Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 262 of 349
Found at i:87151612 original size:40 final size:40
Alignment explanation
Indices: 87151550--87151813 Score: 238
Period size: 40 Copynumber: 6.6 Consensus size: 40
87151540 CGGATGATAA
* * * *
87151550 CCGGGCTAAGTCTCGAAAGCATTTGTGCTAGTGGCTAAT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTAATAT
* * **
87151590 CCAGGCTAAGTCCCGAAGGCATTCGTGAAAGCTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAATAT
* * * * *
87151630 TCGGGCTAAGTACCAAAGGCATTCGTGCGAGCTACT-TTAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAATAT
* *
87151670 CCGGGCTAAGTCCCGAAGG-ACGTTGTGCGAGCTA-TTATAT
1 CCGGGCTAAGTCCCGAAGGCA-TTTGTGCGAG-TACTAATAT
*
87151710 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-TTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAATAT
* *
87151750 -CGGGATAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAATAT
*
87151789 CTGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
87151814 AGCTAGTGGC
Statistics
Matches: 191, Mismatches: 26, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
39 39 0.20
40 150 0.79
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAATAT
Found at i:87151795 original size:79 final size:80
Alignment explanation
Indices: 87151596--87151813 Score: 255
Period size: 79 Copynumber: 2.7 Consensus size: 80
87151586 AATTCCAGGC
* ** * * * *
87151596 TAAGTCCCGAAGGCATTCGTGAAAGCTACTAT-ATTCGGGCTAAGTACCAAAGGCATTCGTGCGA
1 TAAGTCCCGAAGGCATTTGTGCGAGCTACTATAACT-GGGCTAAGTCCCGAAGGCATTTGTGCGA
*
87151660 GCTACTTTATCCGGGC
65 GCTACTTTATCCGGGA
* * * *
87151676 TAAGTCCCGAAGG-ACGTTGTGCGAGCTATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGA
1 TAAGTCCCGAAGGCA-TTTGTGCGAGCTACTATAACTGGGCTAAGTCCCGAAGGCATTTGTGCGA
*
87151740 GTTA-TTATAT-CGGGA
65 GCTACTT-TATCCGGGA
*
87151755 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACTGGGCTAAGTCCCGAAGGCATTTG
1 TAAGTCCCGAAGGCATTTGTGCGAGCTACTATAACTGGGCTAAGTCCCGAAGGCATTTG
87151814 AGCTAGTGGC
Statistics
Matches: 116, Mismatches: 18, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
79 59 0.51
80 57 0.49
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
TAAGTCCCGAAGGCATTTGTGCGAGCTACTATAACTGGGCTAAGTCCCGAAGGCATTTGTGCGAG
CTACTTTATCCGGGA
Found at i:87151828 original size:79 final size:80
Alignment explanation
Indices: 87151546--87151836 Score: 295
Period size: 80 Copynumber: 3.7 Consensus size: 80
87151536 TATTCGGATG
* * * * *
87151546 ATAACCGGGCTAAGTCTCGAAAGCATTTGTGCTAGTGGCTA-ATTCCAGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-TCCGGGCTAAGTCCCGAAGGC
* **
87151610 ATTCGTGAAAGCTACT
65 ATTTGTGCGAGCTACT
** * * * *
87151626 ATATTCGGGCTAAGTACCAAAGGCATTCGTGCGAGCT-ACTTTATCCGGGCTAAGTCCCGAAGG-
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAGTCCCGAAGGC
* *
87151689 ACGTTGTGCGAGCTATT
65 A-TTTGTGCGAGCTACT
* * * *
87151706 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATAT-CGGGATAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
*
87151770 TTTGTGCGAGTTACT
66 TTTGTGCGAGCTACT
* * * *
87151785 ATAACTGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAA
87151837 ACTCCGAAGG
Statistics
Matches: 171, Mismatches: 34, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
79 73 0.43
80 96 0.56
81 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGCTACT
Found at i:87159763 original size:40 final size:39
Alignment explanation
Indices: 87159715--87159998 Score: 333
Period size: 40 Copynumber: 7.2 Consensus size: 39
87159705 GATGATAATT
* * *
87159715 GGGCTAAGTCCCGAAAGCATTTGTGCTAGTGGCTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATA-TCC
*
87159755 GGGCTAAGTCCCGAAGGC-TTCGTGCGAGCTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCC
* * *
87159794 GGGCTAAGTCCCGAAGGGATTCGTGCGAGCTACTTTATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCC
* * *
87159834 GGGCTAAGTCCCAAAGGCGTTTGTGCGAGCTATTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCC
*
87159874 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCC
*
87159913 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCC
* * *
87159953 GGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATATCC
87159993 -GGCTAA
1 GGGCTAA
87159999 ACTCCGAAGG
Statistics
Matches: 219, Mismatches: 20, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
39 76 0.35
40 143 0.65
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (39 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCC
Found at i:87159990 original size:119 final size:119
Alignment explanation
Indices: 87159715--87159998 Score: 378
Period size: 119 Copynumber: 2.4 Consensus size: 119
87159705 GATGATAATT
*
87159715 GGGCTAAGTCCCGAAAGCATTTGTGCTAGTGGCTA-ATTCCGGGCTAAGTCCCGAAGGCTTCGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCTATA-TCCGGGCTAAGTCCCGAAGGCTTCGTG
* * *
87159779 CGAGCTACTATATCCGGGCTAAGTCCCGAAGGGATTCGTGCGAGCTACTTTATCC
65 CGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAACC
* * * ** *
87159834 GGGCTAAGTCCCAAAGGCGTTTGTGCGAGCT-ATTATATCCGGGCTAAGTCCCGAAGGCATTTGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGGCTATATCCGGGCTAAGTCCCGAAGGC-TTCGT
* * * *
87159898 GCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
64 GCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAACC
*
87159953 GGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAA
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCTATATCCGGGCTAA
87159999 ACTCCGAAGG
Statistics
Matches: 141, Mismatches: 20, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
118 7 0.05
119 117 0.83
120 17 0.12
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (119 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCTATATCCGGGCTAAGTCCCGAAGGCTTCGTGC
GAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAACC
Found at i:87160008 original size:79 final size:79
Alignment explanation
Indices: 87159715--87159998 Score: 360
Period size: 79 Copynumber: 3.6 Consensus size: 79
87159705 GATGATAATT
* * * *
87159715 GGGCTAAGTCCCGAAAGCATTTGTGCTAGTGGCTA-ATTCCGGGCTAAGTCCCGAAGGCTTCGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-TCCGGGCTAAGTCCCGAAGGCTTTGTG
87159779 CGAGCTACTATATCC
65 CGAGCTACTATATCC
* * * *
87159794 GGGCTAAGTCCCGAAGGGATTCGTGCGAGCT-ACTTTATCCGGGCTAAGTCCCAAAGGCGTTTGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAGTCCCGAAGGC-TTTGT
*
87159858 GCGAGCTATTATATCC
64 GCGAGCTACTATATCC
* *
87159874 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCCCGAAGGC-TTTGTG
* *
87159938 CGAGTTACTATAACC
65 CGAGCTACTATATCC
* * *
87159953 GGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAA
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAA
87159999 ACTCCGAAGG
Statistics
Matches: 177, Mismatches: 23, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
79 123 0.69
80 54 0.31
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (79 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCCCGAAGGCTTTGTGC
GAGCTACTATATCC
Found at i:87163169 original size:38 final size:40
Alignment explanation
Indices: 87163103--87163177 Score: 118
Period size: 38 Copynumber: 1.9 Consensus size: 40
87163093 ATTTGATGTG
87163103 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAAA
1 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAAA
* *
87163143 TATCCGGG-TTAAA-TCCCGTAGGCTTCGTGCTGGTA
1 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTA
87163178 TTATATTTGG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
38 20 0.61
39 5 0.15
40 8 0.24
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (40 bp):
TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAAA
Found at i:87163272 original size:43 final size:43
Alignment explanation
Indices: 87163219--87163459 Score: 392
Period size: 43 Copynumber: 5.6 Consensus size: 43
87163209 GCTGATATTA
*
87163219 TATTCTGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * *
87163262 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCAGTGATATG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
87163305 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * *
87163348 TATTCGGGCCTTCGTGCCTAGCAAGCTTCATGCTGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
87163391 TATTCAGGCCTTCGTGCCTAGCAGGCTTCGTGCTGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
87163434 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
87163460 GTAATGCCGG
Statistics
Matches: 184, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 184 1.00
ACGTcount: A:0.12, C:0.25, G:0.31, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:87167008 original size:39 final size:40
Alignment explanation
Indices: 87166913--87167174 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
87166903 TTGAATGATG
*
87166913 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
87166951 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
87166992 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
87167031 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
87167070 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
87167109 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
87167148 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
87167175 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:87174379 original size:41 final size:41
Alignment explanation
Indices: 87174322--87174464 Score: 162
Period size: 41 Copynumber: 3.5 Consensus size: 41
87174312 TTATTCCATG
* * * *
87174322 AATTGAACATACATGCCCCTATTTGTACTTTAGTGCGCCTA
1 AATTGCACATACATGCCCCTATTTGTACTTTAATACCCCTA
* * * * *
87174363 AATTGCATATACATGCCCTTATTCGTACTTCAATACCCCTG
1 AATTGCACATACATGCCCCTATTTGTACTTTAATACCCCTA
* * *
87174404 AATTGCACATACATGCCACTATTTGTACTTTGATACCCCTG
1 AATTGCACATACATGCCCCTATTTGTACTTTAATACCCCTA
87174445 AATTGCACATA-AGTGCCCCT
1 AATTGCACATACA-TGCCCCT
87174465 GTTTACACTC
Statistics
Matches: 85, Mismatches: 16, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
40 1 0.01
41 84 0.99
ACGTcount: A:0.27, C:0.27, G:0.13, T:0.33
Consensus pattern (41 bp):
AATTGCACATACATGCCCCTATTTGTACTTTAATACCCCTA
Found at i:87174479 original size:82 final size:82
Alignment explanation
Indices: 87174320--87174479 Score: 180
Period size: 82 Copynumber: 2.0 Consensus size: 82
87174310 AATTATTCCA
* * * * *
87174320 TGAATTGAACATACATGCCCCTATTTGTACTTTAGTGCGCCTAAATTGCATATACATGCCCTTAT
1 TGAATTGAACATACATGCCACTATTTGTACTTTAGTACCCCTAAATTGCACATACATGCCCCTAT
** *
87174385 TCGTACTTCAATACCCC
66 TCACACTCCAATACCCC
* *
87174402 TGAATTGCACATACATGCCACTATTTGTACTTT-GATACCCCTGAATTGCACATA-AGTGCCCCT
1 TGAATTGAACATACATGCCACTATTTGTACTTTAG-TACCCCTAAATTGCACATACA-TGCCCCT
* *
87174465 GTTTACACTCCAATA
64 ATTCACACTCCAATA
87174480 ACATTGACTA
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
81 2 0.03
82 62 0.97
ACGTcount: A:0.28, C:0.27, G:0.12, T:0.33
Consensus pattern (82 bp):
TGAATTGAACATACATGCCACTATTTGTACTTTAGTACCCCTAAATTGCACATACATGCCCCTAT
TCACACTCCAATACCCC
Found at i:87182220 original size:28 final size:27
Alignment explanation
Indices: 87182169--87182253 Score: 98
Period size: 28 Copynumber: 3.1 Consensus size: 27
87182159 TGGCTGCTAG
* *
87182169 AACAGATATTGTGACAGAGTCACCAGA
1 AACAGATATTGTGGCAGAGCCACCAGA
* *
87182196 TACAGATAATTGTGGCAGGGCCACCAGA
1 AACAGAT-ATTGTGGCAGAGCCACCAGA
* *
87182224 AATAGATGTTTGTGGCAGAGCCACCAGA
1 AACAGAT-ATTGTGGCAGAGCCACCAGA
87182252 AA
1 AA
87182254 GCTTCCTCCA
Statistics
Matches: 48, Mismatches: 9, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
27 6 0.12
28 42 0.88
ACGTcount: A:0.36, C:0.19, G:0.26, T:0.19
Consensus pattern (27 bp):
AACAGATATTGTGGCAGAGCCACCAGA
Found at i:87187206 original size:118 final size:119
Alignment explanation
Indices: 87187031--87187252 Score: 308
Period size: 118 Copynumber: 1.9 Consensus size: 119
87187021 TACTCGTTCA
* * *
87187031 AATGCCTTCGGGACATAGCCCGGTTATAGTGACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
*
87187096 ATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
87187150 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGG
* * *
87187212 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
87187253 CATCATTCAA
Statistics
Matches: 91, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
117 4 0.04
118 67 0.74
119 20 0.22
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (119 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:87187252 original size:40 final size:40
Alignment explanation
Indices: 87187010--87187252 Score: 300
Period size: 40 Copynumber: 6.1 Consensus size: 40
87187000 CGGAATTTAA
** *
87187010 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
87187050 CCGGTTATAGTGACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
87187090 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
87187130 CCGGATTTAGTAACTCGCAC-AATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
87187168 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
87187208 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
87187248 CCGGA
1 CCGGA
87187253 CATCATTCAA
Statistics
Matches: 180, Mismatches: 15, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
38 25 0.14
39 22 0.12
40 121 0.67
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:87236510 original size:81 final size:81
Alignment explanation
Indices: 87236370--87236520 Score: 207
Period size: 81 Copynumber: 1.9 Consensus size: 81
87236360 AAATTGTACA
* * * *
87236370 GCACTAAGTGCTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTG
1 GCACTAAGTGCTGCGATCTAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTG
87236435 TGCGAATGACCATGCG
66 TGCGAATGACCATGCG
** *
87236451 GCACTAAGTG-TGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAG
1 GCACTAAGTGCTGCGA-TCTAACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAG
87236514 TGTGCGA
64 TGTGCGA
87236521 GTTGATTGTA
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
80 6 0.10
81 55 0.90
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGCTGCGATCTAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTG
TGCGAATGACCATGCG
Found at i:87236519 original size:55 final size:52
Alignment explanation
Indices: 87236369--87236522 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
87236359 TAAATTGTAC
* *
87236369 AGCACTAAGTGCTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTG-TGCGATTTGACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * * *
87236423 ATGCACTAAGTGTGCGA-ATGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* *
87236477 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGT
87236523 TGATTGTATA
Statistics
Matches: 84, Mismatches: 11, Indels: 9
0.81 0.11 0.09
Matches are distributed among these distances:
52 2 0.02
53 23 0.27
54 25 0.30
55 34 0.40
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:87236527 original size:27 final size:27
Alignment explanation
Indices: 87236370--87236525 Score: 154
Period size: 27 Copynumber: 5.7 Consensus size: 27
87236360 AAATTGTACA
* *
87236370 GCACTAAGTGCTGCGATTTGACTATGTT
1 GCACTAAGTG-TGCGAGTTGACTATGTG
** *
87236398 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAGTTGACTATG-TG
* * *
87236425 GCACTAAGTGTGCGA-ATGACCATGCG
1 GCACTAAGTGTGCGAGTTGACTATGTG
* *
87236451 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAGT-TGACTATGTG
* * *
87236479 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAGTTGACTATGTG
87236506 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAGTTGA
87236526 TTGTATAGCA
Statistics
Matches: 107, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
26 22 0.21
27 52 0.49
28 33 0.31
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGTTGACTATGTG
Found at i:87236536 original size:27 final size:27
Alignment explanation
Indices: 87236369--87236542 Score: 136
Period size: 27 Copynumber: 6.4 Consensus size: 27
87236359 TAAATTGTAC
* *
87236369 AGCACTAAGTGCTGCGATTTGACTATGT
1 AGCACTAAGTG-TGCGAGTTGATTATGT
* ** *
87236397 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGTTGATTATGT
* ** *
87236423 ATGCACTAAGTGTGCGA-ATGACCATGC
1 A-GCACTAAGTGTGCGAGTTGATTATGT
* * *
87236450 GGCACTAAGTGTGCGAGTCTAACTATGT
1 AGCACTAAGTGTGCGAGT-TGATTATGT
* *
87236478 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * *
87236505 GGCACTAAGTGTGCGAGTTGATTGTAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
87236532 AGCACTGAGTG
1 AGCACTAAGTG
87236543 CGGGCTCAAT
Statistics
Matches: 118, Mismatches: 24, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
26 22 0.19
27 64 0.54
28 32 0.27
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:87244406 original size:27 final size:27
Alignment explanation
Indices: 87244376--87244552 Score: 160
Period size: 27 Copynumber: 6.5 Consensus size: 27
87244366 AAATTGTACA
87244376 GCACTAAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTT
** * *
87244403 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGATTTGACTATGTT
** * **
87244430 GCACTAAGTGTGCGAAATGACCATGCG
1 GCACTAAGTGTGCGATTTGACTATGTT
* * *
87244457 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTT
* * *
87244485 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGATTTGACTATGTT
*
87244512 GCACTAAGTGTGCGAGTTGA-T-TGTAT
1 GCACTAAGTGTGCGATTTGACTATGT-T
*
87244538 AGCACTGAGTGTGCG
1 -GCACTAAGTGTGCG
87244553 GGCTCAATAT
Statistics
Matches: 124, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
25 2 0.02
26 1 0.01
27 100 0.81
28 21 0.17
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTT
Found at i:87244492 original size:82 final size:81
Alignment explanation
Indices: 87244376--87244526 Score: 214
Period size: 82 Copynumber: 1.9 Consensus size: 81
87244366 AAATTGTACA
* * * *
87244376 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGATCTAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
87244440 TGCGAAATGACCATGCG
65 TGCGAAATGACCATGCG
** *
87244457 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGA-TCTAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
87244522 TGCGA
65 TGCGA
87244527 GTTGATTGTA
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
81 16 0.26
82 45 0.74
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGATCTAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAAATGACCATGCG
Found at i:87244543 original size:82 final size:81
Alignment explanation
Indices: 87244368--87244552 Score: 201
Period size: 82 Copynumber: 2.3 Consensus size: 81
87244358 GCGGGATTAA
* * * *
87244368 ATTGTACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGATCTAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
87244433 CTAAGTGTGCGAAATG
66 CTAAGTGTGCGAAATG
*** * * ** *
87244449 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGA-TCTAACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
**
87244513 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAAATG
* *
87244531 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
87244553 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 21, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
81 19 0.23
82 62 0.77
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGATCTAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAAATG
Found at i:87249560 original size:27 final size:26
Alignment explanation
Indices: 87249498--87249592 Score: 109
Period size: 27 Copynumber: 3.5 Consensus size: 26
87249488 AGCATGGCTG
* ** *
87249498 CCAGAAAAGATAATGTAACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
87249524 CTAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
87249552 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
*
87249579 CCAGATCAGATAAT
1 CCAGAACAGATAAT
87249593 TTGTGACATA
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
26 6 0.10
27 38 0.64
28 15 0.25
ACGTcount: A:0.41, C:0.20, G:0.22, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:87249609 original size:28 final size:27
Alignment explanation
Indices: 87249498--87249610 Score: 86
Period size: 27 Copynumber: 4.1 Consensus size: 27
87249488 AGCATGGCTG
* * *
87249498 CCAGAAAAGATA-ATGTAACAGAGTCA
1 CCAGAACAGATATATGTGACAGAGACA
* * *
87249524 CTAGATACAGATA-ATCGTGGCAGAGCCA
1 CCAGA-ACAGATATAT-GTGACAGAGACA
* *
87249552 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGACA
* * *
87249579 CCAGATCAGATAATTTGTGACATAGACA
1 CCAGAACAGAT-ATATGTGACAGAGACA
87249607 CCAG
1 CCAG
87249611 CACGCTTCCT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
26 4 0.06
27 37 0.51
28 31 0.43
ACGTcount: A:0.40, C:0.20, G:0.22, T:0.18
Consensus pattern (27 bp):
CCAGAACAGATATATGTGACAGAGACA
Found at i:87255656 original size:43 final size:42
Alignment explanation
Indices: 87255608--87255721 Score: 138
Period size: 43 Copynumber: 2.7 Consensus size: 42
87255598 GTGTGATTTA
* *
87255608 GTGTAAAACCATGTCTGGGACATTGGCATCGATATGAGATTAC
1 GTGTAAGACCATGTCTGGGACA-TGGCATCGATATGAGATAAC
* * *
87255651 GTGTAAGACCCTGTCTGGGACAGAGGCATCGATATGTGATAAC
1 GTGTAAGACCATGTCTGGGACA-TGGCATCGATATGAGATAAC
* * *
87255694 ATGTAAGACCATATCTGGGATATGGCAT
1 GTGTAAGACCATGTCTGGGACATGGCAT
87255722 TGTCTGTGAT
Statistics
Matches: 60, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
42 5 0.08
43 55 0.92
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGATATGAGATAAC
Found at i:87259633 original size:13 final size:13
Alignment explanation
Indices: 87259615--87259639 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
87259605 AATTGATATA
87259615 TGTGAAAATTTTG
1 TGTGAAAATTTTG
87259628 TGTGAAAATTTT
1 TGTGAAAATTTT
87259640 AACATTTGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.48
Consensus pattern (13 bp):
TGTGAAAATTTTG
Found at i:87261628 original size:46 final size:46
Alignment explanation
Indices: 87261561--87261730 Score: 168
Period size: 46 Copynumber: 3.7 Consensus size: 46
87261551 AACCCGCCCC
* *
87261561 TAAGTGAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
* *
87261607 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * * *
87261655 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
* *
87261700 TAGGTGAACTTAGACTCAACTCAACGAGTTC
1 TAAGTGAACTCAGACTCAACTCAACGAGTTC
87261731 AGATGCTCAA
Statistics
Matches: 101, Mismatches: 14, Indels: 18
0.76 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 1 0.01
46 54 0.53
47 28 0.28
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:87261694 original size:93 final size:93
Alignment explanation
Indices: 87261566--87261736 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
87261556 GCCCCTAAGT
* * * *
87261566 GAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
87261631 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCAGATGCCTAGTTACATCTCAC
* * * *
87261659 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTTAGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
87261724 CGAGTTCAGATGC
66 CGAGTTCAGATGC
87261737 TCAACCATCC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATCTCAC
Found at i:87262192 original size:30 final size:30
Alignment explanation
Indices: 87262158--87262217 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
87262148 ATTTAATACG
87262158 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
87262188 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
87262218 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:87264362 original size:23 final size:22
Alignment explanation
Indices: 87264336--87264378 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
87264326 TTATGAAACA
*
87264336 TATGTTTTGGTATGACTTTGGCT
1 TATGTTTTGGCATGA-TTTGGCT
87264359 TATGTTTTGGCATGATTTGG
1 TATGTTTTGGCATGATTTGG
87264379 TATGGATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.14, C:0.07, G:0.28, T:0.51
Consensus pattern (22 bp):
TATGTTTTGGCATGATTTGGCT
Found at i:87290700 original size:28 final size:28
Alignment explanation
Indices: 87290635--87290720 Score: 102
Period size: 28 Copynumber: 3.0 Consensus size: 28
87290625 TCCACATACT
* *
87290635 TGTATGTGGCCCACTAGGCCCAATCTC-
1 TGTATGTGGCCCATTAGGCCCAATCACA
* *
87290662 TTTCATATGGCCCATTAGGCCCAATCACA
1 TGT-ATGTGGCCCATTAGGCCCAATCACA
*
87290691 TGTATGTGGCCCATTAGTCCCAGATCACA
1 TGTATGTGGCCCATTAGGCCCA-ATCACA
87290720 T
1 T
87290721 TCATATGACC
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
27 2 0.04
28 38 0.78
29 9 0.18
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (28 bp):
TGTATGTGGCCCATTAGGCCCAATCACA
Found at i:87290733 original size:56 final size:57
Alignment explanation
Indices: 87290635--87290748 Score: 151
Period size: 56 Copynumber: 2.0 Consensus size: 57
87290625 TCCACATACT
* * * *
87290635 TGTATGTGGCCCACTAGGCCCAATCTCTTTCATATGGCCCATTAGG-CCCAATCACA
1 TGTATGTGGCCCACTAGGCCCAATCACATTCATATGGACCATTAGGTCCAAATCACA
* *
87290691 TGTATGTGGCCCATTAGTCCCAGATCACATTCATAT-GACCATTAGGTCCAAATCACA
1 TGTATGTGGCCCACTAGGCCCA-ATCACATTCATATGGACCATTAGGTCCAAATCACA
87290748 T
1 T
87290749 TTACAGTCAT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
56 29 0.58
57 21 0.42
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (57 bp):
TGTATGTGGCCCACTAGGCCCAATCACATTCATATGGACCATTAGGTCCAAATCACA
Found at i:87295449 original size:16 final size:16
Alignment explanation
Indices: 87295430--87295482 Score: 70
Period size: 16 Copynumber: 3.3 Consensus size: 16
87295420 ATGCTTTTGA
*
87295430 CTTTTTGGCATTTTGG
1 CTTTTTGGCATTTCGG
** *
87295446 CTTTTCAGCATTTCAG
1 CTTTTTGGCATTTCGG
87295462 CTTTTTGGCATTTCGG
1 CTTTTTGGCATTTCGG
87295478 CTTTT
1 CTTTT
87295483 GTCAATCTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.09, C:0.19, G:0.19, T:0.53
Consensus pattern (16 bp):
CTTTTTGGCATTTCGG
Found at i:87301830 original size:7 final size:7
Alignment explanation
Indices: 87301818--87301842 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
87301808 GCTATACAAT
87301818 CCCCACA
1 CCCCACA
87301825 CCCCACA
1 CCCCACA
87301832 CCCCACA
1 CCCCACA
87301839 CCCC
1 CCCC
87301843 TCAAACACTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.24, C:0.76, G:0.00, T:0.00
Consensus pattern (7 bp):
CCCCACA
Found at i:87308963 original size:16 final size:16
Alignment explanation
Indices: 87308922--87308974 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
87308912 TCACTAGGAA
*
87308922 ATATGTGATTATGAGCT
1 ATATGTGATTATGTG-T
* *
87308939 -CATGAGATTATGTGT
1 ATATGTGATTATGTGT
*
87308954 ATATGTGATTATGTGA
1 ATATGTGATTATGTGT
87308970 ATATG
1 ATATG
87308975 GGTGCTAGTC
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
15 1 0.03
16 28 0.97
ACGTcount: A:0.30, C:0.04, G:0.25, T:0.42
Consensus pattern (16 bp):
ATATGTGATTATGTGT
Found at i:87318222 original size:46 final size:48
Alignment explanation
Indices: 87318117--87318232 Score: 146
Period size: 46 Copynumber: 2.4 Consensus size: 48
87318107 TGTCTTCGAC
** * *
87318117 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--ATATATATCTAAT
* *
87318167 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAG-C-TATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATCTAAT
87318213 ATGGACTTACATGGCTCATT
1 ATGGACTTACATGGCTCATT
87318233 TCTATCCTGT
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
46 30 0.51
49 1 0.02
50 28 0.47
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.36
Consensus pattern (48 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATCTAAT
Found at i:87320126 original size:15 final size:14
Alignment explanation
Indices: 87320088--87320140 Score: 79
Period size: 14 Copynumber: 3.7 Consensus size: 14
87320078 TGTTTTTCGT
*
87320088 AAAATGATTTCTGA
1 AAAATGATTTCTGG
*
87320102 AAAATAATTTCTTGG
1 AAAATGATTTC-TGG
87320117 AAAATGATTTCTGG
1 AAAATGATTTCTGG
87320131 AAAATGATTT
1 AAAATGATTT
87320141 ACTTTTCTGG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
14 23 0.66
15 12 0.34
ACGTcount: A:0.42, C:0.06, G:0.15, T:0.38
Consensus pattern (14 bp):
AAAATGATTTCTGG
Found at i:87322478 original size:55 final size:53
Alignment explanation
Indices: 87322399--87322645 Score: 170
Period size: 55 Copynumber: 4.7 Consensus size: 53
87322389 TTAAGGATAC
*
87322399 CATGTAAGACCATG-CTAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAAT
1 CATGTAAGACCATGTC-AAGACATGG-AATTGGTAA-GTTTCTAAGGCAAGGAAAT
* * * * ***
87322454 CATGTAATACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCT
1 CATGTAAGACCATGTCAAGACATGGAATTGGTAAGTT--TCTAAGGC-AAGGAAAT
* * * * * * *
87322510 -ATGTAAGACCATGCCAAGGCATGGCATTAGTGAG-TTCATAAGGCAAGGATAC
1 CATGTAAGACCATGTCAAGACATGGAATTGGTAAGTTTC-TAAGGCAAGGAAAT
* *
87322562 CATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---AAGGATAC
1 CATGTAAGACCATGTCAAGACATGG-AATTGGTAAGTTTCTAAGGCAAGGAAAT
* * *
87322611 CACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 CATGTAAGACCATGTCAAGACATGG-AATTGGTAAG
87322646 GTACCCACGT
Statistics
Matches: 157, Mismatches: 27, Indels: 22
0.76 0.13 0.11
Matches are distributed among these distances:
49 40 0.25
52 7 0.04
53 36 0.23
54 12 0.08
55 56 0.36
56 6 0.04
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (53 bp):
CATGTAAGACCATGTCAAGACATGGAATTGGTAAGTTTCTAAGGCAAGGAAAT
Found at i:87322597 original size:108 final size:110
Alignment explanation
Indices: 87322400--87322598 Score: 287
Period size: 108 Copynumber: 1.8 Consensus size: 110
87322390 TAAGGATACC
* * * *
87322400 ATGTAAGACCATGCTAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAATACC
1 ATGTAAGACCATGCCAAGGCATGGAAATTAGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACC
*
87322465 ATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCT
66 ATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCT
* * *
87322510 ATGTAAGACCATGCCAAGGCATGG-CATTAGTGA-G-TTCATAAGGCAAGGATACCATGTAAGAC
1 ATGTAAGACCATGCCAAGGCATGGAAATTAGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAGAC
*
87322572 CATGTCAAGACATGGCAATGGTAAGTT
65 CATGTCAAGACATGGCAATGATAAGTT
87322599 TCAAAAGGAT
Statistics
Matches: 79, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.59
109 6 0.08
110 23 0.29
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.24
Consensus pattern (110 bp):
ATGTAAGACCATGCCAAGGCATGGAAATTAGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACC
ATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCT
Found at i:87325322 original size:24 final size:24
Alignment explanation
Indices: 87325295--87325345 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
87325285 ATTTAGCAGT
* *
87325295 GAGGCCAGATGTTAGAGCATCTGC
1 GAGGACAGATGCTAGAGCATCTGC
**
87325319 GAGGACTTATGCTAGAGCATCTGC
1 GAGGACAGATGCTAGAGCATCTGC
87325343 GAG
1 GAG
87325346 AACTTATGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.25, C:0.20, G:0.33, T:0.22
Consensus pattern (24 bp):
GAGGACAGATGCTAGAGCATCTGC
Found at i:87325350 original size:24 final size:24
Alignment explanation
Indices: 87325307--87325356 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
87325297 GGCCAGATGT
*
87325307 TAGAGCATCTGCGAGGACTTATGC
1 TAGAGCATCTGCGAGAACTTATGC
87325331 TAGAGCATCTGCGAGAACTTATGC
1 TAGAGCATCTGCGAGAACTTATGC
87325355 TA
1 TA
87325357 TTCGTGCTCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (24 bp):
TAGAGCATCTGCGAGAACTTATGC
Found at i:87327972 original size:18 final size:18
Alignment explanation
Indices: 87327949--87327985 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
87327939 CAAAGTTGAG
87327949 TTTTAGTACAGCTTTCTA
1 TTTTAGTACAGCTTTCTA
87327967 TTTTAGTACAGCTTTCTA
1 TTTTAGTACAGCTTTCTA
87327985 T
1 T
87327986 CCTCAAACCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.16, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTTAGTACAGCTTTCTA
Found at i:87329427 original size:24 final size:24
Alignment explanation
Indices: 87329400--87329452 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
87329390 AGGCTGTCAA
*
87329400 GAGAATATTTAGGAGCTGATAAGG
1 GAGAAGATTTAGGAGCTGATAAGG
* *
87329424 GAGAGGATTTAGGAGCTGATTAGG
1 GAGAAGATTTAGGAGCTGATAAGG
87329448 GAGAA
1 GAGAA
87329453 CGATGTTGGC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.36, C:0.04, G:0.38, T:0.23
Consensus pattern (24 bp):
GAGAAGATTTAGGAGCTGATAAGG
Found at i:87330922 original size:27 final size:27
Alignment explanation
Indices: 87330882--87330990 Score: 157
Period size: 27 Copynumber: 4.1 Consensus size: 27
87330872 AGGAAGCGTC
* *
87330882 CTGGTGGCTATGCCACATTTATCTGAT
1 CTGGTGGCTCTGCCACATTTATCTGTT
*
87330909 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
*
87330936 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
* *
87330963 CTGGTGACTCTGTCACA-TTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
87330989 CT
1 CT
87330991 TGCAGCAATG
Statistics
Matches: 75, Mismatches: 7, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
26 11 0.15
27 64 0.85
ACGTcount: A:0.16, C:0.25, G:0.21, T:0.39
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTTATCTGTT
Found at i:87334477 original size:39 final size:40
Alignment explanation
Indices: 87334353--87334537 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
87334343 GCTACTCGTT
*
87334353 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* * *
87334393 CAATTGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
87334433 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
87334472 TAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAC-CA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-T-CGCA
*
87334513 CAGA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
87334538 CATCATTCAA
Statistics
Matches: 120, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.26
40 76 0.63
41 10 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:87341628 original size:40 final size:40
Alignment explanation
Indices: 87341591--87341775 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
87341581 GCTACTCGTT
*
87341591 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* * *
87341631 CAATTGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
87341671 CAAATGCCTTCGGG-CTTAGCCCAGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
87341710 TAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
87341751 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
87341776 CATCATTCAA
Statistics
Matches: 119, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.26
40 74 0.62
41 12 0.10
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:87341718 original size:79 final size:81
Alignment explanation
Indices: 87341591--87341773 Score: 196
Period size: 79 Copynumber: 2.3 Consensus size: 81
87341581 GCTACTCGTT
* ** * *
87341591 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTTGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCC-TTCGGATCTTAACCCG
* *
87341655 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* * **
87341671 CAAATGCCTTCGGG-CTTAGCCCAGAAT-TAGTATCTCGCATAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCC-GAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
87341734 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
87341751 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
87341774 GACATCATTC
Statistics
Matches: 86, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
78 5 0.06
79 49 0.57
80 32 0.37
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:87347000 original size:24 final size:24
Alignment explanation
Indices: 87346973--87347073 Score: 157
Period size: 24 Copynumber: 4.2 Consensus size: 24
87346963 AAGGCTGTCA
*
87346973 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
87346997 GGAGAGGATTTAGGAGATGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
87347021 GGAGAGGATGTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* *
87347045 GGAGAGGATTTAGGAGTTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
87347069 GGAGA
1 GGAGA
87347074 ACGGTGTTGG
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 70 1.00
ACGTcount: A:0.35, C:0.02, G:0.43, T:0.21
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:87348549 original size:27 final size:27
Alignment explanation
Indices: 87348505--87348609 Score: 124
Period size: 27 Copynumber: 3.9 Consensus size: 27
87348495 AGGAAGCGTC
* *
87348505 CTGGTGGCTATGCGACATTTATCTGAT
1 CTGGTGGCTCTGCCACATTTATCTGAT
* *
87348532 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGAT
*
87348559 CTGGTGGCTCTGCCACAATTATCT-ATT
1 CTGGTGGCTCTGCCACATTTATCTGA-T
* *
87348586 CTGGTGACTCTGTCACA-TTATCTG
1 CTGGTGGCTCTGCCACATTTATCTG
87348610 TTCTTGCAGC
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 6 0.09
27 61 0.91
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTTATCTGAT
Found at i:87348589 original size:54 final size:53
Alignment explanation
Indices: 87348505--87348613 Score: 148
Period size: 54 Copynumber: 2.0 Consensus size: 53
87348495 AGGAAGCGTC
* * *
87348505 CTGGTGGCTATGCGACATTTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACAT-TATCTGTT
* *
87348559 CTGGTGGCTCTGCCACAATTATCT-ATTCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGA-TCTGGTGACTCTGCCACATTATCTGTT
87348612 CT
1 CT
87348614 TGCAGCAATG
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
53 11 0.22
54 38 0.78
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.39
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
Found at i:87350616 original size:55 final size:54
Alignment explanation
Indices: 87350539--87350794 Score: 226
Period size: 55 Copynumber: 4.8 Consensus size: 54
87350529 CATTAGGGTT
*
87350539 TAAGGATACCATGTAAGACCATG-CTAAGGCATGGCAATTGGTAAGGTTTTTAAGG
1 TAAGGATACCATGTAAGACCATGTC-AAGGCATGGCAATTGGTAA-GTTTATAAGG
* * * * *
87350594 TAAGGAAATCATGTAAGACCATGTCAAGACATGG-TATTGATAAGTTACTATAAGG
1 TAAGGATACCATGTAAGACCATGTCAAGGCATGGCAATTGGTAAGTT--TATAAGG
* * * * * *
87350649 CAAAGG-TCCCATCTAAGACCATGCCAAGGCATGGC-ATTGGTGAGTTCATAAGG
1 -TAAGGATACCATGTAAGACCATGTCAAGGCATGGCAATTGGTAAGTTTATAAGG
* * *
87350702 CAAGGATACCATGTAAGACCATGTCAAGTCATGGCAA-TGGTAAGTTT-CAA--
1 TAAGGATACCATGTAAGACCATGTCAAGGCATGGCAATTGGTAAGTTTATAAGG
* * * *
87350752 -AAGGATACCACGTAAGACCATGACAAGTCATGG-AAATGGTAAG
1 TAAGGATACCATGTAAGACCATGTCAAGGCATGGCAATTGGTAAG
87350795 GTACCCGTGT
Statistics
Matches: 167, Mismatches: 26, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
48 2 0.01
49 38 0.23
52 6 0.04
53 42 0.25
54 8 0.05
55 66 0.40
56 5 0.03
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (54 bp):
TAAGGATACCATGTAAGACCATGTCAAGGCATGGCAATTGGTAAGTTTATAAGG
Found at i:87350746 original size:108 final size:110
Alignment explanation
Indices: 87350547--87350747 Score: 280
Period size: 108 Copynumber: 1.8 Consensus size: 110
87350537 TTTAAGGATA
* * ** * *
87350547 CCATGTAAGACCATGCTAAGGCATGGCAATTGGTAAGGTTTTTAAGGTAAGGAAATCATGTAAGA
1 CCATCTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTCATAAGGCAAGGAAACCATGTAAGA
* *
87350612 CCATGTCAAGACATGGTATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* *
87350657 CCATCTAAGACCATGCCAAGGCATGGC-ATTGGTGA-GTTCATAAGGCAAGGATACCATGTAAGA
1 CCATCTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTCATAAGGCAAGGAAACCATGTAAGA
* *
87350720 CCATGTCAAGTCATGGCAATGGTAAGTT
66 CCATGTCAAGACATGGCAATGATAAGTT
87350748 TCAAAAGGAT
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
108 47 0.59
109 7 0.09
110 25 0.32
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (110 bp):
CCATCTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTCATAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:87355730 original size:50 final size:50
Alignment explanation
Indices: 87355631--87355744 Score: 140
Period size: 50 Copynumber: 2.3 Consensus size: 50
87355621 TGGTTGGTAT
*
87355631 CAAAGCTAGCCAAGTTGGGTTAAGGCTCATGAGGCTAGAGTTCACCGAGC
1 CAAAGCTAGCCAAGTTGGGTTAAGACTCATGAGGCTAGAGTTCACCGAGC
* * * **
87355681 CAAAGCTAGCTAGGTTGGGTATAA-ACTCTTGAGGCTAGAGTTCTTCGAGC
1 CAAAGCTAGCCAAGTTGGGT-TAAGACTCATGAGGCTAGAGTTCACCGAGC
* *
87355731 TAGAGCTAGCCAAG
1 CAAAGCTAGCCAAG
87355745 ATAAGTTTTC
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
50 50 0.94
51 3 0.06
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (50 bp):
CAAAGCTAGCCAAGTTGGGTTAAGACTCATGAGGCTAGAGTTCACCGAGC
Found at i:87358530 original size:28 final size:30
Alignment explanation
Indices: 87358454--87358559 Score: 101
Period size: 33 Copynumber: 3.5 Consensus size: 30
87358444 AACAATAGAT
* *
87358454 AGATAGCCACAAAGGCGTCCAAAT-ACATACAC
1 AGATAGCCACAAAGGCATCCACATAACAT---C
* ** *
87358486 AAGATAGCCACAGAGGCATCCATGT-AGAT-
1 -AGATAGCCACAAAGGCATCCACATAACATC
87358515 AGATAGCCACAAAGGCATCCACATAACATC
1 AGATAGCCACAAAGGCATCCACATAACATC
87358545 AGATAGCCACAAAGG
1 AGATAGCCACAAAGG
87358560 TGTCCTCATA
Statistics
Matches: 62, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
28 21 0.34
29 3 0.05
30 15 0.24
33 23 0.37
ACGTcount: A:0.42, C:0.25, G:0.19, T:0.13
Consensus pattern (30 bp):
AGATAGCCACAAAGGCATCCACATAACATC
Found at i:87362744 original size:29 final size:29
Alignment explanation
Indices: 87362679--87362797 Score: 125
Period size: 29 Copynumber: 4.2 Consensus size: 29
87362669 TATATACATG
* * *
87362679 CATATAGCCCACTAGGCCCAA-TCTTATT
1 CATATGGCCCATTAGGCCCAATTCATATT
* * *
87362707 CAAATGGCCCATTTGGCCCAGTTCATATT
1 CATATGGCCCATTAGGCCCAATTCATATT
* * **
87362736 CTTATGGCCCACTAGGCCCAATTCACCTT
1 CATATGGCCCATTAGGCCCAATTCATATT
*
87362765 CATATGGCCCATTAGGCCCAAATCATATT
1 CATATGGCCCATTAGGCCCAATTCATATT
87362794 -ATAT
1 CATAT
87362798 TCATGCTCAC
Statistics
Matches: 72, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
28 20 0.28
29 52 0.72
ACGTcount: A:0.27, C:0.30, G:0.13, T:0.29
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAATTCATATT
Found at i:87362784 original size:58 final size:57
Alignment explanation
Indices: 87362685--87362793 Score: 148
Period size: 58 Copynumber: 1.9 Consensus size: 57
87362675 CATGCATATA
* * **
87362685 GCCCACTAGGCCCAATCTTATTCAAATGGCCCATTTGGCCCAGTTCATATTCTTATG
1 GCCCACTAGGCCCAATCTCATTCAAATGGCCCATTAGGCCCAAATCATATTCTTATG
*
87362742 GCCCACTAGGCCCAAT-TCACCTTCATATGGCCCATTAGGCCCAAATCATATT
1 GCCCACTAGGCCCAATCTCA--TTCAAATGGCCCATTAGGCCCAAATCATATT
87362794 ATATTCATGC
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
56 2 0.04
57 16 0.36
58 27 0.60
ACGTcount: A:0.25, C:0.32, G:0.15, T:0.28
Consensus pattern (57 bp):
GCCCACTAGGCCCAATCTCATTCAAATGGCCCATTAGGCCCAAATCATATTCTTATG
Found at i:87362888 original size:18 final size:19
Alignment explanation
Indices: 87362865--87362902 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
87362855 ATGGGCCCAA
87362865 TAGCCCA-TCAGGCCCATT
1 TAGCCCATTCAGGCCCATT
*
87362883 TAGCCCATTCTGGCCCATT
1 TAGCCCATTCAGGCCCATT
87362902 T
1 T
87362903 GGCCAATCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.18, C:0.37, G:0.16, T:0.29
Consensus pattern (19 bp):
TAGCCCATTCAGGCCCATT
Found at i:87364172 original size:16 final size:16
Alignment explanation
Indices: 87364151--87364183 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
87364141 AAACCCTCAA
87364151 GATTTCGGGATTTTTG
1 GATTTCGGGATTTTTG
87364167 GATTTCGGGATTTTTG
1 GATTTCGGGATTTTTG
87364183 G
1 G
87364184 GGCGTTACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.06, G:0.33, T:0.48
Consensus pattern (16 bp):
GATTTCGGGATTTTTG
Found at i:87365285 original size:9 final size:9
Alignment explanation
Indices: 87365271--87365297 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
87365261 CCACGTTAGG
87365271 AGCCACGCC
1 AGCCACGCC
87365280 AGCCACGCC
1 AGCCACGCC
87365289 AGCCACGCC
1 AGCCACGCC
87365298 CTTAAAGATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.56, G:0.22, T:0.00
Consensus pattern (9 bp):
AGCCACGCC
Found at i:87368675 original size:16 final size:16
Alignment explanation
Indices: 87368654--87368686 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
87368644 AAAAATTCAA
87368654 GATTTCAGGATTTTTG
1 GATTTCAGGATTTTTG
*
87368670 GATTTCGGGATTTTTG
1 GATTTCAGGATTTTTG
87368686 G
1 G
87368687 GGCATTACAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.06, G:0.30, T:0.48
Consensus pattern (16 bp):
GATTTCAGGATTTTTG
Found at i:87374946 original size:47 final size:47
Alignment explanation
Indices: 87374876--87375358 Score: 759
Period size: 47 Copynumber: 10.3 Consensus size: 47
87374866 CCCTTCGGGA
* * * *
87374876 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTGGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
87374923 CTTATCACATATATACACCTTCACATCCATCACATCGGTCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
87374970 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
87375017 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
87375064 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
87375111 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87375158 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
87375205 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
87375252 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
87375299 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87375346 CTTATCACATATA
1 CTTATCACATATA
87375359 CATATCTTGT
Statistics
Matches: 400, Mismatches: 36, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 400 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:87384655 original size:14 final size:14
Alignment explanation
Indices: 87384636--87384666 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
87384626 AAAAAATGGT
*
87384636 CCGATTAAACTGAA
1 CCGATTAAACCGAA
87384650 CCGATTAAACCGAA
1 CCGATTAAACCGAA
87384664 CCG
1 CCG
87384667 GCCAAGAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.39, C:0.29, G:0.16, T:0.16
Consensus pattern (14 bp):
CCGATTAAACCGAA
Found at i:87390501 original size:20 final size:20
Alignment explanation
Indices: 87390449--87390501 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
87390439 TTTGATTATA
* *
87390449 TAGTTTTATTAATGATTAAT
1 TAGTTTAATTACTGATTAAT
* *
87390469 TAGTTTAACTACTTATTAAT
1 TAGTTTAATTACTGATTAAT
87390489 TAGTTTAATTACT
1 TAGTTTAATTACT
87390502 CATGTTTTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.34, C:0.06, G:0.08, T:0.53
Consensus pattern (20 bp):
TAGTTTAATTACTGATTAAT
Found at i:87391982 original size:12 final size:12
Alignment explanation
Indices: 87391965--87391989 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
87391955 GTGATTTTAC
87391965 TTAGTTTCTAGT
1 TTAGTTTCTAGT
87391977 TTAGTTTCTAGT
1 TTAGTTTCTAGT
87391989 T
1 T
87391990 CAAAGACTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TTAGTTTCTAGT
Found at i:87394784 original size:13 final size:14
Alignment explanation
Indices: 87394766--87394795 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
87394756 CATGAACAAA
87394766 ACAAAAAATAAC-C
1 ACAAAAAATAACAC
87394779 ACAAAAAATAACAC
1 ACAAAAAATAACAC
87394793 ACA
1 ACA
87394796 CCAAGTGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.70, C:0.23, G:0.00, T:0.07
Consensus pattern (14 bp):
ACAAAAAATAACAC
Found at i:87395638 original size:15 final size:14
Alignment explanation
Indices: 87395601--87395639 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
87395591 AAAGAAATAT
*
87395601 ATATTTTTTAAAAA
1 ATATTTTTAAAAAA
87395615 ATATCTTTTAAAAAA
1 ATAT-TTTTAAAAAA
87395630 ATTATTTTTA
1 A-TATTTTTA
87395640 TTTTTAAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 4 0.18
15 15 0.68
16 3 0.14
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (14 bp):
ATATTTTTAAAAAA
Found at i:87395645 original size:21 final size:21
Alignment explanation
Indices: 87395620--87395660 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
87395610 AAAAAATATC
*
87395620 TTTTAAAAAAAT-TATTTTTA
1 TTTTTAAAAAATATATTTTTA
*
87395640 TTTTTAAGAAATATATTTTTA
1 TTTTTAAAAAATATATTTTTA
87395661 CTAAATTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.56
Consensus pattern (21 bp):
TTTTTAAAAAATATATTTTTA
Found at i:87401978 original size:12 final size:12
Alignment explanation
Indices: 87401955--87401989 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
87401945 AGCTCATGTG
*
87401955 GCTAGCCCGTGT
1 GCTAGGCCGTGT
*
87401967 GTTAGGCCGTGT
1 GCTAGGCCGTGT
87401979 GCTAGGCCGTG
1 GCTAGGCCGTG
87401990 CCAAACCTGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.09, C:0.26, G:0.40, T:0.26
Consensus pattern (12 bp):
GCTAGGCCGTGT
Found at i:87403141 original size:39 final size:40
Alignment explanation
Indices: 87403040--87403144 Score: 158
Period size: 40 Copynumber: 2.6 Consensus size: 40
87403030 CGAATTCTTT
* *
87403040 CACACTAAGTGTCATACATAGCTGAAGCTATCTCGAATCG
1 CACACTAAGTGCCATACATAGCCGAAGCTATCTCGAATCG
* *
87403080 CACACTAAGTGCCACACATAGCCGAAGCTATCTTGAATCG
1 CACACTAAGTGCCATACATAGCCGAAGCTATCTCGAATCG
*
87403120 CACACT-AGTGCCGTACATAGCCGAA
1 CACACTAAGTGCCATACATAGCCGAA
87403145 TGTTGTCAAT
Statistics
Matches: 59, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
39 17 0.29
40 42 0.71
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.21
Consensus pattern (40 bp):
CACACTAAGTGCCATACATAGCCGAAGCTATCTCGAATCG
Found at i:87404647 original size:34 final size:34
Alignment explanation
Indices: 87404604--87404676 Score: 103
Period size: 34 Copynumber: 2.1 Consensus size: 34
87404594 AGTGGCAGTC
*
87404604 CAGTATCAGT-TAGGGCCATAGCCCATTACAGCAA
1 CAGTATCAGTGT-GGGCCATAACCCATTACAGCAA
* *
87404638 CAGTATCAGTGTGGGCCTTAACCCATTACAGTAA
1 CAGTATCAGTGTGGGCCATAACCCATTACAGCAA
87404672 CAGTA
1 CAGTA
87404677 ACAGAAATGC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
34 34 0.97
35 1 0.03
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.23
Consensus pattern (34 bp):
CAGTATCAGTGTGGGCCATAACCCATTACAGCAA
Found at i:87408612 original size:27 final size:26
Alignment explanation
Indices: 87408568--87408618 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
87408558 CTCACTACAA
*
87408568 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
87408595 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
87408619 AGTAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.18, C:0.27, G:0.20, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:87416505 original size:18 final size:17
Alignment explanation
Indices: 87416466--87416505 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
87416456 AGGCCAGATT
*
87416466 TGGGCTTGTGGGCCACA
1 TGGGCGTGTGGGCCACA
*
87416483 CGGGCGTGTGGGCCCACA
1 TGGGCGTGTGGG-CCACA
87416501 TGGGC
1 TGGGC
87416506 CTGTATTATG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.10, C:0.28, G:0.45, T:0.17
Consensus pattern (17 bp):
TGGGCGTGTGGGCCACA
Found at i:87418183 original size:28 final size:27
Alignment explanation
Indices: 87418120--87418271 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
87418110 ATATTAAGTC
* *
87418120 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
87418147 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
87418175 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
87418202 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
87418230 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
87418257 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
87418272 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:87418204 original size:55 final size:55
Alignment explanation
Indices: 87418120--87418299 Score: 261
Period size: 55 Copynumber: 3.3 Consensus size: 55
87418110 ATATTAAGTC
* * *
87418120 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
87418175 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * *
87418230 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAA-TCAAACT
*
87418286 CGCACATTTAGTGC
1 CGCACACTTAGTGC
87418300 CGAGATCAAC
Statistics
Matches: 113, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
55 95 0.84
56 18 0.16
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:87426874 original size:49 final size:50
Alignment explanation
Indices: 87426809--87426943 Score: 166
Period size: 51 Copynumber: 2.7 Consensus size: 50
87426799 ATTTGGTATG
*
87426809 CATAGTAGCCTGCACTTAGTACTATACATGCGACCAACAG-TCT-GGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACC-ACAGTTCTGGGTACA
** * * * * *
87426858 TGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTTGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCACAG-TTCTGGGTACA
87426909 CATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACC
87426944 TCACAATAGA
Statistics
Matches: 70, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
48 4 0.06
49 29 0.41
50 2 0.03
51 35 0.50
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACATGCGACCACAGTTCTGGGTACA
Found at i:87428736 original size:50 final size:50
Alignment explanation
Indices: 87428622--87428910 Score: 285
Period size: 50 Copynumber: 5.7 Consensus size: 50
87428612 GTGAGAACAC
* * * *
87428622 GTGTAGTACTATGTGCAGGCTACTATGTATTTAAGACAG-TT-TTAGGTCACGT
1 GTGTAGTACTAAGTGCAGGCTACTATG--TGT-A-CCAGATTGTTAGGTCACAT
* *
87428674 GTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATTGTTAGGTCGCAT
1 GTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCACAT
* * * * * * *
87428724 GTGTCGTACTAAGTGCAGGCTACTATGCGTACCCGATAGCTTCGATCACGT
1 GTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG-TTAGGTCACAT
* * * *
87428775 GTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCACAT
1 GTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCACAT
* * * * **
87428825 GTGTAGTACTAAGTGCAGGCTTCTACGTGTACCAGATTATTTGGTCGTAT
1 GTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCACAT
* * *
87428875 GTGTAGTACTAAGTGCAGGATACTATCTGTATCAGA
1 GTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
87428911 GAGCTTCGGT
Statistics
Matches: 197, Mismatches: 37, Indels: 8
0.81 0.15 0.03
Matches are distributed among these distances:
48 2 0.01
49 3 0.02
50 127 0.64
51 39 0.20
52 26 0.13
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.33
Consensus pattern (50 bp):
GTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCACAT
Found at i:87428857 original size:101 final size:101
Alignment explanation
Indices: 87428668--87428857 Score: 290
Period size: 101 Copynumber: 1.9 Consensus size: 101
87428658 CAGTTTTAGG
* * * * *
87428668 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATTGTTAGGTCGCATGTGTCGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAGTAC
*
87428733 TAAGTGCAGGCTACTATGCGTACCCGATAGCTTCGA
66 TAAGTGCAGGCTACTACGCGTACCCGATAGCTTCGA
* *
87428769 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAGTAC
* *
87428834 TAAGTGCAGGCTTCTACGTGTACC
66 TAAGTGCAGGCTACTACGCGTACC
87428858 AGATTATTTG
Statistics
Matches: 79, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
101 79 1.00
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAGTAC
TAAGTGCAGGCTACTACGCGTACCCGATAGCTTCGA
Found at i:87432968 original size:56 final size:56
Alignment explanation
Indices: 87432837--87432972 Score: 211
Period size: 56 Copynumber: 2.4 Consensus size: 56
87432827 TCCCAGACAA
* *
87432837 GGTCTTACTCGCACACATAAATCAGAATCACATATCGATGCCAACATATTAAACGT
1 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACATATTAAACGT
* **
87432893 GGTCTTACTCGGACACATATATCGGAATCACATATCGATGCCAATGTATTAAACGT
1 GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACATATTAAACGT
87432949 GGTCTTAC-CTGCACACATATATCG
1 GGTCTTACTC-GCACACATATATCG
87432973 ATGCCATGGT
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
55 1 0.01
56 72 0.99
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.27
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACATATTAAACGT
Found at i:87441473 original size:44 final size:44
Alignment explanation
Indices: 87441423--87441581 Score: 173
Period size: 43 Copynumber: 3.7 Consensus size: 44
87441413 TATGTGTTAT
*
87441423 CGTGTAAGACCATGCCTGGGACATTGGCATCGAT-TTGTGATTTA
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGATATT-TGATTTA
*
87441467 CGTGTAAGAGCATGTCTGGGACATTGGCATCG-TATTTGATTT-
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGATATTTGATTTA
* ** * * * *
87441509 TGTGTAAGACCCGGTATAGGATAGTGGCATCGATATTTGA-TTA
1 CGTGTAAGACCATGTCTGGGACATTGGCATCGATATTTGATTTA
* * *
87441552 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGTGTAAGACCATGTCTGGGACATTGGCAT
87441582 TGTATGAGCT
Statistics
Matches: 93, Mismatches: 19, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
42 26 0.28
43 35 0.38
44 32 0.34
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.31
Consensus pattern (44 bp):
CGTGTAAGACCATGTCTGGGACATTGGCATCGATATTTGATTTA
Found at i:87445619 original size:30 final size:30
Alignment explanation
Indices: 87445585--87445645 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
87445575 TCCTTAACTC
87445585 AAACTTTTACAAAATTACAATTTTGCCCCT
1 AAACTTTTACAAAATTACAATTTTGCCCCT
* * * * *
87445615 AAACTTTTTCATATTTATATTTTTGCCCCT
1 AAACTTTTACAAAATTACAATTTTGCCCCT
87445645 A
1 A
87445646 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.21, G:0.03, T:0.44
Consensus pattern (30 bp):
AAACTTTTACAAAATTACAATTTTGCCCCT
Found at i:87451494 original size:44 final size:44
Alignment explanation
Indices: 87451444--87451558 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
87451434 TATGTGTTAT
* *
87451444 CATGTAAGACCACGTCTGGGACATTGGCATTGATTTGTGAATTA
1 CATGTAAGACCACGTCTGGGACATTGGCATCGATTTGGGAATTA
* * * * *
87451488 CGTGTAAGATCACATCTAGGACATTGGCATCGATTTGGGATTTA
1 CATGTAAGACCACGTCTGGGACATTGGCATCGATTTGGGAATTA
* *
87451532 CATGTGAGACCATGTCTGGGACATTGG
1 CATGTAAGACCACGTCTGGGACATTGG
87451559 TGATAAACCG
Statistics
Matches: 58, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
44 58 1.00
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (44 bp):
CATGTAAGACCACGTCTGGGACATTGGCATCGATTTGGGAATTA
Found at i:87453000 original size:43 final size:42
Alignment explanation
Indices: 87452933--87453027 Score: 127
Period size: 43 Copynumber: 2.2 Consensus size: 42
87452923 ACGTATCAAT
* * * * *
87452933 TGGCATCGTATTTGATTTCGTGTAAGACCATGTCTGGGACAG
1 TGGCATTGTATTTGATTACCTGTAAGACCACGTCTGAGACAG
*
87452975 TGGCATTGATATTTGATTACCTGTAAGACCACGTCTGAGACAT
1 TGGCATTG-TATTTGATTACCTGTAAGACCACGTCTGAGACAG
87453018 TGGCATTGTA
1 TGGCATTGTA
87453028 CGAGCTTATG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
42 9 0.20
43 37 0.80
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (42 bp):
TGGCATTGTATTTGATTACCTGTAAGACCACGTCTGAGACAG
Found at i:87460640 original size:56 final size:56
Alignment explanation
Indices: 87460490--87460649 Score: 173
Period size: 56 Copynumber: 2.9 Consensus size: 56
87460480 TTTGATAACA
* * *
87460490 TGATACATGCTAGGTCCGGGAGCTTGTGTAGCCCCGTTGAGAGGCAT-GTAATTATG
1 TGATACATGCTAGGTCCGGGAGCTTATGTAGCCCTGTTGAGAGGCGTGGTAA-TATG
* * * * * *
87460546 TGGTACACGCTAGGTCCAGGAGCTTATATAGACTTGTTGAGAGGCGTGGT-A-ATG
1 TGATACATGCTAGGTCCGGGAGCTTATGTAGCCCTGTTGAGAGGCGTGGTAATATG
* *
87460600 TGATGCATGCTAGGTCCGGGTGCTCATATGTAGCCCTGTTGAGAGGCGTG
1 TGATACATGCTAGGTCCGGGAGCT--TATGTAGCCCTGTTGAGAGGCGTG
87460650 CTATGTCATG
Statistics
Matches: 84, Mismatches: 17, Indels: 6
0.79 0.16 0.06
Matches are distributed among these distances:
54 22 0.26
56 60 0.71
57 2 0.02
ACGTcount: A:0.21, C:0.17, G:0.34, T:0.28
Consensus pattern (56 bp):
TGATACATGCTAGGTCCGGGAGCTTATGTAGCCCTGTTGAGAGGCGTGGTAATATG
Found at i:87469488 original size:56 final size:54
Alignment explanation
Indices: 87469392--87469547 Score: 161
Period size: 56 Copynumber: 2.8 Consensus size: 54
87469382 TTTGATGACA
* * * * *
87469392 TGATACATGCTAGGTTCGGGAGCTTGTGTTGCCCCGTTGAGAGGCAT-GTAATTATG
1 TGATACAAGCTAGGTCCGGGAGCTTATGTAGCCCTGTTGAGAGGCATGGT-A--ATG
* * *
87469448 TGGTACACGTTAGGTCCGGGAGCTTATGTAGCCCTGTTGAGAGGCATGGTAATG
1 TGATACAAGCTAGGTCCGGGAGCTTATGTAGCCCTGTTGAGAGGCATGGTAATG
* * *
87469502 TGATGCAAGCTAGGTCTGGGTGCTCATATGTAGCCCTGTTGAGAGG
1 TGATACAAGCTAGGTCCGGGAGCT--TATGTAGCCCTGTTGAGAGG
87469548 TGTGCTATGT
Statistics
Matches: 84, Mismatches: 13, Indels: 6
0.82 0.13 0.06
Matches are distributed among these distances:
54 21 0.25
56 61 0.73
57 2 0.02
ACGTcount: A:0.20, C:0.17, G:0.34, T:0.29
Consensus pattern (54 bp):
TGATACAAGCTAGGTCCGGGAGCTTATGTAGCCCTGTTGAGAGGCATGGTAATG
Found at i:87476854 original size:46 final size:45
Alignment explanation
Indices: 87476804--87476975 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 45
87476794 TGGGCATCCA
*
87476804 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCCG
* *** * *
87476850 AACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-TCC-
1 AACTCATTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAGTCCG
*
87476896 AAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AA-CTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCCG
*
87476943 AGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 AACTCATTGAGTTGAGTCCGAGTTCACTTATGG
87476976 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 64 0.62
47 30 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (45 bp):
AACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGTCCG
Found at i:87476955 original size:93 final size:93
Alignment explanation
Indices: 87476796--87476967 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
87476786 AGGATGTTTG
* * * *
87476796 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCAAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
87476861 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
87476889 GGCATCCAAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAG
1 GGCATCCAAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
87476954 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
87476968 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (93 bp):
GGCATCCAAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:87487314 original size:24 final size:24
Alignment explanation
Indices: 87487284--87487329 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
87487274 ATGTATCGGC
* *
87487284 AAAAGCTGAAATGCCAAAAAGCCA
1 AAAAGCTAAAATACCAAAAAGCCA
*
87487308 AAAAGCTAAAATACCGAAAAGC
1 AAAAGCTAAAATACCAAAAAGC
87487330 TGAAAGTTTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.57, C:0.20, G:0.15, T:0.09
Consensus pattern (24 bp):
AAAAGCTAAAATACCAAAAAGCCA
Found at i:87487626 original size:28 final size:28
Alignment explanation
Indices: 87487545--87487630 Score: 109
Period size: 28 Copynumber: 3.0 Consensus size: 28
87487535 GTGAGCATGA
* * **
87487545 ATATGAATGTGACTGTGCCTAACAGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
*
87487573 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGA-TTGGGCCTAATGGGCC
*
87487602 ATATGAATGTGATTGGGCTTAATGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
87487630 A
1 A
87487631 GATATAGGTA
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
28 27 0.54
29 23 0.46
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAATGGGCC
Found at i:87491690 original size:46 final size:45
Alignment explanation
Indices: 87491640--87491812 Score: 165
Period size: 46 Copynumber: 3.8 Consensus size: 45
87491630 TGGTTGAGCA
87491640 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA-G
* * * * *
87491686 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AAAGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A-G
* *
87491731 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGTATGGATGCGAAC
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATGGATGCAAAG
* *
87491778 ACCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
87491813 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 14, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
43 4 0.04
45 6 0.06
46 57 0.55
47 31 0.30
48 2 0.02
50 3 0.03
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAG
Found at i:87491796 original size:93 final size:93
Alignment explanation
Indices: 87491637--87491807 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
87491627 GGATGGTTGA
**
87491637 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATCACCGAACTCGTTGAGT
87491702 TGAGTCCGAGTTCGTGAAAAGTAACTAG
66 TGAGTCCGAGTTCGTGAAAAGTAACTAG
* *
87491730 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGTATGGATGCGAA-CACCTGAGCTCGTTGA
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATGGATGCAAATCACC-GAACTCGTTGA
87491793 GTTGAGTCCGAGTTC
64 GTTGAGTCCGAGTTC
87491808 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
92 3 0.04
93 69 0.96
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATCACCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAAAGTAACTAG
Found at i:87492073 original size:19 final size:20
Alignment explanation
Indices: 87492036--87492073 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
87492026 ATAAGGTGGT
87492036 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
87492056 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
87492074 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:87499337 original size:92 final size:93
Alignment explanation
Indices: 87499171--87499340 Score: 306
Period size: 92 Copynumber: 1.8 Consensus size: 93
87499161 GGATGGTTGA
* *
87499171 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
87499236 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
87499264 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
87499328 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
87499341 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 41 0.55
93 33 0.45
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:87503826 original size:20 final size:20
Alignment explanation
Indices: 87503801--87503854 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
87503791 TTTCATGGGC
**
87503801 TTGGGCCGTTATGGGCCACG
1 TTGGGCCGAAATGGGCCACG
*
87503821 TTGGGCCGAAATGGGCCATG
1 TTGGGCCGAAATGGGCCACG
87503841 -TGGGCCG-AATGGGC
1 TTGGGCCGAAATGGGC
87503855 TCATGGGTCC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
18 7 0.23
19 7 0.23
20 17 0.55
ACGTcount: A:0.15, C:0.22, G:0.43, T:0.20
Consensus pattern (20 bp):
TTGGGCCGAAATGGGCCACG
Found at i:87504129 original size:27 final size:27
Alignment explanation
Indices: 87504094--87504217 Score: 187
Period size: 27 Copynumber: 4.6 Consensus size: 27
87504084 CCCAAAAATA
*
87504094 GGTAAAATGACTGTAATGCCCTTGTAG
1 GGTAAAATGACCGTAATGCCCTTGTAG
*
87504121 GGTAAAATGACCGTAATACCCTTGTAG
1 GGTAAAATGACCGTAATGCCCTTGTAG
*
87504148 GGTAAAATGAACGTAATGCCC-TGTAG
1 GGTAAAATGACCGTAATGCCCTTGTAG
* *
87504174 GGTAAAATGACCGTAGTGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCTTGTAG
*
87504201 GGTAAAATGACCATAAT
1 GGTAAAATGACCGTAAT
87504218 ATCCCTATAC
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
26 24 0.27
27 64 0.73
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (27 bp):
GGTAAAATGACCGTAATGCCCTTGTAG
Found at i:87504188 original size:53 final size:53
Alignment explanation
Indices: 87504094--87504238 Score: 184
Period size: 53 Copynumber: 2.7 Consensus size: 53
87504084 CCCAAAAATA
*
87504094 GGTAAAATG-ACTGTAATGCCCTTGTAGGGTAAAATGACCGTAATACCCTTGTAG
1 GGTAAAATGAAC-GTAATGCCC-TGTAGGGTAAAATGACCGTAATACCCCTGTAG
* *
87504148 GGTAAAATGAACGTAATGCCCTGTAGGGTAAAATGACCGTAGTGCCCCTGTAG
1 GGTAAAATGAACGTAATGCCCTGTAGGGTAAAATGACCGTAATACCCCTGTAG
* * * * *
87504201 GGTAAAATGACCATAATATCCCTATACGGTAAAATGAC
1 GGTAAAATGAACGTAAT-GCCCTGTAGGGTAAAATGAC
87504239 GATTATGACC
Statistics
Matches: 81, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
53 44 0.54
54 35 0.43
55 2 0.02
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (53 bp):
GGTAAAATGAACGTAATGCCCTGTAGGGTAAAATGACCGTAATACCCCTGTAG
Found at i:87504223 original size:27 final size:26
Alignment explanation
Indices: 87504094--87504238 Score: 182
Period size: 27 Copynumber: 5.4 Consensus size: 26
87504084 CCCAAAAATA
*
87504094 GGTAAAATGACTGTAATGCCCTTGTAG
1 GGTAAAATGACCGTAATGCCC-TGTAG
*
87504121 GGTAAAATGACCGTAATACCCTTGTAG
1 GGTAAAATGACCGTAATGCCC-TGTAG
*
87504148 GGTAAAATGAACGTAATGCCCTGTAG
1 GGTAAAATGACCGTAATGCCCTGTAG
*
87504174 GGTAAAATGACCGTAGTGCCCCTGTAG
1 GGTAAAATGACCGTAATG-CCCTGTAG
* * * *
87504201 GGTAAAATGACCATAATATCCCTATAC
1 GGTAAAATGACCGTAAT-GCCCTGTAG
87504228 GGTAAAATGAC
1 GGTAAAATGAC
87504239 GATTATGACC
Statistics
Matches: 105, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
26 21 0.20
27 84 0.80
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (26 bp):
GGTAAAATGACCGTAATGCCCTGTAG
Found at i:87508303 original size:23 final size:23
Alignment explanation
Indices: 87508284--87508336 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
87508274 TTCAAAAAAT
*
87508284 AAATAAAACA-AAACTAAAAACAA
1 AAATAAAA-ATAAAATAAAAACAA
*
87508307 AAATAAAAATAAAATAAAAATAA
1 AAATAAAAATAAAATAAAAACAA
87508330 AAATAAA
1 AAATAAA
87508337 TGGACTCAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
22 1 0.04
23 26 0.96
ACGTcount: A:0.81, C:0.06, G:0.00, T:0.13
Consensus pattern (23 bp):
AAATAAAAATAAAATAAAAACAA
Found at i:87508320 original size:17 final size:17
Alignment explanation
Indices: 87508300--87508336 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
87508290 AACAAAACTA
87508300 AAAACAAAAATAAAAAT
1 AAAACAAAAATAAAAAT
*
87508317 AAAATAAAAATAAAAAT
1 AAAACAAAAATAAAAAT
87508334 AAA
1 AAA
87508337 TGGACTCAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.84, C:0.03, G:0.00, T:0.14
Consensus pattern (17 bp):
AAAACAAAAATAAAAAT
Found at i:87508326 original size:6 final size:6
Alignment explanation
Indices: 87508278--87508336 Score: 66
Period size: 6 Copynumber: 9.5 Consensus size: 6
87508268 AAAGTCTTCA
* *
87508278 AAAAAT AAATAAA ACAAAACT AAAAAC AAAAAT AAAAAT -AAAAT AAAAAT
1 AAAAAT AAA-AAT A-AAAA-T AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
87508328 AAAAAT AAA
1 AAAAAT AAA
87508337 TGGACTCAGA
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
5 5 0.11
6 28 0.62
7 9 0.20
8 3 0.07
ACGTcount: A:0.81, C:0.05, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:87511197 original size:15 final size:15
Alignment explanation
Indices: 87511173--87511202 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
87511163 CTAATGTATT
87511173 TTTTGAGGTTTCGGC
1 TTTTGAGGTTTCGGC
*
87511188 TTTTGTGGTTTCGGC
1 TTTTGAGGTTTCGGC
87511203 ACAAGTTTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.03, C:0.13, G:0.33, T:0.50
Consensus pattern (15 bp):
TTTTGAGGTTTCGGC
Found at i:87519645 original size:26 final size:27
Alignment explanation
Indices: 87519564--87519648 Score: 84
Period size: 30 Copynumber: 3.0 Consensus size: 27
87519554 TCAAACACAT
*
87519564 AATAATAAATAAATAAAGAATTAATAAA
1 AATAA-AAATAAATAAAGAATAAATAAA
*
87519592 AGATAAATAA-AAATAAAGAGAATGAAATAGA
1 A-ATAAA-AATAAAT-AA-AGAAT-AAATAAA
87519623 AATAAAAATAAATAAAGAA-AAATAAA
1 AATAAAAATAAATAAAGAATAAATAAA
87519649 GAAAAGCAAG
Statistics
Matches: 48, Mismatches: 3, Indels: 14
0.74 0.05 0.22
Matches are distributed among these distances:
26 6 0.12
28 10 0.21
29 12 0.25
30 14 0.29
31 6 0.12
ACGTcount: A:0.73, C:0.00, G:0.08, T:0.19
Consensus pattern (27 bp):
AATAAAAATAAATAAAGAATAAATAAA
Found at i:87529970 original size:21 final size:21
Alignment explanation
Indices: 87529927--87529979 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
87529917 TGGGCAACAG
**
87529927 CATGGGCGTGTCCTATGGTCA
1 CATGGGCGTGTCCTATGACCA
87529948 CATGGGCGTGTCTCT-TGACCA
1 CATGGGCGTGTC-CTATGACCA
*
87529969 CACGGGCGTGT
1 CATGGGCGTGT
87529980 GTGCCCTGCA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 26 0.93
22 2 0.07
ACGTcount: A:0.13, C:0.26, G:0.34, T:0.26
Consensus pattern (21 bp):
CATGGGCGTGTCCTATGACCA
Found at i:87532215 original size:14 final size:15
Alignment explanation
Indices: 87532185--87532217 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
87532175 TGCCCCAAAT
87532185 TTGGGCCTAGAAGTA
1 TTGGGCCTAGAAGTA
*
87532200 TTGGGCCTTG-AGTA
1 TTGGGCCTAGAAGTA
87532214 TTGG
1 TTGG
87532218 TCTGTAAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.18, C:0.12, G:0.36, T:0.33
Consensus pattern (15 bp):
TTGGGCCTAGAAGTA
Found at i:87533999 original size:28 final size:28
Alignment explanation
Indices: 87533946--87534011 Score: 71
Period size: 28 Copynumber: 2.4 Consensus size: 28
87533936 GCATCTGATA
* * * *
87533946 CTGATTCT-ATATTGGGTTTAATCCCAC
1 CTGATTCTGTTATTGGGCTAAAGCCCAC
87533973 CTGATTCTGTTATTGGGCTAAAGCCCAC
1 CTGATTCTGTTATTGGGCTAAAGCCCAC
* *
87534001 ATGATACTGTT
1 CTGATTCTGTT
87534012 TCTGCGATGG
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
27 8 0.25
28 24 0.75
ACGTcount: A:0.23, C:0.21, G:0.18, T:0.38
Consensus pattern (28 bp):
CTGATTCTGTTATTGGGCTAAAGCCCAC
Found at i:87535606 original size:28 final size:28
Alignment explanation
Indices: 87535557--87535619 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 28
87535547 TCTAATACTA
*
87535557 ATTCTG-TATTGGACTTAAGCCCACCTG
1 ATTCTGTTATTGGACTTAAGCCCACATG
*
87535584 ATTCTGTTATTGGGC-TAAGGCCCACATG
1 ATTCTGTTATTGGACTTAA-GCCCACATG
*
87535612 ATACTGTT
1 ATTCTGTT
87535620 TCTGCGATGG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 9 0.29
28 22 0.71
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.35
Consensus pattern (28 bp):
ATTCTGTTATTGGACTTAAGCCCACATG
Found at i:87536665 original size:28 final size:28
Alignment explanation
Indices: 87536625--87536687 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
87536615 TCTGATACTT
*
87536625 ATTCTG-TATTGGGCTTAA-GCCCACCTG
1 ATTCTGTTATTGGGC-TAAGGCCCACATG
87536652 ATTCTGTTATTGGGCTAAGGCCCACATG
1 ATTCTGTTATTGGGCTAAGGCCCACATG
*
87536680 ATACTGTT
1 ATTCTGTT
87536688 TTTGTGATGG
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
27 9 0.28
28 23 0.72
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.35
Consensus pattern (28 bp):
ATTCTGTTATTGGGCTAAGGCCCACATG
Found at i:87541310 original size:23 final size:21
Alignment explanation
Indices: 87541284--87541336 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
87541274 TAGCTCATTG
*
87541284 GAGCTTACCGATTCAATTCAAAA
1 GAGCTTACCG-TTCAACTC-AAA
* *
87541307 GAGCTTACTGTTCAACTCATA
1 GAGCTTACCGTTCAACTCAAA
87541328 GAGCTTACC
1 GAGCTTACC
87541337 ATTTTCAGAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 10 0.38
22 7 0.27
23 9 0.35
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (21 bp):
GAGCTTACCGTTCAACTCAAA
Found at i:87556525 original size:44 final size:43
Alignment explanation
Indices: 87556449--87556612 Score: 152
Period size: 43 Copynumber: 3.8 Consensus size: 43
87556439 ACATAGGATC
* * * *
87556449 CGATATGTATTTTCGTGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATCTGTTTTCGTGTAAGACCATGTCTGGGACATTGGCAT
* *
87556492 CGACT-TCTGTTTTACGTGTAAGACCATGTCTGGGACATCGACAT
1 CGA-TATCTGTTTT-CGTGTAAGACCATGTCTGGGACATTGGCAT
* * * *
87556536 CG-TATCTGATTTCGTGTAAGACCTTGTCTGGGATAATGGCAT
1 CGATATCTGTTTTCGTGTAAGACCATGTCTGGGACATTGGCAT
* * * * * *
87556578 TGATGTTTGATTACATGTAAGACCATGTCTGGGAC
1 CGATATCTGTTTTCGTGTAAGACCATGTCTGGGAC
87556613 GCTTGCATTG
Statistics
Matches: 98, Mismatches: 19, Indels: 8
0.78 0.15 0.06
Matches are distributed among these distances:
42 27 0.28
43 42 0.43
44 29 0.30
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.34
Consensus pattern (43 bp):
CGATATCTGTTTTCGTGTAAGACCATGTCTGGGACATTGGCAT
Found at i:87558050 original size:27 final size:27
Alignment explanation
Indices: 87557953--87558051 Score: 76
Period size: 27 Copynumber: 3.7 Consensus size: 27
87557943 TTAGTTTACC
* *
87557953 AAATTACTGAAATACCCTCAACTTGTA
1 AAATTACTGAAATACCCTCAATTTATA
* * * *
87557980 AAATTACTGAAGTACTAC-CGATTTACA
1 AAATTACTGAAATAC-CCTCAATTTATA
* * **
87558007 GAATTACCG-TTTCACCCTCAATTTATA
1 AAATTACTGAAAT-ACCCTCAATTTATA
87558034 AAATTACTGAAATACCCT
1 AAATTACTGAAATACCCT
87558052 TGTAGGTAGA
Statistics
Matches: 51, Mismatches: 17, Indels: 8
0.67 0.22 0.11
Matches are distributed among these distances:
26 2 0.04
27 47 0.92
28 2 0.04
ACGTcount: A:0.38, C:0.22, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCAATTTATA
Found at i:87558067 original size:26 final size:26
Alignment explanation
Indices: 87558035--87558148 Score: 129
Period size: 27 Copynumber: 4.3 Consensus size: 26
87558025 CAATTTATAA
* *
87558035 AATTACTGAAATACCCTTGTAGGTAG
1 AATTACCGAAATACCCTTATAGGTAG
* *
87558061 AGTTACTGAAATACCCTTATAAGGTAG
1 AATTACCGAAATACCCTTAT-AGGTAG
* *
87558088 AAATACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTATA-GGTAG
* *
87558115 AATTACCGAGATACCCTTATAGGATAA
1 AATTACCGAAATACCCTTATAGG-TAG
87558142 AATTACC
1 AATTACC
87558149 ATTTTGCCCC
Statistics
Matches: 75, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 21 0.28
27 54 0.72
ACGTcount: A:0.39, C:0.18, G:0.17, T:0.26
Consensus pattern (26 bp):
AATTACCGAAATACCCTTATAGGTAG
Found at i:87558588 original size:22 final size:22
Alignment explanation
Indices: 87558536--87558600 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
87558526 GCCAATTATT
* *
87558536 CTGATTATGGTTTTGCGCCAAC
1 CTGATTATGGTTCTGTGCCAAC
* *
87558558 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGTTCTGTGCCAAC
*
87558580 CTGATTATGGTTGTGTGCCAA
1 CTGATTATGGTTCTGTGCCAA
87558601 ACGTATTTGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGTTCTGTGCCAAC
Found at i:87558789 original size:27 final size:26
Alignment explanation
Indices: 87558759--87558866 Score: 117
Period size: 27 Copynumber: 4.0 Consensus size: 26
87558749 ATTCTGTTAA
* *
87558759 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTG-TTCTG
87558786 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTATGCCAC-AATATCTGTTCTG
* *
87558813 GTGGCTCTGCCACAATATCTATATCTG
1 GTGGCTATGCCACAATATCTGT-TCTG
* * * *
87558840 ATGACTCTGTCACAATATCTGTTCTG
1 GTGGCTATGCCACAATATCTGTTCTG
87558866 G
1 G
87558867 CAGCCATGCT
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 12 0.17
27 51 0.73
28 7 0.10
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.37
Consensus pattern (26 bp):
GTGGCTATGCCACAATATCTGTTCTG
Found at i:87558817 original size:54 final size:53
Alignment explanation
Indices: 87558759--87558866 Score: 135
Period size: 54 Copynumber: 2.0 Consensus size: 53
87558749 ATTCTGTTAA
* * * * * *
87558759 GTGGCTTTGCCACATTATCTGTTTCTGGTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTATATCTGATGACTATGCCAC-AATATCTGTTCTG
* *
87558813 GTGGCTCTGCCACAATATCTATATCTGATGACTCTGTCACAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTATATCTGATGACTATGCCACAATATCTGTTCTG
87558866 G
1 G
87558867 CAGCCATGCT
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
53 14 0.30
54 32 0.70
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.37
Consensus pattern (53 bp):
GTGGCTCTGCCACAATATCTATATCTGATGACTATGCCACAATATCTGTTCTG
Found at i:87558992 original size:6 final size:6
Alignment explanation
Indices: 87558983--87559095 Score: 54
Period size: 6 Copynumber: 18.3 Consensus size: 6
87558973 TTGCATTCAC
* * * * *
87558983 ATTCTG ATTCTG ATTCT- ATTACCTG ATACCG ATTCTA ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* * * *
87559033 ATTTTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG ATTCTC ATTTTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
87559082 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
87559096 AATGTTTCTT
Statistics
Matches: 78, Mismatches: 18, Indels: 22
0.66 0.15 0.19
Matches are distributed among these distances:
5 6 0.08
6 60 0.77
7 8 0.10
8 4 0.05
ACGTcount: A:0.20, C:0.20, G:0.12, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:87559016 original size:25 final size:25
Alignment explanation
Indices: 87558983--87559074 Score: 121
Period size: 25 Copynumber: 3.7 Consensus size: 25
87558973 TTGCATTCAC
* *
87558983 ATTCTGATTCTGATTCTATTACCTG
1 ATTCTGATTCTGATTCTGTCACCTG
* * * *
87559008 ATACCGATTCTAATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTG
*
87559033 ATTTTGATTCTGATTCTGTCACCTG
1 ATTCTGATTCTGATTCTGTCACCTG
87559058 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
87559075 CATTTTGATT
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 55 1.00
ACGTcount: A:0.21, C:0.22, G:0.12, T:0.46
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTG
Found at i:87566291 original size:40 final size:40
Alignment explanation
Indices: 87566236--87566459 Score: 297
Period size: 40 Copynumber: 5.5 Consensus size: 40
87566226 TAATCGGATG
87566236 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
87566276 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
87566319 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
87566359 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
87566399 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
87566439 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
87566460 ATACTTGGGT
Statistics
Matches: 164, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
39 13 0.08
40 113 0.69
41 1 0.01
43 37 0.23
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:87566379 original size:83 final size:80
Alignment explanation
Indices: 87566240--87566459 Score: 293
Period size: 83 Copynumber: 2.7 Consensus size: 80
87566230 CGGATGATAT
* **
87566240 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
87566305 TGCAAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
*
87566323 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
87566388 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * * *
87566403 CCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
87566460 ATACTTGGGT
Statistics
Matches: 126, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
79 16 0.13
80 44 0.35
81 2 0.02
83 64 0.51
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:87570768 original size:39 final size:40
Alignment explanation
Indices: 87570558--87570788 Score: 331
Period size: 40 Copynumber: 5.8 Consensus size: 40
87570548 GGATATAACT
* * *
87570558 ACTCGCTCAAATGCCTTCGGGACATAGCCC-GATTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
*
87570598 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
87570638 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
87570678 ATTCGCACAAATGCCTTCGGGACTTAGCCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
87570718 ACTCGCACAGATGCCTTCGGGACTTAGCCCGGA-TTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* ** *
87570757 ACTAGTGCAGATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
87570789 TTTTCAACCA
Statistics
Matches: 176, Mismatches: 14, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 34 0.19
40 138 0.78
41 4 0.02
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:87579015 original size:39 final size:40
Alignment explanation
Indices: 87578805--87579035 Score: 331
Period size: 40 Copynumber: 5.8 Consensus size: 40
87578795 GGATATAACT
* * *
87578805 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
*
87578845 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
87578885 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
87578925 ATTCGCACAAATGCCTTCGGGACTTAGCCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
87578965 ACTCGCACAGATGCCTTCGGGACTTAGCCCGGA-TTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* ** *
87579004 ACTAGTGCAGATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
87579036 TTTTCATCCA
Statistics
Matches: 176, Mismatches: 14, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 34 0.19
40 140 0.80
41 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:87586095 original size:40 final size:40
Alignment explanation
Indices: 87586035--87586254 Score: 271
Period size: 40 Copynumber: 5.5 Consensus size: 40
87586025 TAATCAGATG
*
87586035 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
**
87586075 ATATTTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * * *
87586118 ATACCCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
87586158 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
87586198 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
87586238 ATATCC-GGCTAAATCCC
1 ATATCCGGGCTAAGTCCC
87586255 AAAGATACTT
Statistics
Matches: 158, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 9 0.06
40 113 0.72
41 1 0.01
43 35 0.22
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:87586180 original size:83 final size:80
Alignment explanation
Indices: 87586041--87586254 Score: 270
Period size: 83 Copynumber: 2.6 Consensus size: 80
87586031 GATGATATCT
* ** **
87586041 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATTTGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCATG
*
87586106 CGAGTAGTTACTATACCC
66 C---TAGTGACTATACCC
* *
87586124 GGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCATG
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCATG
*
87586189 CTAGTGACTATATCC
66 CTAGTGACTATACCC
* * *
87586204 GGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCC
87586255 AAAGATACTT
Statistics
Matches: 117, Mismatches: 13, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
79 10 0.09
80 46 0.39
81 2 0.02
83 59 0.50
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCATG
CTAGTGACTATACCC
Done.