Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 261 of 349
Found at i:86737385 original size:36 final size:37
Alignment explanation
Indices: 86737345--86737424 Score: 99
Period size: 37 Copynumber: 2.2 Consensus size: 37
86737335 GCCCTGCCAG
*
86737345 GGTCTTACACGT-ATCACCAAGCCATAGCCCAGCTAT
1 GGTCTTACACGTCATCACCAAGCCATAACCCAGCTAT
* * ** *
86737381 GGTCTTACATGTCATTATGATGCCATAACCCAGCTAT
1 GGTCTTACACGTCATCACCAAGCCATAACCCAGCTAT
86737418 GGTCTTA
1 GGTCTTA
86737425 TATGTTATTA
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
36 11 0.30
37 26 0.70
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (37 bp):
GGTCTTACACGTCATCACCAAGCCATAACCCAGCTAT
Found at i:86737413 original size:37 final size:37
Alignment explanation
Indices: 86737365--86737463 Score: 137
Period size: 37 Copynumber: 2.7 Consensus size: 37
86737355 GTATCACCAA
*
86737365 GCCATAGCCCAGCTATGGTCTTACATGTCATTATGAT
1 GCCATAACCCAGCTATGGTCTTACATGTCATTATGAT
* *
86737402 GCCATAACCCAGCTATGGTCTTATATGTTATTATGAT
1 GCCATAACCCAGCTATGGTCTTACATGTCATTATGAT
* *
86737439 GCCA-AAGTCCAACTATGGTCTTACA
1 GCCATAA-CCCAGCTATGGTCTTACA
86737464 CGTACACACA
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
36 2 0.04
37 53 0.96
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.32
Consensus pattern (37 bp):
GCCATAACCCAGCTATGGTCTTACATGTCATTATGAT
Found at i:86738518 original size:20 final size:20
Alignment explanation
Indices: 86738493--86738531 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
86738483 AACAGGAGTC
86738493 ACACGCCCGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
*
86738513 ACACGCCCGTGTGGTTTGG
1 ACACGCCCGTGTGGCTTGG
86738532 CCGTGTGGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.10, C:0.28, G:0.38, T:0.23
Consensus pattern (20 bp):
ACACGCCCGTGTGGCTTGGG
Found at i:86742990 original size:42 final size:42
Alignment explanation
Indices: 86742826--86742977 Score: 198
Period size: 42 Copynumber: 3.6 Consensus size: 42
86742816 TACTGTTCCA
* * ** *
86742826 ATGCCATATCCCAGATATAGTCTCACTTGGAA-TCGCATATCG
1 ATGCCATATCCCAGATATGGTCTTAC-ACGAAGTCTCATATCG
* * *
86742868 ACGCCAATAGCCCAGCTATGGTCTTACACGAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
86742911 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
*
86742953 ATACCATATCCCAGATATGGTCTTA
1 ATGCCATATCCCAGATATGGTCTTA
86742978 TTTGAAGTCT
Statistics
Matches: 96, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
42 66 0.69
43 30 0.31
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
Found at i:86744963 original size:24 final size:24
Alignment explanation
Indices: 86744931--86744982 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
86744921 ATTTTCTTTC
86744931 AATTATTATTTAATTAAACAA-TTG
1 AATTATTATTTAATTAAA-AATTTG
86744955 AATTATTATTTAATTAAAAATTTG
1 AATTATTATTTAATTAAAAATTTG
86744979 AATT
1 AATT
86744983 TTGAAAATGG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
23 2 0.07
24 25 0.93
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (24 bp):
AATTATTATTTAATTAAAAATTTG
Found at i:86750925 original size:15 final size:15
Alignment explanation
Indices: 86750903--86750950 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
86750893 AAGAAAACGA
86750903 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
** *
86750918 ATTGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
86750932 AATAAAGAAATCCAAG
1 -ATAAAGAAATCCAAG
86750948 ATA
1 ATA
86750951 CGATACTATG
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
14 4 0.16
15 17 0.68
16 4 0.16
ACGTcount: A:0.56, C:0.15, G:0.15, T:0.15
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:86756850 original size:40 final size:40
Alignment explanation
Indices: 86756795--86757012 Score: 341
Period size: 40 Copynumber: 5.5 Consensus size: 40
86756785 CAGATGATAA
86756795 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
86756835 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
86756875 CTGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
86756915 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
86756955 CCGGGCTAAGTCCCGAAGGCATTTGAGCGTG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
86756995 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
86757013 TACTTGGTTT
Statistics
Matches: 165, Mismatches: 12, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
39 17 0.10
40 148 0.90
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:86758467 original size:5 final size:5
Alignment explanation
Indices: 86758459--86758498 Score: 53
Period size: 5 Copynumber: 7.8 Consensus size: 5
86758449 TTAGTTTAGG
* *
86758459 TTTTC TTTTC TTTTC TTTTC TATTC TTTTTC TATTC TTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC -TTTTC TTTTC TTTT
86758499 TATTTTTGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 26 0.87
6 4 0.13
ACGTcount: A:0.05, C:0.17, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTC
Found at i:86758474 original size:10 final size:10
Alignment explanation
Indices: 86758461--86758502 Score: 59
Period size: 10 Copynumber: 4.2 Consensus size: 10
86758451 AGTTTAGGTT
*
86758461 TTCTTTTCTT
1 TTCTTTTCTA
86758471 TTCTTTTCTA
1 TTCTTTTCTA
86758481 TTCTTTTTCTA
1 TTC-TTTTCTA
86758492 TTCTTTT-TA
1 TTCTTTTCTA
86758501 TT
1 TT
86758503 TTTGTTGTAG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
9 4 0.13
10 16 0.53
11 10 0.33
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.76
Consensus pattern (10 bp):
TTCTTTTCTA
Found at i:86758490 original size:11 final size:11
Alignment explanation
Indices: 86758464--86758499 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
86758454 TTAGGTTTTC
*
86758464 TTTTCTTTTC-
1 TTTTCTATTCT
86758474 TTTTCTATTCT
1 TTTTCTATTCT
86758485 TTTTCTATTCT
1 TTTTCTATTCT
86758496 TTTT
1 TTTT
86758500 ATTTTTGTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 9 0.38
11 15 0.62
ACGTcount: A:0.06, C:0.17, G:0.00, T:0.78
Consensus pattern (11 bp):
TTTTCTATTCT
Found at i:86759245 original size:19 final size:20
Alignment explanation
Indices: 86759222--86759281 Score: 61
Period size: 19 Copynumber: 2.9 Consensus size: 20
86759212 ACAAAAAATA
86759222 CAAAATAATTTTCAAAATTT
1 CAAAATAATTTTCAAAATTT
*
86759242 -AAAAT-ATTTATAAAAATTT
1 CAAAATAATTT-TCAAAATTT
86759261 CAAAATTTATATTTTCAAAAT
1 CAAAA--TA-ATTTTCAAAAT
86759282 AATTATAAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
18 4 0.12
19 13 0.41
20 4 0.12
22 1 0.03
23 6 0.19
24 4 0.12
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.42
Consensus pattern (20 bp):
CAAAATAATTTTCAAAATTT
Found at i:86766264 original size:33 final size:33
Alignment explanation
Indices: 86766222--86766287 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
86766212 TGTCATCATT
86766222 ATTTATTTTGAGGCACACGGACAAGGCACACAC
1 ATTTATTTTGAGGCACACGGACAAGGCACACAC
*
86766255 ATTTATTTTGAGGCACACGGCCAAGGCACACAC
1 ATTTATTTTGAGGCACACGGACAAGGCACACAC
86766288 CCGTGTGCTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (33 bp):
ATTTATTTTGAGGCACACGGACAAGGCACACAC
Found at i:86772292 original size:46 final size:47
Alignment explanation
Indices: 86772150--86772408 Score: 228
Period size: 46 Copynumber: 5.5 Consensus size: 47
86772140 TTTGTGCGCC
* * ** *
86772150 AGTGTAAGACATGTCTGGAACATGCATCGGCCACATTACG-AGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATGTAGAGCT
* ** *
86772196 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAT-AAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCAAGATGTAGAGCT
*
86772244 AGTGTAAGACATGTCTGGGACATGTATCGGCCTCAAGATGTA-AGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATGTAGAGCT
*
86772290 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACAAGATGT---GTT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CAAGATGTAGAGCT
** ** * *
86772334 AGTACAAGACCATGTCTGGGACATGGCATCGGCAC-GGATATGTGAGAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CTCAAGATGT-AGAGCT
*
86772384 AGTGTAAGACCATGTCCGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
86772409 GCGTTGGCGT
Statistics
Matches: 175, Mismatches: 25, Indels: 23
0.78 0.11 0.10
Matches are distributed among these distances:
44 9 0.05
45 16 0.09
46 74 0.42
47 28 0.16
48 25 0.14
49 1 0.01
50 22 0.13
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATGTAGAGCT
Found at i:86772454 original size:49 final size:50
Alignment explanation
Indices: 86772147--86772464 Score: 203
Period size: 46 Copynumber: 6.7 Consensus size: 50
86772137 TTATTTGTGC
* **
86772147 GCCAGTGTAAGA-CATGTCTGGAACAT-GCATCGGCCAC--AT-TACGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CACGGATATGTGAGA
* ** * *
86772193 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA--TAAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATATGTGAGA
* * ** *
86772241 GCTAGTGTAAGA-CATGTCTGGGACAT-GTATCGGC-CTCAAGATGT-A-A
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GGATATGTGAGA
* * *
86772287 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTAC-AAGATGT----
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACGGATATGTGAGA
** **
86772331 GTTAGTACAAGACCATGTCTGGGACATGGCATCGGCACGGATATGTGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATATGTGAGA
* * * * *
86772381 GCCAGTGTAAGACCATGTCCGGGACATGGCGTTGGCGTC-GAT-TTTG-GTA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACGGATATGTGAG-A
*
86772430 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
86772465 TATTATACCC
Statistics
Matches: 224, Mismatches: 29, Indels: 35
0.78 0.10 0.12
Matches are distributed among these distances:
44 9 0.04
45 16 0.07
46 75 0.33
47 30 0.13
48 25 0.11
49 36 0.16
50 32 0.14
51 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (50 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATATGTGAGA
Found at i:86776501 original size:40 final size:40
Alignment explanation
Indices: 86776444--86776727 Score: 328
Period size: 40 Copynumber: 7.1 Consensus size: 40
86776434 TCAAATGATG
* * * *
86776444 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
*
86776484 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
**
86776524 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
86776564 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* * *
86776603 TTCCGGGCTAAGT-CCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
**
86776643 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * * **
86776683 ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
86776723 TCCGG
1 TCCGG
86776728 TTAAATTCCG
Statistics
Matches: 215, Mismatches: 21, Indels: 16
0.85 0.08 0.06
Matches are distributed among these distances:
39 40 0.19
40 166 0.77
41 9 0.04
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:86776577 original size:80 final size:80
Alignment explanation
Indices: 86776444--86776727 Score: 389
Period size: 80 Copynumber: 3.6 Consensus size: 80
86776434 TCAAATGATG
* * *
86776444 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGACTAAGATCCGAAGGCATT
86776508 TGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
*
86776524 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGACTAAGATCCGAAGGCATTT
*
86776589 GTGCGAGTTACTAAT
66 GTGCGAGTTACTAAA
* * **
86776604 TCCGGGCTAAGT-CCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGACTAAGAT-CCGAAGGCATT
86776667 TGTGCGAGTTACTATAA
65 TGTGCGAGTTACTA-AA
* **
86776684 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCCGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGG
86776728 TTAAATTCCG
Statistics
Matches: 183, Mismatches: 16, Indels: 10
0.88 0.08 0.05
Matches are distributed among these distances:
78 1 0.01
79 71 0.39
80 104 0.57
81 7 0.04
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:86776656 original size:119 final size:120
Alignment explanation
Indices: 86776445--86776708 Score: 392
Period size: 119 Copynumber: 2.2 Consensus size: 120
86776435 CAAATGATGT
* * * *
86776445 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CATATCCGGACTAAGATCCGAAGGCATT
1 CCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT-TCCGGACTAAGATCCGAAGGCATT
* *
86776508 TGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
64 GGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
86776565 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAG-TCCGAAGGCATTG
1 CCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGACTAAGATCCGAAGGCATTG
86776628 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
65 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
86776684 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGACTAAGTCCCGAAGGCATTTG
86776709 AACGAGTAGC
Statistics
Matches: 131, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
118 1 0.01
119 88 0.67
120 32 0.24
121 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (120 bp):
CCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGACTAAGATCCGAAGGCATTGG
TGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:86795139 original size:42 final size:41
Alignment explanation
Indices: 86795091--86795174 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 41
86795081 AATCGAGAGA
* * *
86795091 TTTACTACACTATTCTTTATTCTACATCAAATCCAAGTTTAT
1 TTTACTACAATATTCTTCATTCTACATAAAAT-CAAGTTTAT
*
86795133 TTTACTACAATGTTCTTCATTCTACATAAAATCAAGTTTAT
1 TTTACTACAATATTCTTCATTCTACATAAAATCAAGTTTAT
86795174 T
1 T
86795175 CTAATCTCTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
41 10 0.26
42 28 0.74
ACGTcount: A:0.32, C:0.19, G:0.04, T:0.45
Consensus pattern (41 bp):
TTTACTACAATATTCTTCATTCTACATAAAATCAAGTTTAT
Found at i:86795177 original size:21 final size:21
Alignment explanation
Indices: 86795106--86795177 Score: 56
Period size: 21 Copynumber: 3.4 Consensus size: 21
86795096 TACACTATTC
*
86795106 TTTATTCTACATCAAATCCAAG
1 TTTATTCTACATAAAAT-CAAG
* * ****
86795128 TTTATTTTAC-TACAATGTTC
1 TTTATTCTACATAAAATCAAG
*
86795148 TTCATTCTACATAAAATCAAG
1 TTTATTCTACATAAAATCAAG
86795169 TTTATTCTA
1 TTTATTCTA
86795178 ATCTCTTTTC
Statistics
Matches: 34, Mismatches: 15, Indels: 3
0.65 0.29 0.06
Matches are distributed among these distances:
20 8 0.24
21 17 0.50
22 9 0.26
ACGTcount: A:0.33, C:0.18, G:0.04, T:0.44
Consensus pattern (21 bp):
TTTATTCTACATAAAATCAAG
Found at i:86804365 original size:26 final size:26
Alignment explanation
Indices: 86804297--86804366 Score: 90
Period size: 25 Copynumber: 2.7 Consensus size: 26
86804287 TGGTAATCAA
*
86804297 TAAAATGGAAGCCTTTATGCCATATC
1 TAAAATGGAAGCCTTTGTGCCATATC
**
86804323 TTGAAT-GAAGCCTTTGTAG-CATATC
1 TAAAATGGAAGCCTTTGT-GCCATATC
86804348 TAAAATGGAAGCCTTTGTG
1 TAAAATGGAAGCCTTTGTG
86804367 GCGTATTTGA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
25 21 0.57
26 16 0.43
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (26 bp):
TAAAATGGAAGCCTTTGTGCCATATC
Found at i:86804379 original size:26 final size:26
Alignment explanation
Indices: 86804299--86804381 Score: 89
Period size: 26 Copynumber: 3.2 Consensus size: 26
86804289 GTAATCAATA
* *
86804299 AAATGGAAGCCTTTATGCCATATCTTG
1 AAATGGAAGCCTTTGTGGCATAT-TTG
* * *
86804326 -AAT-GAAGCCTTTGTAGCATATCTA
1 AAATGGAAGCCTTTGTGGCATATTTG
*
86804350 AAATGGAAGCCTTTGTGGCGTATTTG
1 AAATGGAAGCCTTTGTGGCATATTTG
86804376 AAATGG
1 AAATGG
86804382 GCGACCTCGT
Statistics
Matches: 45, Mismatches: 9, Indels: 5
0.76 0.15 0.08
Matches are distributed among these distances:
24 1 0.02
25 18 0.40
26 26 0.58
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (26 bp):
AAATGGAAGCCTTTGTGGCATATTTG
Found at i:86823553 original size:24 final size:25
Alignment explanation
Indices: 86823521--86823573 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
86823511 TTGAAATTAA
*
86823521 AAAAGATATAGAATTCA-AAAAAT-T
1 AAAAGATATA-AATTAATAAAAATAT
*
86823545 AAAATATATAAATTAATAAAAATAT
1 AAAAGATATAAATTAATAAAAATAT
86823570 AAAA
1 AAAA
86823574 ATTCTTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 5 0.20
24 15 0.60
25 5 0.20
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.26
Consensus pattern (25 bp):
AAAAGATATAAATTAATAAAAATAT
Found at i:86827772 original size:22 final size:22
Alignment explanation
Indices: 86827742--86827785 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
86827732 TAGTCATATA
86827742 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
86827764 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
86827786 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:86827821 original size:13 final size:14
Alignment explanation
Indices: 86827805--86827846 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
86827795 TTTCAATTTT
86827805 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
86827818 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
86827833 ATTTTAAATAATAT
1 ATTTT-AATAATAT
86827847 TATTCTCATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:86827831 original size:16 final size:16
Alignment explanation
Indices: 86827809--86827845 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
86827799 AATTTTATTT
86827809 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
86827826 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
86827841 TAATA
1 TAATA
86827846 TTATTCTCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:86827898 original size:15 final size:15
Alignment explanation
Indices: 86827878--86827934 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
86827868 ATTCAATATT
86827878 AATATTTTAATAATA
1 AATATTTTAATAATA
*
86827893 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
86827912 AATATATTAATAATA
1 AATATTTTAATAATA
*
86827927 AATGTTTT
1 AATATTTT
86827935 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:86831470 original size:5 final size:4
Alignment explanation
Indices: 86831443--86831482 Score: 53
Period size: 4 Copynumber: 9.2 Consensus size: 4
86831433 TAGAGAATAA
86831443 ATTT ATTT ATTT ATTT ATTT ATTTT ATTCT ATTT CATTT A
1 ATTT ATTT ATTT ATTT ATTT A-TTT ATT-T ATTT -ATTT A
86831483 AGATTATATT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
4 21 0.64
5 12 0.36
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (4 bp):
ATTT
Found at i:86832510 original size:15 final size:15
Alignment explanation
Indices: 86832474--86832515 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
86832464 ACGTTAACGT
*
86832474 AATTAAATTATTAATA
1 AATTTAATT-TTAATA
86832490 AATTTATATTTTAAT-
1 AATTTA-ATTTTAATA
86832505 AATTTAATTTT
1 AATTTAATTTT
86832516 TAAAATGTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
14 5 0.21
15 6 0.25
16 10 0.42
17 3 0.12
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
AATTTAATTTTAATA
Found at i:86832775 original size:29 final size:29
Alignment explanation
Indices: 86832726--86832788 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
86832716 GACAAGGGCG
*
86832726 ATAAAATTATACTTTGACA-TTAAAAAAT
1 ATAAAATTATACTTTAACATTTAAAAAAT
*
86832754 AATAAAATTTTA-TTTAATCATTTAAAAAAT
1 -ATAAAATTATACTTTAA-CATTTAAAAAAT
86832784 ATAAA
1 ATAAA
86832789 GATGTAAGCT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 4 0.13
29 17 0.57
30 9 0.30
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.38
Consensus pattern (29 bp):
ATAAAATTATACTTTAACATTTAAAAAAT
Found at i:86833760 original size:24 final size:24
Alignment explanation
Indices: 86833661--86833761 Score: 139
Period size: 24 Copynumber: 4.2 Consensus size: 24
86833651 AAGTCTGTCA
86833661 GGAGAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGTTGATAAG
*
86833685 GGATAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGTTGATAAG
* * * *
86833709 AGATAGAATTTAGGAGTTCATAAG
1 GGAGAGGATTTAGGAGTTGATAAG
* *
86833733 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGTTGATAAG
86833757 GGAGA
1 GGAGA
86833762 ACAGTGTTGG
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 67 1.00
ACGTcount: A:0.35, C:0.02, G:0.38, T:0.26
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGTTGATAAG
Found at i:86835215 original size:27 final size:26
Alignment explanation
Indices: 86835175--86835286 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
86835165 AGGAAGCGTC
*
86835175 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
86835202 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
86835229 CTGGTGGCTCTACCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
86835257 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
86835283 CTGG
1 CTGG
86835287 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 7 0.09
27 51 0.69
28 16 0.22
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:86835279 original size:54 final size:54
Alignment explanation
Indices: 86835175--86835286 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
86835165 AGGAAGCGTC
* *
86835175 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATACCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
86835229 CTGGTGGCTCTACCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATACCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
86835283 CTGG
1 CTGG
86835287 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATACCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:86841039 original size:93 final size:93
Alignment explanation
Indices: 86840926--86841097 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
86840916 CGCCCATAAG
* *
86840926 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
86840991 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
86841019 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
86841084 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
86841098 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:86841094 original size:46 final size:46
Alignment explanation
Indices: 86840919--86841094 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
86840909 TGTAACCCGC
* * *
86840919 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
86840965 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
86841015 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
86841058 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
86841095 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:86848434 original size:46 final size:46
Alignment explanation
Indices: 86848367--86848495 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
86848357 TGTAACCCCC
* * * *
86848367 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
86848413 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
86848459 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
86848496 TGCTCAACCA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:86848514 original size:46 final size:45
Alignment explanation
Indices: 86848375--86848514 Score: 140
Period size: 46 Copynumber: 3.0 Consensus size: 45
86848365 CCCCATAAGC
* ** * *
86848375 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
*** *
86848421 GAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T-AGT
86848467 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCTAGT
86848513 GA
1 GA
86848515 CATGTCACTT
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
46 79 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCTAGT
Found at i:86850077 original size:8 final size:8
Alignment explanation
Indices: 86850064--86850094 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
86850054 TTAGATAGGC
86850064 AAAAGCCG
1 AAAAGCCG
86850072 AAAAGCCG
1 AAAAGCCG
*
86850080 AAATGCCG
1 AAAAGCCG
86850088 AAAAGCC
1 AAAAGCC
86850095 AGTATTTCGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.48, C:0.26, G:0.23, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:86850553 original size:27 final size:26
Alignment explanation
Indices: 86850513--86850624 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
86850503 AGGAAGCGTC
*
86850513 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
86850540 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
86850567 CTGGTGGCTCTACCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
86850595 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
86850621 CTGG
1 CTGG
86850625 AAGCCATGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 7 0.09
27 51 0.69
28 16 0.22
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:86850617 original size:54 final size:54
Alignment explanation
Indices: 86850513--86850624 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
86850503 AGGAAGCGTC
* *
86850513 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATACCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
86850567 CTGGTGGCTCTACCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATACCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
86850621 CTGG
1 CTGG
86850625 AAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATACCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:86865114 original size:28 final size:29
Alignment explanation
Indices: 86865072--86865186 Score: 146
Period size: 29 Copynumber: 4.0 Consensus size: 29
86865062 TACCTGTATC
* *
86865072 TGGCTCATTAAGCCCAA-TCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
86865100 TGGCCCATTAGGCCCAAATCACCTAT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
*
86865129 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
86865158 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
86865186 T
1 T
86865187 TCATGCTTAC
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
28 28 0.36
29 48 0.62
30 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:86865421 original size:16 final size:16
Alignment explanation
Indices: 86865396--86865447 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
86865386 GTAGCCAAAC
*
86865396 TTTCAGCTTTTCGGCA
1 TTTCAACTTTTCGGCA
*
86865412 TTTCAACTTTTCGGTA
1 TTTCAACTTTTCGGCA
* * *
86865428 TTTCCACATTTCGACA
1 TTTCAACTTTTCGGCA
86865444 TTTC
1 TTTC
86865448 GGTATTTCAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.17, C:0.25, G:0.12, T:0.46
Consensus pattern (16 bp):
TTTCAACTTTTCGGCA
Found at i:86865431 original size:24 final size:24
Alignment explanation
Indices: 86865410--86865455 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
86865400 AGCTTTTCGG
*
86865410 CATTTCAACTTTTCGGTATTTCCA
1 CATTTCAACATTTCGGTATTTCCA
*
86865434 CATTTCGACATTTCGGTATTTC
1 CATTTCAACATTTCGGTATTTC
86865456 AACTTTTGTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.20, C:0.24, G:0.11, T:0.46
Consensus pattern (24 bp):
CATTTCAACATTTCGGTATTTCCA
Found at i:86870737 original size:42 final size:42
Alignment explanation
Indices: 86870678--86870763 Score: 172
Period size: 42 Copynumber: 2.0 Consensus size: 42
86870668 AATAAAAGGG
86870678 TTAATTTTGAAAACATATAGATCAAGAAAGGAGGAATTCAGA
1 TTAATTTTGAAAACATATAGATCAAGAAAGGAGGAATTCAGA
86870720 TTAATTTTGAAAACATATAGATCAAGAAAGGAGGAATTCAGA
1 TTAATTTTGAAAACATATAGATCAAGAAAGGAGGAATTCAGA
86870762 TT
1 TT
86870764 TAGATCGAGG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.47, C:0.07, G:0.19, T:0.28
Consensus pattern (42 bp):
TTAATTTTGAAAACATATAGATCAAGAAAGGAGGAATTCAGA
Found at i:86873481 original size:40 final size:40
Alignment explanation
Indices: 86873426--86873507 Score: 137
Period size: 40 Copynumber: 2.0 Consensus size: 40
86873416 AAGATATGGT
*
86873426 TTTATTTTGTTCGCTACAATTTTATGCGTATCTCACATAG
1 TTTATTTTGTTCGCTACAATTTTATGCCTATCTCACATAG
* *
86873466 TTTATTTTGTTCGCTATAGTTTTATGCCTATCTCACATAG
1 TTTATTTTGTTCGCTACAATTTTATGCCTATCTCACATAG
86873506 TT
1 TT
86873508 CCACCATCTC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.21, C:0.17, G:0.12, T:0.50
Consensus pattern (40 bp):
TTTATTTTGTTCGCTACAATTTTATGCCTATCTCACATAG
Found at i:86883694 original size:27 final size:27
Alignment explanation
Indices: 86883653--86883706 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
86883643 TGTCATGTGA
* *
86883653 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
86883680 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
86883707 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:86884032 original size:49 final size:50
Alignment explanation
Indices: 86883960--86884184 Score: 262
Period size: 49 Copynumber: 4.5 Consensus size: 50
86883950 TGAGGTCACG
* *
86883960 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTAGGTCGCA
* * * * * *
86884009 TGTGTAGTACTAAGTGCAGGCTACTATGA-GTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTA-CATGTACCGGATAA-TTAGGTCGCA
* * * **
86884060 TGTGTAGTACTAAGTGAAGGCTACTACATGTATCAGATGGTTAGG-C-CA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTAGGTCGCA
86884108 TGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATT-GGTCGCA
1 --TGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTAGGTCGCA
86884159 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
86884185 TGCGTACCAG
Statistics
Matches: 147, Mismatches: 21, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
48 1 0.01
49 64 0.44
50 44 0.30
51 38 0.26
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAATTAGGTCGCA
Found at i:86884143 original size:101 final size:98
Alignment explanation
Indices: 86883955--86884184 Score: 277
Period size: 100 Copynumber: 2.3 Consensus size: 98
86883945 TATTGTGAGG
* * *
86883955 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGAAGGCTACTACATGTACCAGATAATTGGTCGCATGTGTAGTACT
*
86884020 AAGTGCAGGCTACTATGAGTACCCGATAACTTCGA
66 AAGTGCAGGCTACTATCAGTACCCGATAA-TT-GA
* **
86884055 TCACGTGTGTAGTACTAAGTGAAGGCTACTACATGTATCAGATGGTTAGG-C-CATGTGTGTAGT
1 TCACGTGTGTAGTACTAAGTGAAGGCTACTACATGTACCAGATAATT-GGTCGCA--TGTGTAGT
* *
86884118 ACTAAGTGCAGGCTACTA-CATGTACCGGATAATTGG
63 ACTAAGTGCAGGCTACTATCA-GTACCCGATAATTGA
* * *
86884154 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGAAGGCTACTA
86884185 TGCGTACCAG
Statistics
Matches: 114, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
99 31 0.27
100 45 0.39
101 38 0.33
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGAAGGCTACTACATGTACCAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATCAGTACCCGATAATTGA
Found at i:86887856 original size:9 final size:9
Alignment explanation
Indices: 86887830--86887875 Score: 56
Period size: 9 Copynumber: 4.9 Consensus size: 9
86887820 TGAATTGGCC
*
86887830 AAATGGGCCG
1 AAATGGG-CT
86887840 AAATGGGCT
1 AAATGGGCT
*
86887849 AAACGGGCT
1 AAATGGGCT
86887858 GAAATGGGCT
1 -AAATGGGCT
86887868 AAATGGGC
1 AAATGGGC
86887876 CCGATGGACT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
9 17 0.53
10 15 0.47
ACGTcount: A:0.33, C:0.15, G:0.37, T:0.15
Consensus pattern (9 bp):
AAATGGGCT
Found at i:86887861 original size:19 final size:19
Alignment explanation
Indices: 86887834--86887876 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
86887824 TTGGCCAAAT
86887834 GGGCCGAAATGGGCTAAAC
1 GGGCCGAAATGGGCTAAAC
* *
86887853 GGGCTGAAATGGGCTAAAT
1 GGGCCGAAATGGGCTAAAC
86887872 GGGCC
1 GGGCC
86887877 CGATGGACTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.28, C:0.19, G:0.40, T:0.14
Consensus pattern (19 bp):
GGGCCGAAATGGGCTAAAC
Found at i:86888009 original size:29 final size:29
Alignment explanation
Indices: 86887967--86888049 Score: 89
Period size: 29 Copynumber: 2.9 Consensus size: 29
86887957 GCATGTGATC
* *
86887967 TGGGCCATATGAATATGAATTGGGCCTGA
1 TGGGCCATAAGAATATGAATTAGGCCTGA
* * *
86887996 TGGGCTATAAGAATGTGAATTAGGCTTGA
1 TGGGCCATAAGAATATGAATTAGGCCTGA
*
86888025 TGGGCCAT-ATAA-ATGAGATTAGGCC
1 TGGGCCATAAGAATATGA-ATTAGGCC
86888050 AAGTGGGCCA
Statistics
Matches: 44, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
27 3 0.07
28 10 0.23
29 31 0.70
ACGTcount: A:0.30, C:0.12, G:0.30, T:0.28
Consensus pattern (29 bp):
TGGGCCATAAGAATATGAATTAGGCCTGA
Found at i:86894461 original size:30 final size:29
Alignment explanation
Indices: 86894417--86894481 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 29
86894407 TCAAGTAGCT
*
86894417 AAAGCTAGTTAAATCGCACACTTAGTGCA
1 AAAGCTAGTTAAATCGCACACTTAATGCA
*
86894446 AAAGCTAGTTTAAATCGCACACTTAATGCC
1 AAAGCTAG-TTAAATCGCACACTTAATGCA
86894476 AAAGCT
1 AAAGCT
86894482 TTCAATTCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
29 8 0.24
30 25 0.76
ACGTcount: A:0.38, C:0.22, G:0.15, T:0.25
Consensus pattern (29 bp):
AAAGCTAGTTAAATCGCACACTTAATGCA
Found at i:86899528 original size:51 final size:49
Alignment explanation
Indices: 86899452--86899617 Score: 197
Period size: 50 Copynumber: 3.3 Consensus size: 49
86899442 GGAGGTCGCA
* * *
86899452 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAAAA-T-TGGTCACG
* * ***
86899503 TGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAAAATT-GGTCACG
* ** *
86899553 TGTGTAGTACTAAGTGCAGGCTATTACGTGTACTGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAAAATTGGTCACG
86899602 TGTGTAGTACTAAGTG
1 TGTGTAGTACTAAGTG
86899618 GTACTAAGTG
Statistics
Matches: 99, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 24 0.24
50 42 0.42
51 33 0.33
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAAAATTGGTCACG
Found at i:86899651 original size:59 final size:59
Alignment explanation
Indices: 86899559--86899672 Score: 176
Period size: 59 Copynumber: 1.9 Consensus size: 59
86899549 CACGTGTGTA
* *
86899559 GTACTAAGTGCAGGCTATTACGTGTACTGGATAATTGGTCACGTGTGTAGTACTAAGTG
1 GTACTAAGTGCAAGCTATTACGTGTACTGGATAATTGGTCACATGTGTAGTACTAAGTG
* *
86899618 GTACTAAGTGCAAGCTACTT-CGTGTTCTGGATAATTGGTCGCATGTGTAGTACTA
1 GTACTAAGTGCAAGCTA-TTACGTGTACTGGATAATTGGTCACATGTGTAGTACTA
86899673 TGTGCAGGCT
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
59 48 0.96
60 2 0.04
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (59 bp):
GTACTAAGTGCAAGCTATTACGTGTACTGGATAATTGGTCACATGTGTAGTACTAAGTG
Found at i:86903025 original size:46 final size:46
Alignment explanation
Indices: 86902958--86903132 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
86902948 TGTAACCCGC
*
86902958 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* * * *
86903004 CCATAAGTGAACTCGGACTCAACTCAATGAGTTTGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* ** *
86903054 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
86903097 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
86903133 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 59 0.57
47 25 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:86903073 original size:93 final size:93
Alignment explanation
Indices: 86902965--86903136 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
86902955 CGCCCATAAG
** *
86902965 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
86903030 ATGAGTTTGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
86903058 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
86903123 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
86903137 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:86909669 original size:9 final size:10
Alignment explanation
Indices: 86909657--86909710 Score: 51
Period size: 9 Copynumber: 5.5 Consensus size: 10
86909647 TACGTGGGAT
86909657 ATGATAT-AC
1 ATGATATGAC
*
86909666 ATGAT-TGAT
1 ATGATATGAC
86909675 ATGATATGCAC
1 ATGATATG-AC
*
86909686 ATGATATG-T
1 ATGATATGAC
86909695 ATGATATGCAC
1 ATGATATG-AC
86909706 ATGAT
1 ATGAT
86909711 GTATTCAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
8 1 0.03
9 19 0.53
10 2 0.06
11 14 0.39
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (10 bp):
ATGATATGAC
Found at i:86909679 original size:5 final size:5
Alignment explanation
Indices: 86909654--86909702 Score: 50
Period size: 5 Copynumber: 10.2 Consensus size: 5
86909644 TGATACGTGG
* *
86909654 GATAT GATAT -ACAT GAT-T GATAT GATAT GCACAT GATAT G-TAT GATAT
1 GATAT GATAT GATAT GATAT GATAT GATAT G-ATAT GATAT GATAT GATAT
86909702 G
1 G
86909703 CACATGATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
4 11 0.31
5 21 0.58
6 4 0.11
ACGTcount: A:0.37, C:0.06, G:0.20, T:0.37
Consensus pattern (5 bp):
GATAT
Found at i:86909689 original size:20 final size:21
Alignment explanation
Indices: 86909654--86909710 Score: 86
Period size: 20 Copynumber: 2.9 Consensus size: 21
86909644 TGATACGTGG
86909654 GATATGATAT--ACATGAT-T
1 GATATGATATGCACATGATAT
86909672 GATATGATATGCACATGATAT
1 GATATGATATGCACATGATAT
86909693 G-TATGATATGCACATGAT
1 GATATGATATGCACATGAT
86909711 GTATTCAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
18 10 0.28
20 24 0.67
21 2 0.06
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (21 bp):
GATATGATATGCACATGATAT
Found at i:86909789 original size:26 final size:26
Alignment explanation
Indices: 86909760--86909896 Score: 145
Period size: 26 Copynumber: 5.3 Consensus size: 26
86909750 GAGGAAGTGC
*
86909760 AAAAGGGCTTATGCCCCGGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
86909786 AAAAGGGCTTATGCCCTAGTTTTTTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
86909812 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* * **
86909838 AAAAGGGCTTATGCCCTAGATTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
86909864 -AAAGGGCTTCTGCCCTAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
86909887 AAAAGAGGCT
1 AAAAG-GGCT
86909897 AGGCCTCCAG
Statistics
Matches: 97, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
24 7 0.07
25 21 0.22
26 69 0.71
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:86917678 original size:25 final size:25
Alignment explanation
Indices: 86917649--86917696 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
86917639 TTATAGTATG
* * *
86917649 AAAATGACTATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
86917674 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
86917697 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:86917737 original size:9 final size:10
Alignment explanation
Indices: 86917725--86917781 Score: 57
Period size: 9 Copynumber: 5.8 Consensus size: 10
86917715 TACGTGGGAT
86917725 ATGATAT-AC
1 ATGATATGAC
*
86917734 ATGAT-TGAT
1 ATGATATGAC
86917743 ATGATATGCAC
1 ATGATATG-AC
*
86917754 ATGATATG-T
1 ATGATATGAC
86917763 ATGATATGCAC
1 ATGATATG-AC
86917774 ATGATATG
1 ATGATATG
86917782 TATGAAATGC
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 1 0.03
9 19 0.49
10 2 0.05
11 17 0.44
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (10 bp):
ATGATATGAC
Found at i:86917757 original size:20 final size:20
Alignment explanation
Indices: 86917724--86917798 Score: 111
Period size: 20 Copynumber: 3.9 Consensus size: 20
86917714 ATACGTGGGA
86917724 TATGATAT--ACATGAT-TG
1 TATGATATGCACATGATATG
86917741 ATATGATATGCACATGATATG
1 -TATGATATGCACATGATATG
86917762 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
86917782 TATGAAATGCACATGAT
1 TATGATATGCACATGAT
86917799 GTATTCATAA
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
18 8 0.15
20 43 0.81
21 2 0.04
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:86917759 original size:11 final size:11
Alignment explanation
Indices: 86917743--86917798 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
86917733 CATGATTGAT
86917743 ATGATATGCAC
1 ATGATATGCAC
*
86917754 ATGATATG--T
1 ATGATATGCAC
86917763 ATGATATGCAC
1 ATGATATGCAC
*
86917774 ATGATATG--T
1 ATGATATGCAC
*
86917783 ATGAAATGCAC
1 ATGATATGCAC
86917794 ATGAT
1 ATGAT
86917799 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:86917929 original size:52 final size:52
Alignment explanation
Indices: 86917848--86918062 Score: 303
Period size: 52 Copynumber: 4.2 Consensus size: 52
86917838 GAGGAAGTGC
86917848 AAAAGGGCTTAT-CCCCTAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCC-AGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
** *
86917900 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
* * *
86917952 AAAAGGGTTTACGCCCTAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
* * *
86918004 AAAAGGGCTTATGCCCTAGATTACCG-AAAGGGCTTCTGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
86918053 AAAAGAGGCT
1 AAAAG-GGCT
86918063 AGGCCTCCAG
Statistics
Matches: 148, Mismatches: 13, Indels: 6
0.89 0.08 0.04
Matches are distributed among these distances:
49 5 0.03
50 9 0.06
51 17 0.11
52 113 0.76
53 4 0.03
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
Found at i:86917981 original size:78 final size:78
Alignment explanation
Indices: 86917848--86918049 Score: 300
Period size: 78 Copynumber: 2.6 Consensus size: 78
86917838 GAGGAAGTGC
* * **
86917848 AAAAGGGCTTATCCCCTAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATG
1 AAAAGGGCTTATGCCCTAGTTTACCGAAAAGGGCTTACGCCCCAGTTTACCGAAAAGGGCTTATG
86917913 CCCCAGTTTATTG
66 CCCCAGTTTATTG
** * *
86917926 AAAAGGGCTTATGCCCTAGTTTATTGAAAAGGGTTTACGCCCTAGTTTACCGAAAAGGGCTTATG
1 AAAAGGGCTTATGCCCTAGTTTACCGAAAAGGGCTTACGCCCCAGTTTACCGAAAAGGGCTTATG
86917991 CCCCAGTTTATTG
66 CCCCAGTTTATTG
*
86918004 AAAAGGGCTTATGCCCTAGATTACCG-AAAGGGCTT-CTGCCCCAGTT
1 AAAAGGGCTTATGCCCTAGTTTACCGAAAAGGGCTTAC-GCCCCAGTT
86918050 ATTAAAAGAG
Statistics
Matches: 110, Mismatches: 13, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
76 1 0.01
77 16 0.15
78 93 0.85
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (78 bp):
AAAAGGGCTTATGCCCTAGTTTACCGAAAAGGGCTTACGCCCCAGTTTACCGAAAAGGGCTTATG
CCCCAGTTTATTG
Found at i:86918032 original size:26 final size:26
Alignment explanation
Indices: 86917848--86918062 Score: 265
Period size: 26 Copynumber: 8.3 Consensus size: 26
86917838 GAGGAAGTGC
* **
86917848 AAAAGGGCTTATCCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCTAGTTTATTG
*
86917874 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCTAGTTTATTG
*
86917900 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCTAGTTTATTG
86917926 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCTAGTTTATTG
* * **
86917952 AAAAGGGTTTACGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCTAGTTTATTG
*
86917978 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCTAGTTTATTG
* **
86918004 AAAAGGGCTTATGCCCTAGATTACCG
1 AAAAGGGCTTATGCCCTAGTTTATTG
* *
86918030 -AAAGGGCTTCTGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCTAGTTTATTG
86918053 AAAAGAGGCT
1 AAAAG-GGCT
86918063 AGGCCTCCAG
Statistics
Matches: 165, Mismatches: 22, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
24 7 0.04
25 20 0.12
26 138 0.84
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCTAGTTTATTG
Found at i:86918654 original size:18 final size:18
Alignment explanation
Indices: 86918631--86918665 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
86918621 ACTTAAGACG
*
86918631 TGTTTTCAAAACGACACT
1 TGTTTTCAAAACAACACT
*
86918649 TGTTTTCCAAACAACAC
1 TGTTTTCAAAACAACAC
86918666 AATGTTACGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.26, G:0.09, T:0.31
Consensus pattern (18 bp):
TGTTTTCAAAACAACACT
Found at i:86930202 original size:27 final size:27
Alignment explanation
Indices: 86930146--86930202 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
86930136 CTCAACCGTA
* *
86930146 TGTGCTACAAGGCTCAGAACACGCGTG
1 TGTGCTACAAGGCTCAAAACACGCGCG
*
86930173 TGTGCTACAAGGC-CTAAAACACGGGCG
1 TGTGCTACAAGGCTC-AAAACACGCGCG
86930200 TGT
1 TGT
86930203 ATCTTGGCCG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.26, C:0.25, G:0.30, T:0.19
Consensus pattern (27 bp):
TGTGCTACAAGGCTCAAAACACGCGCG
Found at i:86930351 original size:21 final size:21
Alignment explanation
Indices: 86930327--86930396 Score: 104
Period size: 21 Copynumber: 3.3 Consensus size: 21
86930317 CGACATGAAG
*
86930327 CACGGGCGTCTCCCTTGATCA
1 CACGGGCGTGTCCCTTGATCA
86930348 CACGGGCGTGTCCCTTGATCA
1 CACGGGCGTGTCCCTTGATCA
** *
86930369 CAAAGGCGTGTCCCTTTATCA
1 CACGGGCGTGTCCCTTGATCA
86930390 CACGGGC
1 CACGGGC
86930397 ATGTGCACCG
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.17, C:0.34, G:0.26, T:0.23
Consensus pattern (21 bp):
CACGGGCGTGTCCCTTGATCA
Found at i:86936853 original size:52 final size:51
Alignment explanation
Indices: 86936757--86936934 Score: 195
Period size: 52 Copynumber: 3.5 Consensus size: 51
86936747 AGATGCCTGG
* * * *
86936757 TGGCCTGCACATAGTACCACCCCTTGTAGT-CAAAGCTA-CCTTCTTCACAAA
1 TGGCCTTCACATAGTA-CAACACTTGT-GTCCAAAGCTATCTTTCTTCACAAA
*
86936808 TTGGCCTTCCCATAGTACAACACTTGTGTCCAAAGCTATCTTTCTTCACAAA
1 -TGGCCTTCACATAGTACAACACTTGTGTCCAAAGCTATCTTTCTTCACAAA
* *
86936860 GTGGCCTTCACATAGTACCACACTTGTGACC-AAGCTATCTCTTC-TCA-AAA
1 -TGGCCTTCACATAGTACAACACTTGTGTCCAAAGCTATCT-TTCTTCACAAA
* *
86936910 TGGCCTTCACAAAGTACTACACTTG
1 TGGCCTTCACATAGTACAACACTTG
86936935 AGTCACTAGC
Statistics
Matches: 112, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
49 23 0.21
50 5 0.04
51 28 0.25
52 56 0.50
ACGTcount: A:0.28, C:0.30, G:0.13, T:0.29
Consensus pattern (51 bp):
TGGCCTTCACATAGTACAACACTTGTGTCCAAAGCTATCTTTCTTCACAAA
Found at i:86946112 original size:40 final size:40
Alignment explanation
Indices: 86946075--86946295 Score: 281
Period size: 40 Copynumber: 5.5 Consensus size: 40
86946065 GCTACTCGTT
* *
86946075 CAAATGCCTTCGGGACATAGCCCGGTTATAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
86946115 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
86946155 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
86946195 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
86946234 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
86946275 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
86946296 TGGACATCAT
Statistics
Matches: 160, Mismatches: 13, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 113 0.71
41 14 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:86946253 original size:119 final size:120
Alignment explanation
Indices: 86946077--86946292 Score: 305
Period size: 119 Copynumber: 1.8 Consensus size: 120
86946067 TACTCGTTCA
* * *
86946077 AATGCCTTCGGGACATAGCCCGGTTATAGTGACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
*
86946142 ATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* *
86946197 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGG
* *
86946259 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTA
86946293 GCCTGGACAT
Statistics
Matches: 85, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
118 4 0.05
119 61 0.72
120 20 0.24
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:86954386 original size:119 final size:120
Alignment explanation
Indices: 86954210--86954432 Score: 310
Period size: 119 Copynumber: 1.9 Consensus size: 120
86954200 TACTCGTTCA
* * *
86954210 AATGCCTTCGGGACATAGCCCGGTTATAGTGACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
*
86954275 ATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* *
86954330 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGG
* * *
86954392 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
86954433 CATCATTCAA
Statistics
Matches: 91, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
118 4 0.04
119 67 0.74
120 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:86954432 original size:40 final size:40
Alignment explanation
Indices: 86954189--86954432 Score: 300
Period size: 40 Copynumber: 6.1 Consensus size: 40
86954179 CGGAATTTAA
** *
86954189 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
86954229 CCGGTTATAGTGACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
86954269 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
86954309 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
86954348 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
86954388 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
86954428 CCGGA
1 CCGGA
86954433 CATCATTCAA
Statistics
Matches: 180, Mismatches: 17, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
38 2 0.01
39 33 0.18
40 133 0.74
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:86966457 original size:48 final size:48
Alignment explanation
Indices: 86966253--86966460 Score: 208
Period size: 48 Copynumber: 4.3 Consensus size: 48
86966243 ATCCGAGATG
* * * * * *
86966253 TGTGCC-ATTGTAAGAACATGTCTGGGACATTGCAGCGGTGATGATATA
1 TGTGCCTA-TGTAAGACCATGTCTGAGACATGGCATCGGCGATTATATA
* * *
86966301 TGTGTCTATGTAAGACCATGTCTAAGACATGGCATCAGC-ATTGATATA
1 TGTGCCTATGTAAGACCATGTCTGAGACATGGCATCGGCGATT-ATATA
* * *
86966349 TGTGCCTATGTAAGACCATGTTTGAGAGATGGCATTGGCGATGT-TATA
1 TGTGCCTATGTAAGACCATGTCTGAGACATGGCATCGGCGAT-TATATA
* * * *
86966397 TGTTCCTGTGTAAGACCATGTATGGGACATGGCATCGGCGATTATATA
1 TGTGCCTATGTAAGACCATGTCTGAGACATGGCATCGGCGATTATATA
86966445 TGTGCC-ATTGTAAGAC
1 TGTGCCTA-TGTAAGAC
86966461 ATGGCATTGG
Statistics
Matches: 131, Mismatches: 23, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
47 3 0.02
48 124 0.95
49 3 0.02
50 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.31
Consensus pattern (48 bp):
TGTGCCTATGTAAGACCATGTCTGAGACATGGCATCGGCGATTATATA
Found at i:86968677 original size:46 final size:45
Alignment explanation
Indices: 86968520--86968684 Score: 175
Period size: 47 Copynumber: 3.7 Consensus size: 45
86968510 ACTCAACAGA
*
86968520 TGAACTCTCGACTCAACTCAACGAGTT----CATTCGCATCCATAG
1 TGAACTC-GGACTCAACTCAACGAGTTCGGACATTCGCATCCATAG
*
86968562 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA-
1 TGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCAT-AG
*
86968609 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AG
86968655 TGAACTCGGACTCAACTCAACGAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
86968685 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 6, Indels: 24
0.77 0.05 0.18
Matches are distributed among these distances:
41 18 0.17
42 9 0.09
43 4 0.04
44 2 0.02
45 2 0.02
46 29 0.28
47 30 0.29
48 3 0.03
49 4 0.04
50 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAG
Found at i:86968703 original size:46 final size:44
Alignment explanation
Indices: 86968520--86968703 Score: 148
Period size: 46 Copynumber: 4.1 Consensus size: 44
86968510 ACTCAACAGA
* * *
86968520 TGAACTCTCGACTCAACTCAACGAGTTC--ATTCGCATCCA--TAG
1 TGAACTC-GGACTCAACTCAACGAGTTCGGATGC-CAACCATCTAG
86968562 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTCA-
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT-AG
* * * *
86968609 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AAG
1 TGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCTAG
86968655 TGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CTAG
86968701 TGA
1 TGA
86968704 CATGTCACTT
Statistics
Matches: 114, Mismatches: 12, Indels: 28
0.74 0.08 0.18
Matches are distributed among these distances:
41 19 0.17
42 8 0.07
43 4 0.04
44 9 0.08
45 3 0.03
46 33 0.29
47 32 0.28
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.23
Consensus pattern (44 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCTAG
Found at i:86969126 original size:30 final size:30
Alignment explanation
Indices: 86969092--86969151 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
86969082 ATTTAATACG
86969092 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
86969122 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
86969152 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:86976092 original size:46 final size:47
Alignment explanation
Indices: 86976025--86976150 Score: 206
Period size: 46 Copynumber: 2.7 Consensus size: 47
86976015 GTAACCCCCC
*
86976025 TAAGTGAACTCGGACTCAACTCAACGAGC-TCAGG-CGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTTC-GGACATTCGCATCCA
86976071 TAAGTGAACTCGGACTCAACTCAACGA-CTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTTCGGACATTCGCATCCA
86976117 TAAGTGAACTCGGACTCAACTCAACGAG-TTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTTCGGA
86976151 TGCTCAACCA
Statistics
Matches: 76, Mismatches: 1, Indels: 6
0.92 0.01 0.07
Matches are distributed among these distances:
45 3 0.04
46 73 0.96
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.21
Consensus pattern (47 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTTCGGACATTCGCATCCA
Found at i:86976169 original size:46 final size:45
Alignment explanation
Indices: 86976027--86976169 Score: 130
Period size: 46 Copynumber: 3.1 Consensus size: 45
86976017 AACCCCCCTA
* * * *
86976027 AGTGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTC-GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTC-GGATGCTCACCATCC-T
* *** *
86976072 AAGTGAACTCGGACTCAACTCAACGACTTCGGACATTC-GCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T
86976118 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCT
86976165 AGTGA
1 AGTGA
86976170 CATGTCACTT
Statistics
Matches: 86, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
45 2 0.02
46 78 0.91
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCT
Found at i:86976602 original size:30 final size:30
Alignment explanation
Indices: 86976568--86976627 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
86976558 ATTTAATATG
86976568 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
86976598 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
86976628 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:86981287 original size:15 final size:15
Alignment explanation
Indices: 86981267--86981311 Score: 72
Period size: 15 Copynumber: 3.0 Consensus size: 15
86981257 GTCGAAAATC
86981267 CATAAACCAAATTTG
1 CATAAACCAAATTTG
**
86981282 CATAAACCAAATTCA
1 CATAAACCAAATTTG
86981297 CATAAACCAAATTTG
1 CATAAACCAAATTTG
86981312 TATACTTGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.49, C:0.22, G:0.04, T:0.24
Consensus pattern (15 bp):
CATAAACCAAATTTG
Found at i:86988166 original size:48 final size:48
Alignment explanation
Indices: 86988072--86988304 Score: 218
Period size: 48 Copynumber: 4.8 Consensus size: 48
86988062 ATGAGATTTC
* * * *
86988072 GTGTAAAACCATGTTTGGGACATGGAATTGGC-ATCCGAGT-TATGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGAT--GA-TATATGTGCCA
** * * * *
86988121 GTGTAAGACCACATCTGGCATATGGCATCGGTGATGATATATGTGCCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCA
* * * * * *
86988169 GTGTAAGACTATGTTTGGGGCATGGCATCGACGTTGATATATGTGCCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCA
* *
86988217 GTGTAAGACCATGTCTAGGACATGGCATCGGCGATGATATATGTACCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCA
* * * * *
86988265 TTGTAAAACCATGTCTGGGACATGGAATTGGTGATGATAT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
86988305 GTGGATTCAT
Statistics
Matches: 148, Mismatches: 34, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
47 1 0.01
48 122 0.82
49 23 0.16
50 2 0.01
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCA
Found at i:86988303 original size:96 final size:95
Alignment explanation
Indices: 86988072--86988304 Score: 247
Period size: 96 Copynumber: 2.4 Consensus size: 95
86988062 ATGAGATTTC
*
86988072 GTGTAAAACCATGTTTGGGACATGGAATTGGCATCCGAGT-TATGTGCCAGTGTAAGACCACATC
1 GTGTAAAACCATGTTTGGGACATGGAATTGGGAT--GA-TATATGTGCCAGTGTAAGACCACATC
* * *
86988136 TGGCATATGGCATCGGTGATGATATATGTGCCT
63 TGGCACATGGCATCGGCGATGATATATGTACCT
* * * * * * * * **
86988169 GTGTAAGACTATGTTTGGGGCATGGCATCGACGTTGATATATGTGCCTGTGTAAGACCATGTCTA
1 GTGTAAAACCATGTTTGGGACATGGAATTG-GGATGATATATGTGCCAGTGTAAGACCACATCT-
86988234 GG-ACATGGCATCGGCGATGATATATGTACCAT
64 GGCACATGGCATCGGCGATGATATATGTACC-T
*
86988266 -TGTAAAACCATGTCTGGGACATGGAATTGGTGATGATAT
1 GTGTAAAACCATGTTTGGGACATGGAATTGG-GATGATAT
86988305 GTGGATTCAT
Statistics
Matches: 109, Mismatches: 22, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
95 1 0.01
96 79 0.72
97 28 0.26
98 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (95 bp):
GTGTAAAACCATGTTTGGGACATGGAATTGGGATGATATATGTGCCAGTGTAAGACCACATCTGG
CACATGGCATCGGCGATGATATATGTACCT
Found at i:86988318 original size:48 final size:48
Alignment explanation
Indices: 86988142--86988335 Score: 137
Period size: 48 Copynumber: 4.0 Consensus size: 48
86988132 CATCTGGCAT
* * * * * *
86988142 ATGGCATCGGTGATGATATATGTG-CC-TGTGTAAGACTATGTTTGGGGC
1 ATGGAATCGGCGATGATATATG-GACCAT-TGTAAGACCATGTCTAGGAC
* * *
86988190 ATGGCATCGACGTTGATATATGTG-CC-TGTGTAAGACCATGTCTAGGAC
1 ATGGAATCGGCGATGATATATG-GACCAT-TGTAAGACCATGTCTAGGAC
* * * *
86988238 ATGGCATCGGCGATGATATATGTACCATTGTAAAACCATGTCTGGGAC
1 ATGGAATCGGCGATGATATATGGACCATTGTAAGACCATGTCTAGGAC
* * * * * *
86988286 ATGGAATTGGTGATGATATGTGGATTCA-TGTAAGACCATCTCTTGGAC
1 ATGGAATCGGCGATGATATATGGA-CCATTGTAAGACCATGTCTAGGAC
86988334 AT
1 AT
86988336 AACATTGGTA
Statistics
Matches: 122, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
48 119 0.98
49 3 0.02
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (48 bp):
ATGGAATCGGCGATGATATATGGACCATTGTAAGACCATGTCTAGGAC
Found at i:86996320 original size:28 final size:27
Alignment explanation
Indices: 86996263--86996414 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
86996253 TAAATTGTGC
* *
86996263 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
86996290 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
86996318 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
86996345 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
86996373 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
86996400 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
86996415 GACTTAATAT
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:86996328 original size:55 final size:55
Alignment explanation
Indices: 86996263--86996414 Score: 241
Period size: 55 Copynumber: 2.8 Consensus size: 55
86996253 TAAATTGTGC
* *
86996263 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* *
86996318 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * *
86996373 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
86996415 GACTTAATAT
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 90 1.00
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
Found at i:87004481 original size:28 final size:27
Alignment explanation
Indices: 87004424--87004575 Score: 223
Period size: 27 Copynumber: 5.6 Consensus size: 27
87004414 TAAATTGTGC
* *
87004424 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
87004451 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
87004479 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
87004506 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
87004534 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
* *
87004561 AGCAATGAGTGTGCG
1 AGCACTAAGTGTGCG
87004576 GACTTAATAT
Statistics
Matches: 117, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
27 65 0.56
28 52 0.44
ACGTcount: A:0.28, C:0.12, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:87004489 original size:55 final size:55
Alignment explanation
Indices: 87004424--87004575 Score: 232
Period size: 55 Copynumber: 2.8 Consensus size: 55
87004414 TAAATTGTGC
* *
87004424 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* *
87004479 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * * *
87004534 AGCACTAAGTGTGCGAGTTGATTATATAGCAATGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
87004576 GACTTAATAT
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 89 1.00
ACGTcount: A:0.28, C:0.12, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
Found at i:87016944 original size:47 final size:47
Alignment explanation
Indices: 87016880--87017009 Score: 161
Period size: 47 Copynumber: 2.8 Consensus size: 47
87016870 GTGCAAATAA
* * * * * *
87016880 TACCTAGATTTGGCTACGGGCCATGATATAAGTATTTTGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAAGTACTCTAAGAGAAGT
* * *
87016927 TACCTTGATTTAGCTACGGGCCATGGTATAGGTACTCTAAGATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAAGTACTCTAAGAGAAGT
* *
87016974 TACCTTGATTTGGCTACAGGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTATAAGTACT
87017010 TATCGATTGT
Statistics
Matches: 72, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.32
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAAGTACTCTAAGAGAAGT
Found at i:87021105 original size:40 final size:40
Alignment explanation
Indices: 87021037--87021220 Score: 266
Period size: 40 Copynumber: 4.6 Consensus size: 40
87021027 AACCCAAGTA
*
87021037 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
*
87021076 CCTTCGGGACTTAGCTCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
*
87021116 CCTTCGGGACTTAGCCCGGATATAGCAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
* * *
87021156 CCTTCGGGACTTAGCCCGGATTTAGTC-ACTAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAATG
*
87021196 CCTTC-GGATCTTAGTCCGGATATAG
1 CCTTCGGGA-CTTAGCCCGGATATAG
87021221 TCACTAACAC
Statistics
Matches: 133, Mismatches: 9, Indels: 5
0.90 0.06 0.03
Matches are distributed among these distances:
39 16 0.12
40 116 0.87
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
Found at i:87022829 original size:29 final size:29
Alignment explanation
Indices: 87022766--87022833 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
87022756 TAATCAACCA
*
87022766 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
87022795 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
87022824 CGCACACTTA
1 CGCACACTTA
87022834 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:87022945 original size:174 final size:174
Alignment explanation
Indices: 87022655--87022982 Score: 620
Period size: 174 Copynumber: 1.9 Consensus size: 174
87022645 AACTCAAGGT
* * *
87022655 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
87022720 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
87022785 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
87022829 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
87022894 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
87022959 ACTTTAAACTCACACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
87022983 TGTACAATTT
Statistics
Matches: 150, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 150 1.00
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:87022976 original size:29 final size:30
Alignment explanation
Indices: 87022942--87023013 Score: 96
Period size: 29 Copynumber: 2.5 Consensus size: 30
87022932 ATCAACCACG
*
87022942 CACACTTAGTGCCATGTAC-TTTAAACTCA
1 CACACTTAGTGCCATGTACATTTAAACCCA
*
87022971 CACACTTAGTG-C-TGTACAATTTAAACCCG
1 CACACTTAGTGCCATGTAC-ATTTAAACCCA
87023000 CACACTTAGTGCCA
1 CACACTTAGTGCCA
87023014 ATCTCATGAC
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
27 5 0.14
28 1 0.03
29 30 0.81
30 1 0.03
ACGTcount: A:0.31, C:0.29, G:0.12, T:0.28
Consensus pattern (30 bp):
CACACTTAGTGCCATGTACATTTAAACCCA
Found at i:87026443 original size:20 final size:20
Alignment explanation
Indices: 87026403--87026443 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
87026393 ATGATTTCAT
* *
87026403 GAAATTTTTCTAAGTGTTCG
1 GAAATTTTTATAAGTGATCG
*
87026423 GAAATTTTTATATGTGATCG
1 GAAATTTTTATAAGTGATCG
87026443 G
1 G
87026444 TTGAGTCTCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.27, C:0.07, G:0.22, T:0.44
Consensus pattern (20 bp):
GAAATTTTTATAAGTGATCG
Found at i:87030650 original size:6 final size:6
Alignment explanation
Indices: 87030624--87030662 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
87030614 TAATTAAGAT
* * *
87030624 AAATAA AGATAA AAGTGA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAA
87030663 GTTTTTAAAC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:87032309 original size:13 final size:13
Alignment explanation
Indices: 87032291--87032315 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
87032281 TGTGGGTGCA
87032291 CATGGCCGTGTCG
1 CATGGCCGTGTCG
87032304 CATGGCCGTGTC
1 CATGGCCGTGTC
87032316 TTGCTTTGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.32, G:0.36, T:0.24
Consensus pattern (13 bp):
CATGGCCGTGTCG
Found at i:87037330 original size:21 final size:20
Alignment explanation
Indices: 87037306--87037361 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 20
87037296 GAAACAGGGC
87037306 ACACGCCTGTGTGGAAGGGAA
1 ACACGCC-GTGTGGAAGGGAA
* *
87037327 ACACGTCCGTGTAGAAGGGGA
1 ACACG-CCGTGTGGAAGGGAA
87037348 ACACGCCCGTGTGG
1 ACACG-CCGTGTGG
87037362 CCATTATAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 28 0.93
22 2 0.07
ACGTcount: A:0.25, C:0.23, G:0.38, T:0.14
Consensus pattern (20 bp):
ACACGCCGTGTGGAAGGGAA
Found at i:87038561 original size:49 final size:47
Alignment explanation
Indices: 87038489--87038749 Score: 168
Period size: 46 Copynumber: 5.5 Consensus size: 47
87038479 AACATAAGGT
87038489 ATGTCCCAGACATAGTCTTACACTGACTATCGAAATTGAGGCCAATGCC
1 ATGTCCCAGACATAGTCTTACACTGACTA-C-AAATTGAGGCCAATGCC
* * * **
87038538 ATGTCCCAGACATGGTCTTACACTTG-CTCCCACATCTCCGTGCCAATGCC
1 ATGTCCCAGACATAGTCTTACAC-TGACT-ACAAAT-TGAG-GCCAATGCC
** *
87038588 ATGTCCCAGACATAGTCTTACACTGAC-ACATCTCGTA-GCCAATG-C
1 ATGTCCCAGACATAGTCTTACACTGACTACAAATTG-AGGCCAATGCC
* * *
87038633 ATGTCCCAGACAT-GTCTTACACT-AGCTTACATCA-CGAGGCCGATG-C
1 ATGTCCCAGACATAGTCTTACACTGA-C-TACA-AATTGAGGCCAATGCC
* ** * * *
87038679 ATGTCCCATACAT-GTCTTACACT-AGCT-CTCATCTCAATGCCGATGCC
1 ATGTCCCAGACATAGTCTTACACTGA-CTACAAAT-T-GAGGCCAATGCC
87038726 ATGTCCCAGACAT-GTCTTACACTG
1 ATGTCCCAGACATAGTCTTACACTG
87038750 GCCCACAAAT
Statistics
Matches: 175, Mismatches: 21, Indels: 33
0.76 0.09 0.14
Matches are distributed among these distances:
43 3 0.02
44 12 0.07
45 16 0.09
46 52 0.30
47 23 0.13
48 6 0.03
49 29 0.17
50 34 0.19
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (47 bp):
ATGTCCCAGACATAGTCTTACACTGACTACAAATTGAGGCCAATGCC
Found at i:87038599 original size:50 final size:47
Alignment explanation
Indices: 87038529--87038748 Score: 245
Period size: 46 Copynumber: 4.7 Consensus size: 47
87038519 CGAAATTGAG
*
87038529 GCCAATGCCATGTCCCAGACATGGTCTTACACTTGCTCCCACATCTCCGT
1 GCCAATGCCATGTCCCAGACAT-GTCTTACACTAGCT--CACATCTCCGT
*
87038579 GCCAATGCCATGTCCCAGACATAGTCTTACACT-G-ACACATCT-CGT
1 GCCAATGCCATGTCCCAGACAT-GTCTTACACTAGCTCACATCTCCGT
* * *
87038624 AGCCAATG-CATGTCCCAGACATGTCTTACACTAGCTTACATC-ACGAG
1 -GCCAATGCCATGTCCCAGACATGTCTTACACTAGCTCACATCTCCG-T
* * * **
87038671 GCCGATG-CATGTCCCATACATGTCTTACACTAGCTCTCATCTCAAT
1 GCCAATGCCATGTCCCAGACATGTCTTACACTAGCTCACATCTCCGT
*
87038717 GCCGATGCCATGTCCCAGACATGTCTTACACT
1 GCCAATGCCATGTCCCAGACATGTCTTACACT
87038749 GGCCCACAAA
Statistics
Matches: 149, Mismatches: 14, Indels: 17
0.83 0.08 0.09
Matches are distributed among these distances:
44 10 0.07
45 18 0.12
46 65 0.44
47 23 0.15
49 1 0.01
50 32 0.21
ACGTcount: A:0.25, C:0.34, G:0.16, T:0.26
Consensus pattern (47 bp):
GCCAATGCCATGTCCCAGACATGTCTTACACTAGCTCACATCTCCGT
Found at i:87050490 original size:28 final size:28
Alignment explanation
Indices: 87050447--87050562 Score: 130
Period size: 28 Copynumber: 4.2 Consensus size: 28
87050437 AGCATGGCTG
*
87050447 CCAG-AACAGAT-ATTGTGACAGAGTCA
1 CCAGAAACAGATAATTGTGACAGAGCCA
* * * *
87050473 CCAGATATAGATAATTGTGGCAGGGCCA
1 CCAGAAACAGATAATTGTGACAGAGCCA
* *
87050501 CCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGATAATTGTGACAGAGCCA
*
87050529 CCAGAAACAGATATTTGT-AGCAGAGCCA
1 CCAGAAACAGATAATTGTGA-CAGAGCCA
87050557 CCAGAA
1 CCAGAA
87050563 TGCTTCCTCC
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
26 4 0.05
27 5 0.06
28 68 0.88
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (28 bp):
CCAGAAACAGATAATTGTGACAGAGCCA
Found at i:87050531 original size:56 final size:55
Alignment explanation
Indices: 87050447--87050562 Score: 153
Period size: 56 Copynumber: 2.1 Consensus size: 55
87050437 AGCATGGCTG
* * * * *
87050447 CCAG-AACAGATATTGTGACAGAGTCACCAGATATAGATAATTGTGGCAGGGCCA
1 CCAGAAACAGATATTGTGACAGAGCCACCAGAAACAGATAATTGTAGCAGAGCCA
* *
87050501 CCAGAAACAGATATTTGTGGCAGAGCCACCAGAAACAGATATTTGTAGCAGAGCCA
1 CCAGAAACAGATA-TTGTGACAGAGCCACCAGAAACAGATAATTGTAGCAGAGCCA
87050557 CCAGAA
1 CCAGAA
87050563 TGCTTCCTCC
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
54 4 0.08
55 8 0.15
56 41 0.77
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (55 bp):
CCAGAAACAGATATTGTGACAGAGCCACCAGAAACAGATAATTGTAGCAGAGCCA
Found at i:87066257 original size:45 final size:45
Alignment explanation
Indices: 87066193--87066284 Score: 184
Period size: 45 Copynumber: 2.0 Consensus size: 45
87066183 GATAAATGCT
87066193 TTTGGATTAGAATCGAATGATAATATGAGACTTACTAAGTGTTTA
1 TTTGGATTAGAATCGAATGATAATATGAGACTTACTAAGTGTTTA
87066238 TTTGGATTAGAATCGAATGATAATATGAGACTTACTAAGTGTTTA
1 TTTGGATTAGAATCGAATGATAATATGAGACTTACTAAGTGTTTA
87066283 TT
1 TT
87066285 AATTGACAAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.35, C:0.07, G:0.20, T:0.39
Consensus pattern (45 bp):
TTTGGATTAGAATCGAATGATAATATGAGACTTACTAAGTGTTTA
Found at i:87074983 original size:43 final size:42
Alignment explanation
Indices: 87074928--87075082 Score: 170
Period size: 43 Copynumber: 3.7 Consensus size: 42
87074918 ATATCGTACA
** * * *
87074928 ATGCCAACGTCCCAGACGCGATCTTACATGCCATCACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AATCACATATCG
* *
87074971 ATGCC-ACTGTCCCAGACAAGGTCTTACACGAATCAAATA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGAATCACATATCG
* * *
87075012 ATGCCAATGTTCCAGACATGGTCTTACACATAATCACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACAC-GAATCACATATCG
*
87075055 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACATGGTCTTACA
87075083 TGATAACACA
Statistics
Matches: 94, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
41 26 0.28
42 18 0.19
43 50 0.53
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAATCACATATCG
Found at i:87075027 original size:41 final size:43
Alignment explanation
Indices: 87074960--87075082 Score: 169
Period size: 41 Copynumber: 2.9 Consensus size: 43
87074950 CTTACATGCC
* *
87074960 ATCACATATCGATGCCACTGTCCCAGACAAGGTCTTACAC-GA
1 ATCACATATCGATGCCAATGTCCCAGACATGGTCTTACACAGA
* * *
87075002 ATCAAATA-CGATGCCAATGTTCCAGACATGGTCTTACACATA
1 ATCACATATCGATGCCAATGTCCCAGACATGGTCTTACACAGA
* *
87075044 ATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACA
1 ATCACATATCGATGCCAATGTCCCAGACATGGTCTTACA
87075083 TGATAACACA
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
41 28 0.40
42 15 0.21
43 27 0.39
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (43 bp):
ATCACATATCGATGCCAATGTCCCAGACATGGTCTTACACAGA
Found at i:87078242 original size:26 final size:26
Alignment explanation
Indices: 87078206--87078289 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
87078196 CATGAAATTC
87078206 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
87078232 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
87078258 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
87078284 TTATCA
1 TTATCA
87078290 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:87088280 original size:37 final size:37
Alignment explanation
Indices: 87088221--87088366 Score: 238
Period size: 37 Copynumber: 3.9 Consensus size: 37
87088211 AGCTCAGACG
* *
87088221 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
87088258 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
87088295 AAATCTCCACACGTAGTCATCGGGTCTTACCCGAACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
87088332 TACTCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
87088367 ATATATTTCC
Statistics
Matches: 102, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.27, C:0.33, G:0.18, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:87088581 original size:47 final size:47
Alignment explanation
Indices: 87088529--87088903 Score: 552
Period size: 47 Copynumber: 8.0 Consensus size: 47
87088519 TTTCACACTA
* * * * * * *
87088529 GCCATTCGGCTTTACCATATTTATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
87088576 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
87088623 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATAG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* *
87088670 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATAG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * * *
87088717 GCCATTCAGCCTTATCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* *
87088764 GCCATTCGGCCTTATCACACATATGCATGCTCACATTAATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
* * * *
87088811 GCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
*
87088858 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATT
1 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATT
87088904 AAATCCTAAA
Statistics
Matches: 296, Mismatches: 32, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 296 1.00
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATTG
Found at i:87088648 original size:94 final size:94
Alignment explanation
Indices: 87088529--87088903 Score: 624
Period size: 94 Copynumber: 4.0 Consensus size: 94
87088519 TTTCACACTA
* * * *
87088529 GCCATTCGGCTTTACCATATTTATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
87088594 ACATATGCATGCTCACATTCATCACATTG
66 ACATATGCATGCTCACATTCATCACATTG
* * * *
87088623 GCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATAGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
* * *
87088688 ATATATGCATGTTCACATTCATCACATAG
66 ACATATGCATGCTCACATTCATCACATTG
*
87088717 GCCATTCAGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
*
87088782 ACATATGCATGCTCACATTAATCACATTG
66 ACATATGCATGCTCACATTCATCACATTG
*
87088811 GCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
87088876 ACATATGCATGCTCACATTCATCACATT
66 ACATATGCATGCTCACATTCATCACATT
87088904 AAATCCTAAA
Statistics
Matches: 258, Mismatches: 23, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
94 258 1.00
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32
Consensus pattern (94 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCAC
ACATATGCATGCTCACATTCATCACATTG
Found at i:87088733 original size:22 final size:22
Alignment explanation
Indices: 87088661--87088737 Score: 68
Period size: 22 Copynumber: 3.4 Consensus size: 22
87088651 GCTCACATTC
*
87088661 ATCACATAGGCCATTCGGCCTT
1 ATCACATAGGCCATTCAGCCTT
* *
87088683 ATCACATATATG-CATGTTCA-CATT
1 ATCAC--ATAGGCCA--TTCAGCCTT
87088707 CATCACATAGGCCATTCAGCCTT
1 -ATCACATAGGCCATTCAGCCTT
87088730 ATCACATA
1 ATCACATA
87088738 TATGCATGTT
Statistics
Matches: 43, Mismatches: 5, Indels: 14
0.69 0.08 0.23
Matches are distributed among these distances:
22 17 0.40
23 9 0.21
24 9 0.21
25 8 0.19
ACGTcount: A:0.30, C:0.29, G:0.12, T:0.30
Consensus pattern (22 bp):
ATCACATAGGCCATTCAGCCTT
Found at i:87114902 original size:36 final size:36
Alignment explanation
Indices: 87114862--87114930 Score: 120
Period size: 36 Copynumber: 1.9 Consensus size: 36
87114852 CTGAATGAAG
* *
87114862 TCCCACGTAACCCATTCTTTCCGAACAATTGAATCA
1 TCCCACGTAACCCATTCATTCAGAACAATTGAATCA
87114898 TCCCACGTAACCCATTCATTCAGAACAATTGAA
1 TCCCACGTAACCCATTCATTCAGAACAATTGAA
87114931 ATCAGAGTTC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.33, C:0.32, G:0.09, T:0.26
Consensus pattern (36 bp):
TCCCACGTAACCCATTCATTCAGAACAATTGAATCA
Found at i:87116012 original size:31 final size:32
Alignment explanation
Indices: 87115955--87116016 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
87115945 ATGAAGTCAC
* *
87115955 CAGATATAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATAGATATTGTGGCGAAGCCACCAGAA
*
87115987 CAGATATATATA-TGTGGCGAAGCCACCAGA
1 CAGATATAGATATTGTGGCGAAGCCACCAGA
87116017 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 16 0.59
32 11 0.41
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.21
Consensus pattern (32 bp):
CAGATATAGATATTGTGGCGAAGCCACCAGAA
Found at i:87116797 original size:27 final size:27
Alignment explanation
Indices: 87116764--87116934 Score: 234
Period size: 27 Copynumber: 6.3 Consensus size: 27
87116754 GGTATCACAA
87116764 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
* *
87116791 TATTTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
* * *
87116818 TAATTCTATCCTAAAGTGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
* **
87116845 TAATTCTACCCTACAGGAGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCGG
*
87116872 TAATTCTACCCTGCAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
* * *
87116899 TAATTCTACCTTACAGGGGTAATTCGC
1 TAATTCTACCCTACAGGGGTATTTCGG
87116926 TAATTCTAC
1 TAATTCTAC
87116935 AACTTATCCA
Statistics
Matches: 123, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 123 1.00
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGG
Found at i:87116801 original size:54 final size:54
Alignment explanation
Indices: 87116735--87116934 Score: 233
Period size: 54 Copynumber: 3.7 Consensus size: 54
87116725 ATGGCAAAAT
* **
87116735 GGTAATAT-TACCCCACAAGGGTATCACAATAATTCTACCCTACAGGGGTATTTC
1 GGTAAT-TCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTC
* ** * * *
87116789 GGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTATCCTAAAGTGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTC
*
87116843 GGTAATTCTACCCTAC-AGGAGTATTTCAATAATTCTACCCTGCAGGGGTATTTC
1 GGTAATTCTACCCTACAAGG-GTATTTCAATAATTCTACCCTACAGGGGTATTTC
* * * **
87116897 GGTAATTCTACCTTACAGGGGTAATTCGCTAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCAATAATTCTAC
87116935 AACTTATCCA
Statistics
Matches: 122, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
53 4 0.03
54 116 0.95
55 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTACAGGGGTATTTC
Found at i:87123401 original size:31 final size:32
Alignment explanation
Indices: 87123344--87123405 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
87123334 ACGAAGTCAC
* *
87123344 CAGATATAGATATTGTGGCTATGCCACCAGAA
1 CAGATATAGATATTGTGGCGAAGCCACCAGAA
*
87123376 CAGATATATATA-TGTGGCGAAGCCACCAGA
1 CAGATATAGATATTGTGGCGAAGCCACCAGA
87123406 TTGCAGTGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 16 0.59
32 11 0.41
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (32 bp):
CAGATATAGATATTGTGGCGAAGCCACCAGAA
Found at i:87124196 original size:54 final size:54
Alignment explanation
Indices: 87124113--87124312 Score: 251
Period size: 54 Copynumber: 3.7 Consensus size: 54
87124103 GGGGCAAAAT
* * *
87124113 GGTAATTTTACCCCACTAG-GGTATCTCAGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTAC-AGAGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
* * * *
87124167 GGTATTTCTACCCTACAAAGGTATTTCAGTAATTCTATCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGAGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
* * * * *
87124221 GGTAATTCTACCCTACCGGGGTATTTCAATAATTCTACCATACAGGGGAATTTC
1 GGTAATTCTACCCTACAGAGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
*
87124275 GGTAATTCTACCTTACAGAGGTATTTC-GATAATTCTAC
1 GGTAATTCTACCCTACAGAGGTATTTCAG-TAATTCTAC
87124313 AACTTATCCA
Statistics
Matches: 124, Mismatches: 20, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
53 1 0.01
54 123 0.99
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (54 bp):
GGTAATTCTACCCTACAGAGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
Found at i:87124302 original size:27 final size:27
Alignment explanation
Indices: 87124113--87124312 Score: 222
Period size: 27 Copynumber: 7.4 Consensus size: 27
87124103 GGGGCAAAAT
* * *
87124113 GGTAATTTTACCCCACTA-GGGTATCTC
1 GGTAATTCTACCCTAC-AGGGGTATTTC
*
87124140 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* **
87124167 GGTATTTCTACCCTACAAAGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
87124194 AGTAATTCTATCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
87124221 GGTAATTCTACCCTACCGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** * *
87124248 AATAATTCTACCATACAGGGGAATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
87124275 GGTAATTCTACCTTACAGAGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
87124302 GATAATTCTAC
1 GGTAATTCTAC
87124313 AACTTATCCA
Statistics
Matches: 143, Mismatches: 29, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
26 1 0.01
27 142 0.99
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:87139211 original size:30 final size:30
Alignment explanation
Indices: 87139153--87139212 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
87139143 TTCCCGAGCC
* *
87139153 TAGGGGCAAAAGTGTAATTATGTAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
87139183 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
87139213 GGTATTAAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:87146193 original size:38 final size:38
Alignment explanation
Indices: 87146122--87146194 Score: 92
Period size: 38 Copynumber: 1.9 Consensus size: 38
87146112 AAAGACTCGC
**
87146122 AGGCTTCGTGCTGGTAAAATATCCAGGTTAAATCCAGT
1 AGGCTTCGTGCTGGTAAAATATCCAGGAGAAATCCAGT
* ** *
87146160 AGGCTTCGTGTTGGTATTATATCCTGGAGAAATCC
1 AGGCTTCGTGCTGGTAAAATATCCAGGAGAAATCC
87146195 CCCAGGCCTA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 29 1.00
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.32
Consensus pattern (38 bp):
AGGCTTCGTGCTGGTAAAATATCCAGGAGAAATCCAGT
Found at i:87146341 original size:43 final size:43
Alignment explanation
Indices: 87146217--87146328 Score: 188
Period size: 43 Copynumber: 2.6 Consensus size: 43
87146207 ACTGGTATTA
* *
87146217 TATTTGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTG
*
87146260 TATTCAGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTG
*
87146303 TATTCGGGCCTTTGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
87146329 GTAATGCCAG
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 64 1.00
ACGTcount: A:0.12, C:0.25, G:0.32, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTG
Done.