynumber: 5.2 Consensus size: 20
86308328 ATTTTGATAA
86308338 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
86308358 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
86308378 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
86308398 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
86308418 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
86308438 ACA
1 ACA
86308441 CGAGATGTTC
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 81 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:86308553 original size:25 final size:24
Alignment explanation
Indices: 86308495--86308640 Score: 181
Period size: 25 Copynumber: 6.0 Consensus size: 24
86308485 AGGAAGTGCA
86308495 AAAGGGCTTATGCCCCAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
*
86308518 AAAGGGCTTATGCCCTAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
*
86308543 GAAGGGCTTATGCCCCAGTTATAAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
*
86308568 AAAGGGCTTATGCCCCAGTTATAA
1 AAAGGGCTTATGCCCCAGTTATAT
*
86308592 AAAGGGCTTTTGCCCCAGTTACTA-
1 AAAGGGCTTATGCCCCAGTTA-TAT
*
86308616 AAAGAGGC-TAGGCCTCCAGTTATAT
1 AAAG-GGCTTATGCC-CCAGTTATAT
86308641 GATAAAGCAG
Statistics
Matches: 108, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
23 21 0.19
24 31 0.29
25 56 0.52
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (24 bp):
AAAGGGCTTATGCCCCAGTTATAT
Found at i:86308588 original size:50 final size:47
Alignment explanation
Indices: 86308494--86308639 Score: 177
Period size: 49 Copynumber: 3.0 Consensus size: 47
86308484 GAGGAAGTGC
*
86308494 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCTAGTTATGA
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT-A
**
86308542 TGAAGGGCTTATGCCCCAGTTATAATAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTAT--TAAAGGGCTTATGCCCCAGTTATA
* * *
86308591 AAAAGGGCTTTTGCCCCAGTTACTAAAAGAGGC-TAGGCCTCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTA-TTAAAG-GGCTTATGCC-CCAGTTATA
86308640 TGATAAAGCA
Statistics
Matches: 85, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
48 30 0.35
49 32 0.38
50 23 0.27
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATA
Found at i:86308635 original size:74 final size:73
Alignment explanation
Indices: 86308495--86308639 Score: 188
Period size: 74 Copynumber: 2.0 Consensus size: 73
86308485 AGGAAGTGCA
* * * *
86308495 AAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCTAGTTATGATGAAGGGCTTATGCCCCA
1 AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTAGGCCCCA
86308560 GTTATAAT
66 GTTATAAT
*
86308568 AAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAGTTACT-A-AAAGAGGC-TAGGCC
1 AAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTA-TGATAAAG-GGCTTAGGCC
86308630 TCCAGTTATA
63 -CCAGTTATA
86308640 TGATAAAGCA
Statistics
Matches: 63, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
73 30 0.48
74 32 0.51
75 1 0.02
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (73 bp):
AAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTAGGCCCCA
GTTATAAT
Found at i:86308860 original size:31 final size:31
Alignment explanation
Indices: 86308825--86308888 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
86308815 CGTTTACCGT
*
86308825 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
86308856 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
86308887 AA
1 AA
86308889 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:86310125 original size:91 final size:91
Alignment explanation
Indices: 86310007--86310173 Score: 275
Period size: 91 Copynumber: 1.8 Consensus size: 91
86309997 CTTGAAAGGT
*
86310007 TTTAGTTACTAGAAAACAACTCACAAGCAAAGCTCTTAT-GTTCAAACTTGGATCATAAATACTC
1 TTTAGTTACTAGAAAACAACTCACAAGCAAAGCTCTTATCG-TCAAACTTGGACCATAAATACTC
86310071 ATTCCACTAGTTCATTAGGGTTTAGGG
65 ATTCCACTAGTTCATTAGGGTTTAGGG
* *
86310098 TTTAGTTACTAGAGAAA-AACTCACAAGCAAAGCTCTTATCGTGAAACTTGGACCCTAAATACTC
1 TTTAGTTACTAGA-AAACAACTCACAAGCAAAGCTCTTATCGTCAAACTTGGACCATAAATACTC
86310162 ATTCCACTAGTT
65 ATTCCACTAGTT
86310174 TCCTGCAGCC
Statistics
Matches: 71, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
91 67 0.94
92 4 0.06
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.31
Consensus pattern (91 bp):
TTTAGTTACTAGAAAACAACTCACAAGCAAAGCTCTTATCGTCAAACTTGGACCATAAATACTCA
TTCCACTAGTTCATTAGGGTTTAGGG
Found at i:86310789 original size:37 final size:37
Alignment explanation
Indices: 86310748--86310823 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
86310738 AAGAAAAAAA
*
86310748 GAAAGCGTAGAGATGGAAATGAAAGGAAGTTACCAGT
1 GAAAGCGTAGAGATGGAAAGGAAAGGAAGTTACCAGT
86310785 GAAAGCGTAGAGATGGAAAGGAAAGGAAGTTACCAGT
1 GAAAGCGTAGAGATGGAAAGGAAAGGAAGTTACCAGT
86310822 GA
1 GA
86310824 GACCGAAGGA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.43, C:0.08, G:0.34, T:0.14
Consensus pattern (37 bp):
GAAAGCGTAGAGATGGAAAGGAAAGGAAGTTACCAGT
Found at i:86311273 original size:18 final size:18
Alignment explanation
Indices: 86311241--86311285 Score: 65
Period size: 17 Copynumber: 2.5 Consensus size: 18
86311231 GTACATAGGT
86311241 ATGCGAACTCTTATATGCA
1 ATGCGAACTCTTATATG-A
86311260 ATGCGAAC-CTTATATGA
1 ATGCGAACTCTTATATGA
*
86311277 ATACGAACT
1 ATGCGAACT
86311286 GAATGCGAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 8 0.33
18 8 0.33
19 8 0.33
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.29
Consensus pattern (18 bp):
ATGCGAACTCTTATATGA
Found at i:86313050 original size:13 final size:13
Alignment explanation
Indices: 86313026--86313061 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
86313016 TGGAAATTAG
*
86313026 AAATATTGAAATT
1 AAATATTAAAATT
*
86313039 AAATTTTAAAATT
1 AAATATTAAAATT
86313052 AAATATTAAA
1 AAATATTAAA
86313062 TTTCGTTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (13 bp):
AAATATTAAAATT
Found at i:86314375 original size:19 final size:19
Alignment explanation
Indices: 86314339--86314391 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
86314329 ATTTTTCTCA
*
86314339 AAAAAATAGGAAAAATTATC
1 AAAAAATA-TAAAAATTATC
* *
86314359 AAAAAATATAAATATTATT
1 AAAAAATATAAAAATTATC
*
86314378 AAAAATTATAAAAA
1 AAAAAATATAAAAA
86314392 AATTATAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 20 0.71
20 8 0.29
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.26
Consensus pattern (19 bp):
AAAAAATATAAAAATTATC
Found at i:86314391 original size:9 final size:9
Alignment explanation
Indices: 86314349--86314448 Score: 60
Period size: 10 Copynumber: 10.4 Consensus size: 9
86314339 AAAAAATAGG
86314349 AAAAATTAT
1 AAAAATTAT
*
86314358 CAAAAAATAT
1 -AAAAATTAT
*
86314368 AAATATTATT
1 AAAAATTA-T
86314378 AAAAATTAT
1 AAAAATTAT
86314387 AAAAAAATTAT
1 --AAAAATTAT
*
86314398 AAAAATAAT
1 AAAAATTAT
*
86314407 ATTAAATCTA-
1 A-AAAAT-TAT
*
86314417 ATAAATTATT
1 AAAAATTA-T
*
86314427 AAAAATAAT
1 AAAAATTAT
86314436 -AAAATTAAT
1 AAAAATT-AT
86314445 AAAA
1 AAAA
86314449 CATGTTTTAA
Statistics
Matches: 71, Mismatches: 10, Indels: 18
0.72 0.10 0.18
Matches are distributed among these distances:
8 7 0.10
9 24 0.34
10 30 0.42
11 10 0.14
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (9 bp):
AAAAATTAT
Found at i:86314439 original size:8 final size:9
Alignment explanation
Indices: 86314390--86314448 Score: 50
Period size: 9 Copynumber: 6.4 Consensus size: 9
86314380 AAATTATAAA
86314390 AAAATT-AT
1 AAAATTAAT
*
86314398 AAAAATAAT
1 AAAATTAAT
86314407 ATTAAATCTAAT
1 A--AAAT-TAAT
*
86314419 -AAATTATT
1 AAAATTAAT
*
86314427 AAAAATAAT
1 AAAATTAAT
86314436 AAAATTAAT
1 AAAATTAAT
86314445 AAAA
1 AAAA
86314449 CATGTTTTAA
Statistics
Matches: 40, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
8 8 0.20
9 25 0.62
11 3 0.08
12 4 0.10
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (9 bp):
AAAATTAAT
Found at i:86314444 original size:26 final size:27
Alignment explanation
Indices: 86314391--86314447 Score: 82
Period size: 29 Copynumber: 2.1 Consensus size: 27
86314381 AATTATAAAA
86314391 AAATTATAAAAATAATATTAAATCTAAT
1 AAATTATAAAAATAATA-TAAATCTAAT
86314419 AAATTATTAAAAATAATA-AAAT-TAAT
1 AAATTA-TAAAAATAATATAAATCTAAT
86314445 AAA
1 AAA
86314448 ACATGTTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
26 7 0.25
27 4 0.14
28 6 0.21
29 11 0.39
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (27 bp):
AAATTATAAAAATAATATAAATCTAAT
Found at i:86314947 original size:12 final size:12
Alignment explanation
Indices: 86314930--86314954 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
86314920 GTTCAAGTTT
86314930 TTATAATTTTTA
1 TTATAATTTTTA
86314942 TTATAATTTTTA
1 TTATAATTTTTA
86314954 T
1 T
86314955 AAGTTTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TTATAATTTTTA
Found at i:86315128 original size:29 final size:29
Alignment explanation
Indices: 86315077--86315133 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
86315067 TTATTATTTT
* *
86315077 TTATAACTTTGTTATAATATTTATAAGTC
1 TTATAAATTTGTTATAATATTTACAAGTC
*
86315106 TTATAAATTTTTTATAAGT-TTTACAAGT
1 TTATAAATTTGTTATAA-TATTTACAAGT
86315134 TCATATAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 23 0.96
30 1 0.04
ACGTcount: A:0.35, C:0.05, G:0.07, T:0.53
Consensus pattern (29 bp):
TTATAAATTTGTTATAATATTTACAAGTC
Found at i:86318000 original size:21 final size:23
Alignment explanation
Indices: 86317951--86318016 Score: 77
Period size: 21 Copynumber: 3.0 Consensus size: 23
86317941 AGGAAATAAC
*
86317951 ATGTGAACACTGTAGGAATTGTA
1 ATGTGAACACTGTAGGAATTATA
86317974 ATGTGAACAC-GTA-GAAGTTAT-
1 ATGTGAACACTGTAGGAA-TTATA
*
86317995 ATGTGAAC-CTATAGGAATTATA
1 ATGTGAACACTGTAGGAATTATA
86318017 TGCGGACCTT
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
20 1 0.03
21 17 0.46
22 9 0.24
23 10 0.27
ACGTcount: A:0.38, C:0.09, G:0.23, T:0.30
Consensus pattern (23 bp):
ATGTGAACACTGTAGGAATTATA
Found at i:86318017 original size:21 final size:22
Alignment explanation
Indices: 86317937--86318018 Score: 71
Period size: 21 Copynumber: 3.7 Consensus size: 22
86317927 TTATGCAAAC
* *
86317937 CTATAGGAAATAACATGTGAACA
1 CTATAGG-AATTATATGTGAACA
* *
86317960 CTGTAGGAATTGTAATGTGAACA
1 CTATAGGAATTAT-ATGTGAACA
*
86317983 C-GTA-GAAGTTATATGTGAAC-
1 CTATAGGAA-TTATATGTGAACA
86318003 CTATAGGAATTATATG
1 CTATAGGAATTATATG
86318019 CGGACCTTAA
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
20 1 0.02
21 20 0.41
22 12 0.24
23 16 0.33
ACGTcount: A:0.39, C:0.10, G:0.22, T:0.29
Consensus pattern (22 bp):
CTATAGGAATTATATGTGAACA
Found at i:86323028 original size:19 final size:19
Alignment explanation
Indices: 86322958--86323047 Score: 152
Period size: 18 Copynumber: 4.9 Consensus size: 19
86322948 AATCATATCT
86322958 TCTAAGATTGCATAT-ATA
1 TCTAAGATTGCATATCATA
86322976 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
86322994 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
86323011 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
86323030 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
86323048 TGAAGATTAT
Statistics
Matches: 68, Mismatches: 0, Indels: 7
0.91 0.00 0.09
Matches are distributed among these distances:
17 18 0.26
18 25 0.37
19 25 0.37
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:86323055 original size:17 final size:19
Alignment explanation
Indices: 86322961--86323055 Score: 112
Period size: 19 Copynumber: 5.3 Consensus size: 19
86322951 CATATCTTCT
*
86322961 AAGATTGCATAT-ATATCT
1 AAGATTGCATATCATATCG
*
86322979 AAGATTGCA-ATCATATCT
1 AAGATTGCATATCATATCG
*
86322997 AAGATTG--TATCATATCT
1 AAGATTGCATATCATATCG
*
86323014 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCG
86323033 AAGATTGCATATCAT-T-G
1 AAGATTGCATATCATATCG
86323050 AAGATT
1 AAGATT
86323056 ATATTTCCAT
Statistics
Matches: 72, Mismatches: 1, Indels: 9
0.88 0.01 0.11
Matches are distributed among these distances:
17 24 0.33
18 23 0.32
19 25 0.35
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.37
Consensus pattern (19 bp):
AAGATTGCATATCATATCG
Found at i:86323454 original size:45 final size:45
Alignment explanation
Indices: 86323399--86323671 Score: 284
Period size: 45 Copynumber: 6.1 Consensus size: 45
86323389 GGAAGGCGAT
* * *
86323399 ATCTGCTATCTTTGATCTGTTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAA
*
86323444 ATCTGTTATCTTTGATCTGCTCCCCGTCTAATATAGAGATGCCAA
1 ATCTGTTATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* ** * *
86323489 ATCTGCT-TCTTCAATCTACTCCTCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* *
86323533 ATCTGTTATCTCTGATTTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * * * * * *
86323578 ATCTGTCATCTTGGATCTGCT--TCGATGTAACACATGA-AGGTCAG
1 ATCTGTTATCTTTGATCTGCTCCCCG-TCTAATACA-GAGATGCCAA
* * *
86323622 ATCTGCTATGTCTTCGATCTGCTCCCTGTCTAATACAGAGATGCCAA
1 ATCTG-T-TATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAA
86323669 ATC
1 ATC
86323672 ATCTTGGATC
Statistics
Matches: 183, Mismatches: 37, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
43 2 0.01
44 54 0.30
45 98 0.54
46 14 0.08
47 14 0.08
48 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.33
Consensus pattern (45 bp):
ATCTGTTATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAA
Found at i:86323626 original size:89 final size:79
Alignment explanation
Indices: 86323533--86323860 Score: 345
Period size: 78 Copynumber: 4.1 Consensus size: 79
86323523 GAGATGCCAA
*
86323533 ATCTGTTATCTCTGATTTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCTTGGATCTGC
1 ATCTGTTATCTCTGATCTGCTCCCCGTCTAATACAGAGATGCCAAA----TCATCTTGGATCTGC
86323598 TTCGATGTAACACATGAAGGTCAG
62 TTC--T-T--CA-ATGAAGGTCAG
* * *
86323622 ATCTGCTATGTCTTCGATCTGCTCCCTGTCTAATACAGAGATGCCAAATCATCTTGGATCTG---
1 ATCTGTTATCTC-T-GATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
*
86323684 CTTCAATAAAGGTCCA-
64 CTTCAATGAAGGT-CAG
* *
86323700 ATCTATTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTG---
1 ATCTGTTA--TCTCTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTT
86323762 CTTCAATGAAGGTCAG
64 CTTCAATGAAGGTCAG
*
86323778 ATCTGCTGTGTCT-TCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTG--
1 ATCTG-T-TATCTCT-GATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCT
86323840 -CTTCAATGAAGGTCAG
63 TCTTCAATGAAGGTCAG
86323856 ATCTG
1 ATCTG
86323861 CTATGTCTTC
Statistics
Matches: 217, Mismatches: 13, Indels: 29
0.84 0.05 0.11
Matches are distributed among these distances:
77 3 0.01
78 146 0.67
79 6 0.03
80 3 0.01
81 1 0.00
82 1 0.00
84 1 0.00
87 14 0.06
89 10 0.05
90 1 0.00
91 31 0.14
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (79 bp):
ATCTGTTATCTCTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCT
TCAATGAAGGTCAG
Found at i:86323905 original size:78 final size:78
Alignment explanation
Indices: 86323611--86323879 Score: 459
Period size: 78 Copynumber: 3.4 Consensus size: 78
86323601 GATGTAACAC
*
86323611 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCTGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
86323676 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* ** *
86323689 ATAAAGGTCCA-ATCTATTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
86323753 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
*
86323767 ATGAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
86323832 TGGATCTGCTTCA
66 TGGATCTGCTTCA
*
86323845 ATGAAGGTCAGATCTGCTATGTCTTCTATCTGCTC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTC
86323880 TCTGTCGAAT
Statistics
Matches: 177, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
77 2 0.01
78 173 0.98
79 2 0.01
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.33
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:86324516 original size:175 final size:175
Alignment explanation
Indices: 86324304--86324693 Score: 710
Period size: 175 Copynumber: 2.2 Consensus size: 175
86324294 AAATCTGTTA
* * *
86324304 TCTTCGATCTACTCTCTGAC-AATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAAC
1 TCTTCGATCTGCTCTCTGCCGAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAAC
*
86324368 ACGTGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCTTC
66 ACGTGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATC
86324433 TTAGATTTGCTTCAACGTAAACACATGAAAGCCAAATCAGCTATG
131 TTAGATTTGCTTCAACGTAAACACATGAAAGCCAAATCAGCTATG
86324478 TCTTCGATCTGCTCTCTGCCGAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAAC
1 TCTTCGATCTGCTCTCTGCCGAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAAC
*
86324543 ACGTGAAAGCCAAATTAGCTATGTCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATC
66 ACGTGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATC
*
86324608 TTAGATTTGCTTCAACGTAAACACATGAAAGCCAAATCAGTTATG
131 TTAGATTTGCTTCAACGTAAACACATGAAAGCCAAATCAGCTATG
*
86324653 TCTTCGATCTGCTCTCTGCCGAACACAGAGATGCCAAATCA
1 TCTTCGATCTGCTCTCTGCCGAATACAGAGATGCCAAATCA
86324694 GTCATCTTCG
Statistics
Matches: 208, Mismatches: 7, Indels: 1
0.96 0.03 0.00
Matches are distributed among these distances:
174 18 0.09
175 190 0.91
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (175 bp):
TCTTCGATCTGCTCTCTGCCGAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAAC
ACGTGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATC
TTAGATTTGCTTCAACGTAAACACATGAAAGCCAAATCAGCTATG
Found at i:86324543 original size:88 final size:87
Alignment explanation
Indices: 86324304--86324797 Score: 656
Period size: 87 Copynumber: 5.6 Consensus size: 87
86324294 AAATCTGTTA
* *
86324304 TCTTCGATCTACTCTCTGACAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
1 TCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
*
86324369 CGTGAAAGCCAAATCAGCTATG
66 CATGAAAGCCAAATCAGCTATG
* *
86324391 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCTTCTTAGATTTGCTTCAACGTAAACA
1 TCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
86324456 CATGAAAGCCAAATCAGCTATG
66 CATGAAAGCCAAATCAGCTATG
*
86324478 TCTTCGATCTGCTCTCTGCCGAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAAC
1 TCTTCGATCTGCTCTCTGCC-AATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAAC
* *
86324543 ACGTGAAAGCCAAATTAGCTATG
65 ACATGAAAGCCAAATCAGCTATG
*
86324566 TCTTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
1 TCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
*
86324631 CATGAAAGCCAAATCAGTTATG
66 CATGAAAGCCAAATCAGCTATG
* * * * *
86324653 TCTTCGATCTGCTCTCTGCCGAACACAGAGATGCCAAATCAGTCATCTTCGATCTG-TTC-TCTG
1 TCTTCGATCTGCTCTCTGCC-AATACAGAGACGCC-AA--A-TCATCTTAGATTTGCTTCAAC-G
** * * *
86324716 CCAATACA-GAGACGCCAAATCTG-T-TG
60 TAAACACATGA-AAGCCAAATCAGCTATG
* * * * *
86324742 TCTTCGATCTGCTCTCTGCCAATACAAATATGCCAAATCATCTTGGATCTGCTTCA
1 TCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCA
86324798 GTATAAATAC
Statistics
Matches: 367, Mismatches: 30, Indels: 21
0.88 0.07 0.05
Matches are distributed among these distances:
84 13 0.04
85 4 0.01
87 185 0.50
88 105 0.29
89 24 0.07
90 4 0.01
91 20 0.05
92 12 0.03
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.28
Consensus pattern (87 bp):
TCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
CATGAAAGCCAAATCAGCTATG
Found at i:86324746 original size:44 final size:44
Alignment explanation
Indices: 86324286--86324781 Score: 212
Period size: 47 Copynumber: 11.3 Consensus size: 44
86324276 GTCGAATATG
* * * * *
86324286 GAGATGCCAAATCTGTTATCTTCGATCTACTCTCTGACAATACA
1 GAGACGCCAAATCAGTTGTCTTCGATCTGCTCTCTGCCAATACA
* * ** *
86324330 GAGACGCCAAATCA----TCTTAGATTTGCT-TCAACGTAA-ACA
1 GAGACGCCAAATCAGTTGTCTTCGATCTGCTCTCTGC-CAATACA
* * *
86324369 CGTGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCCCTGCCAATACA
1 -GAG-ACGCCAAATCAG-T-TGTCTTCGATCTGCTCTCTGCCAATACA
* * ** *
86324417 GAGACGCCAAATC---T-TCTTAGATTTGCT-TCAACGTAA-ACA
1 GAGACGCCAAATCAGTTGTCTTCGATCTGCTCTCTGC-CAATACA
* *
86324456 CATGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCTCTGCCGAATACA
1 GA-G-ACGCCAAATCAG-T-TGTCTTCGATCTGCTCTCTGCC-AATACA
* * * ** *
86324505 GAGATGCCAAATCA----TCTTAGATTTGCT-TCAACGTAA-ACA
1 GAGACGCCAAATCAGTTGTCTTCGATCTGCTCTCTGC-CAATACA
* * * *
86324544 CGTGAAAGCCAAATTAGCTATGTCTTCGATCTGCTCCCTGCCAATACA
1 -GAG-ACGCCAAATCAG-T-TGTCTTCGATCTGCTCTCTGCCAATACA
* * ** *
86324592 GAGACGCCAAATCA----TCTTAGATTTGCT-TCAACGTAA-ACA
1 GAGACGCCAAATCAGTTGTCTTCGATCTGCTCTCTGC-CAATACA
* * *
86324631 CATGAAAGCCAAATCAGTTATGTCTTCGATCTGCTCTCTGCCGAACACA
1 GA-G-ACGCCAAATCAG-T-TGTCTTCGATCTGCTCTCTGCC-AATACA
* ** *
86324680 GAGATGCCAAATCAGTCATCTTCGATCTGTTCTCTGCCAATACA
1 GAGACGCCAAATCAGTTGTCTTCGATCTGCTCTCTGCCAATACA
*
86324724 GAGACGCCAAATCTGTTGTCTTCGATCTGCTCTCTGCCAATACA
1 GAGACGCCAAATCAGTTGTCTTCGATCTGCTCTCTGCCAATACA
* * *
86324768 AATATGCCAAATCA
1 GAGACGCCAAATCA
86324782 TCTTGGATCT
Statistics
Matches: 327, Mismatches: 79, Indels: 92
0.66 0.16 0.18
Matches are distributed among these distances:
39 20 0.06
40 49 0.15
41 50 0.15
44 66 0.20
45 19 0.06
46 20 0.06
47 73 0.22
48 22 0.07
49 8 0.02
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (44 bp):
GAGACGCCAAATCAGTTGTCTTCGATCTGCTCTCTGCCAATACA
Found at i:86325800 original size:13 final size:13
Alignment explanation
Indices: 86325782--86325832 Score: 68
Period size: 13 Copynumber: 3.9 Consensus size: 13
86325772 TGGCCTCTCC
86325782 ATTTTTTCTTTTT
1 ATTTTTTCTTTTT
*
86325795 ATTTTTTATTTTT
1 ATTTTTTCTTTTT
*
86325808 CTTTTTTCTTTTT
1 ATTTTTTCTTTTT
86325821 -TTATTTTCTTTT
1 ATT-TTTTCTTTT
86325833 CCCCCCATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
12 2 0.06
13 32 0.94
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.84
Consensus pattern (13 bp):
ATTTTTTCTTTTT
Found at i:86325805 original size:20 final size:20
Alignment explanation
Indices: 86325782--86325832 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 20
86325772 TGGCCTCTCC
86325782 ATTTTTTCTTTTTAT-TTTTT
1 ATTTTTTCTTTTT-TCTTTTT
86325802 A-TTTTTCTTTTTTCTTTTT
1 ATTTTTTCTTTTTTCTTTTT
86325821 -TTATTTTCTTTT
1 ATT-TTTTCTTTT
86325833 CCCCCCATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
18 1 0.04
19 17 0.61
20 10 0.36
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.84
Consensus pattern (20 bp):
ATTTTTTCTTTTTTCTTTTT
Found at i:86332019 original size:23 final size:22
Alignment explanation
Indices: 86331976--86332033 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
86331966 AAAAGGTATC
* *
86331976 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
86331997 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
86332020 TACATATCATATCT
1 TACAAATCATATCT
86332034 AAGATTGTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.09
22 18 0.56
23 11 0.34
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:86332027 original size:17 final size:19
Alignment explanation
Indices: 86332012--86332084 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
86332002 AATCATATCT
*
86332012 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
86332031 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
86332048 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
86332067 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
86332085 TGAAGATTAT
Statistics
Matches: 51, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
17 17 0.33
19 34 0.67
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:86332036 original size:19 final size:19
Alignment explanation
Indices: 86331989--86332084 Score: 106
Period size: 19 Copynumber: 4.9 Consensus size: 19
86331979 AAATTAAATC
*
86331989 TCTAAGATTACAAAATCATA
1 TCTAAGATTAC-ATATCATA
86332009 TCTTCTAAGATTACATATCATA
1 ---TCTAAGATTACATATCATA
*
86332031 TCTAAGATT--GTATCATA
1 TCTAAGATTACATATCATA
*
86332048 TCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATA
*
86332067 TCTAAGATTGCATATCAT
1 TCTAAGATTACATATCAT
86332085 TGAAGATTAT
Statistics
Matches: 68, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
17 16 0.24
19 34 0.50
22 7 0.10
23 11 0.16
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.38
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:86332091 original size:36 final size:36
Alignment explanation
Indices: 86332015--86332093 Score: 108
Period size: 36 Copynumber: 2.2 Consensus size: 36
86332005 CATATCTTCT
*
86332015 AAGATTACATATCATATCTAAGATTGTATCATATCT
1 AAGATTACATATCATATCTAAGATTGTATCATATCG
*
86332051 AAGATTGCATATCATATCTAAGATTGCATATCAT-T-G
1 AAGATTACATATCATATCTAAGATTG--TATCATATCG
86332087 AAGATTA
1 AAGATTA
86332094 TATTTCCGTA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
36 31 0.82
37 1 0.03
38 6 0.16
ACGTcount: A:0.39, C:0.13, G:0.11, T:0.37
Consensus pattern (36 bp):
AAGATTACATATCATATCTAAGATTGTATCATATCG
Found at i:86332092 original size:17 final size:19
Alignment explanation
Indices: 86332015--86332092 Score: 92
Period size: 19 Copynumber: 4.3 Consensus size: 19
86332005 CATATCTTCT
* *
86332015 AAGATTACATATCATATCT
1 AAGATTGCATATCATATCG
*
86332034 AAGATTG--TATCATATCT
1 AAGATTGCATATCATATCG
*
86332051 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCG
86332070 AAGATTGCATATCAT-T-G
1 AAGATTGCATATCATATCG
86332087 AAGATT
1 AAGATT
86332093 ATATTTCCGT
Statistics
Matches: 55, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
17 23 0.42
18 1 0.02
19 31 0.56
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.37
Consensus pattern (19 bp):
AAGATTGCATATCATATCG
Found at i:86334394 original size:31 final size:32
Alignment explanation
Indices: 86334333--86334404 Score: 83
Period size: 31 Copynumber: 2.2 Consensus size: 32
86334323 ATAGAAAACA
* *
86334333 AAAAAGAAGTAGTAAATATTTTACTAAAAGTTTT
1 AAAAA-AA-TAGTAAATATATTACTAAAAGTTGT
* *
86334367 TAAAAAATAGTAAA-ATATTATTAAAAGTTGT
1 AAAAAAATAGTAAATATATTACTAAAAGTTGT
86334398 AAAAAAA
1 AAAAAAA
86334405 ATTATAAAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
31 20 0.61
32 7 0.21
33 2 0.06
34 4 0.12
ACGTcount: A:0.57, C:0.01, G:0.10, T:0.32
Consensus pattern (32 bp):
AAAAAAATAGTAAATATATTACTAAAAGTTGT
Found at i:86334405 original size:32 final size:32
Alignment explanation
Indices: 86334332--86334414 Score: 80
Period size: 32 Copynumber: 2.6 Consensus size: 32
86334322 AATAGAAAAC
*
86334332 AAAAAAGAAGTAGTAAATATTTTACTAAAAGTTT
1 AAAAAA-AAGTAGTAAA-ATATTACTAAAAGTTT
** *
86334366 TTAAAAAA-TAGTAAAATATTATTAAAAGTTGT
1 AAAAAAAAGTAGTAAAATATTACTAAAAGTT-T
*
86334398 AAAAAAAATTA-TAAAAT
1 AAAAAAAAGTAGTAAAAT
86334415 TGAAAATTAC
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
31 13 0.32
32 20 0.49
33 4 0.10
34 4 0.10
ACGTcount: A:0.58, C:0.01, G:0.08, T:0.33
Consensus pattern (32 bp):
AAAAAAAAGTAGTAAAATATTACTAAAAGTTT
Found at i:86334408 original size:22 final size:19
Alignment explanation
Indices: 86334378--86334420 Score: 50
Period size: 22 Copynumber: 2.1 Consensus size: 19
86334368 AAAAAATAGT
*
86334378 AAAATATTATTAAAAGTTGTAA
1 AAAAAATTA-TAAAA-TTG-AA
86334400 AAAAAATTATAAAATTGAA
1 AAAAAATTATAAAATTGAA
86334419 AA
1 AA
86334421 TTACAGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 4 0.20
20 3 0.15
21 5 0.25
22 8 0.40
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (19 bp):
AAAAAATTATAAAATTGAA
Found at i:86334459 original size:17 final size:18
Alignment explanation
Indices: 86334446--86334480 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
86334436 ATAAAATTTT
86334446 TAAAAATATTAAATATTA
1 TAAAAATATTAAATATTA
*
86334464 TAAAAA-ATTAAAAATTA
1 TAAAAATATTAAATATTA
86334481 CTACTCTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (18 bp):
TAAAAATATTAAATATTA
Found at i:86338928 original size:41 final size:42
Alignment explanation
Indices: 86338819--86338978 Score: 191
Period size: 42 Copynumber: 3.8 Consensus size: 42
86338809 ACCATACCAT
* * **
86338819 TGCCATATCCCAGATATGGTCTTATATGTAA-TCTTGTATCGA
1 TGCCATATCCCAGATATGGTCTTACACG-AAGTCTCATATCGA
*
86338861 TGCCAATAGCCCA-ACTATGGTCTTACACGAAGTCTCATATCGA
1 TGCC-ATATCCCAGA-TATGGTCTTACACGAAGTCTCATATCGA
*
86338904 T-CCATATCCCAGATATGGTCTTACACGAAGTCTCATATTGA
1 TGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCGA
* * *
86338945 TGCCATACCCCAAATATGGTCTTACACGTAGTCT
1 TGCCATATCCCAGATATGGTCTTACACGAAGTCT
86338979 TAGTAACCCT
Statistics
Matches: 103, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
41 35 0.34
42 39 0.38
43 29 0.28
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (42 bp):
TGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCGA
Found at i:86347925 original size:153 final size:152
Alignment explanation
Indices: 86347648--86347956 Score: 501
Period size: 153 Copynumber: 2.0 Consensus size: 152
86347638 ATACTTGCTC
* * * *
86347648 TGAAATGTAGTATTAAAGAATTCCCAATGAACATTCTGAATTAGGGCCTAGTTAGAATAGTTGTT
1 TGAAATGTAGTATTAAAGAATTCCCAATGAACATCCCGAATTAGGGCCTAGTCAGAATAGTGGTT
* * *
86347713 TCGGGGCCACAAATCTGACGTTAAAATAATTATTTAATGATCATTATGAAGTCTAGGATATAGGA
66 TCAGGACCACAAATCTGACATTAAAATAATTATTTAATGATCATTATGAAGTCTAGGATATAGGA
86347778 ATAAGCATGTGTTAAAGTTTCA
131 ATAAGCATGTGTTAAAGTTTCA
*
86347800 TGAAATGTAGTATTAAAGAATTCCCAATGTAACATCCCGAATTTGGGCCTAGTCAGAATAGTGGT
1 TGAAATGTAGTATTAAAGAATTCCCAATG-AACATCCCGAATTAGGGCCTAGTCAGAATAGTGGT
* *
86347865 TTCAGGACCACAAATCTGACATTAAAATAATTATTTTATGATCATTATGAAGTCTAGGATATGGG
65 TTCAGGACCACAAATCTGACATTAAAATAATTATTTAATGATCATTATGAAGTCTAGGATATAGG
* *
86347930 AATAATCATGTGTTAAAGTTTTA
130 AATAAGCATGTGTTAAAGTTTCA
86347953 TGAA
1 TGAA
86347957 GAAATTCTAT
Statistics
Matches: 144, Mismatches: 12, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
152 29 0.20
153 115 0.80
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (152 bp):
TGAAATGTAGTATTAAAGAATTCCCAATGAACATCCCGAATTAGGGCCTAGTCAGAATAGTGGTT
TCAGGACCACAAATCTGACATTAAAATAATTATTTAATGATCATTATGAAGTCTAGGATATAGGA
ATAAGCATGTGTTAAAGTTTCA
Found at i:86353749 original size:55 final size:55
Alignment explanation
Indices: 86353673--86353778 Score: 151
Period size: 55 Copynumber: 1.9 Consensus size: 55
86353663 TGACTTTTAA
*
86353673 ACATGGTCATGGCACACGCCCGTATGGACTACCCGTGTTCAATACTAACTTTGGG
1 ACATGGTCATGGCACACGCCCGTATGGACTACCCGTGTCCAATACTAACTTTGGG
* * * *
86353728 ACATGG-CTATGGGACACGCCCGTGTGGCCTACCCGTGTCCTATACTAACTT
1 ACATGGTC-ATGGCACACGCCCGTATGGACTACCCGTGTCCAATACTAACTT
86353779 ATAAATTAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
54 1 0.02
55 44 0.98
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (55 bp):
ACATGGTCATGGCACACGCCCGTATGGACTACCCGTGTCCAATACTAACTTTGGG
Found at i:86364163 original size:19 final size:19
Alignment explanation
Indices: 86364113--86364165 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
86364103 ATATTTTTTT
*
86364113 ATTTTAT-TAATTGCAATA
1 ATTTTATATAATTTCAATA
* * *
86364131 ATTTTTTATTATTTTAATA
1 ATTTTATATAATTTCAATA
86364150 ATTTTATATAATTTCA
1 ATTTTATATAATTTCA
86364166 TTTAACATAT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
18 6 0.22
19 21 0.78
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.58
Consensus pattern (19 bp):
ATTTTATATAATTTCAATA
Found at i:86368541 original size:30 final size:30
Alignment explanation
Indices: 86368507--86368567 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
86368497 AGACTCATCA
86368507 AGGTTAGATTACATAATTTATTCATTATTT
1 AGGTTAGATTACATAATTTATTCATTATTT
86368537 AGGTTAGATTACATAATTTATTCATTATTT
1 AGGTTAGATTACATAATTTATTCATTATTT
86368567 A
1 A
86368568 ATTAAATTCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.34, C:0.07, G:0.10, T:0.49
Consensus pattern (30 bp):
AGGTTAGATTACATAATTTATTCATTATTT
Found at i:86369406 original size:40 final size:40
Alignment explanation
Indices: 86369332--86369433 Score: 138
Period size: 40 Copynumber: 2.6 Consensus size: 40
86369322 AACCCAAGTA
*
86369332 CCTTCGGGAT-TTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGG-TCTTAGCCCGGATATAGCAACTAGCACAAATG
86369371 CCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGTCTTAGCCCGGATATAG-CAACTAGCACAAATG
* *
86369411 CCTTCGGGACTTAGCCCAGATAT
1 CCTTCGGGTCTTAGCCCGGATAT
86369434 CATTCGAATA
Statistics
Matches: 57, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
38 1 0.02
39 12 0.21
40 43 0.75
41 1 0.02
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGTCTTAGCCCGGATATAGCAACTAGCACAAATG
Found at i:86371606 original size:19 final size:20
Alignment explanation
Indices: 86371582--86371629 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
86371572 AAATAATAGT
86371582 TTGATTAAGATAA-TTAAAC
1 TTGATTAAGATAAGTTAAAC
*
86371601 TTGATTAAGTTAAGTTAAAC
1 TTGATTAAGATAAGTTAAAC
86371621 TTGATTAAG
1 TTGATTAAG
86371630 CCTAATTAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
19 12 0.44
20 15 0.56
ACGTcount: A:0.42, C:0.04, G:0.15, T:0.40
Consensus pattern (20 bp):
TTGATTAAGATAAGTTAAAC
Found at i:86376182 original size:11 final size:11
Alignment explanation
Indices: 86376166--86376191 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
86376156 CATAACATAC
86376166 AAAACAATTTG
1 AAAACAATTTG
86376177 AAAACAATTTG
1 AAAACAATTTG
86376188 AAAA
1 AAAA
86376192 TTATTAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.62, C:0.08, G:0.08, T:0.23
Consensus pattern (11 bp):
AAAACAATTTG
Found at i:86376672 original size:27 final size:27
Alignment explanation
Indices: 86376642--86376701 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 27
86376632 GGTAATTCAA
* * *
86376642 AATAAATATTATACAAAATTTTTAAAC
1 AATAAATATAAAACAAAATTTTAAAAC
* *
86376669 AATATAATATAAAAGAGAATTTTAAAAC
1 AATA-AATATAAAACAAAATTTTAAAAC
86376697 AATAA
1 AATAA
86376702 TTTTAGAATT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
27 5 0.19
28 22 0.81
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.32
Consensus pattern (27 bp):
AATAAATATAAAACAAAATTTTAAAAC
Found at i:86378670 original size:44 final size:44
Alignment explanation
Indices: 86378607--86378715 Score: 137
Period size: 44 Copynumber: 2.5 Consensus size: 44
86378597 GGAGAACAGT
* * ***
86378607 TTGCTTCCTTACTACCTCAGAAAGATAAGACTACAATTTTTGGC
1 TTGCTCCCTTGCTACCTCAGAAAGATAAGACTACAATTTTCAAC
* *
86378651 TTGCTCCCTTGCTACCTCAGGAAGATAAGGCTACAATTTTCAAC
1 TTGCTCCCTTGCTACCTCAGAAAGATAAGACTACAATTTTCAAC
* *
86378695 CTGCTCTCTTGCTACCTCAGA
1 TTGCTCCCTTGCTACCTCAGA
86378716 GAGAAAAGGC
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 55 1.00
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.32
Consensus pattern (44 bp):
TTGCTCCCTTGCTACCTCAGAAAGATAAGACTACAATTTTCAAC
Found at i:86378980 original size:178 final size:178
Alignment explanation
Indices: 86378657--86378994 Score: 514
Period size: 178 Copynumber: 1.9 Consensus size: 178
86378647 TGGCTTGCTC
* * * *
86378657 CCTTGCTACCTCAGGAAGATAAGGCTACAATTTTCAACCTGCTCTCTTGCTACCTCAGAGAGAAA
1 CCTTGCTACCTCAAGAAGATAAGACTACAATCTCCAACCTGCTCTCTTGCTACCTCAGAGAGAAA
* * * *
86378722 AGGCTGGTGGCTAAAATCTGCTCCCCTACTACCTCGGGAAGATAAGATTCGCCATCTTTGATCTG
66 AGGCTGGCGGCTAAAATCTGCTCCCCTACTACCTCGAGAAGATAAGATTCGCCATCTTCGATATG
*
86378787 CTCCACTACTATCTCAGGGAAATAAGATCTTCAATCTTCAGTCTACTT
131 CTCCACTACTATCTCAAGGAAATAAGATCTTCAATCTTCAGTCTACTT
* * *
86378835 CCTTGCTACCTCAAGAAGATAAGACTACAATCTCCAACCTGCTCTCTTGCTACTTTAGAGAGATA
1 CCTTGCTACCTCAAGAAGATAAGACTACAATCTCCAACCTGCTCTCTTGCTACCTCAGAGAGAAA
* *
86378900 AGGCTGGCGGCTAAAATCTGCTCCCCTGCTACCTCGAGAAGATAAGATTCGCTATCTTCGATATG
66 AGGCTGGCGGCTAAAATCTGCTCCCCTACTACCTCGAGAAGATAAGATTCGCCATCTTCGATATG
* ** *
86378965 CTCTACTGTTATCTCAAGGAGATAAGATCT
131 CTCCACTACTATCTCAAGGAAATAAGATCT
86378995 GTGAATTCAC
Statistics
Matches: 142, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
178 142 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (178 bp):
CCTTGCTACCTCAAGAAGATAAGACTACAATCTCCAACCTGCTCTCTTGCTACCTCAGAGAGAAA
AGGCTGGCGGCTAAAATCTGCTCCCCTACTACCTCGAGAAGATAAGATTCGCCATCTTCGATATG
CTCCACTACTATCTCAAGGAAATAAGATCTTCAATCTTCAGTCTACTT
Found at i:86380184 original size:13 final size:13
Alignment explanation
Indices: 86380166--86380191 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
86380156 GCCTCTCCTC
86380166 TTTATTTTTTATT
1 TTTATTTTTTATT
86380179 TTTATTTTTTATT
1 TTTATTTTTTATT
86380192 AGGTCTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTATTTTTTATT
Found at i:86382644 original size:46 final size:46
Alignment explanation
Indices: 86382591--86382766 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
86382581 TATTTGGGCA
* *
86382591 TCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
86382637 TCCGAACTCGTTGAGTTGAATCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
86382684 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
86382730 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
86382767 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 62 0.58
47 28 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:86382740 original size:93 final size:93
Alignment explanation
Indices: 86382587--86382758 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
86382577 GGGATATTTG
* * * *
86382587 GGCATCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAG
86382652 TTGAATCCGAGTTCGTGAGATGTAACTA
66 TTGAATCCGAGTTCGTGAGATGTAACTA
* *
86382680 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAG
*
86382745 TTGAGTCCGAGTTC
66 TTGAATCCGAGTTC
86382759 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAG
TTGAATCCGAGTTCGTGAGATGTAACTA
Found at i:86385493 original size:27 final size:29
Alignment explanation
Indices: 86385426--86385493 Score: 79
Period size: 27 Copynumber: 2.4 Consensus size: 29
86385416 AGGAATGAAC
86385426 TATATACAT-AATAGATTTGAAAAGAAATA
1 TATATACATAAATAGATTT-AAAAGAAATA
* * *
86385455 GATATACCTAAATAGATTT-AAA-ATATA
1 TATATACATAAATAGATTTAAAAGAAATA
86385482 TATATACATAAA
1 TATATACATAAA
86385494 AAACAAAATG
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
27 14 0.42
28 3 0.09
29 7 0.21
30 9 0.27
ACGTcount: A:0.54, C:0.06, G:0.07, T:0.32
Consensus pattern (29 bp):
TATATACATAAATAGATTTAAAAGAAATA
Found at i:86389881 original size:24 final size:24
Alignment explanation
Indices: 86389853--86389900 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
86389843 AGCGACTTGA
86389853 TAGTGTGATGCTACCTCCGATGAT
1 TAGTGTGATGCTACCTCCGATGAT
86389877 TAGTGTGATGCTACCTCCGATGAT
1 TAGTGTGATGCTACCTCCGATGAT
86389901 GTCCAACTCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.33
Consensus pattern (24 bp):
TAGTGTGATGCTACCTCCGATGAT
Found at i:86391214 original size:46 final size:49
Alignment explanation
Indices: 86391071--86391292 Score: 214
Period size: 46 Copynumber: 4.7 Consensus size: 49
86391061 TCCATCAACT
* **
86391071 CGATGCCATGTCCTAGACATGGTCTTACACTGACTAT-CGAAATCGAGGC
1 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTATAC-ATCTCGAGGC
* * * * *
86391120 CAATGCCATATCCTAGTCATGGTCTTACACT---AACACATCTCGTA-GC
1 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTATACATCTCG-AGGC
*
86391166 CGATG-CATGTCCTAGACAT-GTCTTACACTGGCT-TACATCTTGAGGC
1 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTATACATCTCGAGGC
* * * * *
86391212 CGATG-CATGTCCTAGACAT-GTCTTACACTAGCTCT-CATCTCAATGT
1 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTATACATCTCGAGGC
*
86391258 CGATGCCATGTCCCAGACATGGTCTTACACTGGCT
1 CGATGCCATGTCCTAGACATGGTCTTACACTGGCT
86391293 CACAAATAAC
Statistics
Matches: 144, Mismatches: 20, Indels: 19
0.79 0.11 0.10
Matches are distributed among these distances:
44 10 0.07
45 13 0.09
46 64 0.44
47 16 0.11
48 13 0.09
49 28 0.19
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (49 bp):
CGATGCCATGTCCTAGACATGGTCTTACACTGGCTATACATCTCGAGGC
Found at i:86393140 original size:27 final size:27
Alignment explanation
Indices: 86393077--86393141 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
86393067 CTTCATAATC
*
86393077 TCCCATGTTTATTGTCCAAGAGGACTA
1 TCCCATGTTTAGTGTCCAAGAGGACTA
* *
86393104 -CCCAGAGTTTAGTGTCCTAA-TGGACTA
1 TCCCA-TGTTTAGTGTCC-AAGAGGACTA
86393131 TCCCATGTTTA
1 TCCCATGTTTA
86393142 ATGTGTTGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
26 4 0.13
27 21 0.68
28 6 0.19
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (27 bp):
TCCCATGTTTAGTGTCCAAGAGGACTA
Found at i:86393494 original size:45 final size:45
Alignment explanation
Indices: 86393426--86393547 Score: 129
Period size: 45 Copynumber: 2.7 Consensus size: 45
86393416 AAAGGATGTT
* * * * * *
86393426 ATAACGTCTTTTAGCTATAGTCTTCTTCAT-TTATATCATGATGCC
1 ATAACATCTTTCAGCTATGGTCTTATTCATCTT-TAGCATGATACC
* ** *
86393471 ATAACATCTTTCAGTTATGGTCTTATTGGTCTTTAGCGTGATACC
1 ATAACATCTTTCAGCTATGGTCTTATTCATCTTTAGCATGATACC
*
86393516 ATAACATCTTCCAGCTATGGTCTTATTCATCT
1 ATAACATCTTTCAGCTATGGTCTTATTCATCT
86393548 CTAGGCATAT
Statistics
Matches: 62, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
45 60 0.97
46 2 0.03
ACGTcount: A:0.24, C:0.20, G:0.13, T:0.43
Consensus pattern (45 bp):
ATAACATCTTTCAGCTATGGTCTTATTCATCTTTAGCATGATACC
Found at i:86395507 original size:181 final size:181
Alignment explanation
Indices: 86395198--86395546 Score: 644
Period size: 181 Copynumber: 1.9 Consensus size: 181
86395188 AATGCAACAA
* *
86395198 AAGATGAGGGAAAGGTAAGAGTTGTAGATGAGTACCTATTACGATTTGTACTCTCATAATTTGAG
1 AAGAGGAGGGAAAGGTAAGAGTTGTAGATGAGTAACTATTACGATTTGTACTCTCATAATTTGAG
* *
86395263 TTCAATATATATAAGTTGTTACAAGCTAGCTTATTTGAGGTATGCATTCTATTTTTCTCATGATT
66 TTCAATAGATATAAGTTGTTACAAGATAGCTTATTTGAGGTATGCATTCTATTTTTCTCATGATT
86395328 CGGTTTGCATATGATGATATGGAATGTCGAGAATTGAAACCGGGCTATCTC
131 CGGTTTGCATATGATGATATGGAATGTCGAGAATTGAAACCGGGCTATCTC
86395379 AAGAGGAGGGAAAGGTAAGAGTTGTAGATGAGTAACTATTACGATTTGTACTCTCATAATTTGAG
1 AAGAGGAGGGAAAGGTAAGAGTTGTAGATGAGTAACTATTACGATTTGTACTCTCATAATTTGAG
*
86395444 TTCAATAGATATAAGTTGTTACAAGATAGCTTATTTGAGGTATGGATTCTATTTTTCTCATGATT
66 TTCAATAGATATAAGTTGTTACAAGATAGCTTATTTGAGGTATGCATTCTATTTTTCTCATGATT
*
86395509 CGGTTTGTATATGATGATATGGAATGTCGAGAATTGAA
131 CGGTTTGCATATGATGATATGGAATGTCGAGAATTGAA
86395547 TTGAGATGAC
Statistics
Matches: 162, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
181 162 1.00
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (181 bp):
AAGAGGAGGGAAAGGTAAGAGTTGTAGATGAGTAACTATTACGATTTGTACTCTCATAATTTGAG
TTCAATAGATATAAGTTGTTACAAGATAGCTTATTTGAGGTATGCATTCTATTTTTCTCATGATT
CGGTTTGCATATGATGATATGGAATGTCGAGAATTGAAACCGGGCTATCTC
Found at i:86402269 original size:26 final size:26
Alignment explanation
Indices: 86402229--86402285 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
86402219 AAGCATCAAA
* *
86402229 TATAATCCTTAGCATATCTAAACACC
1 TATAATCCTTAGCATAGCCAAACACC
*
86402255 TATAATCCTTGGCATAGCCAAACACC
1 TATAATCCTTAGCATAGCCAAACACC
86402281 TATAA
1 TATAA
86402286 ACACATTAAC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.39, C:0.26, G:0.07, T:0.28
Consensus pattern (26 bp):
TATAATCCTTAGCATAGCCAAACACC
Found at i:86402328 original size:11 final size:11
Alignment explanation
Indices: 86402312--86402337 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
86402302 ATATACATAC
86402312 TCATCCTAGAT
1 TCATCCTAGAT
86402323 TCATCCTAGAT
1 TCATCCTAGAT
86402334 TCAT
1 TCAT
86402338 ATAGCACACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.27, G:0.08, T:0.38
Consensus pattern (11 bp):
TCATCCTAGAT
Found at i:86408133 original size:14 final size:14
Alignment explanation
Indices: 86408114--86408140 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
86408104 AAAAAGAATA
86408114 AGGAAGAAGAGAAG
1 AGGAAGAAGAGAAG
86408128 AGGAAGAAGAGAA
1 AGGAAGAAGAGAA
86408141 ACTAATGTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (14 bp):
AGGAAGAAGAGAAG
Found at i:86409598 original size:27 final size:27
Alignment explanation
Indices: 86409568--86409923 Score: 457
Period size: 27 Copynumber: 13.2 Consensus size: 27
86409558 AAAGTACTCC
*
86409568 CGATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
86409595 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** * *
86409622 TGATTTTTAAAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
86409649 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
86409676 C-AGTTTATAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
**
86409703 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
86409730 CGATTTACAAAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
86409757 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
86409784 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
86409811 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
86409838 TGATTTACAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
86409865 CAATTTACAAAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
86409892 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
86409919 TGATT
1 CGATT
86409924 GTGAAATTAC
Statistics
Matches: 281, Mismatches: 44, Indels: 8
0.84 0.13 0.02
Matches are distributed among these distances:
26 2 0.01
27 277 0.99
28 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:86409958 original size:27 final size:27
Alignment explanation
Indices: 86409928--86410123 Score: 248
Period size: 27 Copynumber: 7.3 Consensus size: 27
86409918 TTGATTGTGA
*
86409928 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
86409955 AATTTCCGAAATACCTCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
86409982 AATTACTGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
86410009 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
86410036 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
86410063 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
86410090 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
86410117 AATTACC
1 AATTACC
86410124 ATTTTGCTCC
Statistics
Matches: 144, Mismatches: 25, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 144 1.00
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:86410365 original size:27 final size:26
Alignment explanation
Indices: 86410326--86410404 Score: 104
Period size: 27 Copynumber: 3.0 Consensus size: 26
86410316 GGAAGCGTTT
*
86410326 TGGTGGCTATGCCACAAATATCTGTTC
1 TGGTGGCTCTGCCAC-AATATCTGTTC
*
86410353 TGGTGGCTCTGCCACAATATCTGTATT
1 TGGTGGCTCTGCCACAATATCTGT-TC
* *
86410380 TGGTGACTCTGTCACAATATCTGTT
1 TGGTGGCTCTGCCACAATATCTGTT
86410405 GACCGATCGA
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
26 10 0.21
27 37 0.79
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
TGGTGGCTCTGCCACAATATCTGTTC
Found at i:86410524 original size:22 final size:22
Alignment explanation
Indices: 86410492--86410550 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
86410482 CCCGTTATTA
*
86410492 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
86410514 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
86410536 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
86410551 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:86410737 original size:27 final size:27
Alignment explanation
Indices: 86410715--86410788 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
86410705 TAGGTGGGTT
*
86410715 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
*
86410742 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
86410769 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
86410789 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.12
27 36 0.86
28 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:86410915 original size:6 final size:6
Alignment explanation
Indices: 86410906--86411092 Score: 154
Period size: 6 Copynumber: 30.8 Consensus size: 6
86410896 TTGCATTCAC
* *
86410906 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
86410955 -TTACTA ATACTG GTTCTG ATTCTA ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* * *
86411003 ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG
*
86411052 ATTCTG GTTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
86411093 CATTTTGGTT
Statistics
Matches: 145, Mismatches: 20, Indels: 32
0.74 0.10 0.16
Matches are distributed among these distances:
5 11 0.08
6 121 0.83
7 10 0.07
8 3 0.02
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:86411025 original size:25 final size:24
Alignment explanation
Indices: 86410968--86411033 Score: 96
Period size: 25 Copynumber: 2.7 Consensus size: 24
86410958 CTAATACTGG
* * *
86410968 TTCTGATTCTAATTCTGTTACTGA
1 TTCTGATTCTGATTCTGTCACTAA
86410992 TTCTGATTCTGATTCTGTCACCTAA
1 TTCTGATTCTGATTCTGTCA-CTAA
86411017 TTCTGATTCTGATTCTG
1 TTCTGATTCTGATTCTG
86411034 ATTCTGTTAC
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
24 18 0.47
25 20 0.53
ACGTcount: A:0.18, C:0.20, G:0.14, T:0.48
Consensus pattern (24 bp):
TTCTGATTCTGATTCTGTCACTAA
Found at i:86411046 original size:85 final size:85
Alignment explanation
Indices: 86410906--86411092 Score: 329
Period size: 85 Copynumber: 2.2 Consensus size: 85
86410896 TTGCATTCAC
* *
86410906 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGGTTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
86410971 TGATTCTAATTCTGTTACTG
66 TGATTCTAATTCTGTTACTG
*
86410991 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATATTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
* *
86411056 TGGTTCTGATTCTGTTACTG
66 TGATTCTAATTCTGTTACTG
86411076 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
86411093 CATTTTGGTT
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 97 1.00
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (85 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
TGATTCTAATTCTGTTACTG
Found at i:86411110 original size:30 final size:30
Alignment explanation
Indices: 86410906--86411113 Score: 207
Period size: 30 Copynumber: 7.1 Consensus size: 30
86410896 TTGCATTCAC
* *
86410906 ATTCTGATTCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-CAATTCTG
* *
86410937 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACCAATTCTG
* *
86410967 GTTCTGATTCTAATTCTGTT----A--CTG
1 ATTCTGATTCTGATTCTGTTACCAATTCTG
*
86410991 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACC-AATTCTG
*
86411022 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACCAAT-TCTG
* **
86411052 ATTCTGGTTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCAATTCTG
* *
86411082 ATTCTGATTCTCATTTTGGTT-CCAATTCTG
1 ATTCTGATTCTGATTCT-GTTACCAATTCTG
86411112 AT
1 AT
86411114 AATGTTTCTT
Statistics
Matches: 151, Mismatches: 16, Indels: 21
0.80 0.09 0.11
Matches are distributed among these distances:
24 20 0.13
26 1 0.01
29 2 0.01
30 79 0.52
31 49 0.32
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACCAATTCTG
Found at i:86416656 original size:294 final size:294
Alignment explanation
Indices: 86416095--86416682 Score: 838
Period size: 294 Copynumber: 2.0 Consensus size: 294
86416085 CTCCTGTAGA
* * *
86416095 ATCAATCGCCTCAACTCTTTATTGTTAGGCACACAAATCCGATCCCTGAAACACAAAACCTTGTA
1 ATCAATCACCTCAACTCTTTATTGTTAGGCACACAAATCCGAGCCCTGAAACACAAAACCTTATA
* *
86416160 ACTACTTAAACTAAAATCCGAAGTTTCACTTAAATCAATCTGTTGCAGACGTTAAACTAGAGACT
66 ACTACTTAAACTAAAATCCGAAGTTTCACTTAAATCAATCTATTGCAGACGTTAAACTAGAGACA
*
86416225 TATCACTCAACTGTTTAGATCGAATCTAATTGACCCAAGTTGGTTTAACCTGTAATTTAGCTAGC
131 TATCACTCAACTGTTTAGATCGAATCTAATTGACCCAAGTTGGTTTAACCTGCAATTTAGCTAGC
*
86416290 AAACTCCCATCCTCGAAAAAACTCAGACGAGCGAACATCACCCTCAGATCAATCATCGCTCTACA
196 AAACTCCCATCCTCGAAAAAACTCAGACGAGCGAACATCACCCTCAGATCAATCATCACTCTACA
* *
86416355 TCTAAGAGCATCTACCACCATATTAGCCTTATCG
261 GCTAAGAGCATCTACCACCACATTAGCCTTATCG
* * *
86416389 ATCAATCACCTCAACTCTTTGTTGTTAGGCACACAAATCTGAGCCCTGAAACACAAAGCCTTAT-
1 ATCAATCACCTCAACTCTTTATTGTTAGGCACACAAATCCGAGCCCTGAAACACAAAACCTTATA
* ** ** * * *
86416453 AGTTGTTCAAACTAAAATTTGAAGTTTCACTTGAATCAATCTATTGTAGATGTTAAACTAGAGAC
66 ACTACTT-AAACTAAAATCCGAAGTTTCACTTAAATCAATCTATTGCAGACGTTAAACTAGAGAC
* * * *
86416518 ATATCACTCAACTGTTTAGCTTGAATCTGATTGACCCATGTTGGTTTAACCTGCAATTTAGCTAG
130 ATATCACTCAACTGTTTAGATCGAATCTAATTGACCCAAGTTGGTTTAACCTGCAATTTAGCTAG
* ** * ** *
86416583 CAGACTCCCATCCTC-AAACAAACTCAGACGAGCGAACATTGCCCTCATATCGGTCATTACTCTA
195 CAAACTCCCATCCTCGAAA-AAACTCAGACGAGCGAACATCACCCTCAGATCAATCATCACTCTA
* * *
86416647 CGGCTAAGAGCATTTACCACTACATTAGCCTTATCG
259 CAGCTAAGAGCATCTACCACCACATTAGCCTTATCG
86416683 GAATGGTATT
Statistics
Matches: 258, Mismatches: 34, Indels: 4
0.87 0.11 0.01
Matches are distributed among these distances:
293 7 0.03
294 251 0.97
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.29
Consensus pattern (294 bp):
ATCAATCACCTCAACTCTTTATTGTTAGGCACACAAATCCGAGCCCTGAAACACAAAACCTTATA
ACTACTTAAACTAAAATCCGAAGTTTCACTTAAATCAATCTATTGCAGACGTTAAACTAGAGACA
TATCACTCAACTGTTTAGATCGAATCTAATTGACCCAAGTTGGTTTAACCTGCAATTTAGCTAGC
AAACTCCCATCCTCGAAAAAACTCAGACGAGCGAACATCACCCTCAGATCAATCATCACTCTACA
GCTAAGAGCATCTACCACCACATTAGCCTTATCG
Found at i:86424847 original size:32 final size:32
Alignment explanation
Indices: 86424801--86424863 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
86424791 ACGATAAAAG
*
86424801 TATATAAAAAATCATTATAAAGTGAAGCTTTA
1 TATAAAAAAAATCATTATAAAGTGAAGCTTTA
86424833 TATAAAAAAAATCATTATAAAGTGAAGCTTT
1 TATAAAAAAAATCATTATAAAGTGAAGCTTT
86424864 CACATTAGAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.51, C:0.06, G:0.10, T:0.33
Consensus pattern (32 bp):
TATAAAAAAAATCATTATAAAGTGAAGCTTTA
Found at i:86437101 original size:91 final size:89
Alignment explanation
Indices: 86437004--86437191 Score: 213
Period size: 90 Copynumber: 2.1 Consensus size: 89
86436994 GAATTTTTTC
* * * *
86437004 AAAAAAATAAAATAAAATTAAGCCCCTAC-TTTTTTTT-ATTC-ATTTAGGTATTTGAAATTTCA
1 AAAAAAA-AAAAAAAAATTAAGCCCC-ACTTTTTTTTTCACTCAATTT-CGTACTTGAAATTTCA
*
86437066 AAATGCAT-CAAAAGACCCTCAAATCTT
63 AAATGCATAAAAAAGACCCTCAAA-CTT
* ** * *
86437093 TAAAAAAAAAAAGCAATTAAGCCCCACTTTTTTTTTGCACTCAATTTCGTACTTGAACTTTTAAA
1 AAAAAAAAAAAAAAAATTAAGCCCCACTTTTTTTTT-CACTCAATTTCGTACTTGAAATTTCAAA
86437158 ATGCATAAAAAAGACCCTCAAACTT
65 ATGCATAAAAAAGACCCTCAAACTT
86437183 AAAAAAAAA
1 AAAAAAAAA
86437192 GTAATTAAAC
Statistics
Matches: 83, Mismatches: 11, Indels: 9
0.81 0.11 0.09
Matches are distributed among these distances:
87 2 0.02
88 23 0.28
89 6 0.07
90 34 0.41
91 18 0.22
ACGTcount: A:0.45, C:0.17, G:0.07, T:0.31
Consensus pattern (89 bp):
AAAAAAAAAAAAAAAATTAAGCCCCACTTTTTTTTTCACTCAATTTCGTACTTGAAATTTCAAAA
TGCATAAAAAAGACCCTCAAACTT
Found at i:86437320 original size:39 final size:38
Alignment explanation
Indices: 86437261--86437369 Score: 116
Period size: 39 Copynumber: 2.9 Consensus size: 38
86437251 AATTTTATTT
*
86437261 AAAAAAT-T-AAAATATTAAAAAATTATTAAAATTAG-A
1 AAAAAATATAAAAATAGTAAAAAATTA-TAAAATTAGTA
* * *
86437297 AAAAAATATAAAAATTGTAAAAAAATATAAAATATTGTA
1 AAAAAATATAAAAATAGTAAAAAATTATAAAAT-TAGTA
***
86437336 AAATTTTATAAAAATAGTAAAAAATTATAAAATT
1 AAAAAATATAAAAATAGTAAAAAATTATAAAATT
86437370 TTATAAAATC
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
36 7 0.12
37 7 0.12
38 17 0.28
39 29 0.48
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (38 bp):
AAAAAATATAAAAATAGTAAAAAATTATAAAATTAGTA
Found at i:86437351 original size:21 final size:19
Alignment explanation
Indices: 86437269--86437367 Score: 101
Period size: 19 Copynumber: 5.2 Consensus size: 19
86437259 TTAAAAAATT
*
86437269 AAAATATTAAAAAATTATTA
1 AAAATAGTAAAAAATTA-TA
* *
86437289 AAATTAG-AAAAAAATATA
1 AAAATAGTAAAAAATTATA
* *
86437307 AAAATTGTAAAAAAATATA
1 AAAATAGTAAAAAATTATA
* **
86437326 AAATATTGTAAAATTTTATA
1 AAA-ATAGTAAAAAATTATA
86437346 AAAATAGTAAAAAATTATA
1 AAAATAGTAAAAAATTATA
86437365 AAA
1 AAA
86437368 TTTTATAAAA
Statistics
Matches: 66, Mismatches: 11, Indels: 5
0.80 0.13 0.06
Matches are distributed among these distances:
18 7 0.11
19 38 0.58
20 21 0.32
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (19 bp):
AAAATAGTAAAAAATTATA
Found at i:86437368 original size:29 final size:29
Alignment explanation
Indices: 86437241--86437393 Score: 120
Period size: 29 Copynumber: 5.3 Consensus size: 29
86437231 ACAAAAAAAT
* *
86437241 AAAAACTAT-AAATTTTATTTAAAAA-ATTA
1 AAAAATTATAAAATTTTA--TAAAAATAGTA
* * * *
86437270 AAATATTAAAAAATTAT-TAAAATTAG-A
1 AAAAATTATAAAATTTTATAAAAATAGTA
* * *
86437297 AAAAAATATAAAAATTGTAAAAAAATA-TA
1 AAAAATTAT-AAAATTTTATAAAAATAGTA
* *
86437326 AAATATTGTAAAATTTTATAAAAATAGTA
1 AAAAATTATAAAATTTTATAAAAATAGTA
*
86437355 AAAAATTATAAAATTTTAT-AAAATCGTA
1 AAAAATTATAAAATTTTATAAAAATAGTA
86437383 AGAAAATTATA
1 A-AAAATTATA
86437394 CAAAATATAA
Statistics
Matches: 97, Mismatches: 20, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
27 12 0.12
28 32 0.33
29 47 0.48
30 6 0.06
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.33
Consensus pattern (29 bp):
AAAAATTATAAAATTTTATAAAAATAGTA
Done.