Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 260 of 349
Found at i:86437373 original size:10 final size:10
Alignment explanation
Indices: 86437268--86437378 Score: 72
Period size: 10 Copynumber: 11.6 Consensus size: 10
86437258 TTTAAAAAAT
86437268 TAAAATATTA
1 TAAAATATTA
86437278 -AAAA-ATTA
1 TAAAATATTA
*
86437286 TTAAA-ATTA
1 TAAAATATTA
* * *
86437295 GAAAAAAATA
1 TAAAATATTA
*
86437305 TAAAA-ATTG
1 TAAAATATTA
* *
86437314 TAAAAAAATA
1 TAAAATATTA
*
86437324 TAAAATATTG
1 TAAAATATTA
*
86437334 TAAAATTTTA
1 TAAAATATTA
86437344 TAAAA-A-TA
1 TAAAATATTA
*
86437352 GTAAAAAATTA
1 -TAAAATATTA
*
86437363 TAAAATTTTA
1 TAAAATATTA
86437373 TAAAAT
1 TAAAAT
86437379 CGTAAGAAAA
Statistics
Matches: 78, Mismatches: 17, Indels: 12
0.73 0.16 0.11
Matches are distributed among these distances:
8 6 0.08
9 26 0.33
10 44 0.56
11 2 0.03
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (10 bp):
TAAAATATTA
Found at i:86437389 original size:39 final size:39
Alignment explanation
Indices: 86437303--86437382 Score: 106
Period size: 39 Copynumber: 2.1 Consensus size: 39
86437293 TAGAAAAAAA
* * **
86437303 TATAAAAATTGTAAAAAAATATAAAATATTGTAAAATTT
1 TATAAAAATAGTAAAAAAATATAAAATATTATAAAATCG
* *
86437342 TATAAAAATAGTAAAAAATTATAAAATTTTATAAAATCG
1 TATAAAAATAGTAAAAAAATATAAAATATTATAAAATCG
86437381 TA
1 TA
86437383 AGAAAATTAT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.59, C:0.01, G:0.05, T:0.35
Consensus pattern (39 bp):
TATAAAAATAGTAAAAAAATATAAAATATTATAAAATCG
Found at i:86437402 original size:28 final size:27
Alignment explanation
Indices: 86437342--86437404 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 27
86437332 TGTAAAATTT
86437342 TATA-AAAATAGTAAAAAATTATAAAA
1 TATATAAAATAGTAAAAAATTATAAAA
* *
86437368 TTTTATAAAATCGTAAGAAAATTATACAAA
1 -TATATAAAATAGTAA-AAAATTATA-AAA
86437398 -ATATAAA
1 TATATAAA
86437405 GAAATATAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
27 3 0.10
28 15 0.50
29 9 0.30
30 3 0.10
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (27 bp):
TATATAAAATAGTAAAAAATTATAAAA
Found at i:86437607 original size:19 final size:19
Alignment explanation
Indices: 86437585--86437691 Score: 73
Period size: 18 Copynumber: 5.7 Consensus size: 19
86437575 TTTTTATGAC
86437585 TTTTATAAAATTTTACAAT
1 TTTTATAAAATTTTACAAT
***
86437604 TTTT-TATTTTTTTACAAT
1 TTTTATAAAATTTTACAAT
* *
86437622 TTTTATAGAAA--ATATAAT
1 TTTTATA-AAATTTTACAAT
*
86437640 TTTTA-ATAAATTTTAAAAT
1 TTTTATA-AAATTTTACAAT
86437659 TTTTATTAAAATTTAATA-AAT
1 TTTTA-TAAAATTT--TACAAT
86437680 TTTT-TAAAATTT
1 TTTTATAAAATTT
86437692 ATTTTTATTA
Statistics
Matches: 69, Mismatches: 11, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
17 4 0.06
18 25 0.36
19 24 0.35
20 6 0.09
21 8 0.12
22 2 0.03
ACGTcount: A:0.41, C:0.02, G:0.01, T:0.56
Consensus pattern (19 bp):
TTTTATAAAATTTTACAAT
Found at i:86437653 original size:10 final size:10
Alignment explanation
Indices: 86437635--86437682 Score: 53
Period size: 10 Copynumber: 4.9 Consensus size: 10
86437625 TATAGAAAAT
*
86437635 ATAATTTTTA
1 ATAAATTTTA
86437645 ATAAATTTTA
1 ATAAATTTTA
*
86437655 A-AATTTTTA
1 ATAAATTTTA
* *
86437664 TTAAAATTTA
1 ATAAATTTTA
86437674 ATAAATTTT
1 ATAAATTTT
86437683 TTAAAATTTA
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
9 7 0.23
10 23 0.77
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (10 bp):
ATAAATTTTA
Found at i:86437692 original size:19 final size:19
Alignment explanation
Indices: 86437632--86437692 Score: 61
Period size: 19 Copynumber: 3.1 Consensus size: 19
86437622 TTTTATAGAA
*
86437632 AATATAATTTTTAATAAATTTT
1 AATA-AATTTTT--TAAAATTT
*
86437654 AA-AATTTTTATTAAAATTT
1 AATAAATTTT-TTAAAATTT
86437673 AATAAATTTTTTAAAATTT
1 AATAAATTTTTTAAAATTT
86437692 A
1 A
86437693 TTTTTATTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
19 19 0.56
20 11 0.32
21 2 0.06
22 2 0.06
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (19 bp):
AATAAATTTTTTAAAATTT
Found at i:86443552 original size:3 final size:3
Alignment explanation
Indices: 86443544--86443581 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
86443534 TTAAATGAAT
*
86443544 TTA TTA TTA TGA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
86443582 TGCATGTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:86447137 original size:42 final size:42
Alignment explanation
Indices: 86447078--86447198 Score: 152
Period size: 43 Copynumber: 2.9 Consensus size: 42
86447068 TAGGGTTAGT
* * *
86447078 TGAGATTACGTGTAAGACCATATTTGAGATATGACATCGATA
1 TGAGATTACATGTAAGACCATATCTGGGATATGACATCGATA
* * * *
86447120 TGAGATTTCATGTAAGACCATAGCTGGGCTATTGGCATCGATA
1 TGAGATTACATGTAAGACCATATCTGGGATA-TGACATCGATA
**
86447163 TGAGATCCCATGTAAGACCATATCTGGGATATGACA
1 TGAGATTACATGTAAGACCATATCTGGGATATGACA
86447199 ATGGTATGGT
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 29 0.44
43 37 0.56
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (42 bp):
TGAGATTACATGTAAGACCATATCTGGGATATGACATCGATA
Found at i:86462581 original size:48 final size:48
Alignment explanation
Indices: 86462505--86462604 Score: 164
Period size: 48 Copynumber: 2.1 Consensus size: 48
86462495 CTCACACACT
* * *
86462505 AAGTGCTAATATCATGGCCCGAAGCCAAATCAATGTATCTCCCACCCG
1 AAGTACTAATATCATGGCCCAAAGCCAAATCAATGAATCTCCCACCCG
*
86462553 AAGTACTAATATCATGGCCCAAAGCCAAATCAATGAATCTCGCACCCG
1 AAGTACTAATATCATGGCCCAAAGCCAAATCAATGAATCTCCCACCCG
86462601 AAGT
1 AAGT
86462605 GTAACACCCC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.35, C:0.29, G:0.16, T:0.20
Consensus pattern (48 bp):
AAGTACTAATATCATGGCCCAAAGCCAAATCAATGAATCTCCCACCCG
Found at i:86462994 original size:5 final size:5
Alignment explanation
Indices: 86462986--86463011 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
86462976 TATTTATTTC
86462986 ATAAT ATAAT ATAAT ATAAT ATAAT A
1 ATAAT ATAAT ATAAT ATAAT ATAAT A
86463012 ATTTTATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
ATAAT
Found at i:86463991 original size:21 final size:20
Alignment explanation
Indices: 86463967--86464005 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
86463957 CTTGTATAAC
86463967 TATCATCAAACATTCAAAATT
1 TATCATCAAACA-TCAAAATT
*
86463988 TATCATTAAACATCAAAA
1 TATCATCAAACATCAAAA
86464006 CACATGCTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.51, C:0.18, G:0.00, T:0.31
Consensus pattern (20 bp):
TATCATCAAACATCAAAATT
Found at i:86474243 original size:30 final size:30
Alignment explanation
Indices: 86474209--86474269 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
86474199 TCGTTAACTC
*
86474209 AAACTTTGGCAAAATTATAATTTTTCCCCT
1 AAACTTTGGCAAAATTACAATTTTTCCCCT
* * * *
86474239 AAACTTTTGCATATTTACACTTTTTCCCCT
1 AAACTTTGGCAAAATTACAATTTTTCCCCT
86474269 A
1 A
86474270 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.05, T:0.43
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTTCCCCT
Found at i:86478978 original size:47 final size:47
Alignment explanation
Indices: 86478909--86479222 Score: 196
Period size: 47 Copynumber: 6.7 Consensus size: 47
86478899 GGTATAATGC
*
86478909 CGATGCCATGTCCCAGCCATGGTCTTACACTAG-CTTATCCATCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGACTTAT-CATCAAGT
* *
86478956 CGATGCCATGTCCCAGACATGGTCTTACACT-GAC-TATTGAAATCGAGAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGACTTA-T--CATCAAG-T
* * * ** *
86479005 CGACGCCATGTCTCAGACATGGTCTTACACTGACACCTCTAT-A-CGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACT-AGA-CT-TATCATCAAGT
* * * *
86479053 CGATGCCATGTCCCAAACATGGTCTTACATTGAGAC--ATC-TCGTAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACT-AGACTTATCATC-AAGT
* *
86479099 CGATG-CATGTCCAAGACAT-GTCTTACACTAG-CTTA-CATCTCGAAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGACTTATCA--TC-AAGT
86479145 CGAATG-CATGTCCCAGACAT-GTCTTACACTAG-CTCTCATC-TCAA-T
1 CG-ATGCCATGTCCCAGACATGGTCTTACACTAGACT-T-ATCATCAAGT
*
86479190 GCTGATGCCATGTCTCAGACAT-GTCTTACACTA
1 -C-GATGCCATGTCCCAGACATGGTCTTACACTA
86479223 ACACACAAAA
Statistics
Matches: 220, Mismatches: 23, Indels: 48
0.76 0.08 0.16
Matches are distributed among these distances:
42 1 0.00
43 3 0.01
44 12 0.05
45 13 0.06
46 24 0.11
47 90 0.41
48 36 0.16
49 34 0.15
50 2 0.01
51 1 0.00
52 1 0.00
53 1 0.00
54 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGACTTATCATCAAGT
Found at i:86479080 original size:48 final size:47
Alignment explanation
Indices: 86478906--86479127 Score: 135
Period size: 49 Copynumber: 4.7 Consensus size: 47
86478896 TAGGGTATAA
** * *
86478906 TGCCGATGCCATGTCCCAGCCATGGTCTTACACT-AGCTTA-TCCATCAAG
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTGA-C--ACTCTAT-ACG
* *
86478955 T--CGATGCCATGTCCCAGACATGGTCTTACACTGACTA-T-TGAAATCG
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTGAC-ACTCT-ATA-CG
* * * * *
86479001 AGATCGACGCCATGTCTCAGACATGGTCTTACACTGACACCTCTATACG
1 TG-CCGATGCCATGTCCCAAACATGGTCTTACACTGACA-CTCTATACG
* *
86479050 TGCCGATGCCATGTCCCAAACATGGTCTTACATTGAGACATC--T-CG
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTGACAC-TCTATACG
86479095 TAGCCGATG-CATGT-CCAAGACAT-GTCTTACACT
1 T-GCCGATGCCATGTCCCAA-ACATGGTCTTACACT
86479128 AGCTTACATC
Statistics
Matches: 145, Mismatches: 16, Indels: 29
0.76 0.08 0.15
Matches are distributed among these distances:
44 13 0.09
45 13 0.09
46 13 0.09
47 32 0.22
48 34 0.23
49 36 0.25
50 3 0.02
51 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (47 bp):
TGCCGATGCCATGTCCCAAACATGGTCTTACACTGACACTCTATACG
Found at i:86495060 original size:49 final size:48
Alignment explanation
Indices: 86494988--86495162 Score: 251
Period size: 49 Copynumber: 3.5 Consensus size: 48
86494978 CTGGTGCGCA
86494988 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCTGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTAT-CTGTACACG
* * * * * *
86495037 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGATACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCTG-TACACG
86495088 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCT-GTACACG
86495137 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
86495163 CGTGACCTCA
Statistics
Matches: 110, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
49 64 0.58
50 9 0.08
51 37 0.34
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (48 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGTACACG
Found at i:86495142 original size:100 final size:100
Alignment explanation
Indices: 86494984--86495167 Score: 352
Period size: 100 Copynumber: 1.8 Consensus size: 100
86494974 CTATCTGGTG
86494984 CGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCTGTACACGTAGTAGCCTGCA
1 CGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCTGTACACGTAGTAGCCTGCA
86495049 CTTAGTACTACACACGTGATCGAAGTTATCAGATA
66 CTTAGTACTACACACGTGATCGAAGTTATCAGATA
86495084 CGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTAT-CTGGTACACGTAGTAGCCTGC
1 CGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCT-GTACACGTAGTAGCCTGC
86495148 ACTTAGTACTACACACGTGA
65 ACTTAGTACTACACACGTGA
86495168 CCTCACAATA
Statistics
Matches: 83, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
99 2 0.02
100 81 0.98
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (100 bp):
CGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCTGTACACGTAGTAGCCTGCA
CTTAGTACTACACACGTGATCGAAGTTATCAGATA
Found at i:86501922 original size:43 final size:43
Alignment explanation
Indices: 86501808--86501922 Score: 137
Period size: 43 Copynumber: 2.7 Consensus size: 43
86501798 TACAATGCCA
* * *
86501808 ATGTCCCAAACGTGGTCTTACATGT-AATCAAATATCGATGCT
1 ATGTCCCAAACATGGTCTTACACGTAAATCAAATATCGATGCG
* * *
86501850 ACTGTCCCAGATAGGGTCTTACACG-AAATCAAATA-CGATGTCG
1 A-TGTCCCAAACATGGTCTTACACGTAAATCAAATATCGATG-CG
86501893 ATGTCCCAAACATGGTCTTACACGTAAATC
1 ATGTCCCAAACATGGTCTTACACGTAAATC
86501923 TCAAATTGAT
Statistics
Matches: 60, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
42 26 0.43
43 34 0.57
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.27
Consensus pattern (43 bp):
ATGTCCCAAACATGGTCTTACACGTAAATCAAATATCGATGCG
Found at i:86503279 original size:22 final size:22
Alignment explanation
Indices: 86503253--86503297 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
86503243 ATTATGTGTA
86503253 TTAATTCATAATATAA-TTAATT
1 TTAATT-ATAATATAATTTAATT
* *
86503275 TTAATTTTAATCTAATTTAATT
1 TTAATTATAATATAATTTAATT
86503297 T
1 T
86503298 GGGTTAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (22 bp):
TTAATTATAATATAATTTAATT
Found at i:86503717 original size:24 final size:25
Alignment explanation
Indices: 86503673--86503724 Score: 72
Period size: 24 Copynumber: 2.1 Consensus size: 25
86503663 ACCCTTCTCA
*
86503673 TCTCTTCACTTCTCTCTCATTTTTC
1 TCTCTTCACTTCTCTCTCATTGTTC
86503698 TCTCTTCA-TTCTCT-TCCATTGTTC
1 TCTCTTCACTTCTCTCT-CATTGTTC
86503722 TCT
1 TCT
86503725 ATTTTCTTCC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
23 1 0.04
24 16 0.64
25 8 0.32
ACGTcount: A:0.08, C:0.35, G:0.02, T:0.56
Consensus pattern (25 bp):
TCTCTTCACTTCTCTCTCATTGTTC
Found at i:86517806 original size:25 final size:25
Alignment explanation
Indices: 86517778--86517827 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
86517768 CGAAATAGGG
86517778 TTACGGAGCATTACCATAAAATTGT
1 TTACGGAGCATTACCATAAAATTGT
86517803 TTACGGAGCATTACCATAAAATTGT
1 TTACGGAGCATTACCATAAAATTGT
86517828 AACTTAAATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (25 bp):
TTACGGAGCATTACCATAAAATTGT
Found at i:86525460 original size:12 final size:12
Alignment explanation
Indices: 86525443--86525484 Score: 68
Period size: 12 Copynumber: 3.5 Consensus size: 12
86525433 GGACACGCGG
86525443 CCGTGTCCCA-GC
1 CCGTGT-CCATGC
86525455 CCGTGTCCATGC
1 CCGTGTCCATGC
86525467 CCGTGTCCATGC
1 CCGTGTCCATGC
86525479 CCGTGT
1 CCGTGT
86525485 AACTCTCTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
11 3 0.10
12 26 0.90
ACGTcount: A:0.07, C:0.43, G:0.26, T:0.24
Consensus pattern (12 bp):
CCGTGTCCATGC
Found at i:86526541 original size:40 final size:40
Alignment explanation
Indices: 86526486--86526623 Score: 213
Period size: 40 Copynumber: 3.5 Consensus size: 40
86526476 TAAACATGGA
*
86526486 CACGTATGTGCAATCAGTGGTACCAAAGTACAAATAGGGG
1 CACGTATGTGCAATCAGGGGTACCAAAGTACAAATAGGGG
*
86526526 CACGTATGTGCAATCAGGGGTACCGAAGTACAAATAGGGG
1 CACGTATGTGCAATCAGGGGTACCAAAGTACAAATAGGGG
* * * *
86526566 CACATATATGCAATCAGGGGTACCAAGGTACAGATAGGGG
1 CACGTATGTGCAATCAGGGGTACCAAAGTACAAATAGGGG
*
86526606 CACGTGTGTGCAATCAGG
1 CACGTATGTGCAATCAGG
86526624 TATAAGTACC
Statistics
Matches: 88, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 88 1.00
ACGTcount: A:0.33, C:0.18, G:0.30, T:0.19
Consensus pattern (40 bp):
CACGTATGTGCAATCAGGGGTACCAAAGTACAAATAGGGG
Found at i:86526564 original size:20 final size:20
Alignment explanation
Indices: 86526504--86526565 Score: 56
Period size: 20 Copynumber: 3.1 Consensus size: 20
86526494 TGCAATCAGT
*
86526504 GGTACCAAAGTACAAATAGG
1 GGTACCGAAGTACAAATAGG
* * *
86526524 GGCA-CGTATGTGC-AATCAGG
1 GGTACCG-AAGTACAAAT-AGG
86526544 GGTACCGAAGTACAAATAGG
1 GGTACCGAAGTACAAATAGG
86526564 GG
1 GG
86526566 CACATATATG
Statistics
Matches: 31, Mismatches: 7, Indels: 8
0.67 0.15 0.17
Matches are distributed among these distances:
19 4 0.13
20 22 0.71
21 5 0.16
ACGTcount: A:0.35, C:0.16, G:0.32, T:0.16
Consensus pattern (20 bp):
GGTACCGAAGTACAAATAGG
Found at i:86528797 original size:16 final size:17
Alignment explanation
Indices: 86528776--86528808 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
86528766 AAACACAGTG
86528776 GTAAAAT-AATATAGAA
1 GTAAAATCAATATAGAA
*
86528792 GTAAAATCCATATAGAA
1 GTAAAATCAATATAGAA
86528809 CTACACTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.58, C:0.06, G:0.12, T:0.24
Consensus pattern (17 bp):
GTAAAATCAATATAGAA
Found at i:86528861 original size:45 final size:47
Alignment explanation
Indices: 86528808--86528918 Score: 127
Period size: 49 Copynumber: 2.4 Consensus size: 47
86528798 TCCATATAGA
* * *
86528808 ACTACACTTCTTTTATTT-TATT-TTAGAATAAGGTTTTTCAACCTT
1 ACTACACTTCTTCTATTTATATTGTTAGAACAAGGTGTTTCAACCTT
* **
86528853 ATTACACTTAATCTATTTGATATTGGTTAGAACAAGGTGTTTCAACCTT
1 ACTACACTTCTTCTATTT-ATATT-GTTAGAACAAGGTGTTTCAACCTT
*
86528902 ACTACACTCCTTCTATT
1 ACTACACTTCTTCTATT
86528919 AGAATATAGT
Statistics
Matches: 52, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
45 14 0.27
47 4 0.08
49 34 0.65
ACGTcount: A:0.28, C:0.18, G:0.09, T:0.45
Consensus pattern (47 bp):
ACTACACTTCTTCTATTTATATTGTTAGAACAAGGTGTTTCAACCTT
Found at i:86530791 original size:41 final size:40
Alignment explanation
Indices: 86530648--86530800 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
86530638 TATAACCACT
* * * * *
86530648 CACACAAGACCTTCGGGTCTTAACCCGGATATGGTCACTAG
1 CACAAAAG-CCTTCGGGACTTAGCCCGGATATAGTCGCTAG
* *
86530689 CATAAATGCCTTCGGGACTTAGCCCGGATATAGTCGCTAG
1 CACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTAG
* ** * * *
86530729 CACAAATGCCTT-TAGATCTTAGTCCGGATGTAGTCGCTTAT
1 CACAAAAGCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAG
86530770 CACAAAAGCCTTCGGGACTTAGCCCGGATAT
1 CACAAAAGCCTTCGGGACTTAGCCCGGATAT
86530801 CATTCGAGTA
Statistics
Matches: 91, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 2 0.02
40 57 0.63
41 30 0.33
42 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTAG
Found at i:86541204 original size:17 final size:17
Alignment explanation
Indices: 86541164--86541210 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
86541154 CAGAAGCTCG
86541164 ATAAAATAATTATAATA
1 ATAAAATAATTATAATA
86541181 A-AGAAATAA-TATTAATA
1 ATA-AAATAATTA-TAATA
*
86541198 ATAAAATTATTAT
1 ATAAAATAATTAT
86541211 TTAAATTATA
Statistics
Matches: 25, Mismatches: 1, Indels: 8
0.74 0.03 0.24
Matches are distributed among these distances:
16 3 0.12
17 19 0.76
18 3 0.12
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (17 bp):
ATAAAATAATTATAATA
Found at i:86543619 original size:14 final size:13
Alignment explanation
Indices: 86543592--86543617 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
86543582 TAAAAGTATT
86543592 TAATTTTTTAAAA
1 TAATTTTTTAAAA
86543605 TAATTTTTTAAAA
1 TAATTTTTTAAAA
86543618 ATTTTAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TAATTTTTTAAAA
Found at i:86546514 original size:21 final size:21
Alignment explanation
Indices: 86546488--86546528 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
86546478 GCTTTTCTGC
86546488 TGCTGGGTTGATCTTCATTTT
1 TGCTGGGTTGATCTTCATTTT
86546509 TGCTGGGTTGATCTTCATTT
1 TGCTGGGTTGATCTTCATTT
86546529 GTTTGCTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.10, C:0.15, G:0.24, T:0.51
Consensus pattern (21 bp):
TGCTGGGTTGATCTTCATTTT
Found at i:86551071 original size:28 final size:28
Alignment explanation
Indices: 86551039--86551096 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
86551029 TATCTTCCAT
86551039 TAAAATTCATTCTTACAAACCAATCAAG
1 TAAAATTCATTCTTACAAACCAATCAAG
86551067 TAAAATTCATTCTTACAAACCAATCAAG
1 TAAAATTCATTCTTACAAACCAATCAAG
86551095 TA
1 TA
86551097 TGATTAGTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.47, C:0.21, G:0.03, T:0.29
Consensus pattern (28 bp):
TAAAATTCATTCTTACAAACCAATCAAG
Found at i:86552198 original size:14 final size:14
Alignment explanation
Indices: 86552181--86552223 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
86552171 ATAAAGTAAT
86552181 TAAAATAAAA-GAAA
1 TAAAA-AAAATGAAA
86552195 TAAAAAAAATGAAA
1 TAAAAAAAATGAAA
*
86552209 TAAAGAAAAAGGAAA
1 TAAA-AAAAATGAAA
86552224 GAAAGAAGGC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 4 0.15
14 13 0.50
15 9 0.35
ACGTcount: A:0.77, C:0.00, G:0.12, T:0.12
Consensus pattern (14 bp):
TAAAAAAAATGAAA
Found at i:86552217 original size:15 final size:14
Alignment explanation
Indices: 86552187--86552230 Score: 54
Period size: 15 Copynumber: 3.1 Consensus size: 14
86552177 TAATTAAAAT
86552187 AAAAGAAATAAA-A
1 AAAAGAAATAAAGA
86552200 AAAATGAAATAAAGA
1 AAAA-GAAATAAAGA
*
86552215 AAAAGGAAAGAAAGA
1 AAAA-GAAATAAAGA
86552230 A
1 A
86552231 GGCCACGGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
13 4 0.15
14 8 0.30
15 15 0.56
ACGTcount: A:0.77, C:0.00, G:0.16, T:0.07
Consensus pattern (14 bp):
AAAAGAAATAAAGA
Found at i:86557417 original size:16 final size:16
Alignment explanation
Indices: 86557396--86557430 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
86557386 ATGAATCGGT
*
86557396 AAAAGTTGAAATGCCG
1 AAAAGTCGAAATGCCG
86557412 AAAAGTCGAAATGCCG
1 AAAAGTCGAAATGCCG
86557428 AAA
1 AAA
86557431 TTTGGGCTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.49, C:0.14, G:0.23, T:0.14
Consensus pattern (16 bp):
AAAAGTCGAAATGCCG
Found at i:86557678 original size:29 final size:28
Alignment explanation
Indices: 86557645--86557759 Score: 124
Period size: 29 Copynumber: 4.0 Consensus size: 28
86557635 GCATGAGTGT
*
86557645 AATATGATTTGGGCCTAATGGGCCATATG
1 AATATGAATTGGGCC-AATGGGCCATATG
* *
86557674 AATATGAATTGGGCCTAGTGGGCCATAAG
1 AATATGAATTGGGCC-AATGGGCCATATG
* *
86557703 AATATGAACTGGGCCAGATGGGTCATATG
1 AATATGAATTGGGCCA-ATGGGCCATATG
* *
86557732 AATGTG-ATTGGGACCAGTGGGCCATATG
1 AATATGAATTGGG-CCAATGGGCCATATG
86557760 CATGTATGTA
Statistics
Matches: 73, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
28 16 0.22
29 57 0.78
ACGTcount: A:0.29, C:0.14, G:0.31, T:0.26
Consensus pattern (28 bp):
AATATGAATTGGGCCAATGGGCCATATG
Found at i:86560602 original size:19 final size:19
Alignment explanation
Indices: 86560574--86560619 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
86560564 TAGTTGGAAA
* *
86560574 TTTCGAGGACGAAATTTCT
1 TTTCGGGGACAAAATTTCT
86560593 TTTCGGGGACAAAATTTCT
1 TTTCGGGGACAAAATTTCT
86560612 TTTCGGGG
1 TTTCGGGG
86560620 GGTAGAGTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.22, C:0.15, G:0.26, T:0.37
Consensus pattern (19 bp):
TTTCGGGGACAAAATTTCT
Found at i:86561980 original size:8 final size:8
Alignment explanation
Indices: 86561964--86561998 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
86561954 GCCAAAAGCT
86561964 GAAATGCC
1 GAAATGCC
*
86561972 GAAAAGCC
1 GAAATGCC
86561980 GAAATGCC
1 GAAATGCC
86561988 GAAATGCC
1 GAAATGCC
86561996 GAA
1 GAA
86561999 GAGCTGAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.43, C:0.23, G:0.26, T:0.09
Consensus pattern (8 bp):
GAAATGCC
Found at i:86562007 original size:16 final size:16
Alignment explanation
Indices: 86561957--86561998 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
86561947 ATGAATCGCC
*
86561957 AAAAGCTGAAATGCCG
1 AAAAGCCGAAATGCCG
86561973 AAAAGCCGAAATGCCG
1 AAAAGCCGAAATGCCG
*
86561989 AAATGCCGAA
1 AAAAGCCGAA
86561999 GAGCTGAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.45, C:0.21, G:0.24, T:0.10
Consensus pattern (16 bp):
AAAAGCCGAAATGCCG
Found at i:86562255 original size:29 final size:29
Alignment explanation
Indices: 86562222--86562336 Score: 144
Period size: 29 Copynumber: 4.0 Consensus size: 29
86562212 GTATGAGTAT
86562222 AATATGAATTGGGCCTAATGGGCCATATG
1 AATATGAATTGGGCCTAATGGGCCATATG
* *
86562251 AATATGAATTGGGCCTAGTGGGCCATAAG
1 AATATGAATTGGGCCTAATGGGCCATATG
* * *
86562280 AATTTGAACTAGGCC-AGATGGGCCATATG
1 AATATGAATTGGGCCTA-ATGGGCCATATG
* *
86562309 AATGTG-ATTGGGCCCAATGGGCCATATG
1 AATATGAATTGGGCCTAATGGGCCATATG
86562337 CATGTTTGTA
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
28 19 0.26
29 55 0.74
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.25
Consensus pattern (29 bp):
AATATGAATTGGGCCTAATGGGCCATATG
Found at i:86565951 original size:45 final size:45
Alignment explanation
Indices: 86565900--86565991 Score: 157
Period size: 45 Copynumber: 2.0 Consensus size: 45
86565890 GCAAGTGATC
**
86565900 ACAATGTAGAAGTTGTCCTTCTGCAAAGAATCAGAAAGGAACCCT
1 ACAATGTAGAAGTTGTCCTTAGGCAAAGAATCAGAAAGGAACCCT
*
86565945 ACAATGTAGAAGTTGTCCTTAGGCAAAGAATCAGGAAGGAACCCT
1 ACAATGTAGAAGTTGTCCTTAGGCAAAGAATCAGAAAGGAACCCT
86565990 AC
1 AC
86565992 GCATCTCTTG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.21
Consensus pattern (45 bp):
ACAATGTAGAAGTTGTCCTTAGGCAAAGAATCAGAAAGGAACCCT
Found at i:86567637 original size:14 final size:14
Alignment explanation
Indices: 86567618--86567644 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
86567608 AATTCTCATA
86567618 TTTAATTTATTTAT
1 TTTAATTTATTTAT
86567632 TTTAATTTATTTA
1 TTTAATTTATTTA
86567645 ACTTTGAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
TTTAATTTATTTAT
Found at i:86571904 original size:25 final size:24
Alignment explanation
Indices: 86571875--86571930 Score: 67
Period size: 25 Copynumber: 2.3 Consensus size: 24
86571865 ATGAATAGAA
*
86571875 TTTTTAATAAAATTATTAATTTACT
1 TTTTTAATAAAATAATTAATTTA-T
* * *
86571900 TTTTTTATGAAATAATTTATTTAT
1 TTTTTAATAAAATAATTAATTTAT
86571924 TTTTTAA
1 TTTTTAA
86571931 AATAAACAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
24 7 0.27
25 19 0.73
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (24 bp):
TTTTTAATAAAATAATTAATTTAT
Found at i:86571916 original size:21 final size:21
Alignment explanation
Indices: 86571891--86571935 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
86571881 ATAAAATTAT
*
86571891 TAATTTACTTT-TTTTATGAAA
1 TAATTTA-TTTATTTTATAAAA
*
86571912 TAATTTATTTATTTTTTAAAA
1 TAATTTATTTATTTTATAAAA
86571933 TAA
1 TAA
86571936 ACAAAATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 3 0.14
21 18 0.86
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (21 bp):
TAATTTATTTATTTTATAAAA
Found at i:86573099 original size:20 final size:21
Alignment explanation
Indices: 86573065--86573107 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
86573055 AATTTACAAT
86573065 TTATAAAAAAACTCAAAAAAA
1 TTATAAAAAAACTCAAAAAAA
* *
86573086 TTAT-AAAAAGCTCATAAAAA
1 TTATAAAAAAACTCAAAAAAA
86573106 TT
1 TT
86573108 CAAAACAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.63, C:0.09, G:0.02, T:0.26
Consensus pattern (21 bp):
TTATAAAAAAACTCAAAAAAA
Found at i:86573675 original size:15 final size:16
Alignment explanation
Indices: 86573632--86573677 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 16
86573622 TGTTTTCCAT
86573632 CCATT-TAATTTTCTA
1 CCATTCTAATTTTCTA
* *
86573647 CCCTTACAAATTTTC-A
1 CCATT-CTAATTTTCTA
86573663 CCATTCTAATTTTCT
1 CCATTCTAATTTTCT
86573678 TTCTATCCTA
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
15 12 0.50
16 5 0.21
17 7 0.29
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.48
Consensus pattern (16 bp):
CCATTCTAATTTTCTA
Found at i:86574979 original size:20 final size:18
Alignment explanation
Indices: 86574936--86574968 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
86574926 TTAATAAAAA
86574936 ATTT-AACTATATTAATT
1 ATTTGAACTATATTAATT
86574953 ATTTGAACTA-ATTAAT
1 ATTTGAACTATATTAAT
86574969 AATATTATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.42, C:0.06, G:0.03, T:0.48
Consensus pattern (18 bp):
ATTTGAACTATATTAATT
Found at i:86580983 original size:126 final size:125
Alignment explanation
Indices: 86580746--86581261 Score: 615
Period size: 125 Copynumber: 4.1 Consensus size: 125
86580736 AGCACCCTTG
* * * * *
86580746 ACTATTGTAGAAAAAGTGTGTCGACATGAGAG-TTTTTTCATCAATTTTGCTGATAGTGCATCCT
1 ACTACTGTAGAAAAAGAGCGTCGACATGGGAGCTTTTTTCAT-AATTTTGCTGACAGTGCATCCT
* * * * *
86580810 GCTTGAAGCGTTTTTGACTCTATTTGTTCAGAACCATCTTTTTAAAATTATTTTTTCAGGA
65 GCTTGAAGCATTTTTGACACTATTTGTTCAGAACCGTCTTCTCAAAATTATTTTTTCAGGA
* *
86580871 ACTACTGTAGAAAAAGAGCGTCGATATGGGAGCTTTTTTCATCAATTTTGCTGACAGTGCATCAT
1 ACTACTGTAGAAAAAGAGCGTCGACATGGGAGCTTTTTTCAT-AATTTTGCTGACAGTGCATCCT
* *
86580936 GCCTGAAGCATTTTTGACACTATTTGTTCAGAACCGTCTTCTCAAAATTA-TTTTTCAAGA
65 GCTTGAAGCATTTTTGACACTATTTGTTCAGAACCGTCTTCTCAAAATTATTTTTTCAGGA
* * * ** *
86580996 ACTACTATAGAAAAATAGCGTCCACATGGGAGCTTTTTTTGGTAATTTTGTTGACAGTGCATCCT
1 ACTACTGTAGAAAAAGAGCGTCGACATGGGAGC-TTTTTTCATAATTTTGCTGACAGTGCATCCT
* ** * ** *
86581061 ACTTGAAGCGCTTTTGACACTATTTGTTCATAAATGTCTTTTCAAAATTATTTTTT-AGGA
65 GCTTGAAGCATTTTTGACACTATTTGTTCAGAACCGTCTTCTCAAAATTATTTTTTCAGGA
* * * * * * * * *
86581121 ATTACTGTAGAAAAAGAACGTCTACGTGTGAGCTTTTTTCAGTATTTTTACTGATAATGCATCCT
1 ACTACTGTAGAAAAAGAGCGTCGACATGGGAGCTTTTTTCA-TAATTTTGCTGACAGTGCATCCT
* * *
86581186 GCTTGAAGCATTTTTTACACTATTTGTTTAGAACCGTATTCTCAAAATTATTTTTTCAGGA
65 GCTTGAAGCATTTTTGACACTATTTGTTCAGAACCGTCTTCTCAAAATTATTTTTTCAGGA
*
86581247 ACCACTGTAGAAAAA
1 ACTACTGTAGAAAAA
86581262 AAATCCTTAT
Statistics
Matches: 329, Mismatches: 57, Indels: 9
0.83 0.14 0.02
Matches are distributed among these distances:
124 6 0.02
125 220 0.67
126 103 0.31
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.39
Consensus pattern (125 bp):
ACTACTGTAGAAAAAGAGCGTCGACATGGGAGCTTTTTTCATAATTTTGCTGACAGTGCATCCTG
CTTGAAGCATTTTTGACACTATTTGTTCAGAACCGTCTTCTCAAAATTATTTTTTCAGGA
Found at i:86581359 original size:34 final size:33
Alignment explanation
Indices: 86581317--86581428 Score: 127
Period size: 34 Copynumber: 3.4 Consensus size: 33
86581307 CACAATATTC
86581317 TTTTTTAAAAAAACTAAACCCTAATTTAATTAA
1 TTTTTTAAAAAAACTAAACCCTAATTTAATTAA
* * * *
86581350 TTTTCTTAAAAACACTAAACCCCAGTTTAATTTA
1 TTTT-TTAAAAAAACTAAACCCTAATTTAATTAA
* ***
86581384 TTTATTTTAAATCCCTAAACCCTAATTTAATTAA
1 TTT-TTTAAAAAAACTAAACCCTAATTTAATTAA
86581418 -TTTTTAAAAAA
1 TTTTTTAAAAAA
86581429 GAACACTAAA
Statistics
Matches: 64, Mismatches: 13, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
32 6 0.09
33 6 0.09
34 51 0.80
35 1 0.02
ACGTcount: A:0.43, C:0.15, G:0.01, T:0.41
Consensus pattern (33 bp):
TTTTTTAAAAAAACTAAACCCTAATTTAATTAA
Found at i:86583758 original size:40 final size:40
Alignment explanation
Indices: 86583649--86583790 Score: 137
Period size: 40 Copynumber: 3.6 Consensus size: 40
86583639 GACTTCAAGT
* *
86583649 CGATGAGACACTGGGTGTCAAATTATTACTTCGGATATATT
1 CGATGAGACACTGGGTGTCAAATTATTACTTCGG-TTTATC
* * * *
86583690 CGATGAGGCACTAGGTG-CCAA-T-TTACTTCGGTTTAGC
1 CGATGAGACACTGGGTGTCAAATTATTACTTCGGTTTATC
* ***
86583727 CGATGAGACATTGGGTGTCAAATTATTACTTCACATTATC
1 CGATGAGACACTGGGTGTCAAATTATTACTTCGGTTTATC
* * *
86583767 CGATGAGGCATTGGGTGCCAAATT
1 CGATGAGACACTGGGTGTCAAATT
86583791 GGTGTGTTTG
Statistics
Matches: 82, Mismatches: 16, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
37 17 0.21
38 12 0.15
39 2 0.02
40 36 0.44
41 15 0.18
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.32
Consensus pattern (40 bp):
CGATGAGACACTGGGTGTCAAATTATTACTTCGGTTTATC
Found at i:86587509 original size:11 final size:11
Alignment explanation
Indices: 86587477--86587509 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
86587467 CCAATAGAAG
86587477 TTATAGAAAAA
1 TTATAGAAAAA
*
86587488 ATATAG-AAAA
1 TTATAGAAAAA
86587498 TTATAGAAAAA
1 TTATAGAAAAA
86587509 T
1 T
86587510 ATTTAAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.64, C:0.00, G:0.09, T:0.27
Consensus pattern (11 bp):
TTATAGAAAAA
Found at i:86587544 original size:18 final size:19
Alignment explanation
Indices: 86587484--86587603 Score: 95
Period size: 20 Copynumber: 6.2 Consensus size: 19
86587474 AAGTTATAGA
*
86587484 AAAAATA-TAGAAAATTAT
1 AAAAATAGTAAAAAATTAT
* * *
86587502 AGAAAAATATTTAAAATTTATT
1 --AAAAATAGTAAAAAATTA-T
86587524 AAAAATAG-AAAAAATTAT
1 AAAAATAGTAAAAAATTAT
* *
86587542 AAAAATCA--CAAAAGTTAT
1 AAAAAT-AGTAAAAAATTAT
86587560 AAAAATAGTAAAAAATTTAT
1 AAAAATAGTAAAAAA-TTAT
*
86587580 AAAAAATTGTAAAAAATTAT
1 -AAAAATAGTAAAAAATTAT
86587600 AAAA
1 AAAA
86587604 TATATAGTGA
Statistics
Matches: 82, Mismatches: 11, Indels: 15
0.76 0.10 0.14
Matches are distributed among these distances:
17 1 0.01
18 21 0.26
19 16 0.20
20 22 0.27
21 21 0.26
22 1 0.01
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.28
Consensus pattern (19 bp):
AAAAATAGTAAAAAATTAT
Found at i:86587582 original size:11 final size:10
Alignment explanation
Indices: 86587477--86587603 Score: 77
Period size: 10 Copynumber: 12.8 Consensus size: 10
86587467 CCAATAGAAG
86587477 TTATAGAAAAA
1 TTATA-AAAAA
* *
86587488 ATATAGAAAA
1 TTATAAAAAA
86587498 TTATAGAAAAA
1 TTATA-AAAAA
* *
86587509 -TATTTAAAAT
1 TTA-TAAAAAA
*
86587519 TTATTAAAAA
1 TTATAAAAAA
*
86587529 -TAGAAAAAA
1 TTATAAAAAA
86587538 TTAT-AAAAA
1 TTATAAAAAA
* * *
86587547 TCA-CAAAAG
1 TTATAAAAAA
86587556 TTAT-AAAAA
1 TTATAAAAAA
86587565 -TAGTAAAAAA
1 TTA-TAAAAAA
86587575 TTTATAAAAAA
1 -TTATAAAAAA
*
86587586 TTGTAAAAAA
1 TTATAAAAAA
86587596 TTATAAAA
1 TTATAAAA
86587604 TATATAGTGA
Statistics
Matches: 90, Mismatches: 16, Indels: 21
0.71 0.13 0.17
Matches are distributed among these distances:
8 2 0.02
9 25 0.28
10 43 0.48
11 18 0.20
12 2 0.02
ACGTcount: A:0.64, C:0.02, G:0.06, T:0.29
Consensus pattern (10 bp):
TTATAAAAAA
Found at i:86588656 original size:10 final size:10
Alignment explanation
Indices: 86588643--86588706 Score: 51
Period size: 11 Copynumber: 6.4 Consensus size: 10
86588633 ATTTATAAAA
86588643 TTTTATATTT
1 TTTTATATTT
* *
86588653 TTTTCTATAT
1 TTTTATATTT
* *
86588663 TTCTATA-TA
1 TTTTATATTT
86588672 TTTTATAATTT
1 TTTTAT-ATTT
86588683 TTTTATGATTT
1 TTTTAT-ATTT
*
86588694 TTATA-ATTT
1 TTTTATATTT
86588703 TTTT
1 TTTT
86588707 CAAATTTTTA
Statistics
Matches: 41, Mismatches: 11, Indels: 5
0.72 0.19 0.09
Matches are distributed among these distances:
9 12 0.29
10 14 0.34
11 15 0.37
ACGTcount: A:0.23, C:0.03, G:0.02, T:0.72
Consensus pattern (10 bp):
TTTTATATTT
Found at i:86588676 original size:29 final size:28
Alignment explanation
Indices: 86588641--86588703 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 28
86588631 ATATTTATAA
*
86588641 AATTTTATATTTTTTTCTAT-ATTTCTAT
1 AATTTTATAATTTTTT-TATGATTTCTAT
*
86588669 ATATTTTATAATTTTTTTATGATTTTTAT
1 A-ATTTTATAATTTTTTTATGATTTCTAT
86588698 AATTTT
1 AATTTT
86588704 TTTCAAATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
28 9 0.29
29 22 0.71
ACGTcount: A:0.27, C:0.03, G:0.02, T:0.68
Consensus pattern (28 bp):
AATTTTATAATTTTTTTATGATTTCTAT
Found at i:86588704 original size:29 final size:28
Alignment explanation
Indices: 86588634--86588802 Score: 80
Period size: 29 Copynumber: 5.8 Consensus size: 28
86588624 ATACTTAATA
* *
86588634 TTTATAAAATTTTATATTTTTTTCTATATT
1 TTTAT-AATTTTTATAATTTTTT-TATATT
*
86588664 TCTAT-ATATTTTATAATTTTTTTATGATT
1 TTTATAAT-TTTTATAATTTTTTTAT-ATT
* * * *
86588693 TTTATAATTTTTTTCAAATTTTTAATAAAT
1 TTTATAATTTTTAT-AATTTTTTTAT-ATT
** *
86588723 TTTA-AATTTTTTATTAA-AATTTAATAATT
1 TTTATAA-TTTTTA-TAATTTTTTTAT-ATT
*
86588752 TTTATAATTTTTGATAACTTTTATTA-ATT
1 TTTATAATTTTT-ATAA-TTTTTTTATATT
*
86588781 TTTAT--TTTATTATTATTTTTTT
1 TTTATAATTT-TTATAATTTTTTT
86588803 CCATATGTCA
Statistics
Matches: 109, Mismatches: 19, Indels: 26
0.71 0.12 0.17
Matches are distributed among these distances:
26 6 0.06
27 6 0.06
28 6 0.06
29 56 0.51
30 31 0.28
31 4 0.04
ACGTcount: A:0.31, C:0.02, G:0.01, T:0.65
Consensus pattern (28 bp):
TTTATAATTTTTATAATTTTTTTATATT
Found at i:86588768 original size:19 final size:18
Alignment explanation
Indices: 86588672--86588785 Score: 77
Period size: 20 Copynumber: 5.8 Consensus size: 18
86588662 TTTCTATATA
*
86588672 TTTTATAATTTTTTTATGAT
1 TTTTATAA--TTTTTATAAT
*
86588692 TTTTATAATTTTTTTCAAAT
1 TTTTATAATTTTTAT--AAT
*
86588712 TTTTAATAAATTTTA-AATT
1 TTTT-ATAATTTTTATAA-T
* *
86588731 TTTTATTAAAATTTAATAAT
1 TTTTA-T-AATTTTTATAAT
*
86588751 TTTTATAATTTTTGATAAC
1 TTTTATAATTTTT-ATAAT
86588770 TTTTATTAATTTTTAT
1 TTTTA-TAATTTTTAT
86588786 TTTATTATTA
Statistics
Matches: 77, Mismatches: 8, Indels: 19
0.74 0.08 0.18
Matches are distributed among these distances:
18 14 0.18
19 18 0.23
20 35 0.45
21 10 0.13
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (18 bp):
TTTTATAATTTTTATAAT
Found at i:86588786 original size:10 final size:9
Alignment explanation
Indices: 86588672--86588785 Score: 77
Period size: 9 Copynumber: 11.7 Consensus size: 9
86588662 TTTCTATATA
86588672 TTTTATAATTT
1 TTTTATAA--T
*
86588683 TTTTATGAT
1 TTTTATAAT
86588692 TTTTATAAT
1 TTTTATAAT
*
86588701 TTTTTTCAAAT
1 TTTTAT--AAT
*
86588712 TTTTAATAAA
1 TTTT-ATAAT
86588722 TTTTA-AATT
1 TTTTATAA-T
*
86588731 TTTTATTAAAA
1 TTTTA-T-AAT
*
86588742 TTTAATAAT
1 TTTTATAAT
86588751 TTTTATAAT
1 TTTTATAAT
*
86588760 TTTTGATAAC
1 TTTT-ATAAT
86588770 TTTTATTAAT
1 TTTTA-TAAT
86588780 TTTTAT
1 TTTTAT
86588786 TTTATTATTA
Statistics
Matches: 82, Mismatches: 12, Indels: 20
0.72 0.11 0.18
Matches are distributed among these distances:
8 2 0.02
9 36 0.44
10 23 0.28
11 18 0.22
12 3 0.04
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (9 bp):
TTTTATAAT
Found at i:86589266 original size:22 final size:22
Alignment explanation
Indices: 86589235--86589276 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
86589225 AATTCAAACA
*
86589235 AAATGTTGATTGTGCCACCATG
1 AAATGCTGATTGTGCCACCATG
*
86589257 AAATGCTGATTGTGCTACCA
1 AAATGCTGATTGTGCCACCA
86589277 CATGTATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (22 bp):
AAATGCTGATTGTGCCACCATG
Found at i:86592542 original size:18 final size:19
Alignment explanation
Indices: 86592508--86592543 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
86592498 GTACATCCCC
86592508 ACAAACAACATGAATACAA
1 ACAAACAACATGAATACAA
*
86592527 ACAAATAACA-GAATACA
1 ACAAACAACATGAATACA
86592544 GTTATTCAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.64, C:0.19, G:0.06, T:0.11
Consensus pattern (19 bp):
ACAAACAACATGAATACAA
Found at i:86596304 original size:14 final size:14
Alignment explanation
Indices: 86596285--86596336 Score: 50
Period size: 14 Copynumber: 3.5 Consensus size: 14
86596275 GATTGTAGGG
86596285 TATGAATATGCGAA
1 TATGAATATGCGAA
* **
86596299 TATGAATGATTGTAGGG
1 TATGAAT-A-TG-CGAA
86596316 TATGAATATGCGAA
1 TATGAATATGCGAA
86596330 TATGAAT
1 TATGAAT
86596337 GATTAACATG
Statistics
Matches: 29, Mismatches: 6, Indels: 6
0.71 0.15 0.15
Matches are distributed among these distances:
14 15 0.52
15 3 0.10
16 3 0.10
17 8 0.28
ACGTcount: A:0.38, C:0.04, G:0.25, T:0.33
Consensus pattern (14 bp):
TATGAATATGCGAA
Found at i:86596308 original size:31 final size:31
Alignment explanation
Indices: 86596273--86596340 Score: 136
Period size: 31 Copynumber: 2.2 Consensus size: 31
86596263 GTAAACGTGG
86596273 ATGATTGTAGGGTATGAATATGCGAATATGA
1 ATGATTGTAGGGTATGAATATGCGAATATGA
86596304 ATGATTGTAGGGTATGAATATGCGAATATGA
1 ATGATTGTAGGGTATGAATATGCGAATATGA
86596335 ATGATT
1 ATGATT
86596341 AACATGATAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.35, C:0.03, G:0.28, T:0.34
Consensus pattern (31 bp):
ATGATTGTAGGGTATGAATATGCGAATATGA
Found at i:86596321 original size:17 final size:17
Alignment explanation
Indices: 86596273--86596322 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
86596263 GTAAACGTGG
86596273 ATGATTGTAGGGTATGA
1 ATGATTGTAGGGTATGA
* **
86596290 AT-A-TG-CGAATATGA
1 ATGATTGTAGGGTATGA
86596304 ATGATTGTAGGGTATGA
1 ATGATTGTAGGGTATGA
86596321 AT
1 AT
86596323 ATGCGAATAT
Statistics
Matches: 24, Mismatches: 6, Indels: 6
0.67 0.17 0.17
Matches are distributed among these distances:
14 8 0.33
15 3 0.12
16 3 0.12
17 10 0.42
ACGTcount: A:0.34, C:0.02, G:0.30, T:0.34
Consensus pattern (17 bp):
ATGATTGTAGGGTATGA
Found at i:86599833 original size:13 final size:13
Alignment explanation
Indices: 86599817--86599848 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
86599807 TTCAACCTAA
86599817 GTGCCTAACCAAT
1 GTGCCTAACCAAT
86599830 GTGCCTAACCAAT
1 GTGCCTAACCAAT
86599843 GTGCCT
1 GTGCCT
86599849 TCATTGGCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (13 bp):
GTGCCTAACCAAT
Found at i:86602962 original size:9 final size:10
Alignment explanation
Indices: 86602921--86602963 Score: 61
Period size: 10 Copynumber: 4.4 Consensus size: 10
86602911 ATGGGACAAG
86602921 AAATCATTAA
1 AAATCATTAA
* *
86602931 AAATTAGTAA
1 AAATCATTAA
86602941 AAATCATTAA
1 AAATCATTAA
86602951 AAA-CATTAA
1 AAATCATTAA
86602960 AAAT
1 AAAT
86602964 TTGTAAAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
9 9 0.32
10 19 0.68
ACGTcount: A:0.63, C:0.07, G:0.02, T:0.28
Consensus pattern (10 bp):
AAATCATTAA
Found at i:86602995 original size:16 final size:17
Alignment explanation
Indices: 86602955--86602986 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
86602945 CATTAAAAAC
86602955 ATTA-AAAATTTGTAAA
1 ATTATAAAATTTGTAAA
86602971 ATTATAAAA-TTGTAAA
1 ATTATAAAATTTGTAAA
86602987 CTTTTAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (17 bp):
ATTATAAAATTTGTAAA
Found at i:86602996 original size:17 final size:17
Alignment explanation
Indices: 86602956--86603004 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
86602946 ATTAAAAACA
86602956 TTAAAAATTTGTAAAATT
1 TTAAAAA-TTGTAAAATT
* *
86602974 AT-AAAATTGTAAACTT
1 TTAAAAATTGTAAAATT
*
86602990 TTAAAAAATGTAAAA
1 TTAAAAATTGTAAAA
86603005 AAGATTAATA
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
16 10 0.40
17 14 0.56
18 1 0.04
ACGTcount: A:0.55, C:0.02, G:0.06, T:0.37
Consensus pattern (17 bp):
TTAAAAATTGTAAAATT
Found at i:86603311 original size:25 final size:24
Alignment explanation
Indices: 86603283--86603331 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
86603273 TAATAATTTG
* *
86603283 ATATAATTATTTAAAAATTATAAAA
1 ATATAATTAATT-AAAATAATAAAA
*
86603308 ATATAGTTAATTAAAATAATAAAA
1 ATATAATTAATTAAAATAATAAAA
86603332 TTACATTTCT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (24 bp):
ATATAATTAATTAAAATAATAAAA
Found at i:86603638 original size:9 final size:9
Alignment explanation
Indices: 86603626--86603659 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
86603616 CCATTTTACC
86603626 ATTTTTAAT
1 ATTTTTAAT
86603635 ATTTTTAAT
1 ATTTTTAAT
* *
86603644 AGTTTTAAC
1 ATTTTTAAT
86603653 ATTTTTA
1 ATTTTTA
86603660 GTTTTTTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (9 bp):
ATTTTTAAT
Found at i:86603768 original size:35 final size:35
Alignment explanation
Indices: 86603728--86603797 Score: 90
Period size: 35 Copynumber: 2.0 Consensus size: 35
86603718 CTTTTTCATA
86603728 TTTAAAATA-ATTTTAACAAATTTTTT-TTTCTAAAT
1 TTTAAAATACATTTTAAC-AATTTTTTATTT-TAAAT
* *
86603763 TTTAAAATACTTTTTTACAATTTTTTATTTTAAAT
1 TTTAAAATACATTTTAACAATTTTTTATTTTAAAT
86603798 AAGTTTTACA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
35 22 0.71
36 9 0.29
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (35 bp):
TTTAAAATACATTTTAACAATTTTTTATTTTAAAT
Found at i:86604801 original size:35 final size:35
Alignment explanation
Indices: 86604750--86604819 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
86604740 AAAAATTGGT
*
86604750 GTAGTCAAAGAGATTAGTGTTACCAACATACCACG
1 GTAGTCAAAGAAATTAGTGTTACCAACATACCACG
86604785 GTAGTCAAAGAAATTAGTGTTACCAACATACCACG
1 GTAGTCAAAGAAATTAGTGTTACCAACATACCACG
86604820 TCAGCCGTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.23
Consensus pattern (35 bp):
GTAGTCAAAGAAATTAGTGTTACCAACATACCACG
Found at i:86612696 original size:16 final size:19
Alignment explanation
Indices: 86612665--86612706 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 19
86612655 TTTTTTGATT
*
86612665 TATTTTTATAAATAT-AGA
1 TATTTTTATAAATATAAAA
86612683 TATTTTT-T-AATATAAAA
1 TATTTTTATAAATATAAAA
86612700 TATTTTT
1 TATTTTT
86612707 GTTTACCCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 5 0.23
17 10 0.45
18 7 0.32
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (19 bp):
TATTTTTATAAATATAAAA
Found at i:86612847 original size:17 final size:17
Alignment explanation
Indices: 86612825--86612858 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
86612815 CTAAACAATT
86612825 GTACTAATTTAGTATTC
1 GTACTAATTTAGTATTC
86612842 GTACTAATTTAGTATTC
1 GTACTAATTTAGTATTC
86612859 TTGATATGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.47
Consensus pattern (17 bp):
GTACTAATTTAGTATTC
Found at i:86613654 original size:6 final size:6
Alignment explanation
Indices: 86613631--86613668 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
86613621 TTTTTATGTA
*
86613631 ATAATT GTAATT -TAAATT ATAATT ATAATT ATAATT AT
1 ATAATT ATAATT AT-AATT ATAATT ATAATT ATAATT AT
86613669 CACAATTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
5 1 0.03
6 27 0.93
7 1 0.03
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (6 bp):
ATAATT
Found at i:86617130 original size:14 final size:14
Alignment explanation
Indices: 86617111--86617137 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
86617101 TTATCAGCTC
86617111 TTATTATTTTATTA
1 TTATTATTTTATTA
86617125 TTATTATTTTATT
1 TTATTATTTTATT
86617138 TCAAATTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (14 bp):
TTATTATTTTATTA
Found at i:86622030 original size:27 final size:27
Alignment explanation
Indices: 86622012--86622081 Score: 86
Period size: 28 Copynumber: 2.6 Consensus size: 27
86622002 AATGCATGCT
86622012 TTTAATATGTCTTAGTTAATACATATC
1 TTTAATATGTCTTAGTTAATACATATC
* * **
86622039 TTTAATTTGTCTTAGCTTATTACATAAA
1 TTTAATATGTCTTAG-TTAATACATATC
*
86622067 TTTAATATGTTTTAG
1 TTTAATATGTCTTAG
86622082 CTTCAGTCGA
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
27 14 0.39
28 22 0.61
ACGTcount: A:0.31, C:0.09, G:0.09, T:0.51
Consensus pattern (27 bp):
TTTAATATGTCTTAGTTAATACATATC
Found at i:86625439 original size:15 final size:16
Alignment explanation
Indices: 86625414--86625445 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
86625404 TGAAAATAAA
86625414 ATGAGAAAAGAAAAAT
1 ATGAGAAAAGAAAAAT
86625430 ATGA-AAAAGAAAAAT
1 ATGAGAAAAGAAAAAT
86625445 A
1 A
86625446 ATTTGAGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.72, C:0.00, G:0.16, T:0.12
Consensus pattern (16 bp):
ATGAGAAAAGAAAAAT
Found at i:86632036 original size:22 final size:23
Alignment explanation
Indices: 86631997--86632039 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
86631987 GAAATCCTAC
*
86631997 CCATCCATCCTCTACACTCCACT
1 CCATCCAGCCTCTACACTCCACT
86632020 CCATCCAGCC-CTACACTCCA
1 CCATCCAGCCTCTACACTCCA
86632040 TGTGGGGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.23, C:0.53, G:0.02, T:0.21
Consensus pattern (23 bp):
CCATCCAGCCTCTACACTCCACT
Found at i:86632285 original size:27 final size:27
Alignment explanation
Indices: 86632247--86632299 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
86632237 AGTTATACAT
86632247 CTCATAAGGGCATAATAGTCATTTTAC
1 CTCATAAGGGCATAATAGTCATTTTAC
* * *
86632274 CTCATAGGGGCATATTAGTTATTTTA
1 CTCATAAGGGCATAATAGTCATTTTA
86632300 TTAATTTGGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (27 bp):
CTCATAAGGGCATAATAGTCATTTTAC
Found at i:86641357 original size:15 final size:15
Alignment explanation
Indices: 86641268--86641362 Score: 67
Period size: 15 Copynumber: 6.5 Consensus size: 15
86641258 TTTCTTCTCA
86641268 TCTTTCTCTTCATCT
1 TCTTTCTCTTCATCT
* * *
86641283 TC-TTCTCCCTCAACC
1 TCTTTCT-CTTCATCT
*
86641298 TCTTTCTCTTTATGCT
1 TCTTTCTCTTCAT-CT
* *
86641314 TCTTT-TATT--TTT
1 TCTTTCTCTTCATCT
86641326 TCTTGT-TCTTC-TCT
1 TCTT-TCTCTTCATCT
86641340 TCTTTCTCTTCATCT
1 TCTTTCTCTTCATCT
86641355 TCTTTCTC
1 TCTTTCTC
86641363 CCACAACAGA
Statistics
Matches: 62, Mismatches: 11, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
12 5 0.08
13 6 0.10
14 15 0.24
15 26 0.42
16 10 0.16
ACGTcount: A:0.06, C:0.32, G:0.02, T:0.60
Consensus pattern (15 bp):
TCTTTCTCTTCATCT
Found at i:86642788 original size:30 final size:30
Alignment explanation
Indices: 86642752--86642813 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
86642742 AAAAGTTTAT
86642752 AATAGAATATGTTTTATATTAAGAATAGAA
1 AATAGAATATGTTTTATATTAAGAATAGAA
86642782 AATAGAATATGTTTTATATTAAGAATAGAA
1 AATAGAATATGTTTTATATTAAGAATAGAA
86642812 AA
1 AA
86642814 GCCCAACCCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.52, C:0.00, G:0.13, T:0.35
Consensus pattern (30 bp):
AATAGAATATGTTTTATATTAAGAATAGAA
Found at i:86643260 original size:18 final size:17
Alignment explanation
Indices: 86643230--86643263 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
86643220 TTCTTTTATA
*
86643230 TAAAATACTTAAATTTC
1 TAAAATACATAAATTTC
86643247 TAAATATACATAAATTT
1 TAAA-ATACATAAATTT
86643264 TATTATCATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (17 bp):
TAAAATACATAAATTTC
Found at i:86644904 original size:18 final size:18
Alignment explanation
Indices: 86644883--86644933 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
86644873 CATGATGGCT
86644883 TAAATAATATATAAAACA
1 TAAATAATATATAAAACA
*
86644901 TAAAAGAATA-ATAAAACA
1 T-AAATAATATATAAAACA
* *
86644919 CATAATAAGATATAA
1 TA-AATAATATATAA
86644934 TGTATATAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
17 1 0.04
18 14 0.54
19 11 0.42
ACGTcount: A:0.67, C:0.06, G:0.04, T:0.24
Consensus pattern (18 bp):
TAAATAATATATAAAACA
Found at i:86647662 original size:176 final size:176
Alignment explanation
Indices: 86647334--86648131 Score: 918
Period size: 176 Copynumber: 4.5 Consensus size: 176
86647324 AATAAGACCG
* * * *
86647334 GCGGCTCAAATCTGCTCCATCACCGATACATGGAGATAAGATCTGC-CATC-CTCAA-CTTACTC
1 GCGGCTAAAATCTGCTCCATTACCGATACATGGAGATAAGAT-T-CACCTCTTTCAATC-TACTC
* * * * *
86647396 CACAACTACTTCGGGAAAT-AGATCTTCAATGTTCAGTCTGCTTCTTTT-CTACCTCAAGAAA-A
63 CGCTACTACTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTT-TTTTGCTACCTC-AGAAAGA
** *
86647458 TAAGACTTCAATCGCCAA-TCTGCTCTCTTGCTACCTCAGAGAGATAAAGCTA
126 TAAGAC-TCAATCTTCAACT-TGCTCTCTTGCTACCTCAGAGAGATAAGGCTA
* * *
86647510 GCGGCTAAAATCTTCTCCATTACCGATACATGGAGATAAGATTCACCTCTTCCAATCTGCTCCGC
1 GCGGCTAAAATCTGCTCCATTACCGATACATGGAGATAAGATTCACCTCTTTCAATCTACTCCGC
* * *
86647575 TACTACTTAAGGAGATAAAATCTTCAATCTTCAGTCTGCTTTTTTGCTACCTCAGAGAGATAAGA
66 TACTACTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTTTTTGCTACCTCAGAAAGATAAGA
* *
86647640 CTCAATCTTCAACTTGCTCTCTTGCTACCTTAGAGAGATAAGGCTT
131 CTCAATCTTCAACTTGCTCTCTTGCTACCTCAGAGAGATAAGGCTA
* * * ** * **
86647686 GAGGCTTAAATCTGCTCCATTACTGATACATGGAGATAAGATTTGCCTCTTTCGATCTGTTCCGC
1 GCGGCTAAAATCTGCTCCATTACCGATACATGGAGATAAGATTCACCTCTTTCAATCTACTCCGC
* * * * * *
86647751 TACTGCTTAGGGAGATAAGATATTCAATCTTCAATCTACTTTATTGCTACTTCAGAAAGATAAGA
66 TACTACTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTTTTTGCTACCTCAGAAAGATAAGA
* * * *
86647816 CTCAATCTTCAACCTACTCTCTTGCTACCTCAGAGAGATATGGCTT
131 CTCAATCTTCAACTTGCTCTCTTGCTACCTCAGAGAGATAAGGCTA
* * *
86647862 GGGGCTTAAATCTGCTCCATTACCGATACATGGAGATAAGATTCACCTCTTTCGATCTACTCCGC
1 GCGGCTAAAATCTGCTCCATTACCGATACATGGAGATAAGATTCACCTCTTTCAATCTACTCCGC
* * *
86647927 TACTACTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTTCTTGCTACTTCAGAAAGATAGGA
66 TACTACTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTTTTTGCTACCTCAGAAAGATAAGA
* * * *
86647992 CTCAATCTTCAACATGCTATCTTGCTACCTCAAAGAGATGAGGCTA
131 CTCAATCTTCAACTTGCTCTCTTGCTACCTCAGAGAGATAAGGCTA
* * * * * *
86648038 GTGG-TAAAATCTGCTCCATT-GC-ATACATGGAGATAAAATTCACCAT-TTTCGATCTGCTCCA
1 GCGGCTAAAATCTGCTCCATTACCGATACATGGAGATAAGATTCACC-TCTTTCAATCTACTCCG
* *
86648099 CT-GTAACTTTAGGGAGATAAGATATTCAATCTT
65 CTACT-AC-TTAGGGAGATAAGATCTTCAATCTT
86648132 TACCAATATC
Statistics
Matches: 543, Mismatches: 69, Indels: 22
0.86 0.11 0.03
Matches are distributed among these distances:
172 1 0.00
173 38 0.07
174 27 0.05
175 19 0.03
176 420 0.77
177 38 0.07
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (176 bp):
GCGGCTAAAATCTGCTCCATTACCGATACATGGAGATAAGATTCACCTCTTTCAATCTACTCCGC
TACTACTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTTTTTGCTACCTCAGAAAGATAAGA
CTCAATCTTCAACTTGCTCTCTTGCTACCTCAGAGAGATAAGGCTA
Found at i:86647824 original size:43 final size:43
Alignment explanation
Indices: 86647774--86647855 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 43
86647764 GATAAGATAT
* * *
86647774 TCAATCTTCAATCTACTTTATTGCTACTTCAGAAAGATAAGAC
1 TCAATCTTCAACCTACTCTATTGCTACCTCAGAAAGATAAGAC
* *
86647817 TCAATCTTCAACCTACTCTCTTGCTACCTCAGAGAGATA
1 TCAATCTTCAACCTACTCTATTGCTACCTCAGAAAGATA
86647856 TGGCTTGGGG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.32, C:0.26, G:0.10, T:0.33
Consensus pattern (43 bp):
TCAATCTTCAACCTACTCTATTGCTACCTCAGAAAGATAAGAC
Found at i:86649371 original size:48 final size:49
Alignment explanation
Indices: 86649278--86649504 Score: 363
Period size: 49 Copynumber: 4.7 Consensus size: 49
86649268 TTTATTATTG
* *
86649278 AGTCTCAAAGCACCCTTTGCGGGTTTTCACTTTGGCCTTTTTTTTTGAA
1 AGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGGTCTTTTTTTTTGAA
* *
86649327 AGTCTCAAAGCGTCCTTTGCGGTTTTTCACTTTGGTCTTTTTTTTTGAA
1 AGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGGTCTTTTTTTTTGAA
*
86649376 AGTCTTAAAGCGCCCTTTGCGGGTTTTCACTTTGG---TTTTTTTTGAA
1 AGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGGTCTTTTTTTTTGAA
*
86649422 AGTCTCAAAGCGCTCTTTGCGGGTTTTCACTTTGGTCTTTTTTTTT-AA
1 AGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGGTCTTTTTTTTTGAA
*
86649470 AGTCTCAAAGCGCCCTTTGCGGGTTTTTACTTTGG
1 AGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGG
86649505 CTTCCTTCCC
Statistics
Matches: 164, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
46 44 0.27
48 35 0.21
49 85 0.52
ACGTcount: A:0.15, C:0.20, G:0.20, T:0.45
Consensus pattern (49 bp):
AGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGGTCTTTTTTTTTGAA
Found at i:86649457 original size:95 final size:95
Alignment explanation
Indices: 86649278--86649507 Score: 374
Period size: 95 Copynumber: 2.4 Consensus size: 95
86649268 TTTATTATTG
*
86649278 AGTCTCAAAGCACCCTTTGCGGGTTTTCACTTTGGCCTTTTTTTTTGAAAGTCTCAAAGCGTCCT
1 AGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGG-C-TTTTTTTTGAAAGTCTCAAAGCGTCCT
*
86649343 TTGCGGTTTTTCACTTTGGTCTTTTTTTTTGAA
64 TTGCGGGTTTTCACTTTGGTCTTTTTTTTT-AA
*
86649376 AGTCTTAAAGCGCCCTTTGCGGGTTTTCACTTTGG-TTTTTTTTGAAAGTCTCAAAGCG-CTCTT
1 AGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGGCTTTTTTTTGAAAGTCTCAAAGCGTC-CTT
86649439 TGCGGGTTTTCACTTTGGTCTTTTTTTTTAA
65 TGCGGGTTTTCACTTTGGTCTTTTTTTTTAA
*
86649470 AGTCTCAAAGCGCCCTTTGCGGGTTTTTACTTTGGCTT
1 AGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGGCTT
86649508 CCTTCCCTTG
Statistics
Matches: 125, Mismatches: 5, Indels: 7
0.91 0.04 0.05
Matches are distributed among these distances:
94 36 0.29
95 56 0.45
98 33 0.26
ACGTcount: A:0.15, C:0.20, G:0.20, T:0.45
Consensus pattern (95 bp):
AGTCTCAAAGCGCCCTTTGCGGGTTTTCACTTTGGCTTTTTTTTGAAAGTCTCAAAGCGTCCTTT
GCGGGTTTTCACTTTGGTCTTTTTTTTTAA
Found at i:86660672 original size:18 final size:18
Alignment explanation
Indices: 86660651--86660701 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
86660641 CATGATGGCT
86660651 TAAATAATATATAAAACA
1 TAAATAATATATAAAACA
*
86660669 TAAAAGAATA-ATAAAACA
1 T-AAATAATATATAAAACA
* *
86660687 CATAATAAGATATAA
1 TA-AATAATATATAA
86660702 TGTATATGAT
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
17 1 0.04
18 14 0.54
19 11 0.42
ACGTcount: A:0.67, C:0.06, G:0.04, T:0.24
Consensus pattern (18 bp):
TAAATAATATATAAAACA
Found at i:86663171 original size:6 final size:6
Alignment explanation
Indices: 86663160--86663187 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
86663150 TAGTAAGGTA
86663160 ATTGGT ATTGGT ATTGGT ATTGGT ATTG
1 ATTGGT ATTGGT ATTGGT ATTGGT ATTG
86663188 TTAAAATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.00, G:0.32, T:0.50
Consensus pattern (6 bp):
ATTGGT
Found at i:86663598 original size:20 final size:20
Alignment explanation
Indices: 86663573--86663615 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
86663563 AAAATCAGAC
*
86663573 CAGGGTTAGTTTTGATTTGA
1 CAGGGTTACTTTTGATTTGA
86663593 CAGGGTTACTTTTGATTTGA
1 CAGGGTTACTTTTGATTTGA
86663613 CAG
1 CAG
86663616 TGTACAAGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.21, C:0.09, G:0.28, T:0.42
Consensus pattern (20 bp):
CAGGGTTACTTTTGATTTGA
Found at i:86665112 original size:12 final size:12
Alignment explanation
Indices: 86665097--86665129 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
86665087 TTTAGAAGCA
86665097 ATTTTCTTCTTG
1 ATTTTCTTCTTG
86665109 ATTTTCTTCTTG
1 ATTTTCTTCTTG
86665121 ATTTTCTTC
1 ATTTTCTTC
86665130 AAGGAGTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.09, C:0.18, G:0.06, T:0.67
Consensus pattern (12 bp):
ATTTTCTTCTTG
Found at i:86665355 original size:19 final size:20
Alignment explanation
Indices: 86665312--86665367 Score: 73
Period size: 20 Copynumber: 2.9 Consensus size: 20
86665302 ATATTTTCTT
*
86665312 TATTTAGTTA-TTATTTTTAA
1 TATTTA-TTATTTATTCTTAA
86665332 TATTTATTATTTATTCTTAA
1 TATTTATTATTTATTCTTAA
86665352 -ATTTATTATTT-TTCTT
1 TATTTATTATTTATTCTT
86665368 TTTTTTGTTC
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
18 5 0.15
19 14 0.41
20 15 0.44
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.68
Consensus pattern (20 bp):
TATTTATTATTTATTCTTAA
Found at i:86666230 original size:28 final size:22
Alignment explanation
Indices: 86666177--86666219 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
86666167 TTTACTTTAA
86666177 ATTGAAATATTTTATTTTCTTC
1 ATTGAAATATTTTATTTTCTTC
86666199 ATTGAAATATTTTATTTTCTT
1 ATTGAAATATTTTATTTTCTT
86666220 ATTCACTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.28, C:0.07, G:0.05, T:0.60
Consensus pattern (22 bp):
ATTGAAATATTTTATTTTCTTC
Found at i:86666605 original size:26 final size:23
Alignment explanation
Indices: 86666562--86666636 Score: 66
Period size: 23 Copynumber: 3.2 Consensus size: 23
86666552 ATTCTTTTAT
* *
86666562 TAGAGTTAA-TTTTGTCTTAATC
1 TAGAATTAATTTTTTTCTTAATC
*
86666584 TGAGCATTTATATTTTTTTCTT-ATC
1 T-AG-AATTA-ATTTTTTTCTTAATC
86666609 TAGAATTAATTTTTTT-TTAATCC
1 TAGAATTAATTTTTTTCTTAAT-C
86666632 TAGAA
1 TAGAA
86666637 CTTAGGTTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
21 2 0.05
22 11 0.25
23 12 0.27
24 6 0.14
25 5 0.11
26 8 0.18
ACGTcount: A:0.28, C:0.09, G:0.09, T:0.53
Consensus pattern (23 bp):
TAGAATTAATTTTTTTCTTAATC
Found at i:86668860 original size:110 final size:110
Alignment explanation
Indices: 86668431--86668860 Score: 452
Period size: 110 Copynumber: 3.9 Consensus size: 110
86668421 CGGCGATCAT
* * * * * *
86668431 TTAGCAGGTACTATGTACCGATGATATAGATCGTAACGATGGCTTGAGATCCTGCTTATGTTGCG
1 TTAGTAGGTACTATGTACTGGTGATACAGACCGTAACGATGGCTTGAGATCCTGCATATGTTGCG
** * * ****
86668496 GATTCTCCGC-GACTTGTGTGAGCAGCATTGTGAATAGGGGATTAA
66 GATTCTCTACAG-CTTGTATGAGCAGCATCGTGAGCCTGGGATTAA
* * * * * *
86668541 TT-TTAGGTATTATGTACCGGTGATACAGATCGTAATGATGGCTTGAGATCCGGCATATGTTGCG
1 TTAGTAGGTACTATGTACTGGTGATACAGACCGTAACGATGGCTTGAGATCCTGCATATGTTGCG
* * *
86668605 GATTCTCTGCAGCTTCTATGAGCAGCATCGTGAG-CTGAGAATTAA
66 GATTCTCTACAGCTTGTATGAGCAGCATCGTGAGCCTG-GGATTAA
* * * * * * * *
86668650 TTAGTAGGTACAATGTACTAGTGATACAGTCTGTGACAATGGCTTGGGATCCTGCATGTGTTGCG
1 TTAGTAGGTACTATGTACTGGTGATACAGACCGTAACGATGGCTTGAGATCCTGCATATGTTGCG
* * *
86668715 GATTGTCTACAACTTGTATGAGCAGCATCATGAGCCTGGGATTAA
66 GATTCTCTACAGCTTGTATGAGCAGCATCGTGAGCCTGGGATTAA
* * * * *
86668760 TTAGTATGTACTATGTACTGGTGATACAGGCCATAACGATGGCTTGAGATCCTGCATGTGTTACG
1 TTAGTAGGTACTATGTACTGGTGATACAGACCGTAACGATGGCTTGAGATCCTGCATATGTTGCG
* *
86668825 GATTCTCTACAGCTTGTGTGAACAGCATCGTGAGCC
66 GATTCTCTACAGCTTGTATGAGCAGCATCGTGAGCC
86668861 GGTTAAAGTT
Statistics
Matches: 265, Mismatches: 51, Indels: 8
0.82 0.16 0.02
Matches are distributed among these distances:
108 1 0.00
109 89 0.34
110 172 0.65
111 3 0.01
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (110 bp):
TTAGTAGGTACTATGTACTGGTGATACAGACCGTAACGATGGCTTGAGATCCTGCATATGTTGCG
GATTCTCTACAGCTTGTATGAGCAGCATCGTGAGCCTGGGATTAA
Found at i:86669123 original size:13 final size:13
Alignment explanation
Indices: 86669095--86669133 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
86669085 ACAGGAATTC
*
86669095 TGATAATAACCTTG
1 TGATAAGAA-CTTG
86669109 TGATAAGAACTTG
1 TGATAAGAACTTG
86669122 TGATAAGAACTT
1 TGATAAGAACTT
86669134 TGTTCTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 16 0.67
14 8 0.33
ACGTcount: A:0.38, C:0.10, G:0.18, T:0.33
Consensus pattern (13 bp):
TGATAAGAACTTG
Found at i:86670115 original size:21 final size:21
Alignment explanation
Indices: 86670091--86670142 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
86670081 CTGTCTTCCG
86670091 TGTCATGACAGAAGCCTTGCA
1 TGTCATGACAGAAGCCTTGCA
86670112 TGTCATGACAGAAGCCTTGCA
1 TGTCATGACAGAAGCCTTGCA
*
86670133 TGTCACGACA
1 TGTCATGACA
86670143 CTGAACAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23
Consensus pattern (21 bp):
TGTCATGACAGAAGCCTTGCA
Found at i:86672286 original size:39 final size:39
Alignment explanation
Indices: 86672231--86672306 Score: 116
Period size: 39 Copynumber: 1.9 Consensus size: 39
86672221 AAATGAATTG
*
86672231 TTGTTGGAATTATAATATTGAACTGGATATTCGGTTTTA
1 TTGTTGGAATTATAATACTGAACTGGATATTCGGTTTTA
* * *
86672270 TTGTTGGAATTGTAATACTGAATTGGATATTCTGTTT
1 TTGTTGGAATTATAATACTGAACTGGATATTCGGTTT
86672307 GAATTGAATG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.26, C:0.05, G:0.21, T:0.47
Consensus pattern (39 bp):
TTGTTGGAATTATAATACTGAACTGGATATTCGGTTTTA
Found at i:86673985 original size:15 final size:15
Alignment explanation
Indices: 86673965--86674000 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
86673955 TGGCACTCTA
86673965 AAGACCATATAATGT
1 AAGACCATATAATGT
*
86673980 AAGACCATATAGTGT
1 AAGACCATATAATGT
86673995 AAGACC
1 AAGACC
86674001 TTGGTTGGGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.44, C:0.17, G:0.17, T:0.22
Consensus pattern (15 bp):
AAGACCATATAATGT
Found at i:86674216 original size:29 final size:29
Alignment explanation
Indices: 86674160--86674216 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 29
86674150 TAAATTGACA
* *
86674160 CCTTTATGGCGATCCCTGTTATATGGAAG
1 CCTTTATGGCGATCCCTGTTAAAAGGAAG
* * *
86674189 CCTTTGTGGCTATCTCTGTTAAAAGGAA
1 CCTTTATGGCGATCCCTGTTAAAAGGAA
86674217 TGCTCTATGG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (29 bp):
CCTTTATGGCGATCCCTGTTAAAAGGAAG
Found at i:86678363 original size:21 final size:21
Alignment explanation
Indices: 86678301--86678364 Score: 110
Period size: 21 Copynumber: 3.0 Consensus size: 21
86678291 TACCTGGTAA
* *
86678301 AAGGTATCGATACTTTTTGTA
1 AAGGTATTGATACTTTTTGTG
86678322 AAGGTATTGATACTTTTTGTG
1 AAGGTATTGATACTTTTTGTG
86678343 AAGGTATTGATACTTTTTGTG
1 AAGGTATTGATACTTTTTGTG
86678364 A
1 A
86678365 TTGTTTGAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.27, C:0.06, G:0.22, T:0.45
Consensus pattern (21 bp):
AAGGTATTGATACTTTTTGTG
Found at i:86679809 original size:14 final size:14
Alignment explanation
Indices: 86679790--86679820 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
86679780 CCAATCACCA
86679790 GGCCAGTTTGGTTG
1 GGCCAGTTTGGTTG
86679804 GGCCAGTTTGGTTG
1 GGCCAGTTTGGTTG
86679818 GGC
1 GGC
86679821 TAAATGACCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.06, C:0.16, G:0.45, T:0.32
Consensus pattern (14 bp):
GGCCAGTTTGGTTG
Found at i:86684269 original size:14 final size:14
Alignment explanation
Indices: 86684250--86684281 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
86684240 TCCAATCACC
86684250 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
86684264 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
86684278 GGGC
1 GGGC
86684282 TAAATGACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.06, C:0.16, G:0.47, T:0.31
Consensus pattern (14 bp):
GGGCCAGTTTGGTT
Found at i:86684403 original size:20 final size:20
Alignment explanation
Indices: 86684375--86684418 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
86684365 TACTGATTAT
*
86684375 AATTTTTTAT-ACAAATTTTA
1 AATTATTTATAAC-AATTTTA
*
86684395 AATTATTTATAACACTTTTA
1 AATTATTTATAACAATTTTA
86684415 AATT
1 AATT
86684419 CTATATTATG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 19 0.90
21 2 0.10
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (20 bp):
AATTATTTATAACAATTTTA
Found at i:86691631 original size:48 final size:45
Alignment explanation
Indices: 86691513--86691646 Score: 144
Period size: 48 Copynumber: 2.8 Consensus size: 45
86691503 AGTGATAATT
*
86691513 TTAAATTTTCAATACTATTCGATATTATTTTAATTTATGCAAATTTAA
1 TTAAA-TTTCAATACTATT-GATATT-TTTTCATTTATGCAAATTTAA
*
86691561 TTAAATTTGCAATACTATTTGATATTTTATTCATTTATG-TAATTATAA
1 TTAAATTT-CAATACTA-TTGATATTTT-TTCATTTATGCAAATT-TAA
* *
86691609 TTACAATTTCAATACTGCTTGATTTTTTTTCATTTATG
1 TTA-AATTTCAATACT-ATTGATATTTTTTCATTTATG
86691647 ATGTTTGCAT
Statistics
Matches: 76, Mismatches: 4, Indels: 13
0.82 0.04 0.14
Matches are distributed among these distances:
47 19 0.25
48 50 0.66
49 7 0.09
ACGTcount: A:0.33, C:0.09, G:0.06, T:0.52
Consensus pattern (45 bp):
TTAAATTTCAATACTATTGATATTTTTTCATTTATGCAAATTTAA
Found at i:86692648 original size:14 final size:14
Alignment explanation
Indices: 86692629--86692660 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
86692619 TAGTCGTTTC
*
86692629 GTATTTAGTATTTT
1 GTATTTAGTATTAT
86692643 GTATTTAGTATTAT
1 GTATTTAGTATTAT
86692657 GTAT
1 GTAT
86692661 ATAAGTAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.25, C:0.00, G:0.16, T:0.59
Consensus pattern (14 bp):
GTATTTAGTATTAT
Found at i:86696999 original size:126 final size:126
Alignment explanation
Indices: 86696774--86697155 Score: 631
Period size: 126 Copynumber: 3.0 Consensus size: 126
86696764 TTATAGCCTC
*
86696774 ATTTTTCTACGAACTACTGCAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
* *
86696839 ACAGTGCATCCTGCTTGAAGTGTTTTTGGCACTATTTGTTCAGAAACGTCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTTCGGCACTATTTGTTCAGAAACGTCTACTCAGAATT
* ** * *
86696900 ATTTTTCTACGAACTATTGTAGCAAAAGAGTATCTACGTGGGAGCTTTTTCCAGAAATTTTGCTA
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
*
86696965 ACAGTACATCCTGCTTGAAGCGTTTTCGGCACTATTTGTTCAGAAACGTCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTTCGGCACTATTTGTTCAGAAACGTCTACTCAGAATT
86697026 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
* **
86697091 ACAGTGCATCCTGCTTGAAGCGTTTTCCGACACTATTT-TTCCAGAAACGTCTGGTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTT-CGGCACTATTTGTT-CAGAAACGTCTACTCAGAATT
86697153 ATT
1 ATT
86697156 CTTGCAGAAA
Statistics
Matches: 236, Mismatches: 18, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
126 204 0.86
127 32 0.14
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (126 bp):
ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
ACAGTGCATCCTGCTTGAAGCGTTTTCGGCACTATTTGTTCAGAAACGTCTACTCAGAATT
Found at i:86704280 original size:31 final size:31
Alignment explanation
Indices: 86704244--86704306 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
86704234 AAGAGTTTGG
86704244 TGGCCCTTCGCTGGCACCTGAAGAGGTCACC
1 TGGCCCTTCGCTGGCACCTGAAGAGGTCACC
86704275 TGGCCCTTCGCTGGCACCTGAAGAGGTCACC
1 TGGCCCTTCGCTGGCACCTGAAGAGGTCACC
86704306 T
1 T
86704307 TGCTTATAGC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.16, C:0.35, G:0.29, T:0.21
Consensus pattern (31 bp):
TGGCCCTTCGCTGGCACCTGAAGAGGTCACC
Found at i:86706980 original size:48 final size:48
Alignment explanation
Indices: 86706909--86707273 Score: 306
Period size: 48 Copynumber: 7.6 Consensus size: 48
86706899 TAAATTGCCT
* * *
86706909 ATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATGTCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGAGGCCG
* * * * *
86706957 ATGCCATGTCCCAAACATGGTCTTATACTAGCTCTCATATCAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGAGGCCG
* * * * *
86707005 TTTCCATGTCCCAGACATGGTCTTATACTGGCTCTCATAAT-GTGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATCGAGGCCG
* * * * * * * *
86707053 ATGCCATGTCCTAGACTTGGTTTTACACTAGCACAT-ATATCAACGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATATCGAGGCCG
* * * * *
86707101 ATGCCATGTCCCAAACATGGTCTTACATTGGCTCTCATAAT-GTGCCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATCGAGGCCG
* * * * * * * * *
86707149 ATGCCATGTCCAAGATATGGTATTACATTAGCACACATATCAACGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGAGGCCG
* * * * *
86707197 ATGACATGTCCCAGACATGGTCCTACATTGGCTCTCATAAT-GTGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATCGAGGCCG
86707245 ATGCCATGTCCCAGACATGGTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
86707274 AGTACACATA
Statistics
Matches: 243, Mismatches: 67, Indels: 14
0.75 0.21 0.04
Matches are distributed among these distances:
47 5 0.02
48 231 0.95
49 7 0.03
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGAGGCCG
Found at i:86707083 original size:96 final size:96
Alignment explanation
Indices: 86706909--86707286 Score: 445
Period size: 96 Copynumber: 3.9 Consensus size: 96
86706899 TAAATTGCCT
* * * * *
86706909 ATGCCATGTCCTAGACATGGTCTTACACTGGCTCACAT-GTCGAGGCCGATGCCATGTCCCAAAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATGCCATGTCCCAGAC
* * *
86706973 ATGGTCTTATACTAGCTCTCATATCAATGCCG
65 ATGGTCTTACACTAGCACTCATATCAACGCCG
* * * * * *
86707005 TTTCCATGTCCCAGACATGGTCTTATACTGGCTCTCATAATGTGGCTGATGCCATGTCCTAGACT
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCAGACA
* *
86707070 TGGTTTTACACTAGCACAT-ATATCAACGCTG
66 TGGTCTTACACTAGCAC-TCATATCAACGCCG
* * * * * *
86707101 ATGCCATGTCCCAAACATGGTCTTACATTGGCTCTCATAATGTGCCCAATGCCATGTCCAAGATA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCAGACA
* * *
86707166 TGGTATTACATTAGCACACATATCAACGCCG
66 TGGTCTTACACTAGCACTCATATCAACGCCG
* * * *
86707197 ATGACATGTCCCAGACATGGTCCTACATTGGCTCTCATAATGTGGCTGATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCAGACA
* *
86707262 TGGTCTTACACTAGTACACATATCA
66 TGGTCTTACACTAGCACTCATATCA
86707287 CCAAATTGTC
Statistics
Matches: 237, Mismatches: 42, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
96 235 0.99
97 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.29
Consensus pattern (96 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCAGACA
TGGTCTTACACTAGCACTCATATCAACGCCG
Found at i:86710237 original size:27 final size:27
Alignment explanation
Indices: 86710207--86710384 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
86710197 ATATTGAGTC
* * * *
86710207 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
86710234 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
86710261 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
86710289 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
86710316 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
86710343 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
86710370 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
86710385 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:86710346 original size:82 final size:81
Alignment explanation
Indices: 86710228--86710383 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
86710218 TGCTATATAA
* *
86710228 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
86710293 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
86710310 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
86710374 CACTTAGTGC
65 CACTTAGTGC
86710384 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:86712303 original size:21 final size:20
Alignment explanation
Indices: 86712275--86712313 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
86712265 GGACTAAACC
86712275 GAGAACTTTA-AAAACTTTTG
1 GAGAAC-TTAGAAAACTTTTG
86712295 GAGAGACTTAGAAAACTTT
1 GAGA-ACTTAGAAAACTTT
86712314 CATCATGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.31
Consensus pattern (20 bp):
GAGAACTTAGAAAACTTTTG
Found at i:86713079 original size:16 final size:16
Alignment explanation
Indices: 86713058--86713096 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
86713048 ATACCCAACA
*
86713058 TGATAGCTTGATAGTG
1 TGATAGCTTGACAGTG
86713074 TGATAGCTTGACAGTG
1 TGATAGCTTGACAGTG
86713090 TGATAGC
1 TGATAGC
86713097 ATCTCCGGCG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.26, C:0.10, G:0.31, T:0.33
Consensus pattern (16 bp):
TGATAGCTTGACAGTG
Found at i:86714123 original size:50 final size:50
Alignment explanation
Indices: 86714037--86714159 Score: 169
Period size: 50 Copynumber: 2.5 Consensus size: 50
86714027 GCAATGTCCT
* *
86714037 AGACATGGTCTTACACGAAAT--CATATATCGATGCCAATGCCATATCCC
1 AGACATGGTCTTACATGAGATCACATATATCGATGCCAATGCCATATCCC
* * *
86714085 ATATATGGTCTTACATGAGATCACATATATCGATGCCAATGCCATGTCCC
1 AGACATGGTCTTACATGAGATCACATATATCGATGCCAATGCCATATCCC
* *
86714135 AGACATGGTTTTACATGGGATCACA
1 AGACATGGTCTTACATGAGATCACA
86714160 CATAACCCTA
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
48 17 0.27
50 47 0.73
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.28
Consensus pattern (50 bp):
AGACATGGTCTTACATGAGATCACATATATCGATGCCAATGCCATATCCC
Found at i:86715895 original size:94 final size:94
Alignment explanation
Indices: 86715722--86715938 Score: 240
Period size: 94 Copynumber: 2.3 Consensus size: 94
86715712 CTGATTTACG
* * * * * * *
86715722 GACTTCACATGCTT-CCATAGCCGAACTATGGTCTTACACATGTAACCCTATATTTAATGTCTTA
1 GACTCCACATG-TTGCCATAGTCGAGCTAAGGGCTTACACATGTAACCCCATATTTAATGTCCTA
*
86715786 GTGAACTATCACATGTTTACTATCCT-GATA
65 GTGAACTACCACATGTTTACTATCCTGGA-A
* * * * *
86715816 GACTCTACATGTTGCCATAGTTGAGCTAAGGGCTTATACATGTAACCCCATGTTTAATGTCCTGG
1 GACTCCACATGTTGCCATAGTCGAGCTAAGGGCTTACACATGTAACCCCATATTTAATGTCCTAG
* * *
86715881 TGGACTACCCCATGTTTATTATCCTGGAA
66 TGAACTACCACATGTTTACTATCCTGGAA
* *
86715910 GACTCCAGATGTTGTCATAGTCGAGCTAA
1 GACTCCACATGTTGCCATAGTCGAGCTAA
86715939 AGTTTTACAA
Statistics
Matches: 101, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
93 2 0.02
94 97 0.96
95 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.33
Consensus pattern (94 bp):
GACTCCACATGTTGCCATAGTCGAGCTAAGGGCTTACACATGTAACCCCATATTTAATGTCCTAG
TGAACTACCACATGTTTACTATCCTGGAA
Found at i:86715913 original size:27 final size:27
Alignment explanation
Indices: 86715860--86715913 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
86715850 TATACATGTA
* **
86715860 ACCCCATGTTTAATGTCCTGGTGGACT
1 ACCCCATGTTTAATATCCTGGAAGACT
*
86715887 ACCCCATGTTTATTATCCTGGAAGACT
1 ACCCCATGTTTAATATCCTGGAAGACT
86715914 CCAGATGTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.22, C:0.26, G:0.19, T:0.33
Consensus pattern (27 bp):
ACCCCATGTTTAATATCCTGGAAGACT
Found at i:86719550 original size:49 final size:49
Alignment explanation
Indices: 86719478--86719578 Score: 157
Period size: 49 Copynumber: 2.1 Consensus size: 49
86719468 AAACATGGTA
* * *
86719478 GTTATAATTCTTTTTGGAAAGAATATAACGTTTTTAATACTTTCCATAT
1 GTTATAATTCTTTTTGGAAAGAATACAACGTGTTTAATACTTTACATAT
* *
86719527 GTTATAATTCTTTTTGGAAAGAATACAATGTGTTTAATGCTTTACATAT
1 GTTATAATTCTTTTTGGAAAGAATACAACGTGTTTAATACTTTACATAT
86719576 GTT
1 GTT
86719579 CTCTATAGGA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.32, C:0.09, G:0.13, T:0.47
Consensus pattern (49 bp):
GTTATAATTCTTTTTGGAAAGAATACAACGTGTTTAATACTTTACATAT
Found at i:86730109 original size:16 final size:16
Alignment explanation
Indices: 86730088--86730118 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
86730078 ATAAATTTGA
86730088 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
86730104 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
86730119 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:86731832 original size:28 final size:28
Alignment explanation
Indices: 86731801--86731856 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
86731791 TCAAGTTTTT
86731801 TTAAAAAAACATATATATAAAATAATAA
1 TTAAAAAAACATATATATAAAATAATAA
86731829 TTAAAAAAACATATATATAAAATAATAA
1 TTAAAAAAACATATATATAAAATAATAA
86731857 ATAAGAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.29
Consensus pattern (28 bp):
TTAAAAAAACATATATATAAAATAATAA
Found at i:86731850 original size:14 final size:14
Alignment explanation
Indices: 86731805--86731850 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
86731795 GTTTTTTTAA
86731805 AAAAACATATATAT
1 AAAAACATATATAT
*
86731819 AAAATA-ATA-ATTAA
1 AAAA-ACATATA-TAT
86731833 AAAAACATATATAT
1 AAAAACATATATAT
86731847 AAAA
1 AAAA
86731851 TAATAAATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 8
0.72 0.06 0.22
Matches are distributed among these distances:
13 2 0.08
14 22 0.85
15 2 0.08
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.26
Consensus pattern (14 bp):
AAAAACATATATAT
Found at i:86733579 original size:42 final size:42
Alignment explanation
Indices: 86733533--86733622 Score: 128
Period size: 42 Copynumber: 2.2 Consensus size: 42
86733523 ACTTATACGC
* *
86733533 CAATATAATCGCTTCGGTATATCTGATGGTGCATTTATGTGT
1 CAATATAATCGCTTCGGTATATCTGATGATGCACTTATGTGT
* * *
86733575 CAATATAATTGTTTCGGTTTATCTGATGATGCACTTATGTGT
1 CAATATAATCGCTTCGGTATATCTGATGATGCACTTATGTGT
86733617 -AATATA
1 CAATATA
86733623 TTTACTTCAG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
41 6 0.14
42 37 0.86
ACGTcount: A:0.27, C:0.12, G:0.19, T:0.42
Consensus pattern (42 bp):
CAATATAATCGCTTCGGTATATCTGATGATGCACTTATGTGT
Done.