Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 263 of 349
Found at i:87588084 original size:43 final size:43
Alignment explanation
Indices: 87588028--87588200 Score: 163
Period size: 43 Copynumber: 4.0 Consensus size: 43
87588018 GACATAGGAT
* * *
87588028 TCGATATGTGTTTTCGTGTAAGACCATGTGTGGGACGTTGGCA
1 TCGATATCTGATTTCGTGTAAGACCATGTCTGGGACGTTGGCA
* * * * *
87588071 TCGACT-TCTGTTTTACGTGTAAGAACATGTATGGGACATCGGCA
1 TCGA-TATCTGATTT-CGTGTAAGACCATGTCTGGGACGTTGGCA
*
87588115 TCG-TATCTGATTTCGTGTAAGACCCTGTCTGGGACAG-TGGCA
1 TCGATATCTGATTTCGTGTAAGACCATGTCTGGGAC-GTTGGCA
* * * * * *
87588157 TCGATGTTTGATTACATGTAAGACTACGTCTGGGACGTTGGCA
1 TCGATATCTGATTTCGTGTAAGACCATGTCTGGGACGTTGGCA
87588200 T
1 T
87588201 TGTATATTTT
Statistics
Matches: 106, Mismatches: 18, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
42 28 0.26
43 49 0.46
44 29 0.27
ACGTcount: A:0.21, C:0.17, G:0.28, T:0.33
Consensus pattern (43 bp):
TCGATATCTGATTTCGTGTAAGACCATGTCTGGGACGTTGGCA
Found at i:87588148 original size:42 final size:41
Alignment explanation
Indices: 87588039--87588160 Score: 129
Period size: 42 Copynumber: 2.9 Consensus size: 41
87588029 CGATATGTGT
* * *
87588039 TTTCGTGTAAGACCATGTGTGGGACGTTGGCATCGACTTCTGT
1 TTTCGTGTAAGACCATGTATGGGAC-ATGGCATCGAC-TCTGA
*
87588082 TTTACGTGTAAGAACATGTATGGGACATCGGCATCGTA-TCTGA
1 TTT-CGTGTAAGACCATGTATGGGACAT-GGCATCG-ACTCTGA
* *
87588125 TTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGA
1 TTTCGTGTAAGACCATGTATGGGACA-TGGCATCGA
87588161 TGTTTGATTA
Statistics
Matches: 68, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
41 1 0.01
42 27 0.40
43 12 0.18
44 27 0.40
45 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (41 bp):
TTTCGTGTAAGACCATGTATGGGACATGGCATCGACTCTGA
Found at i:87593660 original size:88 final size:88
Alignment explanation
Indices: 87593476--87593649 Score: 244
Period size: 88 Copynumber: 2.0 Consensus size: 88
87593466 GTGAATTATG
* * * *
87593476 ATATGTGATGTGTGAGTAAGACCATGGCATTGATGCTTGATTCCTATATATGTTTGCGAGTAAGA
1 ATATGTGATGTGCGAGTAAGACCATGGCATCGATGATTGATTCCTATATATGTGTGCGAGTAAGA
*
87593541 CCACGTTTAATACGTTGGCATCA
66 CCACATTTAATACGTTGGCATCA
*
87593564 ATATGTGATGTGCGAGTAAGGCCATGGCATCGAT-ATGTGATT-CTGATATATGTGTGCGAGTAA
1 ATATGTGATGTGCGAGTAAGACCATGGCATCGATGAT-TGATTCCT-ATATATGTGTGCGAGTAA
* *
87593627 GTCCACATTTTATACGTTGGCAT
64 GACCACATTTAATACGTTGGCAT
87593650 TGAAATGTGA
Statistics
Matches: 76, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
87 3 0.04
88 73 0.96
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.34
Consensus pattern (88 bp):
ATATGTGATGTGCGAGTAAGACCATGGCATCGATGATTGATTCCTATATATGTGTGCGAGTAAGA
CCACATTTAATACGTTGGCATCA
Found at i:87604625 original size:40 final size:40
Alignment explanation
Indices: 87604237--87604624 Score: 632
Period size: 40 Copynumber: 9.7 Consensus size: 40
87604227 GCAAACACAC
* * * *
87604237 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCCTAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
**
87604277 TTGCCTTCGGGTCTTAGCCCGGATATATCGTCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* * *
87604317 TTGCCTTCGGGTCATAGCCCGGACATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
87604357 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
**
87604397 TTGCCTTCGGGTCTTAGCCCGGATATATCGTCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* * *
87604437 TTGCCTTCGGGTCATAGCCCGGACATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
87604477 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
87604517 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
87604557 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
87604597 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
87604625 TCCAATGCTC
Statistics
Matches: 323, Mismatches: 25, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 323 1.00
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:87607783 original size:94 final size:94
Alignment explanation
Indices: 87607622--87607803 Score: 355
Period size: 94 Copynumber: 1.9 Consensus size: 94
87607612 CAAATTCGAA
87607622 TACATCGCCAATCAAACTATGTTCATTAATTACAAATCATACATAAGATTATATGAACTTCTTTA
1 TACATCGCCAATCAAACTATGTTCATTAATTACAAATCATACATAAGATTATATGAACTTCTTTA
87607687 TAAACACTTCTAAACTCGAACATATTCAT
66 TAAACACTTCTAAACTCGAACATATTCAT
*
87607716 TACATCGCCAATCAAACTATGTTCATTTATTACAAATCATACATAAGATTATATGAACTTCTTTA
1 TACATCGCCAATCAAACTATGTTCATTAATTACAAATCATACATAAGATTATATGAACTTCTTTA
87607781 TAAACACTTCTAAACTCGAACAT
66 TAAACACTTCTAAACTCGAACAT
87607804 CCATAATTCT
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 87 1.00
ACGTcount: A:0.40, C:0.20, G:0.05, T:0.34
Consensus pattern (94 bp):
TACATCGCCAATCAAACTATGTTCATTAATTACAAATCATACATAAGATTATATGAACTTCTTTA
TAAACACTTCTAAACTCGAACATATTCAT
Found at i:87615960 original size:17 final size:18
Alignment explanation
Indices: 87615926--87615961 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
87615916 CATATTAAGG
*
87615926 GCCCGTGTGAGCCTACAC
1 GCCCGTGTGAGCCCACAC
87615944 GCCCGTGT-AGCCCACAC
1 GCCCGTGTGAGCCCACAC
87615961 G
1 G
87615962 GCCCAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.17, C:0.42, G:0.28, T:0.14
Consensus pattern (18 bp):
GCCCGTGTGAGCCCACAC
Found at i:87615965 original size:18 final size:19
Alignment explanation
Indices: 87615925--87615965 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
87615915 CCATATTAAG
*
87615925 GGCCCGTGTGAGCCTACAC
1 GGCCCGTGTGAGCCCACAC
87615944 -GCCCGTGT-AGCCCACAC
1 GGCCCGTGTGAGCCCACAC
87615961 GGCCC
1 GGCCC
87615966 AAAATAACCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.15, C:0.44, G:0.29, T:0.12
Consensus pattern (19 bp):
GGCCCGTGTGAGCCCACAC
Found at i:87619318 original size:39 final size:39
Alignment explanation
Indices: 87619275--87619441 Score: 235
Period size: 39 Copynumber: 4.3 Consensus size: 39
87619265 GGTCTTTAAC
** * *
87619275 CCGGATATTTTTCCAGCACGTAGCCTGTGGACCTCAAGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
* * *
87619314 CCGGATATATTTCTAGCATATAGGCTGCGGACCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
* *
87619353 CCAGATATTTTTCCAGCATATAGCCTGTGGACCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
*
87619392 CCGGATATTTTTCCAACATATAGCCTGCGGACCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
*
87619431 CCAGATATTTT
1 CCGGATATTTT
87619442 CAATCTCATA
Statistics
Matches: 112, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 112 1.00
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.32
Consensus pattern (39 bp):
CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
Found at i:87619394 original size:78 final size:78
Alignment explanation
Indices: 87619278--87619441 Score: 265
Period size: 78 Copynumber: 2.1 Consensus size: 78
87619268 CTTTAACCCG
* * * *
87619278 GATATTTTTCCAGCACGTAGCCTGTGGACCTCAAGTCCGGATATATTTCTAGCATATAGGCTGCG
1 GATATTTTTCCAGCACATAGCCTGTGGACCTCAAGTCCGGATATATTTCCAACATATAGCCTGCG
87619343 GACCTCATGTCCA
66 GACCTCATGTCCA
* * *
87619356 GATATTTTTCCAGCATATAGCCTGTGGACCTCATGTCCGGATATTTTTCCAACATATAGCCTGCG
1 GATATTTTTCCAGCACATAGCCTGTGGACCTCAAGTCCGGATATATTTCCAACATATAGCCTGCG
87619421 GACCTCATGTCCA
66 GACCTCATGTCCA
87619434 GATATTTT
1 GATATTTT
87619442 CAATCTCATA
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
78 79 1.00
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32
Consensus pattern (78 bp):
GATATTTTTCCAGCACATAGCCTGTGGACCTCAAGTCCGGATATATTTCCAACATATAGCCTGCG
GACCTCATGTCCA
Found at i:87623276 original size:763 final size:759
Alignment explanation
Indices: 87621781--87624407 Score: 3579
Period size: 762 Copynumber: 3.5 Consensus size: 759
87621771 CAAATGTAAC
* * * * * *
87621781 ACCCCTAACCAGTATCCATCGACGTACTAAGGTTAAGAAGCATTATCGGACATATCAAAACATTT
1 ACCCCTAACCCGTATCCATCGTCGGACTAGGGTTAAGAGGCATTACCGGACATATCAAAACATTT
* *
87621846 CGCAACCATTTCACAATCAAAAGTCATGCATCATCATATCATAGTCAAACATCAACATTAAGACC
66 CGCAATCATTTCACAATCAAAAGTCATGCATCATCATATCATAGTCAAACATCAACATTAAGTCC
* * * * *
87621911 CTTTCTTAGGTCAATGAGACCATAAACTTGCATCAGGAAGAGGTCGGGACTAAACCGAACATATT
131 ATTTCTTAGGTCAATGAGACCATAAACATGCATTAGGAAGAGGTCGGGACTAAACCGAACACA-G
* *
87621976 A-AAAATTTTTCTGAAACTTAACAATTTTTCTAAGTTACAAAGATCACATGCCCGTGTGAGCAGA
195 ACAAAATTTTTCTGAAACTTAACAATTTTTCTAAGCTACAAAGATCACATGCCCATGTGAGCAGA
* * *
87622040 CCGTGTGCCTCACACGACATTAGCCACGCCCATGTGTCTAGGCCATGGTGAAATAGGGCATACAT
260 CCGTGTGCCTCACACGGCATTAGACACGCCCATGTGTCTAGGCCATGGCGAAATAGGGCATACAT
*
87622105 ACTAACTTATCCACACGGCCACAAGACACGCCCGTGTGTCTAGCCCGTGGTTGAAACTGACTTGG
325 ACTAACTTATCCACACGGCCACAAGACACGCCCGTGTGTCTAGCCCGTGGTCGAAACTGACTTGG
* * *
87622170 CCACACAGACTGGCACA-----------CGC-CCGTGTGGTCTGCCCAGGCTCATTTCGAAATGG
390 CCACACAGCCTGGCACACGCTTGGTGTTCGCACCGTGTGGTCTACCCAAGCTCATTTCGAAATGG
* * * * *
87622223 CCCTCGAGCAACACGACAGAGACACACACCCATGTCACTGCCCGTGTGGGTAAAAATAGACCATT
455 CCCTCGAGCAACACGACAGAGACACACGCCCGTG-CCCTGCCCGTGTGGGAAAAAATAGGCCATT
* * *
87622288 TACAAGGCCAATATGCCACCCATTTGGGTCCTCCCTGCAACTCCAAAATCAGGCATCATATATGC
519 TACAAGGCCAATATGCCACCCATTTGGGTCCTCCCTACAATTCCAAAATCAAGCATCATATATGC
* *
87622353 AACATTTTCAGCCAAACTCAACTCCAAACATGTATCAATCAATTCATAATATCACCAACAAATTT
584 AACATTTTCAGCCAAATTCAACTCCAAACATGTATCAATCAATTCATAATATCATCAACAAATTT
* * * *
87622418 CATGCTCAATCGATATATCAAAGCATATTAAAATCACATGCTAAAGC-TTACCAAATTCCTAACT
649 CATGCTCATTCTATATATCAAAGCATATTAAAATCACATGCTAAA-CATTACCAAATTCCCAAAT
* * *
87622482 ATGAACATACTAAACTGACCATTTCACTTGGCCATATACATATATAT
713 ATGGACATACCAAAATGACCATTTCACTTGGCCATATACATATATAT
***
87622529 ACCCCTAACCCGTATCCATCG-CTGGACTAGGGTTAAGAGGCATTACCGGACATATTGGAACATT
1 ACCCCTAACCCGTATCCATCGTC-GGACTAGGGTTAAGAGGCATTACCGGACATATCAAAACATT
* * * ** *
87622593 TTGCAATTATTTCACAATCAAAAGTCATCCATTGTCATATCATAGTCAAACATCAATATTAAGTC
65 TCGCAATCATTTCACAATCAAAAGTCATGCATCATCATATCATAGTCAAACATCAACATTAAGTC
* *
87622658 CATTCCTTAGGTCAATGAGACCATAAACATGCATTAGGAAGAGGTCGGGACTAAACCGAACACAT
130 CATTTCTTAGGTCAATGAGACCATAAACATGCATTAGGAAGAGGTCGGGACTAAACCGAACACAG
* * * * *
87622723 ACAAAATTTTTTTGAAACATAACAATTTTTCTAAGTTACAAAGATCACATGCCCATGTGACCAAA
195 ACAAAATTTTTCTGAAACTTAACAATTTTTCTAAGCTACAAAGATCACATGCCCATGTGAGCAGA
* * * * *
87622788 TCGTGTGCCTTACACGGCATTGGACAAGCCCATGTGTCTAGGCTATGGCGAAATAGGGCATACAT
260 CCGTGTGCCTCACACGGCATTAGACACGCCCATGTGTCTAGGCCATGGCGAAATAGGGCATACAT
* * * *
87622853 ACTAACTTATCCACACGGCCCACAAGACACGCCAGTGTTTCTAGCCCATGGTCGAAACTGACTTT
325 ACTAACTTATCCACACGG-CCACAAGACACGCCCGTGTGTCTAGCCCGTGGTCGAAACTGACTTG
* * * * *
87622918 GCCAAAGAGCCTGGCACACGCTTGTGTGTTCGCAACCGTGTGGGCTACCCAAGCTCATTACAAAA
389 GCCACACAGCCTGGCACACGCTTG-GTGTTCGC-ACCGTGTGGTCTACCCAAGCTCATTTCGAAA
* * * * * * *
87622983 TGGCCCTCAAGCAACACGACCGAGACACATGCCCGTGCCGCTACCCATGCGGGCAAAAATAGGCC
452 TGGCCCTCGAGCAACACGACAGAGACACACGCCCGTGCC-CTGCCCGTGTGGGAAAAAATAGGCC
*
87623048 ATTTACTAGGCCAATATGCCACCCATTTGGGTCCTCCCTACAATTCCAAAATCAAGCATCATATA
516 ATTTACAAGGCCAATATGCCACCCATTTGGGTCCTCCCTACAATTCCAAAATCAAGCATCATATA
* *
87623113 TGAAACATTTTCAGCCAAATTCAACTCCAAACATGTATCAATCAATTCATAATATCATCAACCAA
581 TGCAACATTTTCAGCCAAATTCAACTCCAAACATGTATCAATCAATTCATAATATCATCAACAAA
* *
87623178 TTTCATGCTCATTCTTTATATCAAAGTATATTAAAATCACATGCTAAACATTACCAAATTCCCAA
646 TTTCATGCTCATTCTATATATCAAAGCATATTAAAATCACATGCTAAACATTACCAAATTCCCAA
*
87623243 ATATGGACATACCAAAATGACCATTTCACTTGGCCATATACATATATGT
711 ATATGGACATACCAAAATGACCATTTCACTTGGCCATATACATATATAT
* * *
87623292 ACCCCTAACCCGTATCCATCGTCGGACTAGGGTTAAGAGGCATTACAGGGCATATCAGAACATTT
1 ACCCCTAACCCGTATCCATCGTCGGACTAGGGTTAAGAGGCATTACCGGACATATCAAAACATTT
* * * ** * * *
87623357 CGTAATCATTTCACAATCAATAGTCATGTATTGTCATATCGTAGTCAAA-ATTTAACATTAAGCC
66 CGCAATCATTTCACAATCAAAAGTCATGCATCATCATATCATAGTCAAACA-TCAACATTAAGTC
* * * *
87623421 CATTTCTTAGGTCAATGAGACCATAAACATGTATTAGGAAGAGGTCAGGACTAAACAGATCACAG
130 CATTTCTTAGGTCAATGAGACCATAAACATGCATTAGGAAGAGGTCGGGACTAAACCGAACACAG
* *
87623486 ACAAAATTTTTCTGAAACTTAACCATTTTCCTAAGCTACAAAGATCACACT-CCCATGTGAGCAG
195 ACAAAATTTTTCTGAAACTTAACAATTTTTCTAAGCTACAAAGATCACA-TGCCCATGTGAGCAG
* * ** * * * *
87623550 ACTGTGTGCCTCACACGGCATTAGACACTCCTGTGTGTCTAGGTCGTGGTGAAACAGGGCATACA
259 ACCGTGTGCCTCACACGGCATTAGACACGCCCATGTGTCTAGGCCATGGCGAAATAGGGCATACA
* * * * *
87623615 TACTGACTTATCCACATGACCACAAGACACGCCCTTGTGTCTAGCCCGTGGTCGAAACTTACTTG
324 TACTAACTTATCCACACGGCCACAAGACACGCCCGTGTGTCTAGCCCGTGGTCGAAACTGACTTG
* * *
87623680 GCCACACAGCCTGGCACACGCTGGTGCGTGTTTG-ACTGTGTGGTCTA-CCAAGGGTCATTTCGA
389 GCCACACAGCCTGGCACACGCT--TG-GTGTTCGCACCGTGTGGTCTACCCAA-GCTCATTTCGA
* * * *
87623743 GATGGCCCTCGAGCAACACGGCAGAGACACACGCCCGTGTCCTTGCCCGTGTGGTAAAAAATAGG
450 AATGGCCCTCGAGCAACACGACAGAGACACACGCCCGTG-CCCTGCCCGTGTGGGAAAAAATAGG
* * *
87623808 CCATTTAAAAGGACAATATGCCACCCATTTGGATCCTCCCTACAATTCCAAAATCAAGCATCATA
514 CCATTTACAAGGCCAATATGCCACCCATTTGGGTCCTCCCTACAATTCCAAAATCAAGCATCATA
* * *
87623873 TATGCAACATTTTTAGCCAAATTCAAC-CTCAAACATGTATCAATCAATTCATAACATCATCAAG
579 TATGCAACATTTTCAGCCAAATTCAACTC-CAAACATGTATCAATCAATTCATAATATCATCAAC
* * **
87623937 AAATTTCGTGCTCATTCTCTATATCAAAGCATATTAAAATCACATTATAAACATTACCAAATT-C
643 AAATTTCATGCTCATTCTATATATCAAAGCATATTAAAATCACATGCTAAACATTACCAAATTCC
*
87624001 CAAACTATGGACATACCAAAATGACCATTTCACTTGGCCAGATACATATATAT
708 CAAA-TATGGACATACCAAAATGACCATTTCACTTGGCCATATACATATATAT
* * *
87624054 ACCCCTAACCCATATCCATCGTCGGACTAGGGTTAAGAGGCATTAACGGACATATCGAAACATTT
1 ACCCCTAACCCGTATCCATCGTCGGACTAGGGTTAAGAGGCATTACCGGACATATCAAAACATTT
** * * * ** **
87624119 CATAATTATTTCAAAATCAATAGTCATTTATCATCATATCATAGTCAAACATTTACATTAAGTCC
66 CGCAATCATTTCACAATCAAAAGTCATGCATCATCATATCATAGTCAAACATCAACATTAAGTCC
* *
87624184 CTTTCTTAGGTCAATGATACCATAAACATGCATTAGGAAGAGGTCGGGACTAAACCGAACACAGA
131 ATTTCTTAGGTCAATGAGACCATAAACATGCATTAGGAAGAGGTCGGGACTAAACCGAACACAGA
* *
87624249 CAAAATTTTT-TCGAAACTTAACAATTTTTCTAAGCTACAAATATCACATGCCCGTGTGAGCAGA
196 CAAAATTTTTCT-GAAACTTAACAATTTTTCTAAGCTACAAAGATCACATGCCCATGTGAGCAGA
* * * *
87624313 CCTTGTGCCTCACACGGCATTAGACACGCCCGTGTGTCTAGGCCGTGGCAAAATAGGGCATACAT
260 CCGTGTGCCTCACACGGCATTAGACACGCCCATGTGTCTAGGCCATGGCGAAATAGGGCATACAT
*
87624378 ACTGACTTATCCACACGGCCACAAGACACG
325 ACTAACTTATCCACACGGCCACAAGACACG
87624408 TGTAACATCC
Statistics
Matches: 1652, Mismatches: 196, Indels: 48
0.87 0.10 0.03
Matches are distributed among these distances:
747 3 0.00
748 303 0.18
749 56 0.03
761 15 0.01
762 668 0.40
763 597 0.36
764 10 0.01
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.25
Consensus pattern (759 bp):
ACCCCTAACCCGTATCCATCGTCGGACTAGGGTTAAGAGGCATTACCGGACATATCAAAACATTT
CGCAATCATTTCACAATCAAAAGTCATGCATCATCATATCATAGTCAAACATCAACATTAAGTCC
ATTTCTTAGGTCAATGAGACCATAAACATGCATTAGGAAGAGGTCGGGACTAAACCGAACACAGA
CAAAATTTTTCTGAAACTTAACAATTTTTCTAAGCTACAAAGATCACATGCCCATGTGAGCAGAC
CGTGTGCCTCACACGGCATTAGACACGCCCATGTGTCTAGGCCATGGCGAAATAGGGCATACATA
CTAACTTATCCACACGGCCACAAGACACGCCCGTGTGTCTAGCCCGTGGTCGAAACTGACTTGGC
CACACAGCCTGGCACACGCTTGGTGTTCGCACCGTGTGGTCTACCCAAGCTCATTTCGAAATGGC
CCTCGAGCAACACGACAGAGACACACGCCCGTGCCCTGCCCGTGTGGGAAAAAATAGGCCATTTA
CAAGGCCAATATGCCACCCATTTGGGTCCTCCCTACAATTCCAAAATCAAGCATCATATATGCAA
CATTTTCAGCCAAATTCAACTCCAAACATGTATCAATCAATTCATAATATCATCAACAAATTTCA
TGCTCATTCTATATATCAAAGCATATTAAAATCACATGCTAAACATTACCAAATTCCCAAATATG
GACATACCAAAATGACCATTTCACTTGGCCATATACATATATAT
Found at i:87628095 original size:15 final size:15
Alignment explanation
Indices: 87628075--87628107 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
87628065 TTTCGAATCT
87628075 ATTCTTTATTTCGGG
1 ATTCTTTATTTCGGG
87628090 ATTCTTTATTTCGGG
1 ATTCTTTATTTCGGG
87628105 ATT
1 ATT
87628108 TAGAACAGCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.15, C:0.12, G:0.18, T:0.55
Consensus pattern (15 bp):
ATTCTTTATTTCGGG
Found at i:87628976 original size:27 final size:26
Alignment explanation
Indices: 87628915--87629027 Score: 109
Period size: 27 Copynumber: 4.2 Consensus size: 26
87628905 AGGAAGCGTC
* *
87628915 CTGGTGGCTATACCACAAATTATCTGAT
1 CTGGTGGCTCTACCAC--ATTATCTGTT
*
87628943 CTAGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTCTACCACAT-TATCTGTT
* *
87628970 TTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTACCAC-ATTATCTGT-T
* **
87628998 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTACCACATTATCTGTT
87629024 CTGG
1 CTGG
87629028 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
26 7 0.10
27 36 0.49
28 30 0.41
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTACCACATTATCTGTT
Found at i:87636759 original size:27 final size:26
Alignment explanation
Indices: 87636698--87636810 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
87636688 AGGAAGCGTC
* * *
87636698 CTGGTGGCTATACCACAAATTATCTGAT
1 CTGGTGGCTCTGCCAC--ATTATCTGTT
87636726 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
*
87636753 CTAGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
87636781 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
87636807 CTGG
1 CTGG
87636811 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
26 7 0.09
27 38 0.51
28 30 0.40
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:87638714 original size:42 final size:43
Alignment explanation
Indices: 87638615--87638774 Score: 173
Period size: 43 Copynumber: 3.7 Consensus size: 43
87638605 ACCTTGTACA
* * * **
87638615 ATGCCAACGTCCCAGACGTGGTCTTATATGTGATCAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAATCAAATATCG
* *
87638658 ATGCC-ACTGTCCCAGACAAGGTCTTACACGAAATCATATA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGAAATCAAATATCG
* *
87638700 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCACAA-ATCA
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AAATCA-AATATCG
* *
87638744 ATGCCAACGTCTCAGACGTGGTCTTACACGA
1 ATGCCAACGTCCCAGACATGGTCTTACACGA
87638775 TAACACATAT
Statistics
Matches: 98, Mismatches: 14, Indels: 10
0.80 0.11 0.08
Matches are distributed among these distances:
42 30 0.31
43 39 0.40
44 29 0.30
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAAATCAAATATCG
Found at i:87641288 original size:42 final size:41
Alignment explanation
Indices: 87641198--87641308 Score: 125
Period size: 42 Copynumber: 2.6 Consensus size: 41
87641188 TACCGTATCA
* * *
87641198 ATGCCATATCCCGAATATGGTCTTACATGAAATATCATATCG
1 ATGCCATATCCC-AATATGGTCTTATATGAAATATCACACCG
* * *
87641240 ACGCCATGTCCCTAACATGGTCTTATATGAAATCA-CACACCG
1 ATGCCATATCCC-AATATGGTCTTATATGAAAT-ATCACACCG
87641282 ATGCCATATCCCAGATATGGTCTTATA
1 ATGCCATATCCCA-ATATGGTCTTATA
87641309 CAGAATCTCA
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
41 1 0.02
42 55 0.96
43 1 0.02
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (41 bp):
ATGCCATATCCCAATATGGTCTTATATGAAATATCACACCG
Found at i:87646843 original size:27 final size:27
Alignment explanation
Indices: 87646813--87646990 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
87646803 ATATTGAGTC
* * * *
87646813 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
87646840 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
87646867 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
87646895 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
87646922 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
87646949 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
87646976 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
87646991 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:87646952 original size:82 final size:81
Alignment explanation
Indices: 87646834--87646989 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
87646824 TGCTATATAA
* *
87646834 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
87646899 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
87646916 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
87646980 CACTTAGTGC
65 CACTTAGTGC
87646990 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:87650255 original size:47 final size:47
Alignment explanation
Indices: 87650201--87650846 Score: 1103
Period size: 47 Copynumber: 13.6 Consensus size: 47
87650191 TATTTGAATA
87650201 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
87650248 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
87650297 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
87650344 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
87650391 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
87650440 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
87650487 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
87650536 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
87650583 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
87650630 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
87650679 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
87650726 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
87650773 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
87650820 GATGTGAAAGTGTATAAATATGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
87650847 TCCCGAAGGG
Statistics
Matches: 572, Mismatches: 19, Indels: 16
0.94 0.03 0.03
Matches are distributed among these distances:
47 388 0.68
49 184 0.32
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:87650309 original size:96 final size:94
Alignment explanation
Indices: 87650201--87650846 Score: 1103
Period size: 96 Copynumber: 6.8 Consensus size: 94
87650191 TATTTGAATA
87650201 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
87650266 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
87650297 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
87650362 TGTGATAAGGCCTAATGGCCGATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
87650391 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
87650456 TATGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
87650487 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
87650552 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
87650583 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
*
87650648 TATGTGATAAGGCCTAATAGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
87650679 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
87650744 TGTGATAAGGCCTAATGGCCGATGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
87650773 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
87650838 TATGATAAG
66 TGTGATAAG
87650847 TCCCGAAGGG
Statistics
Matches: 528, Mismatches: 18, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
94 193 0.37
96 335 0.63
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:87650459 original size:143 final size:143
Alignment explanation
Indices: 87650201--87650841 Score: 1110
Period size: 143 Copynumber: 4.5 Consensus size: 143
87650191 TATTTGAATA
87650201 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
87650266 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
*
87650331 AGCCGATGTGATG
131 GGCCGATGTGATG
87650344 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
87650409 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
*
87650474 GGCCAATGTGATG
131 GGCCGATGTGATG
87650487 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
87650550 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
64 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
87650615 ATGGCCGATGTGATG
129 ATGGCCGATGTGATG
*
87650630 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
87650693 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
64 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
87650758 ATGGCCGATGTGATG
129 ATGGCCGATGTGATG
* * * * * * *
87650773 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
87650838 TATG
66 TATG
87650842 ATAAGTCCCG
Statistics
Matches: 480, Mismatches: 14, Indels: 8
0.96 0.03 0.02
Matches are distributed among these distances:
141 40 0.08
143 393 0.82
145 47 0.10
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (143 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
GGCCGATGTGATG
Found at i:87652330 original size:40 final size:40
Alignment explanation
Indices: 87652275--87652403 Score: 222
Period size: 40 Copynumber: 3.2 Consensus size: 40
87652265 GAGAATTGAG
87652275 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
87652315 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTTGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
87652355 AGTGATATATCCAGGTTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
87652395 AGTGATATA
1 AGTGATATA
87652404 ATTTATCACA
Statistics
Matches: 83, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 83 1.00
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:87660978 original size:16 final size:16
Alignment explanation
Indices: 87660953--87660983 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
87660943 ATCTATAAGA
*
87660953 CACATTTTTCATTATC
1 CACATATTTCATTATC
87660969 CACATATTTCATTAT
1 CACATATTTCATTAT
87660984 AATCATACTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.23, G:0.00, T:0.48
Consensus pattern (16 bp):
CACATATTTCATTATC
Found at i:87670494 original size:43 final size:43
Alignment explanation
Indices: 87670406--87670598 Score: 192
Period size: 43 Copynumber: 4.5 Consensus size: 43
87670396 TCTAAAATAT
* * * *
87670406 GATTTCATGTAAGACCACGTCTAGGACGTTGGCATCAATTTGA
1 GATTTCGTGTAAGACCATGTCTAGGACATTGGCATCAATTAGA
* * *
87670449 GATATT-GTGTAAGACCATGTCTAGTACATTGACATCGATTAGA
1 GAT-TTCGTGTAAGACCATGTCTAGGACATTGGCATCAATTAGA
* * * *
87670492 GATTTCATGTAAGACCACGTTTAGGACATTGGCATCAATTTGA
1 GATTTCGTGTAAGACCATGTCTAGGACATTGGCATCAATTAGA
* * * * * * *
87670535 GATATCGTGTAAGACCGTGTTTGGGACACT-GCATCGATTACA
1 GATTTCGTGTAAGACCATGTCTAGGACATTGGCATCAATTAGA
*
87670577 GATTTCGTGTAAGACCCTGTCT
1 GATTTCGTGTAAGACCATGTCT
87670599 GGTATAGTGG
Statistics
Matches: 122, Mismatches: 26, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
42 30 0.25
43 90 0.74
44 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.32
Consensus pattern (43 bp):
GATTTCGTGTAAGACCATGTCTAGGACATTGGCATCAATTAGA
Found at i:87670821 original size:56 final size:56
Alignment explanation
Indices: 87670698--87670824 Score: 227
Period size: 56 Copynumber: 2.3 Consensus size: 56
87670688 AATACGTTGA
* *
87670698 CATCGATATGTAATTTCAATATGTGTTTACGAGTAAGACCCTATCTGGGACAGTGG
1 CATCGATATGTGATTTCAATATGTGTTTACGAGTAAGACCCTATCTGGGACAGAGG
*
87670754 CATCGATATGTGATTTCAATATGTGTTTATGAGTAAGACCCTATCTGGGACAGAGG
1 CATCGATATGTGATTTCAATATGTGTTTACGAGTAAGACCCTATCTGGGACAGAGG
87670810 CATCGATATGTGATT
1 CATCGATATGTGATT
87670825 ACATGTAAGA
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 68 1.00
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (56 bp):
CATCGATATGTGATTTCAATATGTGTTTACGAGTAAGACCCTATCTGGGACAGAGG
Found at i:87678141 original size:43 final size:43
Alignment explanation
Indices: 87678090--87678326 Score: 172
Period size: 43 Copynumber: 5.5 Consensus size: 43
87678080 AGATATGATT
** *
87678090 TCGTGTAAGACCACGTCTGGGACATTGATATCGATTTGAGATA
1 TCGTGTAAGACCACGTCTGGGACATTGGCATCGATTAGAGATA
* ** * ** * * *
87678133 TAGTGTAAGACCGTGCCTAAGACACTGGCATTGATTAGAGATT
1 TCGTGTAAGACCACGTCTGGGACATTGGCATCGATTAGAGATA
* * ** *
87678176 TCGTGTAAGACGACGTTTGGGATGTTGGCATCGATTTGAGATA
1 TCGTGTAAGACCACGTCTGGGACATTGGCATCGATTAGAGATA
* ** * *
87678219 TCGTCTAAGACCGTGTCTGGGACATTGGCATCGATTAGTGATT
1 TCGTGTAAGACCACGTCTGGGACATTGGCATCGATTAGAGATA
** * ** *
87678262 TCGTGTAAGACCTTGTCTAGGACAAAGGCATCGA-TATGTGAT-
1 TCGTGTAAGACCACGTCTGGGACATTGGCATCGATTA-GAGATA
* *
87678304 TACATGTAAGACCACGTTTGGGA
1 T-CGTGTAAGACCACGTCTGGGA
87678327 TGTTAGCATT
Statistics
Matches: 146, Mismatches: 46, Indels: 4
0.74 0.23 0.02
Matches are distributed among these distances:
42 3 0.02
43 143 0.98
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (43 bp):
TCGTGTAAGACCACGTCTGGGACATTGGCATCGATTAGAGATA
Found at i:87678292 original size:86 final size:86
Alignment explanation
Indices: 87678085--87678296 Score: 253
Period size: 86 Copynumber: 2.5 Consensus size: 86
87678075 TTCCGAGATA
** *
87678085 TGATTTCGTGTAAGACCACGTCTGGGACATTGATATCGATTTGAGATATAGTGTAAGACCGTGCC
1 TGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCGATTTGAGATATAGTCTAAGACCGTGCC
*
87678150 TAAGACACTGGCATTGATTAG
66 TAAGACACTGGCATCGATTAG
* * * ** * *
87678171 AGATTTCGTGTAAGACGACGTTTGGGATGTTGGCATCGATTTGAGATATCGTCTAAGACCGTGTC
1 TGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCGATTTGAGATATAGTCTAAGACCGTGCC
** *
87678236 TGGGACATTGGCATCGATTAG
66 TAAGACACTGGCATCGATTAG
** * **
87678257 TGATTTCGTGTAAGACCTTGTCTAGGACAAAGGCATCGAT
1 TGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCGAT
87678297 ATGTGATTAC
Statistics
Matches: 102, Mismatches: 24, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
86 102 1.00
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (86 bp):
TGATTTCGTGTAAGACCACGTCTGGGACATTGGCATCGATTTGAGATATAGTCTAAGACCGTGCC
TAAGACACTGGCATCGATTAG
Found at i:87678325 original size:129 final size:129
Alignment explanation
Indices: 87678090--87678335 Score: 296
Period size: 129 Copynumber: 1.9 Consensus size: 129
87678080 AGATATGATT
* * *
87678090 TCGTGTAAGACCACGTCTGGGACATTGATATCGATTTGAGATATAGTGTAAGACCGTGCCTAAGA
1 TCGTCTAAGACCACGTCTGGGACATTGACATCGATTAGAGATATAGTGTAAGACCGTGCCTAAGA
** * * * * *
87678155 CACTGGCATTGATTAGAGATTTCGTGTAAGACGACGTTTGGGATGTTGGCATCGATTTGAGATA
66 CAAAGGCATCGATTAGAGATTACATGTAAGACCACGTTTGGGATGTTAGCATCGATTTGAGATA
** * * * * * * *
87678219 TCGTCTAAGACCGTGTCTGGGACATTGGCATCGATTAGTGATTTCGTGTAAGACCTTGTCTAGGA
1 TCGTCTAAGACCACGTCTGGGACATTGACATCGATTAGAGATATAGTGTAAGACCGTGCCTAAGA
*
87678284 CAAAGGCATCGA-TATGTGATTACATGTAAGACCACGTTTGGGATGTTAGCAT
66 CAAAGGCATCGATTA-GAGATTACATGTAAGACCACGTTTGGGATGTTAGCAT
87678336 TGTACAATAT
Statistics
Matches: 96, Mismatches: 20, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
128 2 0.02
129 94 0.98
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.30
Consensus pattern (129 bp):
TCGTCTAAGACCACGTCTGGGACATTGACATCGATTAGAGATATAGTGTAAGACCGTGCCTAAGA
CAAAGGCATCGATTAGAGATTACATGTAAGACCACGTTTGGGATGTTAGCATCGATTTGAGATA
Found at i:87678459 original size:43 final size:43
Alignment explanation
Indices: 87678395--87678481 Score: 108
Period size: 43 Copynumber: 2.0 Consensus size: 43
87678385 ATATGTTAAT
* *
87678395 TCAATATGTGTTTACGAGTAAGACC-CTGTCTGGGACAG-TGGCA
1 TCAATAAGTGATTACGAGTAAGACCAC-GTCTGGGAC-GTTGGCA
87678438 TCAATAAGTGATTAC-ATGTAAGACCACGTCTGGGACGTTGGCA
1 TCAATAAGTGATTACGA-GTAAGACCACGTCTGGGACGTTGGCA
87678481 T
1 T
87678482 TGTACAATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
42 2 0.05
43 36 0.92
44 1 0.03
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (43 bp):
TCAATAAGTGATTACGAGTAAGACCACGTCTGGGACGTTGGCA
Found at i:87688758 original size:29 final size:29
Alignment explanation
Indices: 87688725--87688835 Score: 150
Period size: 29 Copynumber: 3.8 Consensus size: 29
87688715 TGCAATAAGA
*
87688725 TCGCACACTTAATGCTCGATAGTTTTACT
1 TCGCACACTTAATGCTCGATAATTTTACT
* *
87688754 TCGCACACTTAGTGCTCAATAATTTTACT
1 TCGCACACTTAATGCTCGATAATTTTACT
* * * *
87688783 TCGCACACTTAGTGCTTGTTAATTTTTCT
1 TCGCACACTTAATGCTCGATAATTTTACT
*
87688812 TTGCACACTTAATGCTCGATAATT
1 TCGCACACTTAATGCTCGATAATT
87688836 CACATATATA
Statistics
Matches: 71, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 71 1.00
ACGTcount: A:0.24, C:0.23, G:0.13, T:0.41
Consensus pattern (29 bp):
TCGCACACTTAATGCTCGATAATTTTACT
Found at i:87689116 original size:30 final size:30
Alignment explanation
Indices: 87689082--87689151 Score: 133
Period size: 30 Copynumber: 2.4 Consensus size: 30
87689072 TTAAAAATTC
87689082 AAATTGAACTCATTCAAAGAAAATTTTATT
1 AAATTGAACTCATTCAAAGAAAATTTTATT
87689112 AAATTGAACTCATTCAAAGAAAATTTTATT
1 AAATTGAACTCATTCAAAGAAAATTTTATT
87689142 AAATT-AACTC
1 AAATTGAACTC
87689152 CAAAACTCAT
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
29 5 0.12
30 35 0.88
ACGTcount: A:0.47, C:0.11, G:0.06, T:0.36
Consensus pattern (30 bp):
AAATTGAACTCATTCAAAGAAAATTTTATT
Found at i:87689159 original size:37 final size:41
Alignment explanation
Indices: 87689118--87689207 Score: 107
Period size: 45 Copynumber: 2.2 Consensus size: 41
87689108 TATTAAATTG
87689118 AACTCAT-T-CAAA-GA-AAATTTTATTAAATTAACTCCAA
1 AACTCATATACAAATGACAAATTTTATTAAATTAACTCCAA
*
87689155 AACTCATAGTCAAGCAAATTACAAATTTTATTAAATTAACTCCAA
1 AACTCATA-T--A-CAAATGACAAATTTTATTAAATTAACTCCAA
87689200 AACTCATA
1 AACTCATA
87689208 ATCAAGCAAA
Statistics
Matches: 44, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
37 7 0.16
39 1 0.02
43 4 0.09
44 1 0.02
45 31 0.70
ACGTcount: A:0.48, C:0.18, G:0.03, T:0.31
Consensus pattern (41 bp):
AACTCATATACAAATGACAAATTTTATTAAATTAACTCCAA
Found at i:87689196 original size:45 final size:45
Alignment explanation
Indices: 87689132--87689226 Score: 172
Period size: 45 Copynumber: 2.1 Consensus size: 45
87689122 CATTCAAAGA
*
87689132 AAATTTTATTAAATTAACTCCAAAACTCATAGTCAAGCAAATTAC
1 AAATTTTATTAAATTAACTCCAAAACTCATAATCAAGCAAATTAC
87689177 AAATTTTATTAAATTAACTCCAAAACTCATAATCAAGCAAATTAC
1 AAATTTTATTAAATTAACTCCAAAACTCATAATCAAGCAAATTAC
*
87689222 CAATT
1 AAATT
87689227 ATCCCTTCAC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.47, C:0.18, G:0.03, T:0.32
Consensus pattern (45 bp):
AAATTTTATTAAATTAACTCCAAAACTCATAATCAAGCAAATTAC
Found at i:87695760 original size:27 final size:27
Alignment explanation
Indices: 87695720--87695783 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 27
87695710 GGAAAAACAA
* *
87695720 TCATTTTACCCTACAGGGGTATGTCGG
1 TCATTTTACACTACAAGGGTATGTCGG
* *
87695747 TCATTTTACACTACAAGGGTATTTTGG
1 TCATTTTACACTACAAGGGTATGTCGG
*
87695774 TAATTTTACA
1 TCATTTTACA
87695784 AATTGAGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.39
Consensus pattern (27 bp):
TCATTTTACACTACAAGGGTATGTCGG
Found at i:87695792 original size:27 final size:27
Alignment explanation
Indices: 87695736--87696020 Score: 344
Period size: 27 Copynumber: 10.6 Consensus size: 27
87695726 TACCCTACAG
* * * *
87695736 GGGTATGTCGGTCATTTTAC-ACTACAA
1 GGGTATTTCGGTAATTTTACAAAT-CGA
* *
87695763 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTCGGTAATTTTACAAATCGA
*
87695790 GGGTATTTCGGTAATTTTACAAATCAA
1 GGGTATTTCGGTAATTTTACAAATCGA
* **
87695817 AGGTATTTCAATAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
** *
87695844 GGGTATTTTAGTAATTTCAC-AATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
87695870 GGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
*
87695897 GGGTATTTCGTTAATTTTAC-AATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
87695923 GGGTATTTTGGTAATTTTACAAATCGG
1 GGGTATTTCGGTAATTTTACAAATCGA
*
87695950 GGGTATTTGGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * *
87695977 AGGTGTTTCGGTAATTTCACAAATCTG-
1 GGGTATTTCGGTAATTTTACAAATC-GA
87696004 GGGTATTTCGGTAATTT
1 GGGTATTTCGGTAATTT
87696021 ACCTTTATTA
Statistics
Matches: 222, Mismatches: 32, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
26 47 0.21
27 172 0.77
28 3 0.01
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATCGA
Found at i:87696022 original size:53 final size:54
Alignment explanation
Indices: 87695764--87696020 Score: 340
Period size: 53 Copynumber: 4.8 Consensus size: 54
87695754 ACACTACAAG
* * *
87695764 GGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAATCAAA
1 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAA
** ** * *
87695818 GGTATTTCAATAATTTTACAAATCGAGGGTATTTTAGTAATTTCAC-AATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAA
* *
87695871 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGTTAATTTTAC-AATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAA
* * *
87695924 GGTATTTTGGTAATTTTACAAATCGGGGGTATTTGGGTAATTTTACAAATCGAA
1 GGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAA
* *
87695978 GGTGTTTCGGTAATTTCACAAATCTG-GGGTATTTCGGTAATTT
1 GGTATTTCGGTAATTTTACAAATC-GAGGGTATTTCGGTAATTT
87696021 ACCTTTATTA
Statistics
Matches: 177, Mismatches: 24, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
53 94 0.53
54 82 0.46
55 1 0.01
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.40
Consensus pattern (54 bp):
GGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAA
Found at i:87696022 original size:80 final size:81
Alignment explanation
Indices: 87695762--87696020 Score: 371
Period size: 80 Copynumber: 3.2 Consensus size: 81
87695752 TTACACTACA
* * *
87695762 AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTTACAAATCAAAGGTATTTCA
1 AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAAGGTATTTCG
87695827 ATAATTTTACAAATCG
66 ATAATTTTACAAATCG
* * *
87695843 AGGGTATTTTAGTAATTTCAC-AATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCG
1 AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAAGGTATTTCG
*
87695907 TTAATTTTAC-AATCG
66 ATAATTTTACAAATCG
* * *
87695922 AGGGTATTTTGGTAATTTTACAAATCGGGGGTATTTGGGTAATTTTACAAATCGAAGGTGTTTCG
1 AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAAGGTATTTCG
* *
87695987 GTAATTTCACAAATCTG
66 ATAATTTTACAAATC-G
*
87696004 -GGGTATTTCGGTAATTT
1 AGGGTATTTTGGTAATTT
87696021 ACCTTTATTA
Statistics
Matches: 159, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
79 24 0.15
80 95 0.60
81 39 0.25
82 1 0.01
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (81 bp):
AGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAAGGTATTTCG
ATAATTTTACAAATCG
Found at i:87696373 original size:28 final size:28
Alignment explanation
Indices: 87696337--87696428 Score: 148
Period size: 28 Copynumber: 3.3 Consensus size: 28
87696327 TGGCCACTTT
*
87696337 AGGCCCAATCTCGTTCACATGGCCCAAC
1 AGGCCCAATCTCGTTCACATGGCCCATC
87696365 AGGCCCAATCTCGTTCACATGGCCCATC
1 AGGCCCAATCTCGTTCACATGGCCCATC
* * *
87696393 AGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCTCGTTCACATGGCCCATC
87696421 AGGCCCAA
1 AGGCCCAA
87696429 CTAGTTCCCA
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 60 1.00
ACGTcount: A:0.26, C:0.38, G:0.17, T:0.18
Consensus pattern (28 bp):
AGGCCCAATCTCGTTCACATGGCCCATC
Found at i:87698076 original size:47 final size:47
Alignment explanation
Indices: 87698013--87698117 Score: 183
Period size: 47 Copynumber: 2.2 Consensus size: 47
87698003 CCCTTCGGGA
* * *
87698013 CTTATCACATTTATACACTTTCACATTCATCATATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
87698060 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
87698107 CTTATCACATA
1 CTTATCACATA
87698118 ATTAATACTA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 55 1.00
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.35
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
Found at i:87702567 original size:40 final size:40
Alignment explanation
Indices: 87702523--87702793 Score: 481
Period size: 40 Copynumber: 6.8 Consensus size: 40
87702513 ACACATCACT
* *
87702523 GGCACGAATGCCCTTCGGGACTTAGCCCGGATATAACATC
1 GGCACGAATGCCCTTCGGGATTTAGCCCGGATATAACACC
*
87702563 GGCACGAATACCCTTCGGGATTTAGCCC-GATATAACACC
1 GGCACGAATGCCCTTCGGGATTTAGCCCGGATATAACACC
87702602 GGCACGAATGCCCTTCGGGATTTAGCCCGGATATAACACC
1 GGCACGAATGCCCTTCGGGATTTAGCCCGGATATAACACC
87702642 GGCACGAATGCCCTTCGGGATTTAGCCCGGATATAACACC
1 GGCACGAATGCCCTTCGGGATTTAGCCCGGATATAACACC
*
87702682 GGCACGAATGCCCTTCGGGACTTAGCCCGGATATAACACC
1 GGCACGAATGCCCTTCGGGATTTAGCCCGGATATAACACC
*
87702722 GGCACGAATGCCCTTCGGGATTTAGCCCGGATATAACACT
1 GGCACGAATGCCCTTCGGGATTTAGCCCGGATATAACACC
*
87702762 GGCACGAATGCCCTTCGGGACTTAGCCCGGAT
1 GGCACGAATGCCCTTCGGGATTTAGCCCGGAT
87702794 CATCGTCGAG
Statistics
Matches: 222, Mismatches: 8, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
39 37 0.17
40 185 0.83
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (40 bp):
GGCACGAATGCCCTTCGGGATTTAGCCCGGATATAACACC
Found at i:87702920 original size:38 final size:38
Alignment explanation
Indices: 87702834--87702925 Score: 112
Period size: 38 Copynumber: 2.4 Consensus size: 38
87702824 CTCTATATGA
* * * **
87702834 AGCCAGTGGGTCTTAATCCGGACATAATCTCTGTACAT
1 AGCCAGCGGGTCTTTACCCGGACATAATCTCTACACAT
* *
87702872 AGCCATCGGGTCTTTACCCGGACATAATCTCTACATAT
1 AGCCAGCGGGTCTTTACCCGGACATAATCTCTACACAT
*
87702910 AGTCAGCGGGTCTTTA
1 AGCCAGCGGGTCTTTA
87702926 AACTCGGATT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 45 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (38 bp):
AGCCAGCGGGTCTTTACCCGGACATAATCTCTACACAT
Found at i:87704927 original size:47 final size:47
Alignment explanation
Indices: 87704864--87704968 Score: 192
Period size: 47 Copynumber: 2.2 Consensus size: 47
87704854 CCCTTCGGGA
* *
87704864 CTTATCACATTTATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
87704911 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
87704958 CTTATCACATA
1 CTTATCACATA
87704969 ATTAATACTA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
Found at i:87715699 original size:33 final size:34
Alignment explanation
Indices: 87715622--87715702 Score: 87
Period size: 33 Copynumber: 2.4 Consensus size: 34
87715612 TATGGGTCAT
*
87715622 ACTGTTATCTGAATAAGGGGCCAAGGCCCAGTTT
1 ACTGTTATCTGAATAAGGGGCCAAGGCCCAGTTC
* * *
87715656 AATGTAATCTGAA-AA-GGGCTC-TGGCCCAGTATC
1 ACTGTTATCTGAATAAGGGGC-CAAGGCCCAGT-TC
87715689 ACTGTTATCTGAAT
1 ACTGTTATCTGAAT
87715703 GGGCTTAGGC
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
32 12 0.32
33 15 0.39
34 11 0.29
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.28
Consensus pattern (34 bp):
ACTGTTATCTGAATAAGGGGCCAAGGCCCAGTTC
Found at i:87723228 original size:26 final size:26
Alignment explanation
Indices: 87723198--87723250 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
87723188 TTTATAGTTT
87723198 TACCCCTAGGAGTTAAATT-ACCGAAA
1 TACCCCTAGG-GTTAAATTGACCGAAA
*
87723224 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGTTAAATTGACCGAAA
87723250 T
1 T
87723251 GCATGTTTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGGTTAAATTGACCGAAA
Found at i:87728018 original size:3 final size:3
Alignment explanation
Indices: 87728012--87728040 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
87728002 TACTACTATT
87728012 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
87728041 TATTATTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:87728045 original size:3 final size:3
Alignment explanation
Indices: 87728039--87728075 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
87728029 AATAATAATA
87728039 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
87728076 AGCTCCTCAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:87728888 original size:29 final size:31
Alignment explanation
Indices: 87728841--87728919 Score: 90
Period size: 29 Copynumber: 2.6 Consensus size: 31
87728831 GTTAGATTAG
* * *
87728841 ATCAAAATTTCATGCATAAAATTGCACA-AAT
1 ATCAAAA-TTCATGTATAAAACTACACATAAT
*
87728872 -TCAAAATTCATGTATAAAACTACACATTAT
1 ATCAAAATTCATGTATAAAACTACACATAAT
*
87728902 ACCAAAATTCATGTATAA
1 ATCAAAATTCATGTATAA
87728920 TTTTGAGATT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
29 17 0.41
30 8 0.20
31 16 0.39
ACGTcount: A:0.48, C:0.16, G:0.05, T:0.30
Consensus pattern (31 bp):
ATCAAAATTCATGTATAAAACTACACATAAT
Found at i:87735387 original size:27 final size:27
Alignment explanation
Indices: 87735320--87735397 Score: 68
Period size: 27 Copynumber: 2.9 Consensus size: 27
87735310 GAAAAAAACC
* * *
87735320 TTTGTGGCGTACTCTGAAAGAATAGTC
1 TTTGTGGCGAACTCTAAAAGAATAGTA
* * *
87735347 TATGTAGC-ATACTCTAAAATAATAGTA
1 TTTGTGGCGA-ACTCTAAAAGAATAGTA
**
87735374 TTTGTGGCGAACTCGGAAAGAATA
1 TTTGTGGCGAACTCTAAAAGAATA
87735398 ACCTTTGTGG
Statistics
Matches: 38, Mismatches: 11, Indels: 4
0.72 0.21 0.08
Matches are distributed among these distances:
27 37 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.31
Consensus pattern (27 bp):
TTTGTGGCGAACTCTAAAAGAATAGTA
Found at i:87735912 original size:22 final size:22
Alignment explanation
Indices: 87735887--87735930 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
87735877 TAGTCATATA
87735887 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
87735909 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
87735931 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:87735968 original size:13 final size:14
Alignment explanation
Indices: 87735950--87735991 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
87735940 TTTCAATTCT
87735950 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
87735963 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
87735978 ATTTTAAATAATAT
1 ATTTT-AATAATAT
87735992 TATTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:87735976 original size:16 final size:16
Alignment explanation
Indices: 87735954--87735990 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
87735944 AATTCTATTT
87735954 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
87735971 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
87735986 TAATA
1 TAATA
87735991 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:87736043 original size:15 final size:15
Alignment explanation
Indices: 87736023--87736074 Score: 59
Period size: 15 Copynumber: 3.3 Consensus size: 15
87736013 ATTCAATATT
87736023 AATATTTTAATAATA
1 AATATTTTAATAATA
*
87736038 AATATTATTACAATTATA
1 AATATT-TT--AATAATA
*
87736056 AATATATTAATAATA
1 AATATTTTAATAATA
87736071 AATA
1 AATA
87736075 ATTTGTAGTA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
15 16 0.52
16 2 0.06
17 2 0.06
18 11 0.35
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:87736556 original size:14 final size:14
Alignment explanation
Indices: 87736537--87736575 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
87736527 CTAGAAAAGT
87736537 AAATCATTTTCCAG
1 AAATCATTTTCCAG
**
87736551 AAATCATTTTCTGG
1 AAATCATTTTCCAG
*
87736565 AAGTCATTTTC
1 AAATCATTTTC
87736576 AGTGAAACAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.41
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:87737050 original size:20 final size:21
Alignment explanation
Indices: 87737025--87737063 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
87737015 TCCTTAAAAC
*
87737025 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCATGTGGA
87737045 AGGGCAACACGCCCATGTG
1 AGGGCAACACGCCCATGTG
87737064 ACCAACTCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.23, C:0.31, G:0.36, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCATGTGGA
Found at i:87738292 original size:46 final size:46
Alignment explanation
Indices: 87738149--87738365 Score: 169
Period size: 46 Copynumber: 4.6 Consensus size: 46
87738139 TTGCTAATGC
* * * * *
87738149 CATGTACC-AGACATGGTCTTACACTAGCTCTTGCATATCTGTGCCAATG
1 CATGT-CCTAGACATGGTCTTACACT-G-GCTTACATCTC-GAGCCGATG
*
87738198 CCATGTCCTAGACATGGTCTTACACTGAC--ACATCTCGTAGCCGATG
1 -CATGTCCTAGACATGGTCTTACACTGGCTTACATCTCG-AGCCGATG
*
87738244 CATGTCCTAGACAT-GTCTTACACTGGCTTACGTCTCGAGGCCGATG
1 CATGTCCTAGACATGGTCTTACACTGGCTTACATCTCGA-GCCGATG
* * * **
87738290 CATGTCCCAGACAT-GCCTTACACTAGCATT-CATCTTAATGCCGATG
1 CATGTCCTAGACATGGTCTTACACTGGC-TTACATCTCGA-GCCGATG
*
87738336 CCATGT-CTCAAACATGGTCTTACACTGGCT
1 -CATGTCCT-AGACATGGTCTTACACTGGCT
87738366 CATACCAATG
Statistics
Matches: 140, Mismatches: 18, Indels: 21
0.78 0.10 0.12
Matches are distributed among these distances:
44 12 0.09
45 16 0.11
46 62 0.44
47 13 0.09
48 12 0.09
49 3 0.02
50 22 0.16
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
CATGTCCTAGACATGGTCTTACACTGGCTTACATCTCGAGCCGATG
Found at i:87740588 original size:27 final size:28
Alignment explanation
Indices: 87740479--87740601 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
87740469 GAGATTGGCG
* * * *
87740479 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
87740508 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
87740536 CTAAGTGTGCGAGTTTGATTACATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
87740564 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
87740591 CTGAGTGTGCG
1 CTAAGTGTGCG
87740602 GACTTAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.26
28 49 0.56
29 15 0.17
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:87740612 original size:27 final size:27
Alignment explanation
Indices: 87740504--87740614 Score: 134
Period size: 28 Copynumber: 4.0 Consensus size: 27
87740494 TAAATTGTAC
*
87740504 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGATTATAT
* *
87740532 AGCACTAAGTGTGCGAGTTTGATTACAT
1 AGCACTAAGTGTGCGA-CTTGATTATAT
*
87740560 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGATTATAT
* *
87740587 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGATTATAT
87740614 A
1 A
87740615 CTTTTGAATC
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
27 29 0.38
28 47 0.62
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.32
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGATTATAT
Found at i:87760637 original size:40 final size:40
Alignment explanation
Indices: 87760582--87760773 Score: 287
Period size: 40 Copynumber: 4.8 Consensus size: 40
87760572 CGGATGATAA
87760582 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
87760622 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
* * * *
87760662 CCAGGCTAAGTCCCGAAGGCATTTGTTCGAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
* * *
87760702 CCGGGCTAAGTCCGGAAGGCATTGGTGCGAGTTACT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-T
* *
87760742 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
87760774 AGCTATATCC
Statistics
Matches: 136, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
39 1 0.01
40 135 0.99
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
Found at i:87763254 original size:17 final size:16
Alignment explanation
Indices: 87763229--87763262 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
87763219 ATATGCTTAA
*
87763229 GTGTTATGTGATTATAT
1 GTGTAATGTGA-TATAT
87763246 GTGTAATGTGATATAT
1 GTGTAATGTGATATAT
87763262 G
1 G
87763263 CTTAAAAGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.47
Consensus pattern (16 bp):
GTGTAATGTGATATAT
Found at i:87763267 original size:39 final size:39
Alignment explanation
Indices: 87763129--87763265 Score: 186
Period size: 39 Copynumber: 3.5 Consensus size: 39
87763119 ATGTTTCTGA
87763129 GTATTGTGATATATATGCTTGAATATTATGTGATTATATGT
1 GTATTGTG--ATATATGCTTGAATATTATGTGATTATATGT
* * * *
87763170 GTATTGTGATATATGTTTGAACATTATGTAATTATATGA
1 GTATTGTGATATATGCTTGAATATTATGTGATTATATGT
*
87763209 GTATTGTGATATATGCTT-AAGTGTTATGTGATTATATGT
1 GTATTGTGATATATGCTTGAA-TATTATGTGATTATATGT
*
87763248 GTAATGTGATATATGCTT
1 GTATTGTGATATATGCTT
87763266 AAAAGTGAAT
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
38 2 0.02
39 75 0.88
41 8 0.09
ACGTcount: A:0.29, C:0.03, G:0.20, T:0.47
Consensus pattern (39 bp):
GTATTGTGATATATGCTTGAATATTATGTGATTATATGT
Found at i:87773228 original size:93 final size:93
Alignment explanation
Indices: 87773116--87773288 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
87773106 CGCCCATAAG
* * * *
87773116 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTTGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAATGAACTCGGACTCAACTCA
87773181 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
*
87773209 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAATGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAATGAACTCGGACTCAACTCA
* *
87773274 ATGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
87773289 CAAATATCCC
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAATGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:87773284 original size:46 final size:46
Alignment explanation
Indices: 87773117--87773284 Score: 185
Period size: 46 Copynumber: 3.6 Consensus size: 46
87773107 GCCCATAAGC
* * *
87773117 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAAT
* * * * * ** *
87773163 GAACTTGGACTCAACTCAACGAGCTCGGATGCCTAG-TTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACG-CTCGCATCCAT-AAAT
*
87773210 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAAT
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAAT
* *
87773256 GAACTCGGACTCAACTCAATGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGCTCGGA
87773285 TGCCCAAATA
Statistics
Matches: 98, Mismatches: 21, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
46 64 0.65
47 34 0.35
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAAT
Found at i:87775229 original size:29 final size:29
Alignment explanation
Indices: 87775192--87775275 Score: 93
Period size: 29 Copynumber: 2.9 Consensus size: 29
87775182 GATAACAAGA
*
87775192 AAACC-GAATAAAGAAATCCAAGATAGAG
1 AAACCGGAATAAAGAAATCCAAGATAAAG
87775220 AAACCGGAATAAAGAAATCC-AGAATAAAG
1 AAACCGGAATAAAGAAATCCAAG-ATAAAG
* *
87775249 AGATCCAGG-ATAAAGAAACCCAAGATA
1 A-AACC-GGAATAAAGAAATCCAAGATA
87775276 CGATACTATG
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
28 7 0.15
29 20 0.42
30 17 0.35
31 4 0.08
ACGTcount: A:0.56, C:0.15, G:0.18, T:0.11
Consensus pattern (29 bp):
AAACCGGAATAAAGAAATCCAAGATAAAG
Found at i:87775246 original size:15 final size:15
Alignment explanation
Indices: 87775188--87775266 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
87775178 CAAAGATAAC
*
87775188 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
87775202 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
87775217 GAGAAA-CCGGAATA
1 AAGAAATCCAGAATA
87775231 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
87775246 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
87775261 AAGAAA
1 AAGAAA
87775267 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.13, G:0.19, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:87775275 original size:15 final size:15
Alignment explanation
Indices: 87775199--87775275 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
87775189 AGAAAACCGA
87775199 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
87775214 ATAGAGAAA-CC-GG
1 ATAAAGAAATCCAAG
87775227 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
87775242 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
87775258 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
87775273 ATA
1 ATA
87775276 CGATACTATG
Statistics
Matches: 50, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 38 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.14, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:87778272 original size:47 final size:47
Alignment explanation
Indices: 87778189--87778322 Score: 146
Period size: 46 Copynumber: 2.9 Consensus size: 47
87778179 TGTAACCCGC
* * * *
87778189 CCATAAGCGAACTCGGACTCAAATCAATGAGCTCGGATGCCTAG-TT
1 CCATAAACGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGCAT
* ** * * *
87778235 GCATCTCACGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCGCAT
1 CCAT-AAACGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGCAT
*
87778282 CCATAAATGAACTCGGACTCAACTCAATGAGTTCGGATGCC
1 CCATAAACGAACTCGGACTCAACTCAATGAGTTCGGATGCC
87778323 CAAATATCCC
Statistics
Matches: 69, Mismatches: 16, Indels: 5
0.77 0.18 0.06
Matches are distributed among these distances:
46 36 0.52
47 33 0.48
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (47 bp):
CCATAAACGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGCAT
Found at i:87780881 original size:46 final size:46
Alignment explanation
Indices: 87780831--87781001 Score: 197
Period size: 46 Copynumber: 3.7 Consensus size: 46
87780821 TGGTTGAGCA
87780831 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* ** *
87780877 TCCGAACTCGTTGAGTTGAGTCCGAGTT--CGTA-AAATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
87780922 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
87780970 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
87781002 GAGGGGCGGG
Statistics
Matches: 104, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 1 0.01
46 57 0.55
47 28 0.27
48 1 0.01
49 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:87780987 original size:93 final size:93
Alignment explanation
Indices: 87780828--87780998 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
87780818 GGATGGTTGA
* *
87780828 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
87780893 TGAGTCCGAGTTCGTAAAATGTAACTAG
66 TGAGTCCGAGTTCGTAAAATGTAACTAG
*
87780921 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
87780986 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
87780999 ACTGAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTAAAATGTAACTAG
Found at i:87785261 original size:40 final size:40
Alignment explanation
Indices: 87785160--87785350 Score: 260
Period size: 40 Copynumber: 4.8 Consensus size: 40
87785150 TGGATGATAA
* * * * **
87785160 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
87785200 CGGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
87785239 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
87785279 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
87785319 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
87785351 AGCTATATCC
Statistics
Matches: 136, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 32 0.24
40 102 0.75
41 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:87788661 original size:10 final size:10
Alignment explanation
Indices: 87788646--87788681 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
87788636 TAACATATTG
87788646 AATTTTAATT
1 AATTTTAATT
87788656 AATTTTAATT
1 AATTTTAATT
*
87788666 AATTTTGATT
1 AATTTTAATT
*
87788676 TATTTT
1 AATTTT
87788682 CGACAGATTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (10 bp):
AATTTTAATT
Found at i:87792800 original size:19 final size:16
Alignment explanation
Indices: 87792742--87792792 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
87792732 TTGCTTTATG
87792742 TAATTAATGTAAAATAA
1 TAATTAAT-TAAAATAA
*
87792759 T-ATTATTTAAAATAA
1 TAATTAATTAAAATAA
87792774 TAATTAATTAAAATAA
1 TAATTAATTAAAATAA
87792790 TAA
1 TAA
87792793 ACTCTAATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
15 9 0.29
16 21 0.68
17 1 0.03
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (16 bp):
TAATTAATTAAAATAA
Found at i:87793108 original size:17 final size:17
Alignment explanation
Indices: 87793073--87793118 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 17
87793063 ATTTTTATAT
*
87793073 AATATAGATTATGAAAA
1 AATATAGATTATAAAAA
*
87793090 AATATAGATT-TAAATA
1 AATATAGATTATAAAAA
87793106 AA-ATA-ATTATAAA
1 AATATAGATTATAAA
87793119 TTATAAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
14 3 0.12
15 7 0.27
16 6 0.23
17 10 0.38
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.33
Consensus pattern (17 bp):
AATATAGATTATAAAAA
Found at i:87793764 original size:31 final size:31
Alignment explanation
Indices: 87793722--87793781 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
87793712 AAATTTTAAA
* *
87793722 TTAACAATAATAA-AATTATATTTTAATTTTT
1 TTAAAAATAATAATAATT-TAATTTAATTTTT
87793753 TTAAAAATAATAATAATTTAATTTAATTT
1 TTAAAAATAATAATAATTTAATTTAATTT
87793782 AATTTAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 22 0.85
32 4 0.15
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (31 bp):
TTAAAAATAATAATAATTTAATTTAATTTTT
Found at i:87793776 original size:5 final size:5
Alignment explanation
Indices: 87793766--87793800 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
87793756 AAAATAATAA
87793766 TAATT TAATT TAATT TAATT TAATT TAATT TAATT
1 TAATT TAATT TAATT TAATT TAATT TAATT TAATT
87793801 CCCTAAAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TAATT
Found at i:87793817 original size:8 final size:8
Alignment explanation
Indices: 87793804--87793844 Score: 59
Period size: 8 Copynumber: 5.2 Consensus size: 8
87793794 TTTAATTCCC
87793804 TAAAATTA
1 TAAAATTA
87793812 TAAAA-TA
1 TAAAATTA
87793819 T-AAATTA
1 TAAAATTA
87793826 TTAAAATTA
1 -TAAAATTA
87793835 TAAAATTA
1 TAAAATTA
87793843 TA
1 TA
87793845 TTTTTACTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
6 3 0.10
7 5 0.17
8 16 0.53
9 6 0.20
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (8 bp):
TAAAATTA
Found at i:87793825 original size:14 final size:16
Alignment explanation
Indices: 87793804--87793844 Score: 59
Period size: 14 Copynumber: 2.6 Consensus size: 16
87793794 TTTAATTCCC
87793804 TAAAATTATAAAA-TA
1 TAAAATTATAAAATTA
87793819 T-AAATTATTAAAATTA
1 TAAAATTA-TAAAATTA
87793835 TAAAATTATA
1 TAAAATTATA
87793845 TTTTTACTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.26
15 6 0.26
16 5 0.22
17 6 0.26
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
TAAAATTATAAAATTA
Found at i:87793897 original size:21 final size:21
Alignment explanation
Indices: 87793873--87793914 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
87793863 ATATATAATT
* *
87793873 TAATTTCAATTCTTTCAAAAA
1 TAATTTCAATCCTTTAAAAAA
87793894 TAATTTCAATCCTTTAAAAAA
1 TAATTTCAATCCTTTAAAAAA
87793915 AAACTTTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.45, C:0.14, G:0.00, T:0.40
Consensus pattern (21 bp):
TAATTTCAATCCTTTAAAAAA
Found at i:87797417 original size:17 final size:17
Alignment explanation
Indices: 87797385--87797418 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
87797375 AATTTAAAAC
* *
87797385 TATTTTTTATATTTTTA
1 TATTTTTTAAAATTTTA
87797402 TATTTTTTAAAATTTTA
1 TATTTTTTAAAATTTTA
87797419 AAAAATCAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TATTTTTTAAAATTTTA
Found at i:87799049 original size:12 final size:12
Alignment explanation
Indices: 87799025--87799058 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
87799015 AAATTACAAA
87799025 TAAATTCAAATAT
1 TAAATT-AAATAT
87799038 TAAATTAAATAT
1 TAAATTAAATAT
*
87799050 AAAATTAAA
1 TAAATTAAA
87799059 CACAATTACT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 14 0.70
13 6 0.30
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (12 bp):
TAAATTAAATAT
Found at i:87800855 original size:15 final size:14
Alignment explanation
Indices: 87800835--87800880 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 14
87800825 ACTTTTCTCT
87800835 TTCTTCTTGTCTTTC
1 TTCTTCTT-TCTTTC
87800850 TTCTTC-TTCTTT-
1 TTCTTCTTTCTTTC
87800862 TTCTTCTTATCTTTAC
1 TTCTTCTT-TCTTT-C
87800878 TTC
1 TTC
87800881 GCATCTGCCC
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
12 6 0.22
13 6 0.22
14 6 0.22
15 6 0.22
16 3 0.11
ACGTcount: A:0.04, C:0.26, G:0.02, T:0.67
Consensus pattern (14 bp):
TTCTTCTTTCTTTC
Found at i:87802647 original size:17 final size:16
Alignment explanation
Indices: 87802621--87802656 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
87802611 CGTGTCAAGT
*
87802621 TAACTGGCCACGTCAGC
1 TAACTAGCCACGTCA-C
87802638 TAACTAGCCACGTCAC
1 TAACTAGCCACGTCAC
87802654 TAA
1 TAA
87802657 TCTTGTTAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.31, C:0.33, G:0.17, T:0.19
Consensus pattern (16 bp):
TAACTAGCCACGTCAC
Found at i:87803423 original size:18 final size:17
Alignment explanation
Indices: 87803390--87803444 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 17
87803380 TAAATTTGTG
87803390 AAAAATATAAAAAATTAAT
1 AAAAATAT--AAAATTAAT
**
87803409 GGAAATCATAAAATTAAT
1 AAAAAT-ATAAAATTAAT
*
87803427 AAAAATATAAAATAAAT
1 AAAAATATAAAATTAAT
87803444 A
1 A
87803445 TTTTTAAATA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
17 11 0.37
18 13 0.43
19 4 0.13
20 2 0.07
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.25
Consensus pattern (17 bp):
AAAAATATAAAATTAAT
Found at i:87803627 original size:9 final size:9
Alignment explanation
Indices: 87803517--87803628 Score: 58
Period size: 9 Copynumber: 12.9 Consensus size: 9
87803507 AAAAAATTAC
87803517 ATAAAAATT
1 ATAAAAATT
*
87803526 ATAGAAATT
1 ATAAAAATT
87803535 AT--AAA-T
1 ATAAAAATT
*
87803541 ATACAAAA-C
1 ATA-AAAATT
*
87803550 AT--AAATA
1 ATAAAAATT
*
87803557 ATAAATATT
1 ATAAAAATT
*
87803566 GTAAATAATT
1 ATAAA-AATT
87803576 AT-AAAATT
1 ATAAAAATT
*
87803584 ATAAACATT
1 ATAAAAATT
* *
87803593 TTGGAAAATT
1 AT-AAAAATT
*
87803603 ATGAAAATT
1 ATAAAAATT
*
87803612 ACAAAAATT
1 ATAAAAATT
87803621 ATAAAAAT
1 ATAAAAAT
87803629 ATTCTTTTTC
Statistics
Matches: 78, Mismatches: 16, Indels: 18
0.70 0.14 0.16
Matches are distributed among these distances:
6 6 0.08
7 5 0.06
8 6 0.08
9 51 0.65
10 10 0.13
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.32
Consensus pattern (9 bp):
ATAAAAATT
Found at i:87811401 original size:32 final size:32
Alignment explanation
Indices: 87811359--87811420 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
87811349 TTTGGCCTTG
* *
87811359 TTTTGTGGATGTTTTGGTTGCCTACGTATGTC
1 TTTTATGGATGTTTTGGTTACCTACGTATGTC
*
87811391 TTTTATGGATGTTTTGGTTACCTATGTATG
1 TTTTATGGATGTTTTGGTTACCTACGTATG
87811421 CCATGATTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.13, C:0.10, G:0.26, T:0.52
Consensus pattern (32 bp):
TTTTATGGATGTTTTGGTTACCTACGTATGTC
Found at i:87813021 original size:61 final size:61
Alignment explanation
Indices: 87812926--87813048 Score: 237
Period size: 61 Copynumber: 2.0 Consensus size: 61
87812916 AGATGGGTTG
*
87812926 AACGAGGATATCAGATTATAAGTAGGGATCCTAGAGTTGAAAGAATTTGTGGTGCTAGCCA
1 AACGAGGATATCAGATTATAAGTAGGGATCCTAGAGTTGAAAGAATTTGTAGTGCTAGCCA
87812987 AACGAGGATATCAGATTATAAGTAGGGATCCTAGAGTTGAAAGAATTTGTAGTGCTAGCCA
1 AACGAGGATATCAGATTATAAGTAGGGATCCTAGAGTTGAAAGAATTTGTAGTGCTAGCCA
87813048 A
1 A
87813049 CAAAGCTTGC
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.36, C:0.11, G:0.27, T:0.26
Consensus pattern (61 bp):
AACGAGGATATCAGATTATAAGTAGGGATCCTAGAGTTGAAAGAATTTGTAGTGCTAGCCA
Found at i:87825853 original size:18 final size:17
Alignment explanation
Indices: 87825827--87825860 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
87825817 ATGAAATAAA
*
87825827 TAAATAAATAAATAAAAT
1 TAAAGAAAT-AATAAAAT
87825845 TAAAGAAATAATAAAA
1 TAAAGAAATAATAAAA
87825861 GTTTTTACAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24
Consensus pattern (17 bp):
TAAAGAAATAATAAAAT
Found at i:87827330 original size:40 final size:40
Alignment explanation
Indices: 87827284--87827470 Score: 213
Period size: 39 Copynumber: 4.7 Consensus size: 40
87827274 ACTACTTGCT
87827284 CAAATGCCTTCGGGACTT-GACCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAG-CCCGGTTATAGTAACTCGCA
*
87827324 CAAATGCCTTCAGGACTTAGCCCGGTTCA-A-TAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTT-ATAGTAACTCGCA
* * * *
87827363 CCAATGCCTTCGGGACTTAGCCCGGATATAATAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * * * *
87827403 CAATTGCCTTCGGG-TTTAGCCCAG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
87827442 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
87827471 CATCCGAATA
Statistics
Matches: 122, Mismatches: 18, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
38 2 0.02
39 63 0.52
40 54 0.44
41 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:87827387 original size:79 final size:79
Alignment explanation
Indices: 87827284--87827470 Score: 227
Period size: 79 Copynumber: 2.4 Consensus size: 79
87827274 ACTACTTGCT
* *
87827284 CAAATGCCTTCGGGACTT-GACCCGGTTATAGTAACTCGCACAAATGCCTTCAGGACTTAGCCC-
1 CAAATGCCTTCGGGACTTAG-CCCGGTTATAATAACTCACACAAATGCCTTC-GGACTTAGCCCA
* *
87827347 G-GTTCAATAACTCGCA
64 GAATT-AATAACTAGCA
* * * **
87827363 CCAATGCCTTCGGGACTTAGCCCGGATATAATAACTCACACAATTGCCTTCGGGTTTAGCCCAGA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCACACAAATGCCTTCGGACTTAGCCCAGA
* *
87827428 ATTAGTCACTAGCA
66 ATTAATAACTAGCA
87827442 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
87827471 CATCCGAATA
Statistics
Matches: 92, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 9 0.10
79 80 0.87
80 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAATAACTCACACAAATGCCTTCGGACTTAGCCCAGA
ATTAATAACTAGCA
Found at i:87841803 original size:18 final size:17
Alignment explanation
Indices: 87841777--87841810 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
87841767 ATGAAATAAA
*
87841777 TAAATAAATAAATAAAAT
1 TAAAGAAAT-AATAAAAT
87841795 TAAAGAAATAATAAAA
1 TAAAGAAATAATAAAA
87841811 GTTTTTACAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24
Consensus pattern (17 bp):
TAAAGAAATAATAAAAT
Found at i:87843298 original size:39 final size:40
Alignment explanation
Indices: 87843233--87843418 Score: 213
Period size: 39 Copynumber: 4.7 Consensus size: 40
87843223 ACTACTTGCT
87843233 CAAATGCCTTCGGGACTT-GACCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAG-CCCGGTTATAGTAACTCGCA
87843273 CAAATGCCTTC-GGACTTAGCCCGGTTCA-A-TAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTT-ATAGTAACTCGCA
* * * *
87843311 CCAATGCCTTCGGGACTTAGCCCGGATATAATAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * * * *
87843351 CAATTGCCTTCGGG-TTTAGCCCAG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
87843390 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
87843419 CATCCGAATA
Statistics
Matches: 122, Mismatches: 16, Indels: 16
0.79 0.10 0.10
Matches are distributed among these distances:
38 21 0.17
39 58 0.48
40 42 0.34
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:87851890 original size:30 final size:30
Alignment explanation
Indices: 87851854--87851912 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
87851844 TACAATTTCA
* *
87851854 TTTTATTTTTATTTTAATTTGGCCCTAATC
1 TTTTATTTTTATTTCAATTTAGCCCTAATC
* *
87851884 TTTTATTTTTGTTTCAATTTAGTCCTAAT
1 TTTTATTTTTATTTCAATTTAGCCCTAAT
87851913 GGCCATTATA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.20, C:0.12, G:0.07, T:0.61
Consensus pattern (30 bp):
TTTTATTTTTATTTCAATTTAGCCCTAATC
Found at i:87852202 original size:21 final size:21
Alignment explanation
Indices: 87852178--87852255 Score: 75
Period size: 21 Copynumber: 3.4 Consensus size: 21
87852168 TTTACCATAT
87852178 TATTTATATTATCATATATTC
1 TATTTATATTATCATATATTC
* *
87852199 TATTTATAAATTTTATTATATATCTTT
1 TATTTAT--A--TTATCATATA--TTC
87852226 TATTATATATTATCATATATTC
1 TATT-TATATTATCATATATTC
87852248 TATTTATA
1 TATTTATA
87852256 AATTTTATTA
Statistics
Matches: 46, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
21 11 0.24
22 6 0.13
23 1 0.02
24 9 0.20
25 9 0.20
26 1 0.02
27 6 0.13
28 3 0.07
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (21 bp):
TATTTATATTATCATATATTC
Found at i:87852214 original size:25 final size:25
Alignment explanation
Indices: 87852186--87852270 Score: 111
Period size: 25 Copynumber: 3.4 Consensus size: 25
87852176 ATTATTTATA
87852186 TTATCATATATTCTATTTATAAATT
1 TTATCATATATTCTATTTATAAATT
* * *
87852211 TTATTATATA-TCT-TTTATTATATA
1 TTATCATATATTCTATTTA-TAAATT
87852235 TTATCATATATTCTATTTATAAATT
1 TTATCATATATTCTATTTATAAATT
*
87852260 TTATTATATAT
1 TTATCATATAT
87852271 ATTAACCCTT
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
23 4 0.08
24 16 0.32
25 26 0.52
26 4 0.08
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (25 bp):
TTATCATATATTCTATTTATAAATT
Found at i:87852226 original size:14 final size:14
Alignment explanation
Indices: 87852209--87852235 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
87852199 TATTTATAAA
87852209 TTTTATTATATATC
1 TTTTATTATATATC
87852223 TTTTATTATATAT
1 TTTTATTATATAT
87852236 TATCATATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.67
Consensus pattern (14 bp):
TTTTATTATATATC
Found at i:87852238 original size:49 final size:48
Alignment explanation
Indices: 87852177--87852270 Score: 179
Period size: 49 Copynumber: 1.9 Consensus size: 48
87852167 ATTTACCATA
87852177 TTATTTATATTATCATATATTCTATTTATAAATTTTATTATATATCTT
1 TTATTTATATTATCATATATTCTATTTATAAATTTTATTATATATCTT
87852225 TTATTATATATTATCATATATTCTATTTATAAATTTTATTATATAT
1 TTATT-TATATTATCATATATTCTATTTATAAATTTTATTATATAT
87852271 ATTAACCCTT
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
48 5 0.11
49 40 0.89
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (48 bp):
TTATTTATATTATCATATATTCTATTTATAAATTTTATTATATATCTT
Found at i:87852860 original size:71 final size:69
Alignment explanation
Indices: 87852746--87852901 Score: 203
Period size: 71 Copynumber: 2.3 Consensus size: 69
87852736 GTTATTTTAA
* * *
87852746 GTTATATTTGCAT-AAA-ATATTGTTATATATTATGTAATTTATATTGTTAT-ATTCATTGTTTT
1 GTTATATTTGCATGAAATATATTATTATATATTATGTAATCTATATTGTTATGA-TAATTGTTTT
87852808 CTAT-
65 CTATG
*
87852812 GTTATATTTTGCATGAAATATTATTATGTATGTATTATGTAATCTATATTGTTATGATAATTGTT
1 GTTATA-TTTGCATGAAATA-TATTAT-TATATATTATGTAATCTATATTGTTATGATAATTGTT
87852877 TTCTATG
63 TTCTATG
*
87852884 GTTATATCTGCATGAAAT
1 GTTATATTTGCATGAAAT
87852902 GATGATGCAT
Statistics
Matches: 78, Mismatches: 5, Indels: 9
0.85 0.05 0.10
Matches are distributed among these distances:
66 6 0.08
67 7 0.09
68 3 0.04
69 1 0.01
70 5 0.06
71 49 0.63
72 7 0.09
ACGTcount: A:0.30, C:0.05, G:0.12, T:0.53
Consensus pattern (69 bp):
GTTATATTTGCATGAAATATATTATTATATATTATGTAATCTATATTGTTATGATAATTGTTTTC
TATG
Found at i:87864384 original size:44 final size:44
Alignment explanation
Indices: 87864334--87864625 Score: 392
Period size: 44 Copynumber: 6.7 Consensus size: 44
87864324 TCACCGATAG
* *
87864334 CAGATTTGGCGTCTCTATATTGTCAGAGAGCAGATCAAAGATAA
1 CAGATTTGGCGTCTCTATATTGTCAGAGAGCAGATCGAAGATGA
* *
87864378 CAGATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGA
1 CAGATTTGGCGTCTCTATATTGTCAGAGAGCAGATCGAAGATGA
* **
87864422 TAGATTTGGC--CTCTATATTGAAAGAGAGCAGATCGAAGATGA
1 CAGATTTGGCGTCTCTATATTGTCAGAGAGCAGATCGAAGATGA
*
87864464 CAGATTTGGTGTCTCTATATTGAT-AGAGAGCAGATCGAAGATGA
1 CAGATTTGGCGTCTCTATATTG-TCAGAGAGCAGATCGAAGATGA
* * *
87864508 CAGATTTGGCGTCTCCATATTGTTAGAGAGCAGATCGAAGATAA
1 CAGATTTGGCGTCTCTATATTGTCAGAGAGCAGATCGAAGATGA
* * * * *
87864552 CAGATTTGACATCTCTGTATTGACAGAGAGCAGATTGAAGATGA
1 CAGATTTGGCGTCTCTATATTGTCAGAGAGCAGATCGAAGATGA
* *
87864596 CAAATTTGGCGTCTCTATATTGTCTGAGAG
1 CAGATTTGGCGTCTCTATATTGTCAGAGAG
87864626 TTAGCGTCTC
Statistics
Matches: 217, Mismatches: 27, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
42 38 0.18
43 1 0.00
44 178 0.82
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (44 bp):
CAGATTTGGCGTCTCTATATTGTCAGAGAGCAGATCGAAGATGA
Found at i:87864625 original size:88 final size:88
Alignment explanation
Indices: 87864334--87864625 Score: 435
Period size: 88 Copynumber: 3.3 Consensus size: 88
87864324 TCACCGATAG
*
87864334 CAGATTTGGCGTCTCTATATTGTCAGAGAGCAGATCAAAGATAACAGATTTGGCGTCTCTGTATT
1 CAGATTTGGCGTCTCTATATTGTCAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATT
87864399 GACAGAGAGCAGATCGAAGATGA
66 GACAGAGAGCAGATCGAAGATGA
* ** * * *
87864422 TAGATTTGGC--CTCTATATTGAAAGAGAGCAGATCGAAGATGACAGATTTGGTGTCTCTATATT
1 CAGATTTGGCGTCTCTATATTGTCAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATT
*
87864485 GATAGAGAGCAGATCGAAGATGA
66 GACAGAGAGCAGATCGAAGATGA
* * * *
87864508 CAGATTTGGCGTCTCCATATTGTTAGAGAGCAGATCGAAGATAACAGATTTGACATCTCTGTATT
1 CAGATTTGGCGTCTCTATATTGTCAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATT
*
87864573 GACAGAGAGCAGATTGAAGATGA
66 GACAGAGAGCAGATCGAAGATGA
* *
87864596 CAAATTTGGCGTCTCTATATTGTCTGAGAG
1 CAGATTTGGCGTCTCTATATTGTCAGAGAG
87864626 TTAGCGTCTC
Statistics
Matches: 179, Mismatches: 23, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
86 78 0.44
88 101 0.56
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (88 bp):
CAGATTTGGCGTCTCTATATTGTCAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATT
GACAGAGAGCAGATCGAAGATGA
Found at i:87864694 original size:69 final size:69
Alignment explanation
Indices: 87864563--87864694 Score: 176
Period size: 69 Copynumber: 1.9 Consensus size: 69
87864553 AGATTTGACA
* * * * *
87864563 TCTCTGTATTGACAGAGAGCAGATTGAAGATGACAAATTTGGCGTCTCTATATTGTCTGAGAGTT
1 TCTCTATATTGACAGAGAGCAGATCGAAGATGACAAATTTGGCATCTCTATATTGACAGAGAGTT
87864628 AGCG
66 AGCG
* * *
87864632 TCTCTATATTGTCAGAGAGCATATCGAAGAT-AGCAAATTTGGCATCTCTGTATTGACAGAGAG
1 TCTCTATATTGACAGAGAGCAGATCGAAGATGA-CAAATTTGGCATCTCTATATTGACAGAGAG
87864695 CAAATCGAAG
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
68 1 0.02
69 53 0.98
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (69 bp):
TCTCTATATTGACAGAGAGCAGATCGAAGATGACAAATTTGGCATCTCTATATTGACAGAGAGTT
AGCG
Found at i:87864695 original size:44 final size:43
Alignment explanation
Indices: 87864632--87864850 Score: 235
Period size: 44 Copynumber: 5.0 Consensus size: 43
87864622 AGAGTTAGCG
* * *
87864632 TCTCTATATTGTCAGAGAGCATATCGAAGATAGCAAATTTGGCA
1 TCTCTGTATTGACAGAGAGCAGATCGAAGAT-GCAAATTTGGCA
* *
87864676 TCTCTGTATTGACAGAGAGCAAATCGAAGATGACAAATTTGACA
1 TCTCTGTATTGACAGAGAGCAGATCGAAGATG-CAAATTTGGCA
* *
87864720 TCTCTGTATT-AGTAGAGAGTAGATCGAAGATGACAAATTTGGCA
1 TCTCTGTATTGA-CAGAGAGCAGATCGAAGATG-CAAATTTGGCA
* ** *
87864764 TCTCTGTATTGATAGAGAGCAGATAAAAGATG-ATAGATTTGACA
1 TCTCTGTATTGACAGAGAGCAGATCGAAGATGCA-A-ATTTGGCA
* * *
87864808 TCTCTGTATTGACAGAGAGTAGATTGAAGATAGCAGATTTGGC
1 TCTCTGTATTGACAGAGAGCAGATCGAAGAT-GCAAATTTGGC
87864851 GTCATTGGTA
Statistics
Matches: 150, Mismatches: 18, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
42 1 0.01
43 3 0.02
44 143 0.95
45 2 0.01
46 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.29
Consensus pattern (43 bp):
TCTCTGTATTGACAGAGAGCAGATCGAAGATGCAAATTTGGCA
Found at i:87864724 original size:113 final size:113
Alignment explanation
Indices: 87864516--87864729 Score: 329
Period size: 113 Copynumber: 1.9 Consensus size: 113
87864506 GACAGATTTG
* *
87864516 GCGTCTCCATATTGTTAGAGAGCAGATCGAAGATAACAGATTTGACATCTCTGTATTGACAGAGA
1 GCGTCTCCATATTGTCAGAGAGCAGATCGAAGATAACAAATTTGACATCTCTGTATTGACAGAGA
* * * *
87864581 GCAGATTGAAGATGACAAATTTGGCGTCTCTATATTGTCTGAGAGTTA
66 GCAAATCGAAGATGACAAATTTGACATCTCTATATTGTCTGAGAGTTA
* * * *
87864629 GCGTCTCTATATTGTCAGAGAGCATATCGAAGATAGCAAATTTGGCATCTCTGTATTGACAGAGA
1 GCGTCTCCATATTGTCAGAGAGCAGATCGAAGATAACAAATTTGACATCTCTGTATTGACAGAGA
*
87864694 GCAAATCGAAGATGACAAATTTGACATCTCTGTATT
66 GCAAATCGAAGATGACAAATTTGACATCTCTATATT
87864730 AGTAGAGAGT
Statistics
Matches: 90, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
113 90 1.00
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (113 bp):
GCGTCTCCATATTGTCAGAGAGCAGATCGAAGATAACAAATTTGACATCTCTGTATTGACAGAGA
GCAAATCGAAGATGACAAATTTGACATCTCTATATTGTCTGAGAGTTA
Found at i:87864760 original size:157 final size:157
Alignment explanation
Indices: 87864474--87864774 Score: 419
Period size: 157 Copynumber: 1.9 Consensus size: 157
87864464 CAGATTTGGT
* * **
87864474 GTCTCTATATTGATAGAGAGCAGATCGAAGATGACAGATTTGGCGTCTCCATATTGTTAGAGAGC
1 GTCTCTATATTGATAGAGAGCAGATCGAAGATGACAAATTTGGCATCTCCATATTGACAGAGAGC
* * *
87864539 AGATCGAAGATAACAGATTTGACATCTCTGTATTGACAGAGAGCAGATTGAAGATGACAAATTTG
66 AAATCGAAGATAACAAATTTGACATCTCTGTATTGACAGAGAGCAGATCGAAGATGACAAATTTG
*
87864604 GCGTCTCTATATTGTCTGAGAGTTAGC
131 GCATCTCTATATTGTCTGAGAGTTAGC
* **
87864631 GTCTCTATATTG-TCAGAGAGCATATCGAAGAT-AGCAAATTTGGCATCTCTGTATTGACAGAGA
1 GTCTCTATATTGAT-AGAGAGCAGATCGAAGATGA-CAAATTTGGCATCTCCATATTGACAGAGA
* * *
87864694 GCAAATCGAAGATGACAAATTTGACATCTCTGTATT-AGTAGAGAGTAGATCGAAGATGACAAAT
64 GCAAATCGAAGATAACAAATTTGACATCTCTGTATTGA-CAGAGAGCAGATCGAAGATGACAAAT
*
87864758 TTGGCATCTCTGTATTG
128 TTGGCATCTCTATATTG
87864775 ATAGAGAGCA
Statistics
Matches: 126, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
156 3 0.02
157 123 0.98
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.30
Consensus pattern (157 bp):
GTCTCTATATTGATAGAGAGCAGATCGAAGATGACAAATTTGGCATCTCCATATTGACAGAGAGC
AAATCGAAGATAACAAATTTGACATCTCTGTATTGACAGAGAGCAGATCGAAGATGACAAATTTG
GCATCTCTATATTGTCTGAGAGTTAGC
Found at i:87864781 original size:88 final size:87
Alignment explanation
Indices: 87864632--87864850 Score: 287
Period size: 88 Copynumber: 2.5 Consensus size: 87
87864622 AGAGTTAGCG
* * *
87864632 TCTCTATATTGTCAGAGAGCATATCGAAGATAGCAAATTTGGCATCTCTGTATTGACAGAGAGCA
1 TCTCTGTATTGT-AGAGAGTAGATCGAAGATAGCAAATTTGGCATCTCTGTATTGACAGAGAGCA
**
87864697 AATCGAAGATGACAAATTTGACA
65 AATAAAAGATGACAAATTTGACA
*
87864720 TCTCTGTATTAGTAGAGAGTAGATCGAAGAT-GACAAATTTGGCATCTCTGTATTGATAGAGAGC
1 TCTCTGTATT-GTAGAGAGTAGATCGAAGATAG-CAAATTTGGCATCTCTGTATTGACAGAGAGC
* * *
87864784 AGATAAAAGATGATAGATTTGACA
64 AAATAAAAGATGACAAATTTGACA
* * *
87864808 TCTCTGTATTGACAGAGAGTAGATTGAAGATAGCAGATTTGGC
1 TCTCTGTATTG-TAGAGAGTAGATCGAAGATAGCAAATTTGGC
87864851 GTCATTGGTA
Statistics
Matches: 115, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
87 2 0.02
88 110 0.96
89 3 0.03
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.29
Consensus pattern (87 bp):
TCTCTGTATTGTAGAGAGTAGATCGAAGATAGCAAATTTGGCATCTCTGTATTGACAGAGAGCAA
ATAAAAGATGACAAATTTGACA
Found at i:87864783 original size:201 final size:201
Alignment explanation
Indices: 87864432--87864796 Score: 509
Period size: 201 Copynumber: 1.8 Consensus size: 201
87864422 TAGATTTGGC
* ** * *
87864432 CTCTATATTGAAAGAGAGCAGATCGAAGATGACAGATTTGGTGTCTCTATATTGATAGAGAGCAG
1 CTCTATATTGAAAGAGAGCAGATCGAAGATGACAAATTTGGCATCTCTATATTGACAGAGAGCAA
* * * *
87864497 ATCGAAGATGACAGATTTGGCGTCTCCATATTGTTAGAGAGCAGATCGAAGATAACAGATTTGAC
66 ATCGAAGATGACAAATTTGACATCTCCATATTGTTAGAGAGCAGATCGAAGATAACAAATTTGAC
**
87864562 ATCTCTGTATTGACAGAGAGCAGATTGAAGATGACAAATTTGGCGTCTCTATATTGTCTGAGAGT
131 ATCTCTGTATTGACAGAGAGCAGATAAAAGATGACAAATTTGGCGTCTCTATATTGTCTGAGAGT
87864627 TAGCGT
196 TAGCGT
** * *
87864633 CTCTATATTGTCAGAGAGCATATCGAAGAT-AGCAAATTTGGCATCTCTGTATTGACAGAGAGCA
1 CTCTATATTGAAAGAGAGCAGATCGAAGATGA-CAAATTTGGCATCTCTATATTGACAGAGAGCA
** * *
87864697 AATCGAAGATGACAAATTTGACATCTCTGTATTAG-TAGAGAGTAGATCGAAGATGACAAATTTG
65 AATCGAAGATGACAAATTTGACATCTCCATATT-GTTAGAGAGCAGATCGAAGATAACAAATTTG
* *
87864761 GCATCTCTGTATTGATAGAGAGCAGATAAAAGATGA
129 ACATCTCTGTATTGACAGAGAGCAGATAAAAGATGA
87864797 TAGATTTGAC
Statistics
Matches: 141, Mismatches: 21, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
200 1 0.01
201 139 0.99
202 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (201 bp):
CTCTATATTGAAAGAGAGCAGATCGAAGATGACAAATTTGGCATCTCTATATTGACAGAGAGCAA
ATCGAAGATGACAAATTTGACATCTCCATATTGTTAGAGAGCAGATCGAAGATAACAAATTTGAC
ATCTCTGTATTGACAGAGAGCAGATAAAAGATGACAAATTTGGCGTCTCTATATTGTCTGAGAGT
TAGCGT
Found at i:87864814 original size:245 final size:243
Alignment explanation
Indices: 87864386--87864853 Score: 647
Period size: 245 Copynumber: 1.9 Consensus size: 243
87864376 AACAGATTTG
*
87864386 GCGTCTCTGTATTGACAGAGAGCAGATCGAAGATGATAGATTTGGCCTCTATATTGAAAGAGAGC
1 GCGTCTCTATATTGACAGAGAGCAGATCGAAGATGATAGATTTGGCCTCTATATTGAAAGAGAGC
* * *** *
87864451 AGATCGAAGATGACAGATTTGGTGTCTCTATATTGATAGAGAGCAGATCGAAGATGACAGATTTG
66 AAATCGAAGATGACAAATTTGACATCTCTATATTGATAGAGAGCAGATCGAAGATGACAAATTTG
* * **
87864516 GCGTCTCCATATTGTTAGAGAGCAGATCGAAGATAACAGATTTGACATCTCTGTATTGACAGAGA
131 GCATCTCCATATTGATAGAGAGCAGATAAAAGATAACAGATTTGACATCTCTGTATTGACAGAGA
87864581 GCAGATTGAAGAT-GACAAATTTGGCGTCTCTATATTGTCTGAGAGTTA
196 GCAGATTGAAGATAG-CAAATTTGGCGTCTCTATATTGTCTGAGAGTTA
* * * *
87864629 GCGTCTCTATATTGTCAGAGAGCATATCGAAGATAGCA-A-ATTTGGCATCTCTGTATTGACAGA
1 GCGTCTCTATATTGACAGAGAGCAGATCGAAGAT-G-ATAGATTTGGC--CTCTATATTGAAAGA
* *
87864692 GAGCAAATCGAAGATGACAAATTTGACATCTCTGTATT-AGTAGAGAGTAGATCGAAGATGACAA
62 GAGCAAATCGAAGATGACAAATTTGACATCTCTATATTGA-TAGAGAGCAGATCGAAGATGACAA
** * *
87864756 ATTTGGCATCTCTGTATTGATAGAGAGCAGATAAAAGATGATAGATTTGACATCTCTGTATTGAC
126 ATTTGGCATCTCCATATTGATAGAGAGCAGATAAAAGATAACAGATTTGACATCTCTGTATTGAC
* *
87864821 AGAGAGTAGATTGAAGATAGCAGATTTGGCGTC
191 AGAGAGCAGATTGAAGATAGCAAATTTGGCGTC
87864854 ATTGGTAACC
Statistics
Matches: 196, Mismatches: 23, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
243 38 0.19
244 3 0.02
245 154 0.79
246 1 0.01
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (243 bp):
GCGTCTCTATATTGACAGAGAGCAGATCGAAGATGATAGATTTGGCCTCTATATTGAAAGAGAGC
AAATCGAAGATGACAAATTTGACATCTCTATATTGATAGAGAGCAGATCGAAGATGACAAATTTG
GCATCTCCATATTGATAGAGAGCAGATAAAAGATAACAGATTTGACATCTCTGTATTGACAGAGA
GCAGATTGAAGATAGCAAATTTGGCGTCTCTATATTGTCTGAGAGTTA
Found at i:87865946 original size:44 final size:44
Alignment explanation
Indices: 87865890--87866500 Score: 738
Period size: 44 Copynumber: 13.9 Consensus size: 44
87865880 AGATCTACTG
*
87865890 TCTTTGATCTGCTCTCTATCAATACAGAGACGCCAAATCTG-CTA
1 TCTTCGATCTGCTCTCTATCAATACAGAGACGCCAAATCTGTC-A
* * *
87865934 TCTTCAATCTGCTCTCTGTCAATACAGAGACGCCAAATCTATCA
1 TCTTCGATCTGCTCTCTATCAATACAGAGACGCCAAATCTGTCA
* *
87865978 TCTTCGATCTGCTCTCTATCAATATAGAGATGCCAAATCTGTCA
1 TCTTCGATCTGCTCTCTATCAATACAGAGACGCCAAATCTGTCA
* * *
87866022 TCTTCGATCTACTCTCT-GCTAATACAGAGATGCCAAATCTGTCA
1 TCTTCGATCTGCTCTCTATC-AATACAGAGACGCCAAATCTGTCA
* * * *
87866066 TCTTTGATTTGCTCTCTATCAATACAAAGATGCCAAATCTG-CTA
1 TCTTCGATCTGCTCTCTATCAATACAGAGACGCCAAATCTGTC-A
* *
87866110 TCTTCGATCTGCTCTCTGA-CAATATAGAGACGTCAAATCTGTCA
1 TCTTCGATCTGCTCTCT-ATCAATACAGAGACGCCAAATCTGTCA
* * * *
87866154 TCTTCGATCTGCTCTCTGTCAATAAAGAGATGTCAAATCTG-CTA
1 TCTTCGATCTGCTCTCTATCAATACAGAGACGCCAAATCTGTC-A
* *
87866198 TCTTCGATATGCTCTCTGA-CAATATAGAGACGCCAAATCTGTCA
1 TCTTCGATCTGCTCTCT-ATCAATACAGAGACGCCAAATCTGTCA
* * * * *
87866242 TCTTC-ATTCTACTCTCTGTCAATACAGAGATGTCAAATCTGTTA
1 TCTTCGA-TCTGCTCTCTATCAATACAGAGACGCCAAATCTGTCA
* *
87866286 TCTTCGATCTGCTCTCTAACAATATAGAGACGCCAAATCTGTCA
1 TCTTCGATCTGCTCTCTATCAATACAGAGACGCCAAATCTGTCA
* *
87866330 TCTTCGATCTGCTCTCTATCAATAAAGAGACACCAAATCTGTCA
1 TCTTCGATCTGCTCTCTATCAATACAGAGACGCCAAATCTGTCA
* * * *
87866374 CCTTCGATCTGCTCTCTGTCAATAC--AGATGCCAAATCTATCA
1 TCTTCGATCTGCTCTCTATCAATACAGAGACGCCAAATCTGTCA
* * *
87866416 TCTTCGATCTGCTCTCTGTCAATACAGAGATGCCAAATCTGTTA
1 TCTTCGATCTGCTCTCTATCAATACAGAGACGCCAAATCTGTCA
*
87866460 TCTTTGATCTGCTCTCTGA-CAATACAGAGACGCCAAATCTG
1 TCTTCGATCTGCTCTCT-ATCAATACAGAGACGCCAAATCTG
87866501 CTATCGGTGA
Statistics
Matches: 491, Mismatches: 60, Indels: 32
0.84 0.10 0.05
Matches are distributed among these distances:
42 38 0.08
43 4 0.01
44 443 0.90
45 6 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (44 bp):
TCTTCGATCTGCTCTCTATCAATACAGAGACGCCAAATCTGTCA
Found at i:87866007 original size:88 final size:88
Alignment explanation
Indices: 87865890--87866500 Score: 838
Period size: 88 Copynumber: 7.0 Consensus size: 88
87865880 AGATCTACTG
* * * *
87865890 TCTTTGATCTGCTCTCTATCAATACAGAGACGCCAAATCTGCTATCTTCAATCTGCTCTCTGTCA
1 TCTTCGATCTGCTCTCTATCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACA
*
87865955 ATACAGAGACGCCAAATCTATCA
66 ATACAGAGACGCCAAATCTGTCA
* *
87865978 TCTTCGATCTGCTCTCTATCAATATAGAGATGCCAAATCTG-TCATCTTCGATCTACTCTCTG-C
1 TCTTCGATCTGCTCTCTATCAATACAGAGATGCCAAATCTGCT-ATCTTCGATCTGCTCTCTGAC
*
87866041 TAATACAGAGATGCCAAATCTGTCA
65 -AATACAGAGACGCCAAATCTGTCA
* * *
87866066 TCTTTGATTTGCTCTCTATCAATACAAAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACA
1 TCTTCGATCTGCTCTCTATCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACA
* *
87866131 ATATAGAGACGTCAAATCTGTCA
66 ATACAGAGACGCCAAATCTGTCA
* * * *
87866154 TCTTCGATCTGCTCTCTGTCAATAAAGAGATGTCAAATCTGCTATCTTCGATATGCTCTCTGACA
1 TCTTCGATCTGCTCTCTATCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACA
*
87866219 ATATAGAGACGCCAAATCTGTCA
66 ATACAGAGACGCCAAATCTGTCA
* * * * *
87866242 TCTTC-ATTCTACTCTCTGTCAATACAGAGATGTCAAATCTGTTATCTTCGATCTGCTCTCTAAC
1 TCTTCGA-TCTGCTCTCTATCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGAC
*
87866306 AATATAGAGACGCCAAATCTGTCA
65 AATACAGAGACGCCAAATCTGTCA
* ** * *
87866330 TCTTCGATCTGCTCTCTATCAATAAAGAGACACCAAATCTG-TCACCTTCGATCTGCTCTCTGTC
1 TCTTCGATCTGCTCTCTATCAATACAGAGATGCCAAATCTGCT-ATCTTCGATCTGCTCTCTGAC
* *
87866394 AATAC--AGATGCCAAATCTATCA
65 AATACAGAGACGCCAAATCTGTCA
* * *
87866416 TCTTCGATCTGCTCTCTGTCAATACAGAGATGCCAAATCTGTTATCTTTGATCTGCTCTCTGACA
1 TCTTCGATCTGCTCTCTATCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACA
87866481 ATACAGAGACGCCAAATCTG
66 ATACAGAGACGCCAAATCTG
87866501 CTATCGGTGA
Statistics
Matches: 464, Mismatches: 49, Indels: 20
0.87 0.09 0.04
Matches are distributed among these distances:
86 75 0.16
87 5 0.01
88 381 0.82
89 3 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (88 bp):
TCTTCGATCTGCTCTCTATCAATACAGAGATGCCAAATCTGCTATCTTCGATCTGCTCTCTGACA
ATACAGAGACGCCAAATCTGTCA
Found at i:87868733 original size:19 final size:19
Alignment explanation
Indices: 87868683--87868733 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 19
87868673 ACATTTCAAG
*
87868683 AATAAGTAATATCAATTATT
1 AATAAGTAATA-AAATTATT
87868703 AATAA-TAGATAAAATTATT
1 AATAAGTA-ATAAAATTATT
87868722 AATAAGTAATAA
1 AATAAGTAATAA
87868734 GTTTTTATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 18 0.64
20 10 0.36
ACGTcount: A:0.57, C:0.02, G:0.06, T:0.35
Consensus pattern (19 bp):
AATAAGTAATAAAATTATT
Found at i:87868950 original size:9 final size:9
Alignment explanation
Indices: 87868936--87868962 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
87868926 AAACCGTTAG
87868936 TTGATCGTC
1 TTGATCGTC
87868945 TTGATCGTC
1 TTGATCGTC
87868954 TTGATCGTC
1 TTGATCGTC
87868963 AAAGGCACTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.11, C:0.22, G:0.22, T:0.44
Consensus pattern (9 bp):
TTGATCGTC
Found at i:87869070 original size:17 final size:18
Alignment explanation
Indices: 87869042--87869083 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
87869032 TAAAAAAATT
**
87869042 AAATATATTTTTTTTAAA
1 AAATATATTTTTTCCAAA
87869060 AAATA-ATTTTTTCCAAA
1 AAATATATTTTTTCCAAA
87869077 AAATATA
1 AAATATA
87869084 AAAAAACTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (18 bp):
AAATATATTTTTTCCAAA
Found at i:87869195 original size:17 final size:17
Alignment explanation
Indices: 87869173--87869206 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
87869163 TTTAGATGAG
87869173 TTAAAAACTAAAAAAAT
1 TTAAAAACTAAAAAAAT
* *
87869190 TTAAAAATTATAAAAAT
1 TTAAAAACTAAAAAAAT
87869207 ATATATTAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (17 bp):
TTAAAAACTAAAAAAAT
Found at i:87869272 original size:20 final size:23
Alignment explanation
Indices: 87869247--87869291 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 23
87869237 AAATTGAAAA
87869247 ATTC-AATAATTTTA-A-TATAT
1 ATTCAAATAATTTTATATTATAT
*
87869267 ATTCAAATATTTTTATATTATAT
1 ATTCAAATAATTTTATATTATAT
87869290 AT
1 AT
87869292 AAAAATTTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 4 0.19
21 9 0.43
22 1 0.05
23 7 0.33
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.53
Consensus pattern (23 bp):
ATTCAAATAATTTTATATTATAT
Found at i:87869299 original size:21 final size:20
Alignment explanation
Indices: 87869247--87869299 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
87869237 AAATTGAAAA
*
87869247 ATTCAATAATTTTAATATAT
1 ATTCAAAAATTTTAATATAT
* *
87869267 ATTCAAATATTTTTATATTAT
1 ATTCAAAAATTTTAATA-TAT
87869288 ATAT-AAAAATTT
1 AT-TCAAAAATTT
87869300 CCAATGGTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 14 0.52
21 12 0.44
22 1 0.04
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (20 bp):
ATTCAAAAATTTTAATATAT
Found at i:87869422 original size:34 final size:35
Alignment explanation
Indices: 87869355--87869422 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 35
87869345 ATTCAAATAT
* **
87869355 AAAAATTATTAATTCAATTTGAAATTTTGAATTTA
1 AAAAATTATTAATTCAATTTCAAATTTCCAATTTA
* *
87869390 AAAAATTA-TATTTGAATTTCAAATTTCCAATTT
1 AAAAATTATTAATTCAATTTCAAATTTCCAATTT
87869423 GACTTTTTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
34 20 0.71
35 8 0.29
ACGTcount: A:0.44, C:0.06, G:0.04, T:0.46
Consensus pattern (35 bp):
AAAAATTATTAATTCAATTTCAAATTTCCAATTTA
Found at i:87870797 original size:26 final size:25
Alignment explanation
Indices: 87870740--87870797 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
87870730 TTCTTTGTAC
* * *
87870740 AAAGCTTCTACCATTTTATCATTTT
1 AAAGCTTCAACCATTTTACCATCTT
* *
87870765 CAAGCTTCAACTATTTCTACCATCTT
1 AAAGCTTCAACCATTT-TACCATCTT
87870791 AAAGCTT
1 AAAGCTT
87870798 TTAATCTTCT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
25 13 0.50
26 13 0.50
ACGTcount: A:0.29, C:0.24, G:0.05, T:0.41
Consensus pattern (25 bp):
AAAGCTTCAACCATTTTACCATCTT
Found at i:87872306 original size:28 final size:31
Alignment explanation
Indices: 87872275--87872335 Score: 83
Period size: 30 Copynumber: 2.0 Consensus size: 31
87872265 TTATATATTT
87872275 AGAATTTAG-T-CTTTACTTTTT-ATTTTAA
1 AGAATTTAGTTACTTTACTTTTTAATTTTAA
*
87872303 AGAATTTAGTTATTTTACTTTTTAAATTTTAA
1 AGAATTTAGTTACTTTACTTTTT-AATTTTAA
87872335 A
1 A
87872336 ATTCAAGTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 9 0.32
29 1 0.04
30 10 0.36
32 8 0.29
ACGTcount: A:0.33, C:0.05, G:0.07, T:0.56
Consensus pattern (31 bp):
AGAATTTAGTTACTTTACTTTTTAATTTTAA
Found at i:87878013 original size:7 final size:7
Alignment explanation
Indices: 87878001--87878029 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
87877991 AGCCCAACCG
87878001 AGGGACC
1 AGGGACC
87878008 AGGGACC
1 AGGGACC
87878015 AGGGACC
1 AGGGACC
87878022 AGGGACC
1 AGGGACC
87878029 A
1 A
87878030 TTTGAGCGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.31, C:0.28, G:0.41, T:0.00
Consensus pattern (7 bp):
AGGGACC
Found at i:87882037 original size:30 final size:30
Alignment explanation
Indices: 87882002--87882058 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
87881992 TAGGCACATC
*
87882002 CACACAGGTAAACCACATGCCCGTGTGAGG
1 CACACAGGCAAACCACATGCCCGTGTGAGG
** *
87882032 CACACAGGCAGGCCACATGCCTGTGTG
1 CACACAGGCAAACCACATGCCCGTGTG
87882059 TCATGGCCGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.26, C:0.32, G:0.28, T:0.14
Consensus pattern (30 bp):
CACACAGGCAAACCACATGCCCGTGTGAGG
Found at i:87889508 original size:19 final size:21
Alignment explanation
Indices: 87889475--87889514 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
87889465 CCTGTAACCC
*
87889475 TAAATTCTCCTTTTC-CTATT
1 TAAATTCTCCCTTTCACTATT
87889495 TAAA-TCTCCCTTTCACTATT
1 TAAATTCTCCCTTTCACTATT
87889515 CATCATCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.23, C:0.28, G:0.00, T:0.50
Consensus pattern (21 bp):
TAAATTCTCCCTTTCACTATT
Found at i:87894131 original size:24 final size:24
Alignment explanation
Indices: 87894104--87894150 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
87894094 ATAAAGATAA
87894104 TGTATTATTTACATACAAACTTAT
1 TGTATTATTTACATACAAACTTAT
87894128 TGTATTATTTACATACAAACTTA
1 TGTATTATTTACATACAAACTTA
87894151 CATACTTTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.38, C:0.13, G:0.04, T:0.45
Consensus pattern (24 bp):
TGTATTATTTACATACAAACTTAT
Found at i:87906351 original size:43 final size:43
Alignment explanation
Indices: 87906226--87906352 Score: 125
Period size: 43 Copynumber: 3.0 Consensus size: 43
87906216 CAGAAAGCTC
* * * *
87906226 ATACAATGCCAATGTCCCAGATGTGGTCTTACATGT-GATCAA
1 ATACGATGCCAATGTTCCAGATATGGTCTTACATGTAAATCAA
* * * *
87906268 ATATTGATGCTACTG-TCCTAGATAGGGTCTTACATG-AAATCAA
1 ATA-CGATGCCAATGTTCC-AGATATGGTCTTACATGTAAATCAA
* *
87906311 ATACGATGCCAATGTTCCAGACATGGTCTTACAAGTAAATCA
1 ATACGATGCCAATGTTCCAGATATGGTCTTACATGTAAATCA
87906353 TAAGTCAATG
Statistics
Matches: 66, Mismatches: 14, Indels: 9
0.74 0.16 0.10
Matches are distributed among these distances:
42 27 0.41
43 39 0.59
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (43 bp):
ATACGATGCCAATGTTCCAGATATGGTCTTACATGTAAATCAA
Done.