Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 264 of 349
Found at i:87906701 original size:15 final size:15
Alignment explanation
Indices: 87906681--87906721 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
87906671 ATCTAAATCA
** *
87906681 ATTCAAATTTAATTT
1 ATTCAAATCAAATTC
87906696 ATTCAAATCAAATTC
1 ATTCAAATCAAATTC
87906711 ATTCAAATCAA
1 ATTCAAATCAA
87906722 TCCAAACAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.39
Consensus pattern (15 bp):
ATTCAAATCAAATTC
Found at i:87914022 original size:15 final size:16
Alignment explanation
Indices: 87914002--87914039 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
87913992 ACTTGGAAAG
*
87914002 ATGAAAA-GTGATTAA
1 ATGAAAATGTAATTAA
*
87914017 ATGAAAATTTAATTAA
1 ATGAAAATGTAATTAA
87914033 ATGAAAA
1 ATGAAAA
87914040 AGAAAACAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 7 0.35
16 13 0.65
ACGTcount: A:0.58, C:0.00, G:0.13, T:0.29
Consensus pattern (16 bp):
ATGAAAATGTAATTAA
Found at i:87914376 original size:20 final size:20
Alignment explanation
Indices: 87914351--87914391 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
87914341 ACTAAAATGT
*
87914351 AAAATTGTGAAATTTGATGA
1 AAAATTCTGAAATTTGATGA
* *
87914371 AAAATTCTGAATTTTTATGA
1 AAAATTCTGAAATTTGATGA
87914391 A
1 A
87914392 TACATGTGCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.44, C:0.02, G:0.15, T:0.39
Consensus pattern (20 bp):
AAAATTCTGAAATTTGATGA
Found at i:87917988 original size:48 final size:48
Alignment explanation
Indices: 87917913--87918143 Score: 225
Period size: 48 Copynumber: 4.8 Consensus size: 48
87917903 CTATTAAAGT
* *
87917913 ACCAATGCCATGTCCCCGACATGGTCTTACA-T-GAATCCACATATCATC
1 ACCAATGCCATGTCCCAGACATGGTCTTACACTGGCA--CACATATCATC
**
87917961 ACCAATGCCATGTCCCAGACACAGTCTTACACTGGCACACATATCATC
1 ACCAATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATC
* * * * * *
87918009 TCTAATGCCATATCCCAGACATGGTCTTACACAGGCACATATATCCTC
1 ACCAATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATC
* ** *
87918057 ACCGATGCCATGTCCCA-AGCATGGTCTTACACAAGCACATATATCATC
1 ACCAATGCCATGTCCCAGA-CATGGTCTTACACTGGCACACATATCATC
* * ** * * *
87918105 ACCGATTCCATCCCCCATACATGGTCTTTCACAGGCACA
1 ACCAATGCCATGTCCCAGACATGGTCTTACACTGGCACA
87918144 TTTAGCACGG
Statistics
Matches: 156, Mismatches: 23, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
47 1 0.01
48 151 0.97
49 2 0.01
50 2 0.01
ACGTcount: A:0.29, C:0.34, G:0.13, T:0.24
Consensus pattern (48 bp):
ACCAATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATC
Found at i:87918567 original size:30 final size:30
Alignment explanation
Indices: 87918489--87918570 Score: 137
Period size: 30 Copynumber: 2.7 Consensus size: 30
87918479 TTATGATATG
*
87918489 ACAAAATTACAATTTTACCCCTCATAGTTT
1 ACAAAATTACAATTTTGCCCCTCATAGTTT
87918519 ACAAAATTACAATTTTGCCCCTCATAGTTT
1 ACAAAATTACAATTTTGCCCCTCATAGTTT
**
87918549 ACAAAATTACAAAATTGCCCCT
1 ACAAAATTACAATTTTGCCCCT
87918571 AGGCTCGTAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.38, C:0.24, G:0.05, T:0.33
Consensus pattern (30 bp):
ACAAAATTACAATTTTGCCCCTCATAGTTT
Found at i:88251405 original size:18 final size:19
Alignment explanation
Indices: 88251373--88251408 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
88251363 TAAGGCTAAC
88251373 AATGGTTGAAACTCGTTAT
1 AATGGTTGAAACTCGTTAT
88251392 AATGGTTG-AACTCGTTA
1 AATGGTTGAAACTCGTTA
88251409 CCACGAGGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.31, C:0.11, G:0.22, T:0.36
Consensus pattern (19 bp):
AATGGTTGAAACTCGTTAT
Found at i:88252246 original size:44 final size:43
Alignment explanation
Indices: 88252159--88252455 Score: 361
Period size: 43 Copynumber: 6.7 Consensus size: 43
88252149 AGTCCTCGTC
*
88252159 TTTAGCGGCGCTTTTTTA-AAAAACG-CGCTAAAGACGGAGGACT
1 TTTAGCGGCGC-TTTTTAGAAAAACGCCGCTAAAGAC-CAGGACT
* *
88252202 TTTAGCGGCGCTTTTTAGAAAAACGCCCGTTGAAGACCAGGACT
1 TTTAGCGGCGCTTTTTAGAAAAACG-CCGCTAAAGACCAGGACT
* *
88252246 TTTAGCAGCGTCTTTTTAAAACAAACGCCGCTAAAGACCAGGACT
1 TTTAGCGGCG-CTTTTTAGAA-AAACGCCGCTAAAGACCAGGACT
88252291 TTTAGC-GCGCTTTCTTTA-AAAAACGCCGCTAAAGACCAGGACTT
1 TTTAGCGGCGC-TT-TTTAGAAAAACGCCGCTAAAGACCAGGAC-T
* *
88252335 TTTAGCGGCGCCTTTTAGAAAAACGCCGCTAAAGACAAGGACT
1 TTTAGCGGCGCTTTTTAGAAAAACGCCGCTAAAGACCAGGACT
* *
88252378 TTTAGCGGCGC-TTTTAGAAAAACACCGCTAAAGAACAGGACT
1 TTTAGCGGCGCTTTTTAGAAAAACGCCGCTAAAGACCAGGACT
*
88252420 TTTAGCGGCGCTTGTTTTTATAAAAAACGCCGCTAA
1 TTTAGCGGCGC---TTTTTA-GAAAAACGCCGCTAA
88252456 TTTTCGTAAT
Statistics
Matches: 225, Mismatches: 14, Indels: 26
0.85 0.05 0.10
Matches are distributed among these distances:
42 45 0.20
43 57 0.25
44 53 0.24
45 47 0.21
46 10 0.04
47 13 0.06
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (43 bp):
TTTAGCGGCGCTTTTTAGAAAAACGCCGCTAAAGACCAGGACT
Found at i:88252309 original size:132 final size:129
Alignment explanation
Indices: 88252159--88252455 Score: 402
Period size: 133 Copynumber: 2.2 Consensus size: 129
88252149 AGTCCTCGTC
* *
88252159 TTTAGCGGCGCTTTTTTAAAAAACG-CGCTAAAGACGGAGGAC-TTTTAGCGGCGCTTTTTAGAA
1 TTTAGCGGCGCTTTTTTAAAAAACGCCGCTAAAGAC-CAGGACTTTTTAGCGGCGCCTTTTAGAA
* * * * *
88252222 AAACGCCCGTTGAAGACCAGGACTTTTAGCAGCGTCTTTTTAAAACAAACGCCGCTAAAGACCAG
65 AAACG-CCGCTAAAGACAAGGACTTTTAGCAGCG-C-TTTTAAAA-AAACACCGCTAAAGAACAG
88252287 GACT
126 GACT
88252291 TTTAGC-GCGCTTTCTTTAAAAAACGCCGCTAAAGACCAGGACTTTTTAGCGGCGCCTTTTAGAA
1 TTTAGCGGCGCTTT-TTTAAAAAACGCCGCTAAAGACCAGGACTTTTTAGCGGCGCCTTTTAGAA
* *
88252355 AAACGCCGCTAAAGACAAGGACTTTTAGCGGCGCTTTTAGAAAAACACCGCTAAAGAACAGGACT
65 AAACGCCGCTAAAGACAAGGACTTTTAGCAGCGCTTTTAAAAAAACACCGCTAAAGAACAGGACT
88252420 TTTAGCGGCGCTTGTTTTTATAAAAAACGCCGCTAA
1 TTTAGCGGCGC---TTTTT-TAAAAAACGCCGCTAA
88252456 TTTTCGTAAT
Statistics
Matches: 148, Mismatches: 9, Indels: 15
0.86 0.05 0.09
Matches are distributed among these distances:
129 27 0.18
130 11 0.07
131 8 0.05
132 48 0.32
133 54 0.36
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (129 bp):
TTTAGCGGCGCTTTTTTAAAAAACGCCGCTAAAGACCAGGACTTTTTAGCGGCGCCTTTTAGAAA
AACGCCGCTAAAGACAAGGACTTTTAGCAGCGCTTTTAAAAAAACACCGCTAAAGAACAGGACT
Found at i:88252773 original size:20 final size:20
Alignment explanation
Indices: 88252748--88252786 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
88252738 TATGTTTTTG
*
88252748 CTCCGCCTCCCTCGCTGCTC
1 CTCCGCCTCCCGCGCTGCTC
*
88252768 CTCCGCCTCTCGCGCTGCT
1 CTCCGCCTCCCGCGCTGCT
88252787 GTTCTCCGCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.00, C:0.56, G:0.18, T:0.26
Consensus pattern (20 bp):
CTCCGCCTCCCGCGCTGCTC
Found at i:88258434 original size:21 final size:21
Alignment explanation
Indices: 88258401--88258444 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
88258391 TGAAATTTTT
* * *
88258401 AATTCTTTTTAAGGTCAATAG
1 AATTATTTATAAGCTCAATAG
*
88258422 AATTATTTATAAGCTCCATAG
1 AATTATTTATAAGCTCAATAG
88258443 AA
1 AA
88258445 CTTTTTTAAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (21 bp):
AATTATTTATAAGCTCAATAG
Found at i:88258511 original size:22 final size:22
Alignment explanation
Indices: 88258476--88258517 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
88258466 AAAATATTTA
*
88258476 AAACATATTAAATATTAAAATC
1 AAACATATTAAATATAAAAATC
* *
88258498 AAACATGTTTAATATAAAAA
1 AAACATATTAAATATAAAAA
88258518 ATAGTAATTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.60, C:0.07, G:0.02, T:0.31
Consensus pattern (22 bp):
AAACATATTAAATATAAAAATC
Found at i:88258887 original size:10 final size:10
Alignment explanation
Indices: 88258872--88258905 Score: 68
Period size: 10 Copynumber: 3.4 Consensus size: 10
88258862 AAATATAAAA
88258872 ACTTATTCAT
1 ACTTATTCAT
88258882 ACTTATTCAT
1 ACTTATTCAT
88258892 ACTTATTCAT
1 ACTTATTCAT
88258902 ACTT
1 ACTT
88258906 CAAATAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.29, C:0.21, G:0.00, T:0.50
Consensus pattern (10 bp):
ACTTATTCAT
Found at i:88259371 original size:20 final size:20
Alignment explanation
Indices: 88259346--88259385 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
88259336 TTATTCATAC
*
88259346 TTAAGTTGAATCAAAAATAA
1 TTAAGTTGAACCAAAAATAA
*
88259366 TTAAGTTGAACCAAATATAA
1 TTAAGTTGAACCAAAAATAA
88259386 AAAAATTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.53, C:0.07, G:0.10, T:0.30
Consensus pattern (20 bp):
TTAAGTTGAACCAAAAATAA
Found at i:88260459 original size:21 final size:20
Alignment explanation
Indices: 88260435--88260474 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
88260425 GTTGGATAGA
*
88260435 AACATGAAAAAAGACCAAAAG
1 AACATCAAAAAA-ACCAAAAG
*
88260456 AACATCTAAAAAACCAAAA
1 AACATCAAAAAAACCAAAA
88260475 TGGAATCACC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.68, C:0.17, G:0.07, T:0.07
Consensus pattern (20 bp):
AACATCAAAAAAACCAAAAG
Found at i:88263812 original size:15 final size:15
Alignment explanation
Indices: 88263782--88263823 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
88263772 ACCACTTTTC
*
88263782 ATATATATAT-TTAT
1 ATATATTTATCTTAT
88263796 ATATATTTATCTTAT
1 ATATATTTATCTTAT
*
88263811 ATACATTTATCTT
1 ATATATTTATCTT
88263824 CTAAATTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 9 0.36
15 16 0.64
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (15 bp):
ATATATTTATCTTAT
Found at i:88264690 original size:14 final size:14
Alignment explanation
Indices: 88264664--88264708 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
88264654 TAAACCTGCT
*
88264664 TAAACCCTAAACCA
1 TAAACCTTAAACCA
* *
88264678 TATATCTTAAACCA
1 TAAACCTTAAACCA
*
88264692 TAAACCTTAAACTA
1 TAAACCTTAAACCA
88264706 TAA
1 TAA
88264709 TGATAATTAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.27
Consensus pattern (14 bp):
TAAACCTTAAACCA
Found at i:88265023 original size:39 final size:39
Alignment explanation
Indices: 88264906--88265032 Score: 110
Period size: 42 Copynumber: 3.1 Consensus size: 39
88264896 AATGCTCTGG
* *** * *
88264906 TTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTA
1 TTTTTAGCGGCATTTTTTTAAAA-CGCCGCTATTGCTTTA
* * *
88264946 TTTTTAGCGGCGTTTTTTTACTAAAACGCCGTTGTTGCTTTA
1 TTTTTAGCGGC-ATTTTTT--TAAAACGCCGCTATTGCTTTA
*
88264988 TTTTTAGCGGCATTTTTTTAAAACGCCACTATTGCTCTGTA
1 TTTTTAGCGGCATTTTTTTAAAACGCCGCTATTGCT-T-TA
88265029 TTTT
1 TTTT
88265033 AAAAATTTTG
Statistics
Matches: 70, Mismatches: 12, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
39 15 0.21
40 12 0.17
41 16 0.23
42 23 0.33
43 4 0.06
ACGTcount: A:0.20, C:0.20, G:0.17, T:0.43
Consensus pattern (39 bp):
TTTTTAGCGGCATTTTTTTAAAACGCCGCTATTGCTTTA
Found at i:88265031 original size:41 final size:41
Alignment explanation
Indices: 88264866--88265032 Score: 162
Period size: 41 Copynumber: 4.1 Consensus size: 41
88264856 GTTATATGAC
* **
88264866 TTTTAGCGGCGTTTTACTAAAAGTGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACTAAAAGCGCCGCTAATGCTCTTAT
*
88264907 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTC-TAT
1 TTTTAGCGGCGTTTTACTAAAAGCGCCGCTAATGCTCTTAT
* **
88264947 TTTTAGCGGCGTTTTTTTACTAAAA-CGCCGTTGTTGCT-TTAT
1 TTTTAGCGGCG---TTTTACTAAAAGCGCCGCTAATGCTCTTAT
* ** * *
88264989 TTTTAGCGGCATTTTTTTAAAA-CGCCACTATTGCTCTGTAT
1 TTTTAGCGGCGTTTTACTAAAAGCGCCGCTAATGCTCT-TAT
88265030 TTT
1 TTT
88265033 AAAAATTTTG
Statistics
Matches: 106, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
39 19 0.18
40 13 0.12
41 41 0.39
42 23 0.22
43 10 0.09
ACGTcount: A:0.20, C:0.20, G:0.19, T:0.41
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACTAAAAGCGCCGCTAATGCTCTTAT
Found at i:88265072 original size:12 final size:12
Alignment explanation
Indices: 88265057--88265082 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
88265047 GTTTTTTGAT
88265057 AAAACGCCGCTA
1 AAAACGCCGCTA
88265069 AAAACGCCGCTA
1 AAAACGCCGCTA
88265081 AA
1 AA
88265083 GCCCTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:88268866 original size:26 final size:27
Alignment explanation
Indices: 88268800--88268976 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
88268790 ATATTGAGCC
* *
88268800 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
88268827 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
88268854 CG-ACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
88268881 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
88268908 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
88268935 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
88268962 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
88268977 GTACAATTTA
Statistics
Matches: 127, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
26 19 0.15
27 88 0.69
28 20 0.16
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:88268889 original size:54 final size:54
Alignment explanation
Indices: 88268800--88268976 Score: 196
Period size: 54 Copynumber: 3.3 Consensus size: 54
88268790 ATATTGAGCC
* * * * *
88268800 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* ** * *
88268854 CG-ACACTTAGTGCTACATAGTCAGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCA-ACTCGCACACTTAGTGCAACATAGTCAAAT
* ** *
88268908 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
88268962 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
88268977 GTACAATTTA
Statistics
Matches: 102, Mismatches: 17, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
53 18 0.18
54 66 0.65
55 18 0.18
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:88268965 original size:81 final size:81
Alignment explanation
Indices: 88268821--88268975 Score: 215
Period size: 81 Copynumber: 1.9 Consensus size: 81
88268811 TGCTATATAA
* * *
88268821 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGACACTTAGTGCTACATAGTCAGACTCGCAC
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGACACTTAGTGCAACATAGTCAGAATCGCAC
88268886 ACTTAGTGCCGCATGG
66 ACTTAGTGCCGCATGG
* * **
88268902 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTC-GAATCGC
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCG-ACACTTAGTGCAACATAGTCAGAATCGC
88268965 ACACTTAGTGC
64 ACACTTAGTGC
88268976 TGTACAATTT
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
80 1 0.02
81 45 0.69
82 19 0.29
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGACACTTAGTGCAACATAGTCAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:88281401 original size:36 final size:37
Alignment explanation
Indices: 88281359--88281476 Score: 150
Period size: 38 Copynumber: 3.2 Consensus size: 37
88281349 TTTAAGCTTA
* *
88281359 GATATAATACCA-AC-TAGTCCTGCGGGATTTAACCCG
1 GATATAATACCAGACGAAG-CCTGCGAGATTTAACCCG
88281395 GATATAATACCAGTACGAAGCCTGCGAGATTTAACCCG
1 GATATAATACCAG-ACGAAGCCTGCGAGATTTAACCCG
* * *
88281433 GATATAGTACCAGTACGAAGCCTGCAAGATTTAACCTG
1 GATATAATACCAG-ACGAAGCCTGCGAGATTTAACCCG
88281471 GATATA
1 GATATA
88281477 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
36 12 0.16
38 60 0.81
39 2 0.03
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (37 bp):
GATATAATACCAGACGAAGCCTGCGAGATTTAACCCG
Found at i:88281419 original size:38 final size:38
Alignment explanation
Indices: 88281377--88281476 Score: 164
Period size: 38 Copynumber: 2.6 Consensus size: 38
88281367 ACCAACTAGT
*
88281377 CCTGCGGGATTTAACCCGGATATAATACCAGTACGAAG
1 CCTGCGAGATTTAACCCGGATATAATACCAGTACGAAG
*
88281415 CCTGCGAGATTTAACCCGGATATAGTACCAGTACGAAG
1 CCTGCGAGATTTAACCCGGATATAATACCAGTACGAAG
* *
88281453 CCTGCAAGATTTAACCTGGATATA
1 CCTGCGAGATTTAACCCGGATATA
88281477 TTTCCAGCAT
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 58 1.00
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.23
Consensus pattern (38 bp):
CCTGCGAGATTTAACCCGGATATAATACCAGTACGAAG
Found at i:88283927 original size:40 final size:39
Alignment explanation
Indices: 88283704--88283965 Score: 302
Period size: 39 Copynumber: 6.6 Consensus size: 39
88283694 TTGAATGATG
*
88283704 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
88283742 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
*
88283783 TCTGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
88283822 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
88283861 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
88283900 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTAAT
* * *
88283939 AACCGGGCTATGTCCCGAAGGAATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
88283966 AACGAGGAGC
Statistics
Matches: 197, Mismatches: 19, Indels: 13
0.86 0.08 0.06
Matches are distributed among these distances:
39 130 0.66
40 55 0.28
41 11 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:88283930 original size:118 final size:120
Alignment explanation
Indices: 88283704--88283965 Score: 335
Period size: 118 Copynumber: 2.2 Consensus size: 120
88283694 TTGAATGATG
* *
88283704 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTGACAATATCCGGACTAAGACCCGAAGGCATT
*
88283767 TGTGCGAGATACTAATTCTGGGCTAAGCCCGAAGGCATTTGTGCGAGA-TACTA-A
66 TGTGCGAGATACTAAATCTGGGCTAAGCCCGAAGGCATTTGTGCGA-ATTACTATA
*
88283821 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGAT-ACTAAT-TCCGGGCTAAG-CCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TGAC-AATATCCGGACTAAGACCCGAAGGC
* *
88283881 ATTTGTGCGAGTTACTAAATCTGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATA
63 ATTTGTGCGAGATACTAAATCTGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACTATA
* * *
88283940 ACCGGGCTATGTCCCGAAGGAATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
88283966 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
117 45 0.35
118 58 0.46
119 24 0.19
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTGACAATATCCGGACTAAGACCCGAAGGCATT
TGTGCGAGATACTAAATCTGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTATA
Found at i:88292123 original size:40 final size:40
Alignment explanation
Indices: 88291892--88292152 Score: 308
Period size: 39 Copynumber: 6.7 Consensus size: 40
88291882 TTGAATGATG
* *
88291892 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAA
* *
88291930 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
*
88291970 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* *
88292009 TCCGGGCTAAG-CCCGAAGGCATTTGTACGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
*
88292048 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* *
88292087 TCCGGGTTAAGTCCCGAAGGCGTTTGTGCGA-ATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTA-AA
*
88292128 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
88292153 AACGAGGAGC
Statistics
Matches: 199, Mismatches: 15, Indels: 16
0.87 0.07 0.07
Matches are distributed among these distances:
38 18 0.09
39 114 0.57
40 64 0.32
41 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:88308815 original size:55 final size:55
Alignment explanation
Indices: 88308731--88308838 Score: 207
Period size: 55 Copynumber: 2.0 Consensus size: 55
88308721 GCTTTGGCTT
88308731 TACTCTCAAGATTATGGTTATTTAGGTAAGTAACACTTGTAACTACATCAAATGA
1 TACTCTCAAGATTATGGTTATTTAGGTAAGTAACACTTGTAACTACATCAAATGA
*
88308786 TACTCTCAAGATTATGGTTTTTTAGGTAAGTAACACTTGTAACTACATCAAAT
1 TACTCTCAAGATTATGGTTATTTAGGTAAGTAACACTTGTAACTACATCAAAT
88308839 TATTTATCCA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 52 1.00
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36
Consensus pattern (55 bp):
TACTCTCAAGATTATGGTTATTTAGGTAAGTAACACTTGTAACTACATCAAATGA
Found at i:88310853 original size:39 final size:40
Alignment explanation
Indices: 88310699--88310920 Score: 247
Period size: 40 Copynumber: 5.6 Consensus size: 40
88310689 GCTACTCGTT
* * *
88310699 CAAATGCCTTCGGGACATAACCCGG-TTATAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
88310739 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
88310779 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
88310819 CCAATGCCTTCAGG-CTTAGCCCGGAATTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
88310858 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
88310899 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
88310921 AGACATCATT
Statistics
Matches: 158, Mismatches: 19, Indels: 10
0.84 0.10 0.05
Matches are distributed among these distances:
38 2 0.01
39 32 0.20
40 111 0.70
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:88313729 original size:42 final size:42
Alignment explanation
Indices: 88313663--88313774 Score: 113
Period size: 42 Copynumber: 2.7 Consensus size: 42
88313653 GAGATTTCGA
* * *
88313663 GTAAGACCAT-GTCTGGAACATGGCATTGATGTGAGAAT-C-GT
1 GTAAGACCATAG-CTGGGATATGGCATTGATGTGAG-ATCCAAT
* **
88313704 GTAAGACCATAGCTGGGCTATTGGCATCAATGTGAGATCCAAT
1 GTAAGACCATAGCTGGGATA-TGGCATTGATGTGAGATCCAAT
*
88313747 GTAAGACCATATCTGGGATATGGCATTG
1 GTAAGACCATAGCTGGGATATGGCATTG
88313775 GTATGATTCT
Statistics
Matches: 57, Mismatches: 10, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
41 17 0.30
42 21 0.37
43 19 0.33
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (42 bp):
GTAAGACCATAGCTGGGATATGGCATTGATGTGAGATCCAAT
Found at i:88314663 original size:30 final size:30
Alignment explanation
Indices: 88314629--88314701 Score: 76
Period size: 30 Copynumber: 2.4 Consensus size: 30
88314619 TTTGTTGCAT
* * **
88314629 AAGTGTAAATACT-CAAAATTTGAGGGGTTA
1 AAGTGTAAATA-TGAAAAATTTGAAGGACTA
*
88314659 AAGTGCAAATATGAAAAATTTGAAGGACTA
1 AAGTGTAAATATGAAAAATTTGAAGGACTA
88314689 ATAGTGTAAATAT
1 A-AGTGTAAATAT
88314702 TTTAATGGTG
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
29 1 0.03
30 24 0.69
31 10 0.29
ACGTcount: A:0.45, C:0.05, G:0.21, T:0.29
Consensus pattern (30 bp):
AAGTGTAAATATGAAAAATTTGAAGGACTA
Found at i:88316461 original size:27 final size:27
Alignment explanation
Indices: 88316430--88316607 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
88316420 TAAATTGTAC
88316430 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
88316457 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
88316483 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
88316511 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
88316539 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
88316566 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
88316593 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
88316608 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:88316544 original size:82 final size:81
Alignment explanation
Indices: 88316431--88316586 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
88316421 AAATTGTACA
* *
88316431 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
88316495 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
88316512 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
88316577 TGCGAGTTGA
65 TGCGAATTGA
88316587 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:88316598 original size:82 final size:81
Alignment explanation
Indices: 88316427--88316607 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
88316417 GATTAAATTG
* *
88316427 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
88316492 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
88316508 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
88316572 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
88316590 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
88316608 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:88324510 original size:27 final size:27
Alignment explanation
Indices: 88324479--88324656 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
88324469 TAAATTGTAC
88324479 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
88324506 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
88324532 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
88324560 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
88324588 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
88324615 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
88324642 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
88324657 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:88324593 original size:82 final size:81
Alignment explanation
Indices: 88324480--88324635 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
88324470 AAATTGTACA
* *
88324480 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
88324544 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
88324561 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
88324626 TGCGAGTTGA
65 TGCGAATTGA
88324636 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:88324647 original size:82 final size:81
Alignment explanation
Indices: 88324476--88324656 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
88324466 GATTAAATTG
* *
88324476 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
88324541 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
88324557 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
88324621 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
88324639 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
88324657 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:88326560 original size:30 final size:29
Alignment explanation
Indices: 88326492--88326563 Score: 81
Period size: 30 Copynumber: 2.4 Consensus size: 29
88326482 TTTGGTGCAC
**
88326492 AAGAGTAAATACTCAAAACTTGAAGGGTTA
1 AAGAGTAAATA-TCAAAACTTGAAGGACTA
* * *
88326522 AAGTGTAAATATGAAAATTTGAAGGACTA
1 AAGAGTAAATATCAAAACTTGAAGGACTA
88326551 ATAGAGTAAATAT
1 A-AGAGTAAATAT
88326564 TTTAAGGATG
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
29 15 0.43
30 20 0.57
ACGTcount: A:0.49, C:0.06, G:0.19, T:0.26
Consensus pattern (29 bp):
AAGAGTAAATATCAAAACTTGAAGGACTA
Found at i:88328389 original size:33 final size:33
Alignment explanation
Indices: 88328334--88328489 Score: 86
Period size: 33 Copynumber: 4.7 Consensus size: 33
88328324 AATTGACGGA
* * * *
88328334 TAAGACCATGGTTGGGCCATGGCAATATATGTG
1 TAAGACCATAGCTAGGCTATGGCAATATATGTG
*
88328367 TAAGACCATAGCTAGGCTATGGC-ATCATGATG-A
1 TAAGACCATAGCTAGGCTATGGCAAT-AT-ATGTG
* * ** *
88328400 TAAGACCATATCTAGGATATGGCACCACGA-GTG
1 TAAGACCATAGCTAGGCTATGGCAATA-TATGTG
* * * * * *
88328433 CAAGACCATGGCTGGGCCATGGCAATACACGTG
1 TAAGACCATAGCTAGGCTATGGCAATATATGTG
* *
88328466 TAAGACCTTAG-TTGGACTATGGCA
1 TAAGACCATAGCTAGG-CTATGGCA
88328490 TCATACCATA
Statistics
Matches: 91, Mismatches: 25, Indels: 14
0.70 0.19 0.11
Matches are distributed among these distances:
32 7 0.08
33 81 0.89
34 3 0.03
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (33 bp):
TAAGACCATAGCTAGGCTATGGCAATATATGTG
Found at i:88328552 original size:45 final size:45
Alignment explanation
Indices: 88328503--88328620 Score: 173
Period size: 45 Copynumber: 2.6 Consensus size: 45
88328493 TACCATAAAT
*
88328503 GAGTAAGACCATAATTGAAAGACGCTATGGCATCACAATTCAAAC
1 GAGTAAGACCATAGTTGAAAGACGCTATGGCATCACAATTCAAAC
* * * *
88328548 GAGTAAGACCATAGCTGAAAGATGCTATGGCATCACGATTCAAAT
1 GAGTAAGACCATAGTTGAAAGACGCTATGGCATCACAATTCAAAC
* *
88328593 GTGTAAGACCATAGTTGAAAGACACTAT
1 GAGTAAGACCATAGTTGAAAGACGCTAT
88328621 AGAAATATGA
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 64 1.00
ACGTcount: A:0.40, C:0.18, G:0.20, T:0.22
Consensus pattern (45 bp):
GAGTAAGACCATAGTTGAAAGACGCTATGGCATCACAATTCAAAC
Found at i:88328656 original size:46 final size:45
Alignment explanation
Indices: 88328596--88328798 Score: 219
Period size: 46 Copynumber: 4.4 Consensus size: 45
88328586 TTCAAATGTG
* * * *
88328596 TAAGACCATAGTTGAAAGACACTATAGAAATATGAT-GAGAAATGAA
1 TAAGACCATGGTTGAAAGATACCAT-GAAACATGATAG-GAAATGAA
* * *
88328642 TAAGACTATGGTTGAAAGATACCATGACAACATGACAGGAAATAAA
1 TAAGACCATGGTTGAAAGATACCATGA-AACATGATAGGAAATGAA
* *
88328688 TAAGACCATGGTTGAAAGATACCATGGCAGCATGATAGGAAATGAA
1 TAAGACCATGGTTGAAAGATACCAT-GAAACATGATAGGAAATGAA
* * * *
88328734 TAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAG
1 TAAGACCATGGTTGAAAGATACCAT-GAAACATGATAGGAAATGAA
**
88328780 TAAGACCATTCTTGAAAGA
1 TAAGACCATGGTTGAAAGA
88328799 GACTATGGCA
Statistics
Matches: 136, Mismatches: 18, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
45 2 0.01
46 132 0.97
47 2 0.01
ACGTcount: A:0.45, C:0.13, G:0.22, T:0.20
Consensus pattern (45 bp):
TAAGACCATGGTTGAAAGATACCATGAAACATGATAGGAAATGAA
Found at i:88328807 original size:46 final size:46
Alignment explanation
Indices: 88328635--88328831 Score: 243
Period size: 46 Copynumber: 4.3 Consensus size: 46
88328625 ATATGATGAG
* * *
88328635 AAATGAATAAGACTATGGTTGAAAGATACCATGACAACATGACAGG
1 AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
* * * *
88328681 AAATAAATAAGACCATGGTTGAAAGATACCATGGCAGCATGATAGG
1 AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
88328727 AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
1 AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
* ** * * * *
88328773 AAATGAGTAAGACCATTCTTGAAAGAGACTATGGCATCATGTC-GA
1 AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
* *
88328818 AGATAAATAAGACC
1 AAATGAATAAGACC
88328832 CTGGATGGGA
Statistics
Matches: 132, Mismatches: 19, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
45 13 0.10
46 119 0.90
ACGTcount: A:0.44, C:0.14, G:0.22, T:0.20
Consensus pattern (46 bp):
AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
Found at i:88328807 original size:92 final size:92
Alignment explanation
Indices: 88328589--88328813 Score: 281
Period size: 92 Copynumber: 2.4 Consensus size: 92
88328579 ATCACGATTC
* * * * *
88328589 AAATGTGTAAGACCATAGTTGAAAGACACTATAGAAATATGATGAGAAATGAATAAGACTATGGT
1 AAATGAGTAAGACCATAGTTGAAAGACACTATGGCAACATGATGAGAAATGAATAAGACCATGGT
*
88328654 TGAAAGATACCATGACAACATGACAGG
66 TGAAAGATACCATGACAACATGACAGA
* * * * * *
88328681 AAATAAATAAGACCATGGTTGAAAGATACCATGGCAGCATGAT-AGGAAATGAATAAGACCATGG
1 AAATGAGTAAGACCATAGTTGAAAGACACTATGGCAACATGATGA-GAAATGAATAAGACCATGG
*
88328745 TTGAAAGATACCATGGCAACATGACAGA
65 TTGAAAGATACCATGACAACATGACAGA
** * *
88328773 AAATGAGTAAGACCATTCTTGAAAGAGACTATGGCATCATG
1 AAATGAGTAAGACCATAGTTGAAAGACACTATGGCAACATG
88328814 TCGAAGATAA
Statistics
Matches: 112, Mismatches: 20, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
91 1 0.01
92 111 0.99
ACGTcount: A:0.44, C:0.13, G:0.22, T:0.21
Consensus pattern (92 bp):
AAATGAGTAAGACCATAGTTGAAAGACACTATGGCAACATGATGAGAAATGAATAAGACCATGGT
TGAAAGATACCATGACAACATGACAGA
Found at i:88329537 original size:13 final size:13
Alignment explanation
Indices: 88329521--88329554 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
88329511 CAAGGACATG
88329521 GGCGTGTGCGCAA
1 GGCGTGTGCGCAA
88329534 GGCGTGTGCGCAA
1 GGCGTGTGCGCAA
88329547 GGCGTGTG
1 GGCGTGTG
88329555 AAGTCTGCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.12, C:0.21, G:0.50, T:0.18
Consensus pattern (13 bp):
GGCGTGTGCGCAA
Found at i:88337729 original size:27 final size:27
Alignment explanation
Indices: 88337688--88337741 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
88337678 TGTCATGTGA
* *
88337688 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
88337715 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
88337742 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:88343578 original size:27 final size:27
Alignment explanation
Indices: 88343537--88343590 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
88343527 TGTCATGTGA
* *
88343537 AATTGAATGACAAATTATTGTTACATG
1 AATTGAATGACAAATTACTATTACATG
**
88343564 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGACAAATTACTATTACATG
88343591 GGTTGTACGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.41, C:0.07, G:0.13, T:0.39
Consensus pattern (27 bp):
AATTGAATGACAAATTACTATTACATG
Found at i:88343914 original size:49 final size:50
Alignment explanation
Indices: 88343844--88344082 Score: 286
Period size: 49 Copynumber: 4.8 Consensus size: 50
88343834 TGAGGTCATG
* *
88343844 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTAGGTCACA
* * * *
88343893 TGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAACTTCA-ATCACA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-TT-AGGTCACA
* * ** *
88343944 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTAGGTCACA
* * ** *
88343994 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACTGGATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTAGGTCACA
*
88344043 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA
88344083 CCTTGTCTAC
Statistics
Matches: 159, Mismatches: 27, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
49 78 0.49
50 44 0.28
51 37 0.23
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTAGGTCACA
Found at i:88344080 original size:99 final size:100
Alignment explanation
Indices: 88343844--88344082 Score: 320
Period size: 101 Copynumber: 2.4 Consensus size: 100
88343834 TGAGGTCATG
* *
88343844 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGTG
*
88343909 TAGGCTACTATGCGTACCCGATAACTTCAATCACA
66 TAGGCTACTACGCGTACCCGATAACTTCAATCACA
* * ** *
88343944 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT-GGTCACATGTGTAGTACTAAGT
* ** ** *
88344009 GTAGGCTACTACGTGTACTGGATAA-TT-GGTCGCA
65 GTAGGCTACTACGCGTACCCGATAACTTCAATCACA
*
88344043 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA
88344083 CCTTGTCTAC
Statistics
Matches: 119, Mismatches: 19, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
99 39 0.33
100 39 0.33
101 41 0.34
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (100 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCACATGTGTAGTACTAAGTG
TAGGCTACTACGCGTACCCGATAACTTCAATCACA
Found at i:88347153 original size:24 final size:24
Alignment explanation
Indices: 88347132--88347179 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
88347122 TTCGTATTCT
88347132 GTGATAGAAATATGGCCCTATTTAA
1 GTGATAGAAATATGGCCCTATTT-A
**
88347157 GTTCTAGAAATATGGCCCTATTT
1 GTGATAGAAATATGGCCCTATTT
88347180 TATTAATGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (24 bp):
GTGATAGAAATATGGCCCTATTTA
Found at i:88347792 original size:19 final size:19
Alignment explanation
Indices: 88347755--88347794 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
88347745 TGAAAATGTG
*
88347755 TAAGTTATGCCTATAAATT
1 TAAGTTATGCCTACAAATT
*
88347774 TAAGTTATGCCTACGAATT
1 TAAGTTATGCCTACAAATT
88347793 TA
1 TA
88347795 TGATGACACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.40
Consensus pattern (19 bp):
TAAGTTATGCCTACAAATT
Found at i:88349468 original size:17 final size:17
Alignment explanation
Indices: 88349446--88349493 Score: 50
Period size: 17 Copynumber: 3.0 Consensus size: 17
88349436 ATACTTTTCA
88349446 CATACATTCAATCATTT
1 CATACATTCAATCATTT
*
88349463 CATACAATC-ATCA-TT
1 CATACATTCAATCATTT
88349478 CA-A-ATTCAATCTATTT
1 CATACATTCAATC-ATTT
88349494 ATCCCTTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
13 3 0.12
14 4 0.15
15 5 0.19
16 6 0.23
17 8 0.31
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (17 bp):
CATACATTCAATCATTT
Found at i:88350588 original size:44 final size:44
Alignment explanation
Indices: 88350527--88350627 Score: 168
Period size: 44 Copynumber: 2.3 Consensus size: 44
88350517 TAAAACATAG
* *
88350527 AAAAAT-AAACAAATAAGCTATAAAGCTTAGTAACTTCGTATGT
1 AAAAATGAAATAATTAAGCTATAAAGCTTAGTAACTTCGTATGT
*
88350570 AAAAATGAAATAATTAAGCTATAAAGCTTAGTAAGTTCGTATGT
1 AAAAATGAAATAATTAAGCTATAAAGCTTAGTAACTTCGTATGT
88350614 AAAAATGAAATAAT
1 AAAAATGAAATAAT
88350628 CACATCATTC
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
43 6 0.11
44 48 0.89
ACGTcount: A:0.50, C:0.08, G:0.13, T:0.29
Consensus pattern (44 bp):
AAAAATGAAATAATTAAGCTATAAAGCTTAGTAACTTCGTATGT
Found at i:88353415 original size:27 final size:27
Alignment explanation
Indices: 88353324--88353436 Score: 88
Period size: 27 Copynumber: 4.1 Consensus size: 27
88353314 AGCATGGCTG
* * * *
88353324 CCAGAACAGATA-ATGTGACAAAGTCA
1 CCAGATCAGATATATGTGGCAGAGCCA
* *
88353350 CCAGATACAGATAGT-CGTGGCAGAGCTA
1 CCAGAT-CAGATA-TATGTGGCAGAGCCA
*
88353378 CTAGAAT-AGATATATGTGGCAGAGCCA
1 CCAG-ATCAGATATATGTGGCAGAGCCA
* *
88353405 CCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGATCAGAT-ATATGTGGCAGAGCCA
88353433 CCAG
1 CCAG
88353437 GACGCTTCCT
Statistics
Matches: 68, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
26 8 0.12
27 29 0.43
28 29 0.43
29 2 0.03
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.19
Consensus pattern (27 bp):
CCAGATCAGATATATGTGGCAGAGCCA
Found at i:88361210 original size:28 final size:26
Alignment explanation
Indices: 88361155--88361264 Score: 121
Period size: 27 Copynumber: 4.0 Consensus size: 26
88361145 AGCATGGCTG
* *
88361155 CTAGAACAGATAATGTGACAGAGTCA
1 CTAGAACAGATAATGTGGCAGAGCCA
*
88361181 CTAGATACTGATAATCGTGGCAGAGCCA
1 CTAGA-ACAGATAAT-GTGGCAGAGCCA
88361209 CTAGAACAGATATATGTGGCAGAGCCA
1 CTAGAACAGATA-ATGTGGCAGAGCCA
* * *
88361236 CCAGATCAGATAATTTGTGGCATAGCCA
1 CTAGAACAGATAA--TGTGGCAGAGCCA
88361264 C
1 C
88361265 CAGGATGCTT
Statistics
Matches: 72, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
26 6 0.08
27 36 0.50
28 30 0.42
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (26 bp):
CTAGAACAGATAATGTGGCAGAGCCA
Found at i:88361263 original size:55 final size:54
Alignment explanation
Indices: 88361155--88361264 Score: 141
Period size: 55 Copynumber: 2.0 Consensus size: 54
88361145 AGCATGGCTG
* * *
88361155 CTAGAACAGATAATGTGACAGAGTCACTAGATACTGATAATCGTGGCAGAGCCA
1 CTAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
88361209 CTAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTTGTGGCATAGCCA
1 CTAGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAA-TCGTGGCAGAGCCA
88361264 C
1 C
88361265 CAGGATGCTT
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
54 18 0.38
55 30 0.62
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (54 bp):
CTAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:88365642 original size:46 final size:47
Alignment explanation
Indices: 88365536--88365666 Score: 133
Period size: 46 Copynumber: 2.8 Consensus size: 47
88365526 CCACATTATC
* * *
88365536 AGAGCTAGTGTAAGACCATGTCTTGGACATGGCATCAGCATTGAGACG
1 AGAGCCAGTGTAAGA-CATGTCTAGGACATGGCATCAGCATCGAGACG
* * * * *
88365584 AGTGCTACTGTAAGACATGTCTAGGACA-GGCTTCAGCCTCGAGACG
1 AGAGCCAGTGTAAGACATGTCTAGGACATGGCATCAGCATCGAGACG
* *
88365630 TA-AGCCAGTGTAAGACATGTTTGGGACAT-GCATCAGC
1 -AGAGCCAGTGTAAGACATGTCTAGGACATGGCATCAGC
88365667 TACGGATACG
Statistics
Matches: 69, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
46 43 0.62
47 13 0.19
48 13 0.19
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (47 bp):
AGAGCCAGTGTAAGACATGTCTAGGACATGGCATCAGCATCGAGACG
Found at i:88368418 original size:120 final size:119
Alignment explanation
Indices: 88368196--88368458 Score: 316
Period size: 120 Copynumber: 2.2 Consensus size: 119
88368186 TCCTCGTTCA
* * **
88368196 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAACAACTCACACAATGCCTTCGGGACTTAACCCGGATT
* * * *
88368261 TAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTA-ACAAC-TCGCAC
66 TAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATATAC-ACTTAGCAC
* *
88368314 GAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAACAACTCACAC-AATGCCTTCGGGACTTAACCCGGA
** * ** *
88368379 TTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
64 TTTAACAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATATATACACTTAGCAC
*
88368435 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
88368459 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
119 36 0.30
120 80 0.66
121 6 0.05
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAACAACTCACACAATGCCTTCGGGACTTAACCCGGATT
TAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATATACACTTAGCAC
Found at i:88368419 original size:40 final size:40
Alignment explanation
Indices: 88368196--88368405 Score: 314
Period size: 40 Copynumber: 5.3 Consensus size: 40
88368186 TCCTCGTTCA
* * * ** *
88368196 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
88368235 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
88368275 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
88368315 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
88368355 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
88368395 AAGGCCTTCGG
1 AATGCCTTCGG
88368406 ATCTTAGTCC
Statistics
Matches: 159, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 33 0.21
40 126 0.79
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:88368442 original size:80 final size:80
Alignment explanation
Indices: 88368199--88368458 Score: 267
Period size: 80 Copynumber: 3.3 Consensus size: 80
88368189 TCGTTCAAAT
* * * ** * * *
88368199 GCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACTTAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* *
88368263 ACAACTCGCACGAAT
66 ACAACTAGCACGAAA
* * *
88368278 GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
* *
88368343 ACAACTCGCACGAAT
66 ACAACTAGCACGAAA
** * **
88368358 GCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGATAT
1 GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGGATAT
*
88368422 ATTC-ACTTAGCAC-AAA
65 A-ACAAC-TAGCACGAAA
*
88368438 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
88368459 CAGCATTCAA
Statistics
Matches: 159, Mismatches: 18, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
79 33 0.21
80 120 0.75
81 6 0.04
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTTAACCCGGATATA
ACAACTAGCACGAAA
Found at i:88368467 original size:41 final size:41
Alignment explanation
Indices: 88368390--88368467 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
88368380 TTAGTATCTC
* * *
88368390 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
88368431 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
88368468 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:88383060 original size:18 final size:18
Alignment explanation
Indices: 88383034--88383074 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
88383024 TTATTACTGG
*
88383034 TACTTTTACTCTCTCTGA
1 TACTATTACTCTCTCTGA
88383052 TACTATTACTCTCTCTGA
1 TACTATTACTCTCTCTGA
88383070 TACTA
1 TACTA
88383075 AAGTTATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.22, C:0.27, G:0.05, T:0.46
Consensus pattern (18 bp):
TACTATTACTCTCTCTGA
Found at i:88385779 original size:46 final size:46
Alignment explanation
Indices: 88385710--88385836 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
88385700 TATATATACA
* * *
88385710 CATCTCATACATATCTCACATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
* * *
88385756 CGTCTCATACACGTTTCGCATTAGCCATTCGACTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
88385802 CATCTCATACACATTTCGCATTAGCCATTCGGCTT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTT
88385837 CGCCACTTAT
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 72 1.00
ACGTcount: A:0.24, C:0.32, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
Found at i:88385912 original size:47 final size:47
Alignment explanation
Indices: 88385860--88386617 Score: 1268
Period size: 47 Copynumber: 16.1 Consensus size: 47
88385850 CACTTCCACG
* **
88385860 TTCATCACATTGGCCAATCTACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
88385907 TTCATCACATT-GCCAATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCC-ATTCGGCCTTATCACATATATGCATGTTCACA
* * * *
88385954 TTCATCACATTGGCGATTCGACCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
88386001 TTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
88386048 TTCATCATATTGGCCATTTGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
88386095 TTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
88386142 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
88386189 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
88386236 TTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
88386283 TTCATCACATTGGCCATTCAGCCTTATCAGC-TATATGCATGTTAACA
1 TTCATCACATTGGCCATTCGGCCTTATCA-CATATATGCATGTTCACA
*
88386330 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCGTGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
88386377 TTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
88386424 TTCATCACATTGGCCACTCGGCCTTATCACCTATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * *
88386471 TTCATCACATTGGTCATTCGGCCTTATCACGTATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
88386518 TTCATCACATTGGCCATTCAGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
88386565 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
88386612 TTCATC
1 TTCATC
88386618 TCATAAAATC
Statistics
Matches: 665, Mismatches: 42, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
46 4 0.01
47 658 0.99
48 3 0.00
ACGTcount: A:0.26, C:0.27, G:0.13, T:0.34
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:88386008 original size:25 final size:25
Alignment explanation
Indices: 88385885--88386009 Score: 72
Period size: 24 Copynumber: 5.2 Consensus size: 25
88385875 AATCTACCTT
* *
88385885 ATCACATATATGCATGTTCACATTC
1 ATCACACATATGCAAGTTCACATTC
* *
88385910 AT--CACAT-TGCCAA-TTCGGCCTT-
1 ATCACACATATG-CAAGTTC-ACATTC
* *
88385932 ATCACATATATGCATGTTCACATTC
1 ATCACACATATGCAAGTTCACATTC
* *
88385957 AT--CACAT-TGGCGA-TTCGACCTT-
1 ATCACACATAT-GCAAGTTC-ACATTC
88385979 ATCACACATATGCAAGTTCACATTC
1 ATCACACATATGCAAGTTCACATTC
88386004 ATCACA
1 ATCACA
88386010 TTGGCCATTC
Statistics
Matches: 72, Mismatches: 14, Indels: 28
0.63 0.12 0.25
Matches are distributed among these distances:
22 13 0.18
23 19 0.26
24 21 0.29
25 19 0.26
ACGTcount: A:0.30, C:0.27, G:0.10, T:0.32
Consensus pattern (25 bp):
ATCACACATATGCAAGTTCACATTC
Found at i:88386546 original size:22 final size:22
Alignment explanation
Indices: 88386521--88386596 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
88386511 GTTCATATTC
88386521 ATCACATTGGCCATTCAGCCTT
1 ATCACATTGGCCATTCAGCCTT
* *
88386543 ATCACATATATG-CATGTTCA-CATT
1 ATCACAT-T-GGCCA--TTCAGCCTT
*
88386567 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCAGCCTT
88386590 ATCACAT
1 ATCACAT
88386597 ATATGCATGT
Statistics
Matches: 42, Mismatches: 5, Indels: 14
0.69 0.08 0.23
Matches are distributed among these distances:
22 17 0.40
23 7 0.17
24 7 0.17
25 11 0.26
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCAGCCTT
Found at i:88390236 original size:40 final size:40
Alignment explanation
Indices: 88390171--88390607 Score: 624
Period size: 40 Copynumber: 10.9 Consensus size: 40
88390161 GATTACACAT
* * * * **
88390171 CACCGGCACGAATTCCCTTCAGGACTTAGCCCGGATGTAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAA
*
88390211 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAA
* * *
88390251 CACTAGCCCGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAA
*
88390291 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAA
* * *
88390331 CACTAGCACGAATGCTCTTCAGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAA
* * *
88390371 CATCAGCACGAGTGCTCTTCGGGACTTAGCCCGGATACAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAA
* * *
88390411 CACTAGCACGAATGCTCTTCAGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAA
*
88390451 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAA
* *
88390491 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAA
* *
88390531 CACCAGCACGAATGCTCTTCAGAACTTAGCCCGGATACATA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA-A
*
88390572 -ACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
88390608 TATATAACTC
Statistics
Matches: 351, Mismatches: 45, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
40 350 1.00
41 1 0.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAA
Found at i:88390300 original size:80 final size:80
Alignment explanation
Indices: 88390167--88390609 Score: 760
Period size: 80 Copynumber: 5.5 Consensus size: 80
88390157 GCCTGATTAC
** * * *
88390167 ACATCACCGGCACGAATTCCCTTCAGGACTTAGCCCGGATGTAACACCAGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCAGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCG
88390232 GGACTTAGCCCGGAT
66 GGACTTAGCCCGGAT
* *
88390247 ACATCACTAGCCCGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCAGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCG
88390312 GGACTTAGCCCGGAT
66 GGACTTAGCCCGGAT
* *
88390327 ACATCACTAGCACGAATGCTCTTCAGGACTTAGCCCGGATATAACATCAGCACGAGTGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCAGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCG
88390392 GGACTTAGCCCGGAT
66 GGACTTAGCCCGGAT
88390407 ACATCACTAGCACGAATGCTCTTCAGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCAGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCG
88390472 GGACTTAGCCCGGAT
66 GGACTTAGCCCGGAT
* *
88390487 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCA
1 ACATCACTAGCACGAATGCTCTTCAGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCG
*
88390552 GAACTTAGCCCGGAT
66 GGACTTAGCCCGGAT
* *
88390567 ACATAACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 ACATCACTAGCACGAATGCTCTTCAGGACTTAGCCCGGATATA
88390610 TATAACTCTC
Statistics
Matches: 346, Mismatches: 17, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 346 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (80 bp):
ACATCACTAGCACGAATGCTCTTCAGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCG
GGACTTAGCCCGGAT
Found at i:88392154 original size:46 final size:46
Alignment explanation
Indices: 88392103--88392257 Score: 283
Period size: 46 Copynumber: 3.4 Consensus size: 46
88392093 ACATATCTCA
88392103 CATTAGCCATTCGGCTTTACCTCATATCCATCTCATACACGTTTCG
1 CATTAGCCATTCGGCTTTACCTCATATCCATCTCATACACGTTTCG
*
88392149 CATTAGCCATTCGGCTTTACCTCATATCCATCTCATACATGTTTCG
1 CATTAGCCATTCGGCTTTACCTCATATCCATCTCATACACGTTTCG
* *
88392195 CATTAGCCATTCGACTTTACCTCATATCCATCTCATACACATTTCG
1 CATTAGCCATTCGGCTTTACCTCATATCCATCTCATACACGTTTCG
88392241 CATTAGCCATTCGGCTT
1 CATTAGCCATTCGGCTT
88392258 CGCCACATAT
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 104 1.00
ACGTcount: A:0.23, C:0.32, G:0.10, T:0.35
Consensus pattern (46 bp):
CATTAGCCATTCGGCTTTACCTCATATCCATCTCATACACGTTTCG
Found at i:88392267 original size:46 final size:46
Alignment explanation
Indices: 88392085--88392257 Score: 274
Period size: 46 Copynumber: 3.8 Consensus size: 46
88392075 TATATATACA
* * * *
88392085 CATCTCACACATATCTCACATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
*
88392131 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
** *
88392177 CATCTCATACATGTTTCGCATTAGCCATTCGACTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
88392223 CATCTCATACACATTTCGCATTAGCCATTCGGCTT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTT
88392258 CGCCACATAT
Statistics
Matches: 117, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 117 1.00
ACGTcount: A:0.24, C:0.32, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
Found at i:88392333 original size:47 final size:47
Alignment explanation
Indices: 88392281--88392803 Score: 902
Period size: 47 Copynumber: 11.1 Consensus size: 47
88392271 CACTTCCACG
** *
88392281 TTCATCACATTGGCCATTCTACCTTATCACAAATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
88392328 TTCATCACATTGGTCATTCGGCCTAATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * * *
88392375 TTCATCATATTGGCCATTTGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
88392422 TTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
88392469 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
88392516 TTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
88392563 TTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
88392610 TTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
88392657 TTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
88392704 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
88392751 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
88392798 TTCATC
1 TTCATC
88392804 TCATAAAATC
Statistics
Matches: 453, Mismatches: 23, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 453 1.00
ACGTcount: A:0.25, C:0.28, G:0.13, T:0.34
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:88392429 original size:25 final size:25
Alignment explanation
Indices: 88392400--88392524 Score: 63
Period size: 23 Copynumber: 5.2 Consensus size: 25
88392390 ATTTGGCCTT
88392400 ATCACACATATGCAAGTTCACATTC
1 ATCACACATATGCAAGTTCACATTC
* * *
88392425 AT--CACAT-TGGCCA-TTCGGCCTT-
1 ATCACACATAT-GCAAGTTC-ACATTC
** *
88392447 ATCACGTATATGCATGTTCACATTC
1 ATCACACATATGCAAGTTCACATTC
* * *
88392472 AT--CACAT-TGGCCA-TTCGGCCTT-
1 ATCACACATAT-GCAAGTTC-ACATTC
88392494 ATCACACATATGCAAGTTCACATTC
1 ATCACACATATGCAAGTTCACATTC
88392519 ATCACA
1 ATCACA
88392525 TTGGCCATTC
Statistics
Matches: 68, Mismatches: 18, Indels: 28
0.60 0.16 0.25
Matches are distributed among these distances:
22 12 0.18
23 19 0.28
24 19 0.28
25 18 0.26
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.30
Consensus pattern (25 bp):
ATCACACATATGCAAGTTCACATTC
Found at i:88400321 original size:27 final size:27
Alignment explanation
Indices: 88400290--88400993 Score: 213
Period size: 27 Copynumber: 26.0 Consensus size: 27
88400280 TTAGTTTACC
*
88400290 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
88400317 AAATTAC-CAAAGTATCCC-CAATTTATA
1 AAATTACTGAAA-TA-CCCTCGATTTGTA
** *
88400344 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
88400371 AAATTA-TCGAAATACCTTC-AGTTTGCA
1 AAATTACT-GAAATACCCTCGA-TTTGTA
*
88400398 AAATTACTAAAATACCCTCGATTTTGTA
1 AAATTACTGAAATACCCTCGA-TTTGTA
* * **
88400426 AAATTACTGAAATACTCTTG-TAAGATA
1 AAATTACTGAAATACCCTCGATTTG-TA
* * ** *
88400453 GAATTAC-CATTTTACCCTCGATTTATA
1 AAATTACTGA-AATACCCTCGATTTGTA
* *** *
88400480 GAATTACCT-TTTTACCCTCGATTTATA
1 AAATTA-CTGAAATACCCTCGATTTGTA
* * *** *
88400507 GAATTACCGTCTTACCCTC-AATTG-A
1 AAATTACTGAAATACCCTCGATTTGTA
* ** **
88400532 CAGAATTAC-CATTTTACCCTCGATTTACA
1 -A-AATTACTGA-AATACCCTCGATTTGTA
* **
88400561 AAATTACTGAAATACCCT-TAGTTTACA
1 AAATTACTGAAATACCCTCGA-TTTGTA
** ***
88400588 AAATTACCAAAATACCCTCGATCAATA
1 AAATTACTGAAATACCCTCGATTTGTA
** *
88400615 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACTGAAATACCCTC-GATTTGTA
* *
88400642 AAATTACTAAAATACCC-CTGGTTTGTA
1 AAATTACTGAAATACCCTC-GATTTGTA
* * *
88400669 AAATTACTAAAATACCCCCTGCTTTGTA
1 AAATTACTGAAATACCCTC-GATTTGTA
* * *
88400697 AAATTACTAAAATACCTTCGACTTGTAA
1 AAATTACTGAAATACCCTCGATTTGT-A
* *
88400725 AAATTACT-AAAGTACCCTCGCTTTATA
1 AAATTACTGAAA-TACCCTCGATTTGTA
* * *** *
88400752 GAATTATTGTTTTACCCTCGATTTATA
1 AAATTACTGAAATACCCTCGATTTGTA
* *** * **
88400779 GAATTACTGTTTTACCCTTGATTTACA
1 AAATTACTGAAATACCCTCGATTTGTA
* *** * *
88400806 AAATTACCGTTTTACCTTCGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* **
88400832 AAATTACTGAAATACCC-CTATAAGGTA
1 AAATTACTGAAATACCCTCGAT-TTGTA
* ** * *
88400859 GAATTACCAAAACACCC-CTAGTTTGTA
1 AAATTACTGAAATACCCTCGA-TTTGTA
** * *
88400886 AAATTACCAAAATACCACT-GGTTTGTG
1 AAATTACTGAAATACC-CTCGATTTGTA
* **
88400913 AAATTACCGAAATACCCTTAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
** **
88400940 AAATTACCAAAATACCC-CTGATTTACA
1 AAATTACTGAAATACCCTC-GATTTGTA
* **
88400967 AAATTACAGAAATACCCTTAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
88400994 GATTTACCAA
Statistics
Matches: 526, Mismatches: 116, Indels: 70
0.74 0.16 0.10
Matches are distributed among these distances:
25 3 0.01
26 31 0.06
27 405 0.77
28 86 0.16
29 1 0.00
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.34
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:88400723 original size:55 final size:53
Alignment explanation
Indices: 88400587--88400741 Score: 168
Period size: 55 Copynumber: 2.8 Consensus size: 53
88400577 CTTAGTTTAC
* ** * *
88400587 AAAATTACCAAAATACCCTCGATCAATAAAATTACCAAAATA-CCCCTGGTTTGT
1 AAAATTACTAAAATA-CCTCGAT-TGTAAAATTACTAAAATACCCCCTGCTTTGT
* *
88400641 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCCCTGCTTTGT
1 AAAATTACTAAAATA--CCTCGATTGTAAAATTACTAAAATACCCCCTGCTTTGT
*
88400696 AAAATTACTAAAATACCTTCGACTTGTAAAAATTACTAAAGTACCC
1 AAAATTACTAAAATACC-TCGA-TTGT-AAAATTACTAAAATACCC
88400742 TCGCTTTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 2 0.02
54 31 0.36
55 36 0.42
56 17 0.20
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (53 bp):
AAAATTACTAAAATACCTCGATTGTAAAATTACTAAAATACCCCCTGCTTTGT
Found at i:88400748 original size:55 final size:54
Alignment explanation
Indices: 88400613--88400741 Score: 170
Period size: 55 Copynumber: 2.4 Consensus size: 54
88400603 CCTCGATCAA
* * **
88400613 TAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCCTGGTTTG
1 TAAAATTACTAAAATACCCCTGCTTTGTAAAATTACTAAAATACCCCTGACTTG
*
88400667 TAAAATTACTAAAATACCCCCTGCTTTGTAAAATTACTAAAATA-CCTTCGACTTG
1 TAAAATTACTAAAATA-CCCCTGCTTTGTAAAATTACTAAAATACCCCT-GACTTG
*
88400722 TAAAAATTACTAAAGTACCC
1 T-AAAATTACTAAAATACCC
88400742 TCGCTTTATA
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
54 18 0.27
55 34 0.52
56 14 0.21
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (54 bp):
TAAAATTACTAAAATACCCCTGCTTTGTAAAATTACTAAAATACCCCTGACTTG
Found at i:88400985 original size:54 final size:54
Alignment explanation
Indices: 88400880--88401010 Score: 181
Period size: 54 Copynumber: 2.4 Consensus size: 54
88400870 ACACCCCTAG
* * *** *
88400880 TTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTTAA
1 TTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAATACCCTTAA
88400934 TTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAATACCCTTAA
1 TTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAATACCCTTAA
* * *
88400988 TTTGTAGATTTACCAAAACACCC
1 TTTGTAAAATTACCAAAATACCC
88401011 TTGTAGGATG
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 68 1.00
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (54 bp):
TTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAATACCCTTAA
Found at i:88401010 original size:27 final size:27
Alignment explanation
Indices: 88400860--88401012 Score: 148
Period size: 27 Copynumber: 5.7 Consensus size: 27
88400850 TATAAGGTAG
* * *
88400860 AATTACCAAAACACCCCTAGTTTGTAA
1 AATTACCAAAATACCCTTAATTTGTAA
** *
88400887 AATTACCAAAATACCAC-TGGTTTGTGA
1 AATTACCAAAATACC-CTTAATTTGTAA
*
88400914 AATTACCGAAATACCCTTAATTTGTAA
1 AATTACCAAAATACCCTTAATTTGTAA
* * **
88400941 AATTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCTTAATTTGTAA
*
88400968 AATTA-CAGAAATACCCTTAATTTGTAG
1 AATTACCA-AAATACCCTTAATTTGTAA
* *
88400995 ATTTACCAAAACACCCTT
1 AATTACCAAAATACCCTT
88401013 GTAGGATGAA
Statistics
Matches: 103, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
26 3 0.03
27 97 0.94
28 3 0.03
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCTTAATTTGTAA
Found at i:88401074 original size:27 final size:27
Alignment explanation
Indices: 88401031--88401104 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
88401021 AAAAGACTAA
*
88401031 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
88401058 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
88401085 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
88401105 TGATGAATAC
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:88401841 original size:20 final size:20
Alignment explanation
Indices: 88401816--88401902 Score: 131
Period size: 20 Copynumber: 4.3 Consensus size: 20
88401806 GATATGATAT
*
88401816 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
88401836 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
88401856 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
*
88401876 AGATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
88401896 ACATGAT
1 ACATGAT
88401903 GTATTCATAA
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
20 59 0.97
21 2 0.03
ACGTcount: A:0.40, C:0.09, G:0.20, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:88402028 original size:52 final size:51
Alignment explanation
Indices: 88401952--88402084 Score: 200
Period size: 52 Copynumber: 2.6 Consensus size: 51
88401942 GAGGAAGTGC
* *
88401952 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTATCA
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGAGCTT-TGCCCCAGTTTACCA
* *
88402004 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGATCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGAGCTTTGCCCCAGTTTACCA
88402055 AAAAGGGCTT-TGCCCCAG-TTATT-AAAAGAG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGAG
88402085 TCTAGGCCTT
Statistics
Matches: 76, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
48 6 0.08
49 5 0.07
50 8 0.11
51 23 0.30
52 34 0.45
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGAGCTTTGCCCCAGTTTACCA
Found at i:88402049 original size:25 final size:26
Alignment explanation
Indices: 88401952--88402082 Score: 180
Period size: 26 Copynumber: 5.2 Consensus size: 26
88401942 GAGGAAGTGC
88401952 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
88401978 AAAAGGGCTTATGCCCCAGTTTATCA
1 AAAAGGGCTTATGCCCCAGTTTATTG
88402004 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
** **
88402030 AAAAGATCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
88402055 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
88402078 AAAAG
1 AAAAG
88402083 AGTCTAGGCC
Statistics
Matches: 93, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
23 5 0.05
24 3 0.03
25 29 0.31
26 56 0.60
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:88402279 original size:42 final size:42
Alignment explanation
Indices: 88402220--88402311 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
88402210 TAGTCTCCCC
* ** *
88402220 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
*
88402262 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
88402304 AAATGGGC
1 AAATGGGC
88402312 CTATGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:88402373 original size:31 final size:30
Alignment explanation
Indices: 88402335--88402413 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 30
88402325 CGTTTACAAT
88402335 AAAGGCTTCAGCCCAGTGAAATGATTTATGA
1 AAAGGCTTC-GCCCAGTGAAATGATTTATGA
*
88402366 AAAGGCTTCGACCCAGTGATATGATTTATGA
1 AAAGGCTTCG-CCCAGTGAAATGATTTATGA
88402397 AAAGGCTTCGGCCCAGT
1 AAAGGCTTC-GCCCAGT
88402414 AACCGTTAAA
Statistics
Matches: 45, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
30 1 0.02
31 43 0.96
32 1 0.02
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (30 bp):
AAAGGCTTCGCCCAGTGAAATGATTTATGA
Found at i:88408016 original size:25 final size:26
Alignment explanation
Indices: 88407988--88408036 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
88407978 ATAAACTATT
* *
88407988 AATAATTCAAT-AAATTGAAATTTTA
1 AATAATTAAATAAAATTAAAATTTTA
88408013 AATAATTAAATAAAATTAAAATTT
1 AATAATTAAATAAAATTAAAATTT
88408037 AGGAGAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (26 bp):
AATAATTAAATAAAATTAAAATTTTA
Found at i:88408037 original size:25 final size:25
Alignment explanation
Indices: 88407988--88408037 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
88407978 ATAAACTATT
* *
88407988 AATAATTCAATAAATTGAAATTTTA
1 AATAATTAAATAAATTGAAAATTTA
88408013 AATAATTAAATAAAATT-AAAATTTA
1 AATAATTAAAT-AAATTGAAAATTTA
88408038 GGAGAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (25 bp):
AATAATTAAATAAATTGAAAATTTA
Found at i:88408216 original size:18 final size:18
Alignment explanation
Indices: 88408189--88408237 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
88408179 ATGTGCGTAC
* *
88408189 GAGCAGGCAGCACCATAG
1 GAGCAAGCAGCACAATAG
* *
88408207 GAGCAAGCAGTAGAATAG
1 GAGCAAGCAGCACAATAG
88408225 GAGCAAGCAGCAC
1 GAGCAAGCAGCAC
88408238 TAGGCACGGG
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.39, C:0.22, G:0.33, T:0.06
Consensus pattern (18 bp):
GAGCAAGCAGCACAATAG
Found at i:88408643 original size:15 final size:15
Alignment explanation
Indices: 88408626--88408654 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
88408616 ATTAAAGATA
88408626 AAAAT-TGATTAAAT
1 AAAATATGATTAAAT
88408640 AAAATATGATTAAAT
1 AAAATATGATTAAAT
88408655 TTTAAACTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (15 bp):
AAAATATGATTAAAT
Found at i:88410054 original size:43 final size:43
Alignment explanation
Indices: 88409993--88410078 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
88409983 AAGTCAATAC
88409993 CCCAAACATCGAATAATTCTACCTCAATGATGTTTGTTCAAGG
1 CCCAAACATCGAATAATTCTACCTCAATGATGTTTGTTCAAGG
*
88410036 CCCAAACATCGAATAATTCTACCTTAATGATGTTTGTTCAAGG
1 CCCAAACATCGAATAATTCTACCTCAATGATGTTTGTTCAAGG
88410079 TATCTCATTT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.31
Consensus pattern (43 bp):
CCCAAACATCGAATAATTCTACCTCAATGATGTTTGTTCAAGG
Found at i:88427514 original size:8 final size:8
Alignment explanation
Indices: 88427501--88427526 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
88427491 CATCACATAC
88427501 TTACACAA
1 TTACACAA
88427509 TTACACAA
1 TTACACAA
88427517 TTACACAA
1 TTACACAA
88427525 TT
1 TT
88427527 CATGCAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (8 bp):
TTACACAA
Found at i:88442202 original size:29 final size:28
Alignment explanation
Indices: 88442114--88442210 Score: 92
Period size: 29 Copynumber: 3.5 Consensus size: 28
88442104 ATATTGGGTT
* * *
88442114 CGCACACATAGTGCT-T-AATATAAACG
1 CGCACACTTAGTGCTGTCAATTTAAACC
* * *
88442140 CGCACACTTAGTTCATG-CACTTTAAACT
1 CGCACACTTAGTGC-TGTCAATTTAAACC
*
88442168 CACACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTGT-CAATTTAAACC
88442197 CGCACACTTAGTGC
1 CGCACACTTAGTGC
88442211 CAATCTCATG
Statistics
Matches: 56, Mismatches: 10, Indels: 7
0.77 0.14 0.10
Matches are distributed among these distances:
26 12 0.21
27 3 0.05
28 19 0.34
29 22 0.39
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTGTCAATTTAAACC
Found at i:88446633 original size:15 final size:15
Alignment explanation
Indices: 88446613--88446643 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
88446603 TAAACCCTAT
88446613 AATTCTTCAGGAAAA
1 AATTCTTCAGGAAAA
88446628 AATTCTTCAGGAAAA
1 AATTCTTCAGGAAAA
88446643 A
1 A
88446644 CATCCGGGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.13, G:0.13, T:0.26
Consensus pattern (15 bp):
AATTCTTCAGGAAAA
Found at i:88505854 original size:15 final size:15
Alignment explanation
Indices: 88505821--88505893 Score: 92
Period size: 15 Copynumber: 4.9 Consensus size: 15
88505811 TATGATATTG
**
88505821 TATCTTGGATTTCCG
1 TATCTTGGATTTCTT
88505836 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
**
88505851 TATCTAAGATTTCTT
1 TATCTTGGATTTCTT
*
88505866 TATCTTGGACTTCTT
1 TATCTTGGATTTCTT
*
88505881 TATCTTGGTTTTC
1 TATCTTGGATTTC
88505894 ATGTCATATC
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 49 1.00
ACGTcount: A:0.15, C:0.16, G:0.14, T:0.55
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:88514375 original size:48 final size:48
Alignment explanation
Indices: 88514333--88514651 Score: 370
Period size: 48 Copynumber: 6.6 Consensus size: 48
88514323 CATATCGGTG
* * *
88514333 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCATCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACA
* * * *
88514381 GCGATGCCATGTCCTAGACATGGTCTTACATTGGCACATATATCAACA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACA
* * *
88514429 -CAATGCCATGTTCCAGAGATGGTCTTACACTGGCACACATATCAACA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACA
* * *
88514476 CCGATGCCATGTCCCATACATGGTCTTATAGTGGCACACATATCAACA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACA
* * * *
88514524 CCGATGCCATGTCCCAGATATGGTCTTACAGTGGTACACATATCAACG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACA
* * * * * * * * **
88514572 TCGATGCCATGTTCTAAACATGGTCTTACACTGGCTCTCATCTCGGATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATC-AACA
*
88514621 CTGATGCCATGTCCCAGACATGGTCTTACAC
1 CCGATGCCATGTCCCAGACATGGTCTTACAC
88514652 GGGATTTCAT
Statistics
Matches: 228, Mismatches: 41, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
47 41 0.18
48 159 0.70
49 28 0.12
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.26
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACA
Found at i:88514456 original size:95 final size:96
Alignment explanation
Indices: 88514336--88514651 Score: 366
Period size: 95 Copynumber: 3.3 Consensus size: 96
88514326 ATCGGTGCCG
* * * *
88514336 ATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCATCAGCGATGCCATGTCCTAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACAGCGATGCCATGTCCTAAACA
* *
88514401 TGGTCTTACATTGGCACATATATCAACA-CA
66 TGGTCTTACACTGGCACACATATCAACACCA
* * * * *
88514431 ATGCCATGTTCCAGAGATGGTCTTACACTGGCACACATATCAACACCGATGCCATGTCCCATACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACAGCGATGCCATGTCCTAAACA
* * *
88514496 TGGTCTTATAGTGGCACACATATCAACACCG
66 TGGTCTTACACTGGCACACATATCAACACCA
* * * *
88514527 ATGCCATGTCCCAGATATGGTCTTACAGTGGTACACATATCAAC-GTCGATGCCATGTTCTAAAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACAG-CGATGCCATGTCCTAAAC
* * * * ** **
88514591 ATGGTCTTACACTGGCTCTCATCTCGGATGCTG
65 ATGGTCTTACACTGGCACACATATC-AACACCA
88514624 ATGCCATGTCCCAGACATGGTCTTACAC
1 ATGCCATGTCCCAGACATGGTCTTACAC
88514652 GGGATTTCAT
Statistics
Matches: 187, Mismatches: 31, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
95 82 0.44
96 76 0.41
97 29 0.16
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (96 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACAGCGATGCCATGTCCTAAACA
TGGTCTTACACTGGCACACATATCAACACCA
Found at i:88514501 original size:143 final size:145
Alignment explanation
Indices: 88514333--88514651 Score: 408
Period size: 143 Copynumber: 2.2 Consensus size: 145
88514323 CATATCGGTG
* * *
88514333 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCATCAGCGATGCCATGTCCTAG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAACACCGATGCCATGTCCCAG
* * * *
88514398 ACATGGTCTTACATTGGCACATATATCAAC-ACAATGCCATGTTCCAGAGATGGTCTTACACTGG
66 ACATGGTCTTACAGTGGCACACATATCAACGACAATGCCATGTTCCAAACATGGTCTTACACTGG
88514462 CACACATATC-AACA
131 CACACATATCGAACA
* * * *
88514476 CCGATGCCATGTCCCATACATGGTCTTATAGTGGCACACATATCAACACCGATGCCATGTCCCAG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAACACCGATGCCATGTCCCAG
* * * * *
88514541 ATATGGTCTTACAGTGGTACACATATCAACGTCGATGCCATGTTCTAAACATGGTCTTACACTGG
66 ACATGGTCTTACAGTGGCACACATATCAACGACAATGCCATGTTCCAAACATGGTCTTACACTGG
* * * * **
88514606 CTCTCATCTCGGATG
131 CACACATATCGAACA
* *
88514621 CTGATGCCATGTCCCAGACATGGTCTTACAC
1 CCGATGCCATGTCCCAAACATGGTCTTACAC
88514652 GGGATTTCAT
Statistics
Matches: 148, Mismatches: 26, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
143 84 0.57
144 36 0.24
145 28 0.19
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.26
Consensus pattern (145 bp):
CCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAACACCGATGCCATGTCCCAG
ACATGGTCTTACAGTGGCACACATATCAACGACAATGCCATGTTCCAAACATGGTCTTACACTGG
CACACATATCGAACA
Found at i:88518673 original size:46 final size:46
Alignment explanation
Indices: 88518530--88518673 Score: 143
Period size: 46 Copynumber: 3.1 Consensus size: 46
88518520 CCCGCCCATA
*
88518530 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTA--TACATC-CT
* * * * *
88518579 --CGAACTCGGACTCAACTCAACGAGTTCAGA--CATTTGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCC-T
* *
88518622 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCCT
88518669 AGTGA
1 AGTGA
88518674 CATGTCACTT
Statistics
Matches: 76, Mismatches: 13, Indels: 15
0.73 0.12 0.14
Matches are distributed among these distances:
42 1 0.01
43 6 0.08
45 2 0.03
46 33 0.43
47 28 0.37
48 6 0.08
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCCT
Found at i:88520419 original size:15 final size:15
Alignment explanation
Indices: 88520399--88520439 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
88520389 CAAGAAAACT
88520399 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
88520414 GAATAAAGAGATCCA
1 GAATAAAGAAATCCA
*
88520429 GTATAAAGAAA
1 GAATAAAGAAA
88520440 CCGAAGATAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.59, C:0.10, G:0.17, T:0.15
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:88523518 original size:93 final size:93
Alignment explanation
Indices: 88523388--88523558 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
88523378 CGCATAAGTG
* * *
88523388 AACTCGGACTCAACTCAATGAGCTTGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
88523453 GAGCTCGGATGCCTAGTTACATCTCTCA
66 GAGCTCGGATGCCTAGTTACATCTCTCA
*
88523481 AACTCGGACTCAACTCAACGAG-TTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 AACTCGGACTCAACTCAACGAGCTT-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
88523545 CGAGTTCGGGTGCC
65 CGAGCTCGGATGCC
88523559 CAAACATCCT
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTCA
Found at i:88523549 original size:46 final size:46
Alignment explanation
Indices: 88523380--88523553 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
88523370 GTAACCCGCG
* * * *
88523380 CATAAGTGAACTCGGACTCAACTCAATGAGCTT-GGGCGTTCGCATC
1 CATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTTGCATC
* * *
88523426 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATC
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATC
*
88523476 TC-TCA---AACTCGGACTCAACTCAACGAGTTCGGACATTTGCATC
1 -CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATC
88523519 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
88523554 GTGCCCAAAC
Statistics
Matches: 106, Mismatches: 12, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
42 1 0.01
43 9 0.08
44 1 0.01
45 1 0.01
46 58 0.55
47 27 0.25
49 1 0.01
50 7 0.07
51 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.23
Consensus pattern (46 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATC
Found at i:88523573 original size:46 final size:47
Alignment explanation
Indices: 88523382--88523573 Score: 143
Period size: 46 Copynumber: 4.1 Consensus size: 47
88523372 AACCCGCGCA
* * *
88523382 TAAGTGAACTCGGACTCAACTCAATGAGCTT--GG-GCGT-TCGCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTCGGGTGCCTAT-ACATCC
* *
88523427 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGCCTA--TACATC-C
* * * * *
88523478 TCA---AACTCGGACTCAACTCAACGAGTTC-GG-ACATTTGCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGCCTATACATCC
* *
88523520 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGCCCAAACATCC
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGCCTATACATCC
88523568 T-AGTGA
1 TAAGTGA
88523574 CATGTCACTT
Statistics
Matches: 114, Mismatches: 19, Indels: 26
0.72 0.12 0.16
Matches are distributed among these distances:
42 1 0.01
43 7 0.06
45 3 0.03
46 58 0.51
47 28 0.25
48 9 0.08
50 6 0.05
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.23
Consensus pattern (47 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGTGCCTATACATCC
Found at i:88524927 original size:214 final size:214
Alignment explanation
Indices: 88524558--88524986 Score: 777
Period size: 214 Copynumber: 2.0 Consensus size: 214
88524548 TACTCAACTA
* * *
88524558 ACCTTTAAACATCAACTGGGAGCGTAGGTCCGCGAACAATATTTAAGTTTATCAACTAGGAGCGT
1 ACCTTTAAACATCAACTGGGAGCGTAAGTCCACGAACAATATTGAAGTTTATCAACTAGGAGCGT
* * *
88524623 AGGCCGTGAGTTGTTTTGGAGTAGTGAGTTTACATCAGCCAACTCAAATAAATGAAAGTTGTGAG
66 AGGCCGAGAGTTGTTTAGGAGTAGTGAGTTTAAATCAGCCAACTCAAATAAATGAAAGTTGTGAG
88524688 TATAACTCAACTAACCTTTAAGCATCAACTGCGAGCTGTGGTGAAGTTTATTAGCTGGAAGTGTA
131 TATAACTCAACTAACCTTTAAGCATCAACTGCGAGCTGTGGTGAAGTTTATTAGCTGGAAGTGTA
88524753 GGTCTGCGAGCTGTTTCGG
196 GGTCTGCGAGCTGTTTCGG
* *
88524772 ACCTTTAAACATCAACTGGGAGCGTAAGTTCACGAACAATATTGAAGTTTATCAACTGGGAGCGT
1 ACCTTTAAACATCAACTGGGAGCGTAAGTCCACGAACAATATTGAAGTTTATCAACTAGGAGCGT
88524837 AGGCCGAGAGTTGTTTAGGAGTAGTGAGTTTAAATCAGCCAACTCAAATAAATGAAAGTTGTGAG
66 AGGCCGAGAGTTGTTTAGGAGTAGTGAGTTTAAATCAGCCAACTCAAATAAATGAAAGTTGTGAG
*
88524902 TATAACTCAACTAACCTTTAAGCATCAACTGCGAGCTGTGTTGAAGTTTATTAGCTGGAAGTGTA
131 TATAACTCAACTAACCTTTAAGCATCAACTGCGAGCTGTGGTGAAGTTTATTAGCTGGAAGTGTA
88524967 GGTCTGCGAGCTGTTTCGG
196 GGTCTGCGAGCTGTTTCGG
88524986 A
1 A
88524987 GTAGCAAGCT
Statistics
Matches: 206, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
214 206 1.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (214 bp):
ACCTTTAAACATCAACTGGGAGCGTAAGTCCACGAACAATATTGAAGTTTATCAACTAGGAGCGT
AGGCCGAGAGTTGTTTAGGAGTAGTGAGTTTAAATCAGCCAACTCAAATAAATGAAAGTTGTGAG
TATAACTCAACTAACCTTTAAGCATCAACTGCGAGCTGTGGTGAAGTTTATTAGCTGGAAGTGTA
GGTCTGCGAGCTGTTTCGG
Found at i:88525134 original size:104 final size:104
Alignment explanation
Indices: 88524968--88525290 Score: 448
Period size: 104 Copynumber: 3.1 Consensus size: 104
88524958 GGAAGTGTAG
* ** *
88524968 GTCTGCGAGCTGTTTCGGAGTAGCAAGCTTAACTCAGCTAACTCAAATAAATGAAGGTTGTGAAT
1 GTCTGCGAGCTGTTTCGAAGTAGTGAGCTTAACTCAGCTAACTCAAATAAATGAAGGTTGTGAGT
88525033 ATAACTCAGCTAAACTTTAAACATCAGCTGGGAGCAAAA
66 ATAACTCAGCTAAACTTTAAACATCAGCTGGGAGCAAAA
* *
88525072 GTCTGCGAGCTGTTTTGAAGTAGTGAGCTTAACTTAGCTAACTCAAATAAATGAAGGTTGTGAGT
1 GTCTGCGAGCTGTTTCGAAGTAGTGAGCTTAACTCAGCTAACTCAAATAAATGAAGGTTGTGAGT
* * *
88525137 GTAACTCAGTTAAACTTTAAACATCAACTGGGAGCAAAA
66 ATAACTCAGCTAAACTTTAAACATCAGCTGGGAGCAAAA
*** * * * *
88525176 GTCCATGAGTTGTTTCGAAGTAGTGAGCTTAACTCAACTAACTCAAATAAATTATGGTTGTGAGT
1 GTCTGCGAGCTGTTTCGAAGTAGTGAGCTTAACTCAGCTAACTCAAATAAATGAAGGTTGTGAGT
* * * * *
88525241 ATAACTTAGCTAACCTTTAAACATCAGTTGGGAGCATAG
66 ATAACTCAGCTAAACTTTAAACATCAGCTGGGAGCAAAA
*
88525280 GTCTGTGAGCT
1 GTCTGCGAGCT
88525291 ATGTTGAAAT
Statistics
Matches: 190, Mismatches: 29, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
104 190 1.00
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (104 bp):
GTCTGCGAGCTGTTTCGAAGTAGTGAGCTTAACTCAGCTAACTCAAATAAATGAAGGTTGTGAGT
ATAACTCAGCTAAACTTTAAACATCAGCTGGGAGCAAAA
Found at i:88527494 original size:30 final size:30
Alignment explanation
Indices: 88527458--88527519 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
88527448 AATGTGAAAA
88527458 GTTATCAAGGTATAAAAATGGGTCATGGAT
1 GTTATCAAGGTATAAAAATGGGTCATGGAT
*
88527488 GTTATCAAGGTATGAAAATGGGTCATGGAT
1 GTTATCAAGGTATAAAAATGGGTCATGGAT
88527518 GT
1 GT
88527520 ATTATGATGG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.31
Consensus pattern (30 bp):
GTTATCAAGGTATAAAAATGGGTCATGGAT
Found at i:88536420 original size:48 final size:48
Alignment explanation
Indices: 88536191--88536422 Score: 234
Period size: 48 Copynumber: 4.8 Consensus size: 48
88536181 GTAAAATTCT
* * *
88536191 GATGCCATGTCTCAGACATGGTCTTACACTGGCTCTCATGTATTG-GTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACA--TATTGAG-GCC
** * *
88536241 TTTTCCATGTCCCAGACATGGTCTTACACTAGCTTACATATTGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTGAGGCC
* * * *** *
88536289 AATGCCATGTCCCAGACATGGTCTTACA-TTGCCTCTCATAACAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAG-CTCACATATTGAGGCC
* * * *
88536337 GATGCCATGTTCTAAACATGGTCTTACACTGGCTCACATATTGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTGAGGCC
* *
88536385 GATGTCATGTCCCAGACATGGTCTTAAACTAGCTCACA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACA
88536423 AATAACCCTA
Statistics
Matches: 146, Mismatches: 33, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
47 2 0.01
48 110 0.75
49 3 0.02
50 31 0.21
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATTGAGGCC
Found at i:88544993 original size:68 final size:67
Alignment explanation
Indices: 88544921--88545070 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
88544911 CATCATGTGT
* * * *
88544921 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
88544983 ATGTAG
62 ATGTAG
** * *
88544989 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
88545054 AG
66 AG
88545056 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
88545071 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:88545026 original size:64 final size:64
Alignment explanation
Indices: 88544945--88545128 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
88544935 AGACATTATG
* *
88544945 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
88545009 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
88545074 AA
63 AA
* * * * *
88545076 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCAAGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
88545129 CGAACTATAT
Statistics
Matches: 97, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 21 0.22
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.22
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:88547493 original size:30 final size:30
Alignment explanation
Indices: 88547448--88547507 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
88547438 ATTTAATACG
* *
88547448 AACTTTGGCAAAATTATATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
88547478 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
88547508 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:88551462 original size:23 final size:23
Alignment explanation
Indices: 88551436--88551484 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
88551426 TCAACCAATC
* *
88551436 CATACCTAAAATAACATCAAATT
1 CATACCCAAAATAACATCAAACT
88551459 CATACCCAAAATAACATCAAACT
1 CATACCCAAAATAACATCAAACT
88551482 CAT
1 CAT
88551485 CAAATGGCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.51, C:0.27, G:0.00, T:0.22
Consensus pattern (23 bp):
CATACCCAAAATAACATCAAACT
Found at i:88557964 original size:48 final size:47
Alignment explanation
Indices: 88557734--88557966 Score: 209
Period size: 48 Copynumber: 4.8 Consensus size: 47
88557724 GGTAAAATGC
* * ** *
88557734 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATGTATCGTTGC
1 CGATGCCATGTCCCAAACATGGTCTTACACT-GCTCACA--TATTGAGGA
** * * * *
88557784 CTTTTCCATGTCCCAGACATGGTCTTCCACTGACTTACATATTGAGG-
1 CGATGCCATGTCCCAAACATGGTCTTACACTG-CTCACATATTGAGGA
* ** **
88557831 CTGATGCCATGTCCCAAACATGGTCTTACACTGCCTCTCATA-AAAATA
1 C-GATGCCATGTCCCAAACATGGTCTTACACTG-CTCACATATTGAGGA
* *
88557879 TAGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATTGAGGA
1 -CGATGCCATGTCCCAAACATGGTCTTACACT-GCTCACATATTGAGGA
88557928 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACA
1 CGATGCCATGTCCCAAACATGGTCTTACACT-GCTCACA
88557967 AATAACCCTA
Statistics
Matches: 145, Mismatches: 32, Indels: 14
0.76 0.17 0.07
Matches are distributed among these distances:
47 2 0.01
48 109 0.75
49 4 0.03
50 30 0.21
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (47 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGCTCACATATTGAGGA
Found at i:88563940 original size:16 final size:15
Alignment explanation
Indices: 88563915--88563948 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
88563905 GAAGTTGATA
*
88563915 ATAATTAATATATATT
1 ATAATAAATATA-ATT
88563931 ATAATAAATATAATT
1 ATAATAAATATAATT
88563946 ATA
1 ATA
88563949 TACTAGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:88566861 original size:16 final size:16
Alignment explanation
Indices: 88566840--88566871 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
88566830 TCTTTTCTTT
88566840 GGCACACATTGGACCG
1 GGCACACATTGGACCG
88566856 GGCACACATTGGACCG
1 GGCACACATTGGACCG
88566872 AACTTACCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.31, G:0.31, T:0.12
Consensus pattern (16 bp):
GGCACACATTGGACCG
Found at i:88589786 original size:26 final size:27
Alignment explanation
Indices: 88589750--88589802 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
88589740 TGTCAGCTAG
* *
88589750 TGAAATTTTAA-TGTTCGAATGTATGC
1 TGAAATTTTAAGTGTCCGAATGCATGC
*
88589776 TGAATTTTTAAGTGTCCGAATGCATGC
1 TGAAATTTTAAGTGTCCGAATGCATGC
88589803 CAGAATTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (27 bp):
TGAAATTTTAAGTGTCCGAATGCATGC
Found at i:88591151 original size:48 final size:47
Alignment explanation
Indices: 88591072--88591219 Score: 197
Period size: 48 Copynumber: 3.1 Consensus size: 47
88591062 TTGATGTACA
* * *
88591072 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTAAAATACGTATG
1 AGATATATATATGTGGTAAAG-CGAAAGGCTAATGTGAAATATGTATG
88591120 AGATATATATATGTGGTAAAGTCGAAAGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAG-CGAAAGGCTAATGTGAAATATGTATG
** ** *
88591168 AGCCATGCATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCGAAA-GGCTAATGTGAAATATGTATG
88591216 AGAT
1 AGAT
88591220 GTGTATATAT
Statistics
Matches: 88, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
47 4 0.05
48 84 0.95
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (47 bp):
AGATATATATATGTGGTAAAGCGAAAGGCTAATGTGAAATATGTATG
Found at i:88593434 original size:40 final size:40
Alignment explanation
Indices: 88593379--88593582 Score: 295
Period size: 40 Copynumber: 5.1 Consensus size: 40
88593369 TGGATGATAA
* *
88593379 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
88593419 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
88593459 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
88593499 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * * *
88593539 TCGGGCTATGTCCCGAAGGTATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
88593579 CCGG
1 CCGG
88593583 TTCAATCCCG
Statistics
Matches: 151, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 3 0.02
40 148 0.98
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:88601748 original size:43 final size:43
Alignment explanation
Indices: 88601700--88601801 Score: 177
Period size: 43 Copynumber: 2.4 Consensus size: 43
88601690 CACGGGCAGA
* *
88601700 GACACGGGCGTGTGTCTCAGCCTTGTCTGACACATGGTCAGGT
1 GACACGGCCGTGTGTCTCAGCCGTGTCTGACACATGGTCAGGT
*
88601743 GACACGGCCGTGTGTTTCAGCCGTGTCTGACACATGGTCAGGT
1 GACACGGCCGTGTGTCTCAGCCGTGTCTGACACATGGTCAGGT
88601786 GACACGGCCGTGTGTC
1 GACACGGCCGTGTGTC
88601802 CCCTAGTGTT
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.16, C:0.26, G:0.33, T:0.25
Consensus pattern (43 bp):
GACACGGCCGTGTGTCTCAGCCGTGTCTGACACATGGTCAGGT
Found at i:88602110 original size:19 final size:19
Alignment explanation
Indices: 88602086--88602131 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
88602076 CCAGTGAAAC
88602086 GGGCGTGTCTTCAGCCTGT
1 GGGCGTGTCTTCAGCCTGT
*
88602105 GGGCGTGTCTTCGGCCTGT
1 GGGCGTGTCTTCAGCCTGT
88602124 GGGCGTGT
1 GGGCGTGT
88602132 GCCCCCTGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.02, C:0.24, G:0.43, T:0.30
Consensus pattern (19 bp):
GGGCGTGTCTTCAGCCTGT
Found at i:88610575 original size:39 final size:40
Alignment explanation
Indices: 88610530--88610701 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
88610520 GCTCCTCGTT
* * *
88610530 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
88610570 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
88610609 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
88610649 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
88610689 CAAATGCCTTCGG
1 CAAATGCCTTCGG
88610702 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:88610630 original size:40 final size:39
Alignment explanation
Indices: 88610532--88610754 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
88610522 TCCTCGTTCA
* * * *
88610532 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
88610571 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
88610610 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
88610650 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
88610690 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
88610731 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
88610755 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:88610714 original size:80 final size:79
Alignment explanation
Indices: 88610530--88610754 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
88610520 GCTCCTCGTT
* * * * *
88610530 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
88610594 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
88610609 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
88610674 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
88610689 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
88610753 GA
63 GA
88610755 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:88610763 original size:41 final size:41
Alignment explanation
Indices: 88610686--88610763 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
88610676 TTTGTATCTC
* * *
88610686 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
88610727 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
88610764 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:88617699 original size:40 final size:40
Alignment explanation
Indices: 88617583--88617806 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 40
88617573 GCTCCTCGTT
* * * *
88617583 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
88617623 C-AATGCCTTCGGGAC-TAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
88617661 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
88617701 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
88617741 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
88617782 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
88617807 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 19, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
38 20 0.13
39 33 0.21
40 90 0.57
41 15 0.09
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Done.