Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 269 of 349
Found at i:89943129 original size:28 final size:26
Alignment explanation
Indices: 89943045--89943199 Score: 152
Period size: 28 Copynumber: 5.8 Consensus size: 26
89943035 AAATTGTACA
89943045 GCACTAAGTGTGCG-ATTCGACTATGT
1 GCACTAAGTGTGCGAATT-GACTATGT
* *
89943071 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGAATTGACTATG-T
* *
89943098 GCACTAAGTGTTGCGAATTGACCATGCG
1 GCACTAAGTG-TGCGAATTGACTATG-T
* *
89943126 GCACTAAGTGTGCGAGTCTAACTATGT
1 GCACTAAGTGTGCGAAT-TGACTATGT
* *
89943153 AGCACTAAGTGTGCG-ATTGATTACGT
1 -GCACTAAGTGTGCGAATTGACTATGT
*
89943179 GGCACTAAGTGTGCGAGTTGA
1 -GCACTAAGTGTGCGAATTGA
89943200 TTGTATAGCA
Statistics
Matches: 106, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
26 40 0.38
27 24 0.23
28 42 0.40
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
GCACTAAGTGTGCGAATTGACTATGT
Found at i:89943211 original size:81 final size:81
Alignment explanation
Indices: 89943037--89943220 Score: 203
Period size: 81 Copynumber: 2.3 Consensus size: 81
89943027 GCGGGATTAA
* * *
89943037 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTGCACTAAGTGTGCGAAATGAATATGATGCAC
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTGCACTAAGTGTGCGAAATGAATACGATGCAC
89943102 TAAGTGTTGCGAATTG
66 TAAGTGTTGCGAATTG
*** * * * *
89943118 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCG-ATTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGT-GCACTAAGTGTGCGAAATGAATACGAT-G
*
89943181 CACTAAGTG-TGCGAGTTG
63 CACTAAGTGTTGCGAATTG
* *
89943199 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
89943221 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 18, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
81 44 0.54
82 24 0.29
83 14 0.17
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTGCACTAAGTGTGCGAAATGAATACGATGCAC
TAAGTGTTGCGAATTG
Found at i:89947306 original size:23 final size:23
Alignment explanation
Indices: 89947280--89947326 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
89947270 TACGCAACAT
*
89947280 AGTTTAAAAAACTTCTGCAAGAA
1 AGTTTAAAAAACTTCAGCAAGAA
*
89947303 AGTTTAAAAAGCTTCAGCAAGAA
1 AGTTTAAAAAACTTCAGCAAGAA
89947326 A
1 A
89947327 TATTGTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.49, C:0.13, G:0.15, T:0.23
Consensus pattern (23 bp):
AGTTTAAAAAACTTCAGCAAGAA
Found at i:89953515 original size:19 final size:21
Alignment explanation
Indices: 89953493--89953536 Score: 58
Period size: 19 Copynumber: 2.2 Consensus size: 21
89953483 TAAAATTTAA
*
89953493 AATTTTTATAAA-TATTTTG-
1 AATTTTTAAAAATTATTTTGT
89953512 AA-TTTTAAAAATTATTTTGT
1 AATTTTTAAAAATTATTTTGT
89953532 AATTT
1 AATTT
89953537 ATGTTTAGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 2 0.10
21 2 0.10
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (21 bp):
AATTTTTAAAAATTATTTTGT
Found at i:89953517 original size:18 final size:20
Alignment explanation
Indices: 89953496--89953536 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
89953486 AATTTAAAAT
*
89953496 TTTTATAAA-TATTTTG-AA
1 TTTTAAAAATTATTTTGTAA
89953514 TTTTAAAAATTATTTTGTAA
1 TTTTAAAAATTATTTTGTAA
89953534 TTT
1 TTT
89953537 ATGTTTAGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 8 0.40
19 7 0.35
20 5 0.25
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.59
Consensus pattern (20 bp):
TTTTAAAAATTATTTTGTAA
Found at i:89962083 original size:11 final size:11
Alignment explanation
Indices: 89962069--89962138 Score: 54
Period size: 11 Copynumber: 6.5 Consensus size: 11
89962059 TTTTTTAATT
*
89962069 TTTTAATATTA
1 TTTTACTATTA
**
89962080 TTTTTTTATTA
1 TTTTACTATTA
89962091 TTTT-CTATCTA
1 TTTTACTAT-TA
*
89962102 TTTTATTA-TA
1 TTTTACTATTA
89962112 TTTTACTATTA
1 TTTTACTATTA
* * *
89962123 TGTTGCTACTA
1 TTTTACTATTA
89962134 TTTTA
1 TTTTA
89962139 TTGTTATTAT
Statistics
Matches: 46, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
10 12 0.26
11 32 0.70
12 2 0.04
ACGTcount: A:0.24, C:0.07, G:0.03, T:0.66
Consensus pattern (11 bp):
TTTTACTATTA
Found at i:89962094 original size:22 final size:22
Alignment explanation
Indices: 89962055--89962123 Score: 81
Period size: 22 Copynumber: 3.2 Consensus size: 22
89962045 CAACAAAAAT
*
89962055 TTATTTTTTTAATT-TTTTAATA
1 TTATTTTTTT-ATTATTTTACTA
89962077 TTATTTTTTTATTATTTT-CTA
1 TTATTTTTTTATTATTTTACTA
*
89962098 TCTATTTTATTA-TATTTTACTA
1 T-TATTTTTTTATTATTTTACTA
89962120 TTAT
1 TTAT
89962124 GTTGCTACTA
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
21 15 0.36
22 27 0.64
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (22 bp):
TTATTTTTTTATTATTTTACTA
Found at i:89967063 original size:10 final size:10
Alignment explanation
Indices: 89967021--89967071 Score: 57
Period size: 11 Copynumber: 4.8 Consensus size: 10
89967011 CACAAAAGTC
89967021 CTCTCATAATT
1 CTCTCA-AATT
89967032 CTCTCTAAATT
1 CTCTC-AAATT
*
89967043 CCCTCCAAATT
1 CTCT-CAAATT
89967054 CTCTCAAATT
1 CTCTCAAATT
*
89967064 TTCTCAAA
1 CTCTCAAA
89967072 GCTCTTTTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
10 13 0.37
11 20 0.57
12 2 0.06
ACGTcount: A:0.29, C:0.31, G:0.00, T:0.39
Consensus pattern (10 bp):
CTCTCAAATT
Found at i:89968849 original size:18 final size:18
Alignment explanation
Indices: 89968826--89968862 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
89968816 ATGCTAGGTG
*
89968826 TGTATCCTAGCCCTTATA
1 TGTATCCTAACCCTTATA
89968844 TGTATCCTAACCCTTATA
1 TGTATCCTAACCCTTATA
89968862 T
1 T
89968863 ATTTCCTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.24, C:0.27, G:0.08, T:0.41
Consensus pattern (18 bp):
TGTATCCTAACCCTTATA
Found at i:89968869 original size:18 final size:18
Alignment explanation
Indices: 89968828--89968869 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
89968818 GCTAGGTGTG
* *
89968828 TATCCTAGCCCTTATATG
1 TATCCTAACCCTTATATA
89968846 TATCCTAACCCTTATATA
1 TATCCTAACCCTTATATA
*
89968864 TTTCCT
1 TATCCT
89968870 TTTCCCAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.24, C:0.29, G:0.05, T:0.43
Consensus pattern (18 bp):
TATCCTAACCCTTATATA
Found at i:89973577 original size:48 final size:48
Alignment explanation
Indices: 89973459--89973883 Score: 388
Period size: 48 Copynumber: 8.8 Consensus size: 48
89973449 GGTAAAATGT
* * * * **
89973459 CGATGCCATGTCCTAGACATGGTCTTAAACTGGCTCACATGTATCTGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATA-GAG-GC
* * *
89973509 CGATGCCATGTTCCAGACATGGTCTTACACTGGCTTACATATAGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATAGAGGC
* * * * *
89973557 CGATGCCATGTCCTAGACATGGTATTACACTAGCTCTCATA-ACAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATA-GAGGC
* * * * *
89973605 CAATGCCATGTTCCAAACATGTTCTTACACTA-CTTCACATATTGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGC-TCACATATAGAGGC
* * * ** *
89973653 CGATGCTATGTCCCAAATATGGTCTTGTACTAGCTCACATATTGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATAGAGGC
* *
89973701 CGATGCCATGTCCCAGACATGGTCTTACATTAGCTCACATATTGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATAGAGGC
* * * * * *
89973749 CTATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATA-ACAATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATA-GAGGC
* * * * * * * * *
89973797 CGATGCTATGTTCAAAACATGGTTTTACATTGGCTCACATATTGAAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATAGAGGC
* *
89973845 TGATGCCATGTCCCAGACATGGTCTTACACTAGCCCACA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACA
89973884 AATAACCCTA
Statistics
Matches: 302, Mismatches: 67, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
47 2 0.01
48 260 0.86
49 2 0.01
50 38 0.13
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATAGAGGC
Found at i:89973631 original size:96 final size:96
Alignment explanation
Indices: 89973459--89973883 Score: 465
Period size: 96 Copynumber: 4.4 Consensus size: 96
89973449 GGTAAAATGT
* * * * **
89973459 CGATGCCATGTCCTAGACATGGTCTTAAACTGGCTCACATGTATCTGTGCCGATGCCATGTTCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACA--TAACAATGCCGATGCCATGTTCCA
* * *
89973524 GACATGGTCTTACACTGGCTTACATATAGAGGC
64 AACATGGTCTTACACTGGCTCACATATTGAGGC
* * * *
89973557 CGATGCCATGTCCTAGACATGGTATTACACTAGCTCTCATAACAATGCCAATGCCATGTTCCAAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAACAATGCCGATGCCATGTTCCAAA
* *
89973622 CATGTTCTTACACT-ACTTCACATATTGAGGC
66 CATGGTCTTACACTGGC-TCACATATTGAGGC
* * * ** *** * * *
89973653 CGATGCTATGTCCCAAATATGGTCTTGTACTAGCTCACATATTGAGGCCGATGCCATGTCCCAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAACAATGCCGATGCCATGTTCCAAA
* *
89973718 CATGGTCTTACATTAGCTCACATATTGAGGC
66 CATGGTCTTACACTGGCTCACATATTGAGGC
* * * * * *
89973749 CTATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACAATGTCGATGCTATGTTCAAAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAACAATGCCGATGCCATGTTCCAAA
* * *
89973814 CATGGTTTTACATTGGCTCACATATTGAAGC
66 CATGGTCTTACACTGGCTCACATATTGAGGC
* *
89973845 TGATGCCATGTCCCAGACATGGTCTTACACTAGCCCACA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACA
89973884 AATAACCCTA
Statistics
Matches: 271, Mismatches: 54, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
95 1 0.00
96 234 0.86
97 1 0.00
98 35 0.13
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (96 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAACAATGCCGATGCCATGTTCCAAA
CATGGTCTTACACTGGCTCACATATTGAGGC
Found at i:89973723 original size:144 final size:143
Alignment explanation
Indices: 89973461--89973883 Score: 438
Period size: 144 Copynumber: 2.9 Consensus size: 143
89973451 TAAAATGTCG
* * * * * * * *
89973461 ATGCCATGTCCTAGACATGGTCTTAAACTGGCTCACATGTATC-TGTGCCGATGCCATGTTCCAG
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCACA--TAACAAG-GCCGATGCTATGTTCCAA
* * * * *
89973525 ACATGGTCTTACACTGGCTTACATATAGAGGCCGATGCCATGTCCTAGACATGGTATTACACTAG
63 ACATGGTCTT-TACTGGCTCACATATTGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAG
* *
89973590 CTCTCATAACAATGCCA
127 CTCACATAACAAGGCCA
* * *** * *
89973607 ATGCCATGTTCCAAACATGTTCTTACACTA-CTTCACATATTGAGGCCGATGCTATGTCCCAAAT
1 ATGCCATGTCCCAAACATGGTCTTACACTAGC-TCACATAACAAGGCCGATGCTATGTTCCAAAC
* *
89973671 ATGGTCTTGTACTAGCTCACATATTGAGGCCGATGCCATGTCCCAGACATGGTCTTACATTAGCT
65 ATGGTCTT-TACTGGCTCACATATTGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT
*** *
89973736 CACATATTGAGGCCT
129 CACATAACAAGGCCA
* * * *
89973751 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACAATGTCGATGCTATGTTCAAAACA
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATAACAAGGCCGATGCTATGTTCCAAACA
* * *
89973816 TGGT-TTTACATTGGCTCACATATTGAAGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCC
66 TGGTCTTTAC--TGGCTCACATATTGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT
89973880 CACA
129 CACA
89973884 AATAACCCTA
Statistics
Matches: 230, Mismatches: 42, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
142 3 0.01
143 2 0.01
144 193 0.84
145 3 0.01
146 29 0.13
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (143 bp):
ATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATAACAAGGCCGATGCTATGTTCCAAACA
TGGTCTTTACTGGCTCACATATTGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCA
CATAACAAGGCCA
Found at i:89979619 original size:15 final size:15
Alignment explanation
Indices: 89979599--89979630 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
89979589 GTCACGGGCA
89979599 CACTTTCAACTAGCG
1 CACTTTCAACTAGCG
*
89979614 CACTTTCAACTGGCG
1 CACTTTCAACTAGCG
89979629 CA
1 CA
89979631 GTCTCTTCAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.34, G:0.16, T:0.25
Consensus pattern (15 bp):
CACTTTCAACTAGCG
Found at i:89980271 original size:28 final size:28
Alignment explanation
Indices: 89980221--89980274 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 28
89980211 ACAGGGGTTT
89980221 TCACACGGCCTGGCACACGCCGTGTCCC
1 TCACACGGCCTGGCACACGCCGTGTCCC
89980249 TCACACGGCCAT-G-ACACGCCCGTGTC
1 TCACACGGCC-TGGCACACG-CCGTGTC
89980275 TCAGCTCGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
27 5 0.21
28 18 0.75
29 1 0.04
ACGTcount: A:0.17, C:0.44, G:0.24, T:0.15
Consensus pattern (28 bp):
TCACACGGCCTGGCACACGCCGTGTCCC
Found at i:89984511 original size:48 final size:48
Alignment explanation
Indices: 89984393--89984717 Score: 305
Period size: 48 Copynumber: 6.7 Consensus size: 48
89984383 TGGTAAAATA
* ** * * * **
89984393 CCGATGCCATGTCCTAGGCATGGTCTTACATTGGCTCTCATGTATCGGTG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCAT-AAT-AATG
* * *
89984443 CCAATGCCATGTCCCAAACATGGTCTTACACTAGCTCTTATAACAATG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATAATG
* * *
89984491 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATAATAATG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATAATG
* * * * * * * *
89984539 CCGATGCTATGTTCCAAACATAGTCTTACAGTAGCTCACATATTGAGG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATAATG
* * *
89984587 CTGATGCCATGTCCCATACATGGTCTTACACTAGCTCTCATAAGAATG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATAATG
* * * *
89984635 TCGATGCCATGTTCCAAATATGGTCTTACACT-GACT-T-ATATATTGATG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAG-CTCTCATA-A-TAATG
* *
89984683 TCGATGCCATGTCCCAGACATGGTCTTACACTAGC
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGC
89984718 CCATAAATAA
Statistics
Matches: 226, Mismatches: 45, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
46 3 0.01
47 3 0.01
48 184 0.81
49 2 0.01
50 34 0.15
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (48 bp):
CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATAATG
Found at i:89984709 original size:144 final size:144
Alignment explanation
Indices: 89984446--89984717 Score: 400
Period size: 144 Copynumber: 1.9 Consensus size: 144
89984436 ATCGGTGCCA
*
89984446 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTTATAACAATGCCGATGCCATGTTCCAAACA
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAAACA
* * * *
89984511 TGGTCTTACACTGGCTCACATAATAATGCCGATGCTATGTTCCAAACATAGTCTTACAGTAGCTC
66 TGGTCTTACACTGACTCACATAATAATGCCGATGCCATGTCCCAAACATAGTCTTACACTAGCTC
89984576 ACATATTGAGGCTG
131 ACATATTGAGGCTG
* * * *
89984590 ATGCCATGTCCCATACATGGTCTTACACTAGCTCTCATAAGAATGTCGATGCCATGTTCCAAATA
1 ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAAACA
* * * * * * *
89984655 TGGTCTTACACTGACTTATATATTGATGTCGATGCCATGTCCCAGACATGGTCTTACACTAGC
66 TGGTCTTACACTGACTCACATAATAATGCCGATGCCATGTCCCAAACATAGTCTTACACTAGC
89984718 CCATAAATAA
Statistics
Matches: 112, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
144 112 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (144 bp):
ATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAAACA
TGGTCTTACACTGACTCACATAATAATGCCGATGCCATGTCCCAAACATAGTCTTACACTAGCTC
ACATATTGAGGCTG
Found at i:89986009 original size:21 final size:21
Alignment explanation
Indices: 89985958--89986032 Score: 114
Period size: 21 Copynumber: 3.5 Consensus size: 21
89985948 ACTACTAGAT
* *
89985958 CCCCTGCCGGAGGAACCACAA
1 CCCCCGCCGGAGCAACCACAA
*
89985979 TCCCCTGCCGGAGCAACCACAA
1 -CCCCCGCCGGAGCAACCACAA
89986001 CCCCCGCCGGAGCAACCACAA
1 CCCCCGCCGGAGCAACCACAA
89986022 CCCCCGCCGGA
1 CCCCCGCCGGA
89986033 AGGTGAACCA
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
21 31 0.61
22 20 0.39
ACGTcount: A:0.25, C:0.49, G:0.21, T:0.04
Consensus pattern (21 bp):
CCCCCGCCGGAGCAACCACAA
Found at i:89988006 original size:18 final size:18
Alignment explanation
Indices: 89987985--89988020 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
89987975 CAACATTACG
89987985 TGATAAAAATTTTATTCA
1 TGATAAAAATTTTATTCA
89988003 TGATAAAAATTTTATTCA
1 TGATAAAAATTTTATTCA
89988021 AAAACCCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (18 bp):
TGATAAAAATTTTATTCA
Found at i:89989786 original size:125 final size:125
Alignment explanation
Indices: 89989326--89989886 Score: 746
Period size: 125 Copynumber: 4.5 Consensus size: 125
89989316 ACAAATAGGA
* * * *
89989326 ACTACTGTAGCAAAAGAGCATCCATGTGGGAGCTTTTTTTTC-GTAATTTTACTGACAGTACATC
1 ACTACTGTAGCAAAAGAGCATCCACGTGGAAGC--TTTTTTCAGTAATTTTGCTGACAGTGCATC
* ** *
89989390 CTGCTTGAAGCGTTTTGGACACTATTTATTCAGAAACATCTTCTC-GAA--A----TTA-AT
64 CTGCTTGAAGCGTTTTGGACACTATTTTTTCAGAAATGTCTTCTCAAAATTATTTTTTAGAT
* * *
89989444 ACTATTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
1 ACTACTGTAGCAAAAGAGCATCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
* *
89989509 GCTTGATGCGTTTTGGACACTATTTTTTTCAGAAATGTCTTCTCAAAATTATTTTTCCAGAT
66 GCTTGAAGCGTTTTGGACACTA-TTTTTTCAGAAATGTCTTCTCAAAATTATTTTT-TAGAT
* * * * * *
89989571 ACTACTGAAGCAAAAGAGCGTCCATGTGGAAGCTTTTTTTTAGTAATTTTGCTGACAATGTATCC
1 ACTACTGTAGCAAAAGAGCATCCACGTGGAAGC-TTTTTTCAGTAATTTTGCTGACAGTGCATCC
* * *
89989636 TACTTGAAGCATTTTGGACACTATTTTTTCAGAAATGTCTCCTCAAAATTATTTTTTAGAT
65 TGCTTGAAGCGTTTTGGACACTATTTTTTCAGAAATGTCTTCTCAAAATTATTTTTTAGAT
**
89989697 AAAACTGTAGCAAAAGAGCATCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
1 ACTACTGTAGCAAAAGAGCATCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
* * * *
89989762 GCTTGAAGCGTTTTCGACATTATTTGTTCAGAAATGTCTTCTTAAAATTATTTTTTTAGAT
66 GCTTGAAGCGTTTTGGACACTATTTTTTCAGAAATGTCTTCTCAAAATTA-TTTTTTAGAT
89989823 ACTACTGTAGCAAAAGAGCATCCACGTGGAAGC-TTTTTCAGTAATTTTGCTGACAGTGCATCCT
1 ACTACTGTAGCAAAAGAGCATCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
89989887 AATTTAATTA
Statistics
Matches: 390, Mismatches: 40, Indels: 19
0.87 0.09 0.04
Matches are distributed among these distances:
116 7 0.02
117 43 0.11
118 48 0.12
119 2 0.01
121 1 0.00
125 104 0.27
126 74 0.19
127 63 0.16
128 48 0.12
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.37
Consensus pattern (125 bp):
ACTACTGTAGCAAAAGAGCATCCACGTGGAAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCT
GCTTGAAGCGTTTTGGACACTATTTTTTCAGAAATGTCTTCTCAAAATTATTTTTTAGAT
Found at i:89990508 original size:19 final size:18
Alignment explanation
Indices: 89990462--89990584 Score: 70
Period size: 19 Copynumber: 6.4 Consensus size: 18
89990452 TTTAGAAATT
89990462 ATATAAAATATTATAAAA
1 ATATAAAATATTATAAAA
* * *
89990480 TTATGGAAATATTTTAAAAA
1 ATAT-AAAATATTAT-AAAA
*
89990500 ATATAAAATACTATAAAA
1 ATATAAAATATTATAAAA
*
89990518 GGTCATAGAAA-ATTATATAAA
1 -AT-ATA-AAATATTATA-AAA
* *
89990539 ATTTATTAAA-ATGATAAAA
1 A--TATAAAATATTATAAAA
*
89990558 ATATAAAAAAATTATAAAA
1 ATAT-AAAATATTATAAAA
89990577 ATCATAAA
1 AT-ATAAA
89990585 TTCTTTTTGT
Statistics
Matches: 80, Mismatches: 14, Indels: 21
0.70 0.12 0.18
Matches are distributed among these distances:
17 3 0.04
18 10 0.12
19 33 0.41
20 25 0.31
21 8 0.10
22 1 0.01
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (18 bp):
ATATAAAATATTATAAAA
Found at i:89990541 original size:10 final size:10
Alignment explanation
Indices: 89990457--89990578 Score: 55
Period size: 10 Copynumber: 12.4 Consensus size: 10
89990447 AACATTTTAG
89990457 AAATTATATA
1 AAATTATATA
89990467 AAA-TATTATA
1 AAATTA-TATA
**
89990477 AAATTATGGA
1 AAATTATATA
89990487 AATATT-T-TA
1 AA-ATTATATA
*
89990496 AAA-AATATA
1 AAATTATATA
89990505 AAA-TACTATA
1 AAATTA-TATA
* *
89990515 AAAGGTCATAGA
1 AAA--TTATATA
89990527 AAATTATATA
1 AAATTATATA
89990537 AAATT-TATTA
1 AAATTATA-TA
*
89990547 AAATGATA-A
1 AAATTATATA
*
89990556 AAA-TATAAAA
1 AAATTAT-ATA
89990566 AAATTATA-A
1 AAATTATATA
89990575 AAAT
1 AAAT
89990579 CATAAATTCT
Statistics
Matches: 87, Mismatches: 11, Indels: 29
0.69 0.09 0.23
Matches are distributed among these distances:
8 4 0.05
9 23 0.26
10 43 0.49
11 10 0.11
12 6 0.07
13 1 0.01
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.33
Consensus pattern (10 bp):
AAATTATATA
Found at i:89990567 original size:28 final size:28
Alignment explanation
Indices: 89990496--89990584 Score: 81
Period size: 28 Copynumber: 3.1 Consensus size: 28
89990486 AAATATTTTA
* * *
89990496 AAAAATAT-AAAATACTATAAAAGGTCAT
1 AAAAATATAAAAAAATTATAAAA-ATCAT
* * * *
89990524 AGAAAATTATATAAAATTTATTAAAATGAT
1 A-AAAA-TATAAAAAAATTATAAAAATCAT
89990554 AAAAATATAAAAAAATTATAAAAATCAT
1 AAAAATATAAAAAAATTATAAAAATCAT
89990582 AAA
1 AAA
89990585 TTCTTTTTGT
Statistics
Matches: 47, Mismatches: 11, Indels: 6
0.73 0.17 0.09
Matches are distributed among these distances:
28 23 0.49
29 8 0.17
30 7 0.15
31 9 0.19
ACGTcount: A:0.64, C:0.03, G:0.04, T:0.28
Consensus pattern (28 bp):
AAAAATATAAAAAAATTATAAAAATCAT
Found at i:89991547 original size:21 final size:20
Alignment explanation
Indices: 89991497--89991555 Score: 57
Period size: 20 Copynumber: 2.8 Consensus size: 20
89991487 AGGTTTTCTT
89991497 TAATTTTAATAAATTTTTATAA
1 TAATTTT-AT-AATTTTTATAA
* *
89991519 TCATTTTAATCATTTTTAT-A
1 TAATTTT-ATAATTTTTATAA
89991539 TAATATTTATAATTTTT
1 TAAT-TTTATAATTTTT
89991556 CATAGTTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 12 0.38
21 11 0.34
22 9 0.28
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.59
Consensus pattern (20 bp):
TAATTTTATAATTTTTATAA
Found at i:89992679 original size:21 final size:21
Alignment explanation
Indices: 89992653--89992701 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
89992643 GTTAGTCACA
* *
89992653 CGGCCGTGTCTCGCACATGAC
1 CGGCCGCGTCTCGCACACGAC
*
89992674 CGGCCGCGTCTCGCACACGGC
1 CGGCCGCGTCTCGCACACGAC
89992695 CGGCCGC
1 CGGCCGC
89992702 ACATCCGTGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.10, C:0.45, G:0.33, T:0.12
Consensus pattern (21 bp):
CGGCCGCGTCTCGCACACGAC
Found at i:89998263 original size:18 final size:18
Alignment explanation
Indices: 89998240--89998300 Score: 86
Period size: 18 Copynumber: 3.4 Consensus size: 18
89998230 GAACAATTAT
*
89998240 TTATTCAATAATAGTCAG
1 TTATTCAATAATAATCAG
* * *
89998258 TTATTCATTAACAATCAA
1 TTATTCAATAATAATCAG
89998276 TTATTCAATAATAATCAG
1 TTATTCAATAATAATCAG
89998294 TTATTCA
1 TTATTCA
89998301 GTATCAATCA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.41, C:0.13, G:0.05, T:0.41
Consensus pattern (18 bp):
TTATTCAATAATAATCAG
Found at i:89998272 original size:36 final size:36
Alignment explanation
Indices: 89998231--89998354 Score: 113
Period size: 36 Copynumber: 3.2 Consensus size: 36
89998221 AGTCAATCAG
89998231 AACAATTATTTATTCAATAATAGTCAGTTATTCATT
1 AACAATTATTTATTCAATAATAGTCAGTTATTCATT
* * *
89998267 AACAATCAATTATTCAATAATAATCAGTTATTCAGTAT
1 AACAATTATTTATTCAATAATAGTCAGTTATTCA-T-T
* * *
89998305 CAATCAATTGATCGGTTATCCAATAATAGTCAATTATTCAGT
1 -AA-CAATT-AT---TTATTCAATAATAGTCAGTTATTCATT
*
89998347 AAAAATTA
1 AACAATTA
89998355 GATATACAGT
Statistics
Matches: 70, Mismatches: 10, Indels: 13
0.75 0.11 0.14
Matches are distributed among these distances:
36 31 0.44
37 1 0.01
38 1 0.01
39 3 0.04
40 8 0.11
41 3 0.04
42 1 0.01
44 22 0.31
ACGTcount: A:0.42, C:0.13, G:0.07, T:0.38
Consensus pattern (36 bp):
AACAATTATTTATTCAATAATAGTCAGTTATTCATT
Found at i:89998309 original size:18 final size:18
Alignment explanation
Indices: 89998240--89998310 Score: 65
Period size: 18 Copynumber: 3.9 Consensus size: 18
89998230 GAACAATTAT
*
89998240 TTATTCAATAAT-AGTCAG
1 TTATTCAAT-ATCAATCAG
* * *
89998258 TTATTCATTAACAATCAA
1 TTATTCAATATCAATCAG
89998276 TTATTCAATAAT-AATCAG
1 TTATTCAAT-ATCAATCAG
*
89998294 TTATTCAGTATCAATCA
1 TTATTCAATATCAATCA
89998311 ATTGATCGGT
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
17 3 0.07
18 38 0.90
19 1 0.02
ACGTcount: A:0.41, C:0.14, G:0.06, T:0.39
Consensus pattern (18 bp):
TTATTCAATATCAATCAG
Found at i:89998385 original size:19 final size:19
Alignment explanation
Indices: 89998336--89998385 Score: 66
Period size: 18 Copynumber: 2.7 Consensus size: 19
89998326 AATAATAGTC
89998336 AATTATTCAGTAAAAATTA
1 AATTATTCAGTAAAAATTA
* * *
89998355 GA-TATACAGTAACAATTA
1 AATTATTCAGTAAAAATTA
89998373 AATTATTCAGTAA
1 AATTATTCAGTAA
89998386 TAGTCGATCT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
18 15 0.60
19 10 0.40
ACGTcount: A:0.50, C:0.08, G:0.08, T:0.34
Consensus pattern (19 bp):
AATTATTCAGTAAAAATTA
Found at i:90000178 original size:22 final size:21
Alignment explanation
Indices: 90000147--90000187 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
90000137 TTTTATTTCA
*
90000147 TAATATAATATCAATAATAAT
1 TAATATAATAACAATAATAAT
*
90000168 TAATAATAATAACATTAATA
1 TAAT-ATAATAACAATAATA
90000188 TTTACTTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.37
Consensus pattern (21 bp):
TAATATAATAACAATAATAAT
Found at i:90013103 original size:19 final size:19
Alignment explanation
Indices: 90013068--90013134 Score: 77
Period size: 18 Copynumber: 3.6 Consensus size: 19
90013058 ATTTTTAAAA
*
90013068 TATAAAT-TTTGGAATTTT
1 TATAAATATTTTGAATTTT
90013086 TATAAATATTTTGAA-TTT
1 TATAAATATTTTGAATTTT
*
90013104 TAAAAATTATTTTGAATTTT
1 TATAAA-TATTTTGAATTTT
*
90013124 TTTAAA-ATTTT
1 TATAAATATTTT
90013135 TGTTGAGACA
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
18 20 0.48
19 15 0.36
20 7 0.17
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (19 bp):
TATAAATATTTTGAATTTT
Found at i:90013135 original size:19 final size:20
Alignment explanation
Indices: 90012987--90013136 Score: 71
Period size: 19 Copynumber: 7.3 Consensus size: 20
90012977 ACAAAATTAT
90012987 TATTTTGTAATTTTTTT-AAA
1 TATTTTG-AATTTTTTTAAAA
* * *
90013007 TCTTTT-AACTTTTTT-ATA
1 TATTTTGAATTTTTTTAAAA
* *
90013025 TATTGATTGGAGTTTTTTTAGAA
1 TATT--TT-GAATTTTTTTAAAA
* * *
90013048 TATTTTTATAATTTTTAAAATA
1 TATTTTGA-ATTTTTTTAAA-A
*
90013070 TAAATTTTGGAATTTTTAT-AAA
1 T--ATTTT-GAATTTTTTTAAAA
*
90013092 TATTTTGAA--TTTTAAAAA
1 TATTTTGAATTTTTTTAAAA
90013110 TTATTTTGAATTTTTTTAAAA
1 -TATTTTGAATTTTTTTAAAA
90013131 T-TTTTG
1 TATTTTG
90013137 TTGAGACAAA
Statistics
Matches: 96, Mismatches: 20, Indels: 29
0.66 0.14 0.20
Matches are distributed among these distances:
17 3 0.03
18 16 0.17
19 17 0.18
20 14 0.15
21 17 0.18
22 11 0.11
23 7 0.07
24 10 0.10
25 1 0.01
ACGTcount: A:0.33, C:0.01, G:0.07, T:0.59
Consensus pattern (20 bp):
TATTTTGAATTTTTTTAAAA
Found at i:90015303 original size:27 final size:27
Alignment explanation
Indices: 90015273--90015330 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
90015263 GCAATTGAGT
* *
90015273 TAGTCCTTTAGAATAGTAAACACGGGG
1 TAGTCCGTCAGAATAGTAAACACGGGG
* * * *
90015300 TAGTTCGTCAGGATAGTAAGCATGGGG
1 TAGTCCGTCAGAATAGTAAACACGGGG
90015327 TAGT
1 TAGT
90015331 TCGTTGAGAC
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.29, C:0.12, G:0.31, T:0.28
Consensus pattern (27 bp):
TAGTCCGTCAGAATAGTAAACACGGGG
Found at i:90015331 original size:27 final size:27
Alignment explanation
Indices: 90015285--90015441 Score: 124
Period size: 27 Copynumber: 5.8 Consensus size: 27
90015275 GTCCTTTAGA
* *
90015285 ATAGTAAACACGGGGTAGTTCGTCAGG
1 ATAGTAAACATGGGGTAGTTCATCAGG
* * *
90015312 ATAGTAAGCATGGGGTAGTTCGT-TGAG
1 ATAGTAAACATGGGGTAGTTCATCAG-G
* ** *
90015339 ACAGTAAATGTGGGGTAGTTCATC-GAT
1 ATAGTAAACATGGGGTAGTTCATCAG-G
90015366 ATAGT-AA-ATGCGGAGTAGTTCATCAGG
1 ATAGTAAACATG-GG-GTAGTTCATCAGG
* * *
90015393 ACAGTAAACATGGGGTAGTTAATTAGG
1 ATAGTAAACATGGGGTAGTTCATCAGG
* *
90015420 ATAGTAAACACGTGGTAGTTCA
1 ATAGTAAACATGGGGTAGTTCA
90015442 CTAAGACAGT
Statistics
Matches: 104, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
25 2 0.02
26 5 0.05
27 89 0.86
28 5 0.05
29 3 0.03
ACGTcount: A:0.32, C:0.11, G:0.31, T:0.27
Consensus pattern (27 bp):
ATAGTAAACATGGGGTAGTTCATCAGG
Found at i:90015437 original size:81 final size:81
Alignment explanation
Indices: 90015285--90015441 Score: 181
Period size: 81 Copynumber: 1.9 Consensus size: 81
90015275 GTCCTTTAGA
* * * * ** ***
90015285 ATAGTAAACACGGGGTAGTTCGTCAGGATAGTAAGCATGGGGTAGTTCGTTGAGACAGTAAATGT
1 ATAGTAAACACGGAGTAGTTCATCAGGACAGTAAACATGGGGTAGTTAATTGAGACAGTAAACAC
90015350 GGGGTAGTTCATCGAT
66 GGGGTAGTTCATCGAT
** *
90015366 ATAGTAAATGCGGAGTAGTTCATCAGGACAGTAAACATGGGGTAGTTAATT-AGGATAGTAAACA
1 ATAGTAAACACGGAGTAGTTCATCAGGACAGTAAACATGGGGTAGTTAATTGA-GACAGTAAACA
*
90015430 CGTGGTAGTTCA
65 CGGGGTAGTTCA
90015442 CTAAGACAGT
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
80 1 0.02
81 61 0.98
ACGTcount: A:0.32, C:0.11, G:0.31, T:0.27
Consensus pattern (81 bp):
ATAGTAAACACGGAGTAGTTCATCAGGACAGTAAACATGGGGTAGTTAATTGAGACAGTAAACAC
GGGGTAGTTCATCGAT
Found at i:90015452 original size:27 final size:27
Alignment explanation
Indices: 90015392--90015456 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
90015382 AGTTCATCAG
* * *
90015392 GACAGTAAACATGGGGTAGTTAATTAG
1 GACAGTAAACACGGGGTAGTTAACTAA
* * *
90015419 GATAGTAAACACGTGGTAGTTCACTAA
1 GACAGTAAACACGGGGTAGTTAACTAA
90015446 GACAGTAAACA
1 GACAGTAAACA
90015457 TAAGATAGTC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.40, C:0.12, G:0.25, T:0.23
Consensus pattern (27 bp):
GACAGTAAACACGGGGTAGTTAACTAA
Found at i:90015492 original size:27 final size:27
Alignment explanation
Indices: 90015435--90015501 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 27
90015425 AAACACGTGG
* * *
90015435 TAGTTCACTAAGACAGTAAACATAAGA
1 TAGTCCACTAAGACACTAAAAATAAGA
* * *
90015462 TAGTCCACTAGGACACTAAAAATAGGT
1 TAGTCCACTAAGACACTAAAAATAAGA
*
90015489 TAGTCCTCTAAGA
1 TAGTCCACTAAGA
90015502 TGATAGTTGG
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.24
Consensus pattern (27 bp):
TAGTCCACTAAGACACTAAAAATAAGA
Found at i:90017470 original size:14 final size:14
Alignment explanation
Indices: 90017453--90017483 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
90017443 AGTAAAATAT
90017453 TTTCTGAAAAATGA
1 TTTCTGAAAAATGA
*
90017467 TTTCTGGAAAATGA
1 TTTCTGAAAAATGA
90017481 TTT
1 TTT
90017484 ACTTTTCTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.35, C:0.06, G:0.16, T:0.42
Consensus pattern (14 bp):
TTTCTGAAAAATGA
Found at i:90018773 original size:23 final size:23
Alignment explanation
Indices: 90018743--90018787 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
90018733 TATGATAACC
90018743 ATGATCCTTGTTTATAGAGAAAT
1 ATGATCCTTGTTTATAGAGAAAT
90018766 ATGATCCTTGTTTATAGAGAAA
1 ATGATCCTTGTTTATAGAGAAA
90018788 GATTGCCTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.38
Consensus pattern (23 bp):
ATGATCCTTGTTTATAGAGAAAT
Found at i:90020369 original size:6 final size:6
Alignment explanation
Indices: 90020358--90020382 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
90020348 TTTGCAACCC
90020358 AAGGGG AAGGGG AAGGGG AAGGGG A
1 AAGGGG AAGGGG AAGGGG AAGGGG A
90020383 GAAAGCGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.64, T:0.00
Consensus pattern (6 bp):
AAGGGG
Found at i:90028099 original size:40 final size:40
Alignment explanation
Indices: 90028037--90028249 Score: 331
Period size: 40 Copynumber: 5.3 Consensus size: 40
90028027 ATATTCGGAT
* * *
90028037 TATAACCGGGCTAAGTCTCGAAGGCATTTTTGCGAGTTAC
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
90028077 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
*
90028117 TACATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
** *
90028157 TATATCCGGGCTAAGTCTTGAAGGCCTTTGTGCGAGTTAC
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
*
90028197 TATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGC
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-C
90028237 TATATCC-GGCTAA
1 TATATCCGGGCTAA
90028250 AACTGAATGT
Statistics
Matches: 160, Mismatches: 12, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 8 0.05
40 152 0.95
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
Found at i:90036270 original size:40 final size:40
Alignment explanation
Indices: 90036217--90036375 Score: 264
Period size: 40 Copynumber: 4.0 Consensus size: 40
90036207 ATATTCGGAT
* *
90036217 TATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
90036257 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
* *
90036297 TATATCCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTTAC
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
* *
90036337 TATATCCGGGCTAAGTCCCGAAGGCCTTTGTGCAAGTTA
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA
90036376 AGTCCCGAAG
Statistics
Matches: 112, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 112 1.00
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.29
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
Found at i:90044546 original size:20 final size:20
Alignment explanation
Indices: 90044523--90044561 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
90044513 AAGACTTTAC
* *
90044523 TTTATTTTTATTTTTATTTG
1 TTTACTTTTATCTTTATTTG
90044543 TTTACTTTTATCTTTATTT
1 TTTACTTTTATCTTTATTT
90044562 ACCTTCTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.03, T:0.77
Consensus pattern (20 bp):
TTTACTTTTATCTTTATTTG
Found at i:90046648 original size:13 final size:13
Alignment explanation
Indices: 90046630--90046654 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
90046620 AGCCACCTCA
90046630 CACGGGCATGTCG
1 CACGGGCATGTCG
90046643 CACGGGCATGTC
1 CACGGGCATGTC
90046655 CCTGTCGAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.36, T:0.16
Consensus pattern (13 bp):
CACGGGCATGTCG
Found at i:90047447 original size:13 final size:13
Alignment explanation
Indices: 90047431--90047456 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
90047421 CTGTGCATTC
90047431 TTAGTTTAGTTAA
1 TTAGTTTAGTTAA
90047444 TTAGTTTAGTTAA
1 TTAGTTTAGTTAA
90047457 ACTAAATCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
TTAGTTTAGTTAA
Found at i:90048384 original size:16 final size:16
Alignment explanation
Indices: 90048363--90048394 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
90048353 CATGTCACTC
*
90048363 ACTTGAAAACCCTTAA
1 ACTTGAAAACACTTAA
90048379 ACTTGAAAACACTTAA
1 ACTTGAAAACACTTAA
90048395 GATTTATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.22, G:0.06, T:0.25
Consensus pattern (16 bp):
ACTTGAAAACACTTAA
Found at i:90049336 original size:18 final size:18
Alignment explanation
Indices: 90049313--90049353 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
90049303 GTATACTTAT
90049313 CATATGTTCATATATATA
1 CATATGTTCATATATATA
90049331 CATATGTTCATATATATA
1 CATATGTTCATATATATA
90049349 CATAT
1 CATAT
90049354 ACATAAACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.39, C:0.12, G:0.05, T:0.44
Consensus pattern (18 bp):
CATATGTTCATATATATA
Found at i:90050232 original size:27 final size:27
Alignment explanation
Indices: 90050202--90050284 Score: 97
Period size: 27 Copynumber: 3.3 Consensus size: 27
90050192 ATAATCTCGC
90050202 ATTTTCTCGATTTAGACCCGAATTTCG
1 ATTTTCTCGATTTAGACCCGAATTTCG
* *
90050229 ATTTTCTTGATCTA-A--C---TTTCG
1 ATTTTCTCGATTTAGACCCGAATTTCG
90050250 CATTTTCTCGATTTAGACCCGAATTTCG
1 -ATTTTCTCGATTTAGACCCGAATTTCG
90050278 ATTTTCT
1 ATTTTCT
90050285 TGATCTAACT
Statistics
Matches: 45, Mismatches: 4, Indels: 14
0.71 0.06 0.22
Matches are distributed among these distances:
21 5 0.11
22 12 0.27
23 1 0.02
24 1 0.02
25 1 0.02
26 1 0.02
27 19 0.42
28 5 0.11
ACGTcount: A:0.20, C:0.22, G:0.12, T:0.46
Consensus pattern (27 bp):
ATTTTCTCGATTTAGACCCGAATTTCG
Found at i:90050255 original size:49 final size:49
Alignment explanation
Indices: 90050198--90050296 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
90050188 GTCCATAATC
90050198 TCGCATTTTCTCGATTTAGACCCGAATTTCGATTTTCTTGATCTAACTT
1 TCGCATTTTCTCGATTTAGACCCGAATTTCGATTTTCTTGATCTAACTT
90050247 TCGCATTTTCTCGATTTAGACCCGAATTTCGATTTTCTTGATCTAACTT
1 TCGCATTTTCTCGATTTAGACCCGAATTTCGATTTTCTTGATCTAACTT
90050296 T
1 T
90050297 ACAAATATAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.20, C:0.22, G:0.12, T:0.45
Consensus pattern (49 bp):
TCGCATTTTCTCGATTTAGACCCGAATTTCGATTTTCTTGATCTAACTT
Found at i:90057494 original size:92 final size:95
Alignment explanation
Indices: 90057379--90057604 Score: 264
Period size: 92 Copynumber: 2.4 Consensus size: 95
90057369 CATATTTTGA
** * *
90057379 GAGTCAGTGTAAGACCATGTCTGGGACATGGCATCAGG-ATTGAGA-CGAGAGCTAGTATAAGA-
1 GAGTCAGTGTAAGACCATGTCTGGGACATGGCATC-GGTACGGAGAGCGAGAGCCAGTATAAAAC
*
90057441 CATGTCTGGGACAT-GCATCGGCTACGA-GAT
65 CATGTCTGGGACATGGCATCGACT-CGAGGAT
* * * *
90057471 GTGTCAGTGTAAGACCATATCTGGGACATGGCATCGGTACGGAGATGTGAGAGCCAGTGTAAAAC
1 GAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGTACGGAGA-GCGAGAGCCAGTATAAAAC
* *
90057536 CATTTCTGGGACATGGCATCGACTTGATGGAT
65 CATGTCTGGGACATGGCATCGACTCGA-GGAT
* *
90057568 GAGCCAGTGTAAGACCATGTCTGGGACGTGGCATCGG
1 GAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGG
90057605 CATTACACCT
Statistics
Matches: 112, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
91 2 0.02
92 38 0.34
94 13 0.12
95 15 0.13
96 8 0.07
97 36 0.32
ACGTcount: A:0.27, C:0.18, G:0.32, T:0.23
Consensus pattern (95 bp):
GAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGTACGGAGAGCGAGAGCCAGTATAAAACC
ATGTCTGGGACATGGCATCGACTCGAGGAT
Found at i:90057591 original size:47 final size:47
Alignment explanation
Indices: 90057377--90057603 Score: 207
Period size: 47 Copynumber: 4.8 Consensus size: 47
90057367 GCCATATTTT
*
90057377 GAGAGTCAGTGTAAGACCATGTCTGGGACATGGCATCAGGA-TTGA-GA
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC--GACTTGATGA
* * * *
90057424 CGAGAGCTAGTATAAGA-CATGTCTGGGACAT-GCATCGGC-T-ACGA
1 -GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGA
* * * ** *
90057468 GATGTGTCAGTGTAAGACCATATCTGGGACATGGCATCGGTACGGAGATGT
1 GA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-G-AC-TTGATGA
* *
90057519 GAGAGCCAGTGTAAAACCATTTCTGGGACATGGCATCGACTTGATG-
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGA
*
90057565 GATGAGCCAGTGTAAGACCATGTCTGGGACGTGGCATCG
1 GA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
90057604 GCATTACACC
Statistics
Matches: 146, Mismatches: 22, Indels: 23
0.76 0.12 0.12
Matches are distributed among these distances:
43 3 0.02
44 14 0.10
45 13 0.09
46 12 0.08
47 52 0.36
48 16 0.11
49 1 0.01
50 31 0.21
51 4 0.03
ACGTcount: A:0.27, C:0.18, G:0.32, T:0.22
Consensus pattern (47 bp):
GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGA
Found at i:90057591 original size:97 final size:91
Alignment explanation
Indices: 90057383--90057604 Score: 248
Period size: 97 Copynumber: 2.4 Consensus size: 91
90057373 TTTTGAGAGT
** * *
90057383 CAGTGTAAGACCATGTCTGGGACATGGCATCAGGATTGAGACGAGAGCTAGTATAAGACATGTCT
1 CAGTGTAAGACCATGTCTGGGACATGGCATC-GGACGGAGACGAGAGCCAGTATAAAACATGTCT
* * *
90057448 GGGACATGCATCGGCTACGAGATGTGT
65 GGGACATGCATCGACTACGAGATGAGC
* * * *
90057475 CAGTGTAAGACCATATCTGGGACATGGCATCGGTACGGAGATGTGAGAGCCAGTGTAAAACCATT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGG-ACGGAGA--CGAGAGCCAGTATAAAA-CATG
*
90057540 TCTGGGACATGGCATCGACT-TGATGGATGAGC
62 TCTGGGACAT-GCATCGACTACGA--GATGAGC
*
90057572 CAGTGTAAGACCATGTCTGGGACGTGGCATCGG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGG
90057605 CATTACACCT
Statistics
Matches: 109, Mismatches: 14, Indels: 9
0.83 0.11 0.07
Matches are distributed among these distances:
91 2 0.02
92 35 0.32
94 13 0.12
95 15 0.14
96 8 0.07
97 36 0.33
ACGTcount: A:0.27, C:0.18, G:0.32, T:0.23
Consensus pattern (91 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGACGGAGACGAGAGCCAGTATAAAACATGTCTG
GGACATGCATCGACTACGAGATGAGC
Found at i:90059542 original size:35 final size:35
Alignment explanation
Indices: 90059412--90059550 Score: 161
Period size: 35 Copynumber: 4.0 Consensus size: 35
90059402 CGATTCACAA
** * * * *
90059412 CTCAGTATGGTTAATACCATACCTATGTTTCACAA
1 CTCAGTATGGAAAATACCATACCTACGTATCATAG
* * *
90059447 CTCGGTATGGGAAATACCATACCTACGTATTATAG
1 CTCAGTATGGAAAATACCATACCTACGTATCATAG
* * * *
90059482 CTCGGTATAGAAAATACCTTACCTACATATCATAG
1 CTCAGTATGGAAAATACCATACCTACGTATCATAG
90059517 CTCAGTATGGAAAATACCATACCTACGTATCATA
1 CTCAGTATGGAAAATACCATACCTACGTATCATA
90059551 ACTTTACCAT
Statistics
Matches: 87, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 87 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (35 bp):
CTCAGTATGGAAAATACCATACCTACGTATCATAG
Found at i:90064697 original size:20 final size:19
Alignment explanation
Indices: 90064672--90064728 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 19
90064662 CATTAAATTA
90064672 AATTTAATATTAAGATAAT
1 AATTTAATATTAAGATAAT
90064691 CAATTTAATATTAA-ATTAAT
1 -AATTTAATATTAAGA-TAAT
**
90064711 AAAATAATATTAAGATAA
1 AATTTAATATTAAGATAA
90064729 ATATAAAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
19 15 0.45
20 18 0.55
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.39
Consensus pattern (19 bp):
AATTTAATATTAAGATAAT
Found at i:90064740 original size:68 final size:70
Alignment explanation
Indices: 90064617--90064752 Score: 186
Period size: 68 Copynumber: 2.0 Consensus size: 70
90064607 TGATTAAACT
* * ** * *
90064617 TAATCACTTTAATATTTCAATTAATCTAATATTTATCAAGATAAACATTAAATTAAATTTAATAT
1 TAATCAATTTAATATTTAAATTAATAAAATATATATCAAGATAAACATAAAATTAAATTTAATAT
90064682 TAAGA
66 TAAGA
* *
90064687 TAATCAATTTAATA-TTAAATTAATAAAATA-ATATTAAGATAAATATAAAATTAAATTTAATAT
1 TAATCAATTTAATATTTAAATTAATAAAATATATATCAAGATAAACATAAAATTAAATTTAATAT
90064750 TAA
66 TAA
90064753 ATCTATTAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
68 32 0.55
69 13 0.22
70 13 0.22
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.40
Consensus pattern (70 bp):
TAATCAATTTAATATTTAAATTAATAAAATATATATCAAGATAAACATAAAATTAAATTTAATAT
TAAGA
Found at i:90071106 original size:48 final size:48
Alignment explanation
Indices: 90071046--90071354 Score: 246
Period size: 48 Copynumber: 6.6 Consensus size: 48
90071036 ATATCGGTGC
* *
90071046 CGATGCCATGTTCCAAACATGGTCTTATACTATTCTACATGTCGAGAT
1 CGATGCCATGTTCCAAACATGGTCTTACACTATTCTACATATCGAGAT
*
90071094 CGATGCCATGTTCCAAACATGGTCTTACACTATCTCT-CATAT--AAATT
1 CGATGCCATGTTCCAAACATGGTCTTACACTAT-TCTACATATCGAGA-T
* ** **
90071141 CCGATGTCATGTTCCAAACATGGTCTTACACT-GGCTCACATATCGAGGC
1 -CGATGCCATGTTCCAAACATGGTCTTACACTATTCT-ACATATCGAGAT
*
90071190 CGATGCCATG-TCCGAAACATGGTCTTACACTAGCTCT-CATAT--A-A-
1 CGATGCCATGTTCC-AAACATGGTCTTACACTA-TTCTACATATCGAGAT
* *
90071234 --ATGCC----TCCAAACATGGTCTTACACTGGA-TC-ACATATCGTGGT
1 CGATGCCATGTTCCAAACATGGTCTTACACT--ATTCTACATATCGAGAT
* * *
90071276 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCT-CATAT--AAAT
1 CGATGCCATGTTCCAAACATGGTCTTACACTA-TTCTACATATCGAGAT
90071322 GCCGATGCCATGTTCCAAACATGGTCTTACACT
1 --CGATGCCATGTTCCAAACATGGTCTTACACT
90071355 GGCTCACATA
Statistics
Matches: 213, Mismatches: 20, Indels: 56
0.74 0.07 0.19
Matches are distributed among these distances:
38 24 0.11
39 3 0.01
40 1 0.00
42 5 0.02
44 5 0.02
46 7 0.03
47 4 0.02
48 158 0.74
49 3 0.01
50 3 0.01
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTTCCAAACATGGTCTTACACTATTCTACATATCGAGAT
Found at i:90071194 original size:96 final size:95
Alignment explanation
Indices: 90070994--90071364 Score: 440
Period size: 96 Copynumber: 3.9 Consensus size: 95
90070984 AGGGTAAGAT
* * * * * **
90070994 GTCGATGCCATGTCCCAGACATGGCCTTACATTGGCTCTCATATATCGGTGCCGATGCCATGTTC
1 GTCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATA--AAT-CCGATGCCATGTTC
* ** *
90071059 CAAACATGGTCTTATACT-ATTCTACATGTCGAG
63 CAAACATGGTCTTACACTGGCTC-ACATATCGAG
* * *
90071092 ATCGATGCCATGTTCCAAACATGGTCTTACACTATCTCTCATATAAATTCCGATGTCATGTTCCA
1 GTCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATAAA-TCCGATGCCATGTTCCA
90071157 AACATGGTCTTACACTGGCTCACATATCGAG
65 AACATGGTCTTACACTGGCTCACATATCGAG
*
90071188 GCCGATGCCATG-TCCGAAACATGGTCTTACACTAGCTCTCATAT-AA----ATGCC----TCCA
1 GTCGATGCCATGTTCC-AAACATGGTCTTACACTAGCTCTCATATAAATCCGATGCCATGTTCCA
* *
90071243 AACATGGTCTTACACTGGATCACATATCGTG
65 AACATGGTCTTACACTGGCTCACATATCGAG
*
90071274 GTCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCCA
1 GTCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATAAAT-CCGATGCCATGTTCCA
90071339 AACATGGTCTTACACTGGCTCACATA
65 AACATGGTCTTACACTGGCTCACATA
90071365 ACCCTAGTAT
Statistics
Matches: 236, Mismatches: 23, Indels: 30
0.82 0.08 0.10
Matches are distributed among these distances:
86 72 0.31
87 4 0.02
90 4 0.02
92 5 0.02
95 5 0.02
96 105 0.44
97 3 0.01
98 38 0.16
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.29
Consensus pattern (95 bp):
GTCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATAAATCCGATGCCATGTTCCAA
ACATGGTCTTACACTGGCTCACATATCGAG
Found at i:90071298 original size:86 final size:86
Alignment explanation
Indices: 90071153--90071324 Score: 308
Period size: 86 Copynumber: 2.0 Consensus size: 86
90071143 GATGTCATGT
* *
90071153 TCCAAACATGGTCTTACACTGGCTCACATATCGAGGCCGATGCCATGTCCGAAACATGGTCTTAC
1 TCCAAACATGGTCTTACACTGGATCACATATCGAGGCCGATGCCATGTCCCAAACATGGTCTTAC
90071218 ACTAGCTCTCATATAAATGCC
66 ACTAGCTCTCATATAAATGCC
* *
90071239 TCCAAACATGGTCTTACACTGGATCACATATCGTGGTCGATGCCATGTCCCAAACATGGTCTTAC
1 TCCAAACATGGTCTTACACTGGATCACATATCGAGGCCGATGCCATGTCCCAAACATGGTCTTAC
90071304 ACTAGCTCTCATATAAATGCC
66 ACTAGCTCTCATATAAATGCC
90071325 GATGCCATGT
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
86 82 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (86 bp):
TCCAAACATGGTCTTACACTGGATCACATATCGAGGCCGATGCCATGTCCCAAACATGGTCTTAC
ACTAGCTCTCATATAAATGCC
Found at i:90074125 original size:17 final size:18
Alignment explanation
Indices: 90074103--90074137 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
90074093 ATTAGAAACT
90074103 AAATCCAAAA-AGTTTAA
1 AAATCCAAAATAGTTTAA
90074120 AAATCCAAAATAGTTTAA
1 AAATCCAAAATAGTTTAA
90074138 TAAAACATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.57, C:0.11, G:0.06, T:0.26
Consensus pattern (18 bp):
AAATCCAAAATAGTTTAA
Found at i:90077039 original size:2 final size:2
Alignment explanation
Indices: 90077032--90077056 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
90077022 TCTAAAATTT
90077032 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
90077057 TAATTTTCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:90078183 original size:13 final size:14
Alignment explanation
Indices: 90078148--90078189 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
90078138 AGGAAAAAAA
90078148 TTATGTAAAAATA-
1 TTATGTAAAAATAT
*
90078161 -TATTTATAAAATAT
1 TTATGTA-AAAATAT
90078175 TTATGTAAAAATAT
1 TTATGTAAAAATAT
90078189 T
1 T
90078190 AATAGTATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
12 5 0.21
13 6 0.25
14 8 0.33
15 5 0.21
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (14 bp):
TTATGTAAAAATAT
Found at i:90096550 original size:40 final size:40
Alignment explanation
Indices: 90096495--90096847 Score: 354
Period size: 40 Copynumber: 8.8 Consensus size: 40
90096485 ATCTACCGAA
* * * **
90096495 CACACTAGACAGAAGCTCATAAGAGTTGATGCACCCAAAG
1 CACACCAGACAGAAGCTCATAAGAGCTGATCCACCGGAAG
* *
90096535 CACACCAGACAGAAGCTCATAAGAGCTAATCCAACCGTAA-
1 CACACCAGACAGAAGCTCATAAGAGCTGATCC-ACCGGAAG
* * * * *
90096575 CATACCAAACAGAAGCTCATAAGAGGTAATCCACCCGAAG
1 CACACCAGACAGAAGCTCATAAGAGCTGATCCACCGGAAG
*
90096615 CACACCAGACAGAAGCTCATAAGAGCTGATCCACCTGAAG
1 CACACCAGACAGAAGCTCATAAGAGCTGATCCACCGGAAG
* * * *
90096655 CACACCAAATAGAAGCTTATAAGAGCTGATCCACCTGAAG
1 CACACCAGACAGAAGCTCATAAGAGCTGATCCACCGGAAG
* *
90096695 GACACCAGACAGAAGCTCATAAGAGCTGATCCACCTGAAG
1 CACACCAGACAGAAGCTCATAAGAGCTGATCCACCGGAAG
* * * * * *
90096735 CACACTAGGA-AAAAGCTCACAAGAGTTGATCCAATCGTAA-
1 CACACCA-GACAGAAGCTCATAAGAGCTGATCC-ACCGGAAG
* * *
90096775 CACACCAAACAGAAGCTCATAAGAGCTGATCCAATC-GAAA
1 CACACCAGACAGAAGCTCATAAGAGCTGATCC-ACCGGAAG
** * *
90096815 CATGCCAAACAGAAGCTCATAAGAGTTGATCCA
1 CACACCAGACAGAAGCTCATAAGAGCTGATCCA
90096848 ATCGAAGCAC
Statistics
Matches: 267, Mismatches: 40, Indels: 13
0.83 0.12 0.04
Matches are distributed among these distances:
39 9 0.03
40 247 0.93
41 11 0.04
ACGTcount: A:0.41, C:0.27, G:0.18, T:0.14
Consensus pattern (40 bp):
CACACCAGACAGAAGCTCATAAGAGCTGATCCACCGGAAG
Found at i:90096610 original size:80 final size:80
Alignment explanation
Indices: 90096503--90096857 Score: 416
Period size: 80 Copynumber: 4.4 Consensus size: 80
90096493 AACACACTAG
* * *
90096503 ACAGAAGCTCATAAGAGTTGATGCACCCAAAGCACACCAGACAGAAGCTCATAAGAGCTAATCCA
1 ACAGAAGCTCATAAGAGTTGATCCACCCGAAGCACACCAGACAGAAGCTCATAAGAGCTGATCC-
*
90096568 ACC-GTAA-CATACCAA
65 ACCTG-AAGCACACCAA
* *
90096583 ACAGAAGCTCATAAGAGGTAATCCACCCGAAGCACACCAGACAGAAGCTCATAAGAGCTGATCCA
1 ACAGAAGCTCATAAGAGTTGATCCACCCGAAGCACACCAGACAGAAGCTCATAAGAGCTGATCCA
90096648 CCTGAAGCACACCAA
66 CCTGAAGCACACCAA
* * * * *
90096663 ATAGAAGCTTATAAGAGCTGATCCACCTGAAGGACACCAGACAGAAGCTCATAAGAGCTGATCCA
1 ACAGAAGCTCATAAGAGTTGATCCACCCGAAGCACACCAGACAGAAGCTCATAAGAGCTGATCCA
*
90096728 CCTGAAGCACACTAGGA
66 CCTGAAGCACACCA--A
* ** *
90096745 A-A-AAGCTCACAAGAGTTGATCCAATCGTAA-CACACCAAACAGAAGCTCATAAGAGCTGATCC
1 ACAGAAGCTCATAAGAGTTGATCCACCCG-AAGCACACCAGACAGAAGCTCATAAGAGCTGATCC
* * **
90096807 A-ATCGAAACATGCCAA
65 ACCT-GAAGCACACCAA
**
90096823 ACAGAAGCTCATAAGAGTTGATCCAATCGAAGCAC
1 ACAGAAGCTCATAAGAGTTGATCCACCCGAAGCAC
90096858 GCCAAATAGA
Statistics
Matches: 239, Mismatches: 27, Indels: 18
0.84 0.10 0.06
Matches are distributed among these distances:
78 2 0.01
79 9 0.04
80 223 0.93
81 3 0.01
82 2 0.01
ACGTcount: A:0.41, C:0.26, G:0.18, T:0.14
Consensus pattern (80 bp):
ACAGAAGCTCATAAGAGTTGATCCACCCGAAGCACACCAGACAGAAGCTCATAAGAGCTGATCCA
CCTGAAGCACACCAA
Found at i:90096708 original size:120 final size:119
Alignment explanation
Indices: 90096490--90096857 Score: 404
Period size: 120 Copynumber: 3.1 Consensus size: 119
90096480 GTTAGATCTA
* ** *
90096490 CCGAA-CACACTAGACAGAAGCTCATAAGAGTTGATGCACCCAAAGCACACCAGACAGAAGCTCA
1 CCGAAGCACACTAGACAGAAGCTCATAAGAGTTGATCCACCTGAAGCACACCAAACAGAAGCTCA
* * *
90096554 TAAGAGCTAATCCAACCGTAACATACCAAACAGAAGCTCATAAGAGGTAATCCAC
66 TAAGAGCTGATCC-ACCGTAACACACCAAACAGAAGCTCATAAGAGCTAATCCAC
* * * *
90096609 CCGAAGCACACCAGACAGAAGCTCATAAGAGCTGATCCACCTGAAGCACACCAAATAGAAGCTTA
1 CCGAAGCACACTAGACAGAAGCTCATAAGAGTTGATCCACCTGAAGCACACCAAACAGAAGCTCA
* * *
90096674 TAAGAGCTGATCCACC-TGAAGGACACCAGACAGAAGCTCATAAGAGCTGATCCAC
66 TAAGAGCTGATCCACCGT-AA-CACACCAAACAGAAGCTCATAAGAGCTAATCCAC
* * * *
90096729 CTGAAGCACACTAGGA-AAAAGCTCACAAGAGTTGATCCA-ATCGTAA-CACACCAAACAGAAGC
1 CCGAAGCACACTA-GACAGAAGCTCATAAGAGTTGATCCACCT-G-AAGCACACCAAACAGAAGC
* * ** * * *
90096791 TCATAAGAGCTGATCCAATCGAAACATGCCAAACAGAAGCTCATAAGAGTTGATCCAA
63 TCATAAGAGCTGATCC-ACCGTAACACACCAAACAGAAGCTCATAAGAGCTAATCCAC
*
90096849 TCGAAGCAC
1 CCGAAGCAC
90096858 GCCAAATAGA
Statistics
Matches: 209, Mismatches: 32, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
118 1 0.00
119 11 0.05
120 189 0.90
121 8 0.04
ACGTcount: A:0.41, C:0.27, G:0.18, T:0.14
Consensus pattern (119 bp):
CCGAAGCACACTAGACAGAAGCTCATAAGAGTTGATCCACCTGAAGCACACCAAACAGAAGCTCA
TAAGAGCTGATCCACCGTAACACACCAAACAGAAGCTCATAAGAGCTAATCCAC
Found at i:90100616 original size:51 final size:51
Alignment explanation
Indices: 90100540--90100678 Score: 140
Period size: 51 Copynumber: 2.7 Consensus size: 51
90100530 GGATGCCCGA
* * *
90100540 TGGCCTACACATAGTACCACCCTTGT-AGTCAAAGCTAACTTCTT-CACAAAG
1 TGGCCTTCACATAGTACCACACTTGTGA-CCAAAGCTAACTT-TTACACAAAG
* *
90100591 TGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTTACACATAG
1 TGGCCTTCACATAGTACCACACTTGTGACCAAAGCTAACTTTTACACAAAG
* * * * *
90100642 TGG-CTTGCACTTAGTGCCACACATGTGATCGAAGCTA
1 TGGCCTT-CACATAGTACCACACTTGTGACCAAAGCTA
90100679 TCGGGTATGC
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
50 5 0.07
51 69 0.92
52 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (51 bp):
TGGCCTTCACATAGTACCACACTTGTGACCAAAGCTAACTTTTACACAAAG
Found at i:90103512 original size:15 final size:14
Alignment explanation
Indices: 90103454--90103527 Score: 60
Period size: 15 Copynumber: 5.0 Consensus size: 14
90103444 AGAATTCAAG
*
90103454 ATAAGGAAATCCATA
1 ATAAAGAAATCCA-A
**
90103469 ATGGAGAAATCCAGA
1 ATAAAGAAATCCA-A
*
90103484 ATATAGAAATCCAA
1 ATAAAGAAATCCAA
90103498 CATAAAGAAATCCAA
1 -ATAAAGAAATCCAA
90103513 A-ACAAGAAAATCCAA
1 ATA-AAG-AAATCCAA
90103528 TCAGACTGAT
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
13 1 0.02
14 5 0.10
15 43 0.88
ACGTcount: A:0.57, C:0.16, G:0.12, T:0.15
Consensus pattern (14 bp):
ATAAAGAAATCCAA
Found at i:90107136 original size:50 final size:50
Alignment explanation
Indices: 90107009--90107197 Score: 180
Period size: 50 Copynumber: 3.7 Consensus size: 50
90106999 AGCTATATTT
* * * * * * *
90107009 TACACATAGTGGCTTGCACTTAGTACCACACATGTGATCGAAGCTATCGGG
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CCATCTGG
** * *
90107060 TATGCATAATAGCCTGCACTTAGTACTACACATGCGACCTAACCATCTGG
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGG
* * * * **
90107110 TACACGTAGTAGCTTGCACTTAGTACTACACACGTGACCTAAAACCATTTTA
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT--AACCATCTGG
* *
90107162 AACACATAGTAGCCTGCACATAGTACTACACATGTG
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTG
90107198 TTCTCACAAC
Statistics
Matches: 110, Mismatches: 26, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
50 39 0.35
51 33 0.30
52 38 0.35
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (50 bp):
TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGG
Found at i:90107180 original size:52 final size:50
Alignment explanation
Indices: 90107064--90107193 Score: 152
Period size: 52 Copynumber: 2.6 Consensus size: 50
90107054 ATCGGGTATG
* * **
90107064 CATAATAGCCTGCACTTAGTACTACACATGCGACCTAACCATCTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTGAAACA
* * * * *
90107114 CGTAGTAGCTTGCACTTAGTACTACACACGTGACCTAAAACCATTTTAAACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCT--AACCATCTGAAACA
*
90107166 CATAGTAGCCTGCACATAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
90107194 TGTGTTCTCA
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
50 31 0.47
52 35 0.53
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.25
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTGAAACA
Found at i:90114810 original size:15 final size:17
Alignment explanation
Indices: 90114779--90114810 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
90114769 ACTCGTATTC
90114779 ATATTGTCACTAAATTG
1 ATATTGTCACTAAATTG
90114796 ATATTGT-AC-AAATTG
1 ATATTGTCACTAAATTG
90114811 TTAAGTTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 2 0.13
17 7 0.47
ACGTcount: A:0.38, C:0.09, G:0.12, T:0.41
Consensus pattern (17 bp):
ATATTGTCACTAAATTG
Found at i:90134419 original size:46 final size:45
Alignment explanation
Indices: 90134361--90134582 Score: 148
Period size: 46 Copynumber: 4.8 Consensus size: 45
90134351 GGGTTATTGT
*
90134361 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATCATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATCA-GA
* * * * *
90134407 GAGCCAGTGTAAGACCATGTCTGGGATATGTCTTTGG-CA-TTGAGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACATG-CATCGGCCACATCAGA
** * * * *
90134452 TGAGTGCTGGTGTAAGACATGTCTGGGACATACATCGGCCTCGAGACACA
1 -GA--GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-A-TCAGA
* * * *
90134502 -AGTCGGTGTAAGACATGTCTGGGACATGCATCGGCTAC--GAGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATCAGA
* *
90134544 TGTGTCAGTGTAAGACCATGTCTGGGACATAGCATCGGC
1 -GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
90134583 ACCTTACGCC
Statistics
Matches: 137, Mismatches: 26, Indels: 26
0.72 0.14 0.14
Matches are distributed among these distances:
42 2 0.01
44 11 0.08
45 16 0.12
46 61 0.45
47 30 0.22
48 15 0.11
50 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.24
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATCAGA
Found at i:90148524 original size:12 final size:12
Alignment explanation
Indices: 90148494--90148526 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
90148484 TATATATTTT
90148494 AAAATT-ATATA
1 AAAATTAATATA
90148505 AAAA-TAATATA
1 AAAATTAATATA
90148516 AAAATTAATAT
1 AAAATTAATAT
90148527 GGGCGGGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:90149709 original size:21 final size:21
Alignment explanation
Indices: 90149671--90149710 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
90149661 AGCAATTGTG
**
90149671 ACTGTTAGTAAGCTGTTAGAA
1 ACTGTTAGTAAGAAGTTAGAA
*
90149692 ACTGTTAGTAATAAGTTAG
1 ACTGTTAGTAAGAAGTTAG
90149711 TAGCAGTTAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.07, G:0.23, T:0.35
Consensus pattern (21 bp):
ACTGTTAGTAAGAAGTTAGAA
Found at i:90152140 original size:28 final size:28
Alignment explanation
Indices: 90152100--90152158 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
90152090 ATTCAGTTCT
90152100 AGAGAATAGTTAATACTCAATTTGGGAA
1 AGAGAATAGTTAATACTCAATTTGGGAA
*
90152128 AGAGAATGGTTAATACTCAATTTGGGAA
1 AGAGAATAGTTAATACTCAATTTGGGAA
90152156 AGA
1 AGA
90152159 CATTAAACAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.42, C:0.07, G:0.24, T:0.27
Consensus pattern (28 bp):
AGAGAATAGTTAATACTCAATTTGGGAA
Found at i:90152941 original size:69 final size:69
Alignment explanation
Indices: 90152808--90152942 Score: 193
Period size: 69 Copynumber: 2.0 Consensus size: 69
90152798 TTCACTGTTT
* * *
90152808 TTTGGAAAATGATGTAGGTGCCTTGGCTCCTAGTAGTAGCACCTCTCCCCCCACACTTGGGTTGT
1 TTTGGAAAATGATGTAGGTGCCTTGGATCCTAGTAGCAGCACCTCTCCCCCCACACTCGGGTTGT
90152873 CACC
66 CACC
* *
90152877 TTTGGAAAATGATGTAGGTGCCTTGGATCAC-AGTAGCAGCACTTCTTCCCCCACAC-CGGTGTT
1 TTTGGAAAATGATGTAGGTGCCTTGGATC-CTAGTAGCAGCACCTCTCCCCCCACACTCGG-GTT
90152940 GTC
64 GTC
90152943 TACAACTTCG
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
68 2 0.03
69 56 0.95
70 1 0.02
ACGTcount: A:0.20, C:0.27, G:0.24, T:0.29
Consensus pattern (69 bp):
TTTGGAAAATGATGTAGGTGCCTTGGATCCTAGTAGCAGCACCTCTCCCCCCACACTCGGGTTGT
CACC
Found at i:90154621 original size:16 final size:16
Alignment explanation
Indices: 90154600--90154633 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
90154590 AAGTTAGGTG
90154600 AATGTTAGAGTTTGTT
1 AATGTTAGAGTTTGTT
90154616 AATGTTAGAGTTTGTT
1 AATGTTAGAGTTTGTT
90154632 AA
1 AA
90154634 AACAATTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.24, T:0.47
Consensus pattern (16 bp):
AATGTTAGAGTTTGTT
Found at i:90155632 original size:20 final size:20
Alignment explanation
Indices: 90155607--90155650 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
90155597 AATGAAAAAG
* *
90155607 AAAATTTAATTTTTTCTATA
1 AAAATTCAATTTTTCCTATA
90155627 AAAATTCAATTTTTCCTATA
1 AAAATTCAATTTTTCCTATA
90155647 AAAA
1 AAAA
90155651 CCTAAGTGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.45
Consensus pattern (20 bp):
AAAATTCAATTTTTCCTATA
Found at i:90157257 original size:22 final size:21
Alignment explanation
Indices: 90157227--90157270 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 21
90157217 ACACCAAAAC
*
90157227 AGGCTTTTAGCGGCGCTTTTTT
1 AGGCCTTTAGCGGCG-TTTTTT
90157249 AGGCCTTTAGCGGCGTTTTTT
1 AGGCCTTTAGCGGCGTTTTTT
90157270 A
1 A
90157271 ACGCCACTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.11, C:0.18, G:0.27, T:0.43
Consensus pattern (21 bp):
AGGCCTTTAGCGGCGTTTTTT
Found at i:90157502 original size:43 final size:43
Alignment explanation
Indices: 90157341--90157545 Score: 229
Period size: 42 Copynumber: 4.8 Consensus size: 43
90157331 GCGTCGCTAA
* * * *
90157341 CTTTAGCGGCGCTTTTCCCATAAACGCCACTAAAGACCATGAT
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGAC
* * *
90157384 ATTTAGCGGCGC--TTCCCTACAAATGCCACTAAAGACCAAGAC
1 CTTTAGCGGCGCTTTTCCC-ACAAACGCCGCTAAAGACCAAGAC
* * *
90157426 CTTTAGCGACGC-TTCCCCACAAACGTCGCTAAAGACCAAGAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGAC
* * * *
90157468 CTTTAGCGACGCTTTTCCCACAAACGCCGCTAAAGA-TATTGAG
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCA-AGAC
90157511 CTTTAGCGGCGCTTTTTCCCACAAACGCCGCTAAA
1 CTTTAGCGGCGC-TTTTCCCACAAACGCCGCTAAA
90157546 AATATATCTT
Statistics
Matches: 140, Mismatches: 17, Indels: 9
0.84 0.10 0.05
Matches are distributed among these distances:
41 5 0.04
42 64 0.46
43 49 0.35
44 22 0.16
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (43 bp):
CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAAGAC
Found at i:90157564 original size:15 final size:15
Alignment explanation
Indices: 90157544--90157573 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
90157534 AACGCCGCTA
*
90157544 AAAATATATCTTTTT
1 AAAATATATATTTTT
90157559 AAAATATATATTTTT
1 AAAATATATATTTTT
90157574 TTCAAATAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.53
Consensus pattern (15 bp):
AAAATATATATTTTT
Found at i:90157569 original size:17 final size:17
Alignment explanation
Indices: 90157542--90157585 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 17
90157532 CAAACGCCGC
90157542 TAAAA-ATATATCTTTT
1 TAAAATATATATCTTTT
*
90157558 TAAAATATATATTTTTT
1 TAAAATATATATCTTTT
*
90157575 TCAAATA-ATAT
1 TAAAATATATAT
90157586 TTATTTCTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 9 0.36
17 16 0.64
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (17 bp):
TAAAATATATATCTTTT
Found at i:90157592 original size:16 final size:17
Alignment explanation
Indices: 90157547--90157592 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
90157537 GCCGCTAAAA
*
90157547 ATATATCTT-TTTAAAAT
1 ATATAT-TTATTTCAAAT
*
90157564 ATATATTTTTTTCAAAT
1 ATATATTTATTTCAAAT
90157581 A-ATATTTATTTC
1 ATATATTTATTTC
90157593 TATGATAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
16 12 0.46
17 14 0.54
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.57
Consensus pattern (17 bp):
ATATATTTATTTCAAAT
Found at i:90157885 original size:43 final size:43
Alignment explanation
Indices: 90157819--90157904 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
90157809 ATATATGCAA
* * * *
90157819 GGTAATAAAATATACAATGCATTTTCTTAATCAAGTAAATCTT
1 GGTAATAAAAGATACAATACATTTACTTAATCAAGGAAATCTT
*
90157862 GGTAATAAAAGATATAATACATTTACTTAATCAAGGAAATCTT
1 GGTAATAAAAGATACAATACATTTACTTAATCAAGGAAATCTT
90157905 ATAATGAACT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.35
Consensus pattern (43 bp):
GGTAATAAAAGATACAATACATTTACTTAATCAAGGAAATCTT
Found at i:90162415 original size:7 final size:7
Alignment explanation
Indices: 90162405--90162463 Score: 73
Period size: 7 Copynumber: 8.4 Consensus size: 7
90162395 CACTAACTCT
*
90162405 TAACCTC
1 TAACCCC
**
90162412 TAACCTT
1 TAACCCC
90162419 TAACCCC
1 TAACCCC
90162426 TAACCCC
1 TAACCCC
90162433 TAACCCC
1 TAACCCC
90162440 TAACCCC
1 TAACCCC
**
90162447 TAACTAC
1 TAACCCC
90162454 TAACCCC
1 TAACCCC
90162461 TAA
1 TAA
90162464 ATCTTATTTA
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 45 1.00
ACGTcount: A:0.32, C:0.46, G:0.00, T:0.22
Consensus pattern (7 bp):
TAACCCC
Found at i:90162456 original size:14 final size:14
Alignment explanation
Indices: 90162395--90162463 Score: 66
Period size: 14 Copynumber: 4.9 Consensus size: 14
90162385 AACCCTAAAT
* *
90162395 CACTAACTCTTAAC
1 CACTAACCCCTAAC
* **
90162409 CTCTAACCTTTAAC
1 CACTAACCCCTAAC
*
90162423 CCCTAACCCCTAAC
1 CACTAACCCCTAAC
*
90162437 CCCTAACCCCTAAC
1 CACTAACCCCTAAC
*
90162451 TACTAACCCCTAA
1 CACTAACCCCTAA
90162464 ATCTTATTTA
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 47 1.00
ACGTcount: A:0.32, C:0.45, G:0.00, T:0.23
Consensus pattern (14 bp):
CACTAACCCCTAAC
Found at i:90163208 original size:41 final size:41
Alignment explanation
Indices: 90163151--90163394 Score: 380
Period size: 41 Copynumber: 6.0 Consensus size: 41
90163141 TCAAAAGCGG
* *
90163151 GCATTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGGCCCAA
1 GCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCGA
*
90163192 GCATTAGCGGCGCTTTTTAAAAAACGCCGCTAAAGGCCCGA
1 GCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCGA
*
90163233 GCATTAGCGGCGCTTATTCAAAAACGCCGCTAAAGGCCCGA
1 GCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCGA
* *
90163274 GCATTAGCGGCGCTTCTTCACAAACGCCGCTAAAGGCCCGA
1 GCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCGA
* * * *
90163315 GCATTAGCGTCGCTTATTCAAAAATGCCGCTAAAGGCCCGT
1 GCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCGA
* *
90163356 GAATTAGCGGCGCTTTTTTAAAAACGCCGCTAAAGGCCC
1 GCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCC
90163395 CAAAAACTCA
Statistics
Matches: 186, Mismatches: 17, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 186 1.00
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.20
Consensus pattern (41 bp):
GCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCGA
Found at i:90163496 original size:39 final size:39
Alignment explanation
Indices: 90163449--90163523 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 39
90163439 CACTTTTTGG
*
90163449 AAAACGCCGGTAATGCTT-ATTTTTAGCT-GCGTTTTCCA
1 AAAACGCCGCTAATGCTTGATTTTTAG-TGGCGTTTTCCA
90163487 AAAAGCGCCGCTAATGCTTGATTTTTAGTGGCGTTTT
1 AAAA-CGCCGCTAATGCTTGATTTTTAGTGGCGTTTT
90163524 TTATCCAAAC
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
38 4 0.12
39 14 0.42
40 15 0.45
ACGTcount: A:0.23, C:0.19, G:0.21, T:0.37
Consensus pattern (39 bp):
AAAACGCCGCTAATGCTTGATTTTTAGTGGCGTTTTCCA
Found at i:90167145 original size:111 final size:111
Alignment explanation
Indices: 90166945--90167201 Score: 320
Period size: 111 Copynumber: 2.3 Consensus size: 111
90166935 ACATGTAATT
** * * ** *
90166945 ACATATCAATGCC-ACTGTCCCAAATAGGGTCTTACTCGTAAACACATATCGGAATCACCTATCG
1 ACATATCAATGCCAAC-GTATCAAACATGGTCTTACTCACAAACACATATCGGAATCACATATCG
*
90167009 ATGCCAACGTATTAAAGTGGCCTTACTCGCACACACATATCAGAATC
65 ATGCCAACGTATTAAAGTAGCCTTACTCGCACACACATATCAGAATC
* * * * *
90167056 ACATATCGATGCCAACGTGTCAAACGTGGTCTTACTCACACACACATATCGGTATCACATATC-A
1 ACATATCAATGCCAACGTATCAAACATGGTCTTACTCACAAACACATATCGGAATCACATATCGA
* * *
90167120 TGTCAACGTATTAAACGTAGTCTTACTTGCACACACATATCAGAATC
66 TGCCAACGTATTAAA-GTAGCCTTACTCGCACACACATATCAGAATC
* *
90167167 ACATATTAATGCCAACGTATTAAACATGGTCTTAC
1 ACATATCAATGCCAACGTATCAAACATGGTCTTAC
90167202 ACGTAATCAT
Statistics
Matches: 124, Mismatches: 20, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
110 15 0.12
111 107 0.86
112 2 0.02
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.26
Consensus pattern (111 bp):
ACATATCAATGCCAACGTATCAAACATGGTCTTACTCACAAACACATATCGGAATCACATATCGA
TGCCAACGTATTAAAGTAGCCTTACTCGCACACACATATCAGAATC
Found at i:90167216 original size:56 final size:56
Alignment explanation
Indices: 90166972--90167201 Score: 302
Period size: 55 Copynumber: 4.1 Consensus size: 56
90166962 TCCCAAATAG
* * * *
90166972 GGTCTTACTCGTAAACACATATCGGAATCACCTATCGATGCCAACGTATTAAA-GT
1 GGTCTTACTCGCACACACATATCAGAATCACATATCGATGCCAACGTATTAAACGT
* * *
90167027 GGCCTTACTCGCACACACATATCAGAATCACATATCGATGCCAACGTGTCAAACGT
1 GGTCTTACTCGCACACACATATCAGAATCACATATCGATGCCAACGTATTAAACGT
* * * *
90167083 GGTCTTACTCACACACACATATCGGTATCACATATC-ATGTCAACGTATTAAACGT
1 GGTCTTACTCGCACACACATATCAGAATCACATATCGATGCCAACGTATTAAACGT
* * ** *
90167138 AGTCTTACTTGCACACACATATCAGAATCACATATTAATGCCAACGTATTAAACAT
1 GGTCTTACTCGCACACACATATCAGAATCACATATCGATGCCAACGTATTAAACGT
90167194 GGTCTTAC
1 GGTCTTAC
90167202 ACGTAATCAT
Statistics
Matches: 150, Mismatches: 23, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
55 92 0.61
56 58 0.39
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (56 bp):
GGTCTTACTCGCACACACATATCAGAATCACATATCGATGCCAACGTATTAAACGT
Found at i:90169943 original size:14 final size:14
Alignment explanation
Indices: 90169932--90169959 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
90169922 TTTTCTAATG
90169932 ATACTATTCTAACA
1 ATACTATTCTAACA
90169946 ATACTATTCTAACA
1 ATACTATTCTAACA
90169960 TGTAATTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.21, G:0.00, T:0.36
Consensus pattern (14 bp):
ATACTATTCTAACA
Found at i:90170585 original size:6 final size:6
Alignment explanation
Indices: 90170571--90170639 Score: 57
Period size: 6 Copynumber: 11.5 Consensus size: 6
90170561 GGGGCATACA
* * * * * *
90170571 AGCCAG AGCCCG AGCCAG AGCTAG AGCCAA AGCCCG AGCCAA AGCCAA
1 AGCCAG AGCCAG AGCCAG AGCCAG AGCCAG AGCCAG AGCCAG AGCCAG
* * *
90170619 AGCTAG AGCTAG AGCCCG AGC
1 AGCCAG AGCCAG AGCCAG AGC
90170640 TGTCGCATAC
Statistics
Matches: 50, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
6 50 1.00
ACGTcount: A:0.33, C:0.33, G:0.29, T:0.04
Consensus pattern (6 bp):
AGCCAG
Found at i:90170610 original size:30 final size:30
Alignment explanation
Indices: 90170583--90170639 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
90170573 CCAGAGCCCG
*
90170583 AGCCAGAGCTAGAGCCAAAGCCCGAGCCAA
1 AGCCAAAGCTAGAGCCAAAGCCCGAGCCAA
* *
90170613 AGCCAAAGCTAGAGCTAGAGCCCGAGC
1 AGCCAAAGCTAGAGCCAAAGCCCGAGC
90170640 TGTCGCATAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.35, C:0.32, G:0.28, T:0.05
Consensus pattern (30 bp):
AGCCAAAGCTAGAGCCAAAGCCCGAGCCAA
Found at i:90170640 original size:18 final size:18
Alignment explanation
Indices: 90170583--90170634 Score: 68
Period size: 18 Copynumber: 2.9 Consensus size: 18
90170573 CCAGAGCCCG
90170583 AGCCAGAGCTAGAGCCAA
1 AGCCAGAGCTAGAGCCAA
* * *
90170601 AGCCCGAGCCAAAGCCAA
1 AGCCAGAGCTAGAGCCAA
*
90170619 AGCTAGAGCTAGAGCC
1 AGCCAGAGCTAGAGCC
90170635 CGAGCTGTCG
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.37, C:0.31, G:0.27, T:0.06
Consensus pattern (18 bp):
AGCCAGAGCTAGAGCCAA
Found at i:90171163 original size:49 final size:49
Alignment explanation
Indices: 90171104--90171243 Score: 235
Period size: 49 Copynumber: 2.9 Consensus size: 49
90171094 GTATTTATTT
* *
90171104 AATTAGATTAATTGAAACATTAAAACTTGGAACAAACTTTGTGGTCATA
1 AATTAGATTAATTGCAACATTAAAACTTGGAACAAACTTTATGGTCATA
* *
90171153 AATTAAATTAATTGCAACATTAAAACTTGGAATAAACTTTATGGTCATA
1 AATTAGATTAATTGCAACATTAAAACTTGGAACAAACTTTATGGTCATA
*
90171202 AATTAGATTATTTGCAACATTAAAACTTGGAACAAACTTTAT
1 AATTAGATTAATTGCAACATTAAAACTTGGAACAAACTTTAT
90171244 AATATAAATT
Statistics
Matches: 84, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 84 1.00
ACGTcount: A:0.44, C:0.11, G:0.11, T:0.34
Consensus pattern (49 bp):
AATTAGATTAATTGCAACATTAAAACTTGGAACAAACTTTATGGTCATA
Found at i:90174994 original size:4 final size:4
Alignment explanation
Indices: 90174985--90175024 Score: 53
Period size: 4 Copynumber: 9.5 Consensus size: 4
90174975 AAAAATGCAT
*
90174985 TTTC TTTC TTTC TTTC TTCTC TTTTC TTTT TTTC TTTC TT
1 TTTC TTTC TTTC TTTC TT-TC -TTTC TTTC TTTC TTTC TT
90175025 CTCCCCCTCT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
4 26 0.81
5 4 0.12
6 2 0.06
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTC
Found at i:90175012 original size:22 final size:22
Alignment explanation
Indices: 90174984--90175027 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
90174974 TAAAAATGCA
90174984 TTTTCTTTCTTTCTTTCTTCTC
1 TTTTCTTTCTTTCTTTCTTCTC
*
90175006 TTTTCTTTTTTTCTTTCTTCTC
1 TTTTCTTTCTTTCTTTCTTCTC
90175028 CCCCTCTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (22 bp):
TTTTCTTTCTTTCTTTCTTCTC
Found at i:90182180 original size:25 final size:25
Alignment explanation
Indices: 90182152--90182256 Score: 156
Period size: 25 Copynumber: 4.2 Consensus size: 25
90182142 TTACAAAGAG
** *
90182152 AAAGTCCTAATCTAATTCCTAATTT
1 AAAGTCCTAATAGAATTCTTAATTT
*
90182177 AAAGTACTAATAGAATTCTTAATTT
1 AAAGTCCTAATAGAATTCTTAATTT
*
90182202 AAAGCCCTAATAGAATTCTTAATTT
1 AAAGTCCTAATAGAATTCTTAATTT
*
90182227 AAAGCCCTAATAGAATTCTTAATTT
1 AAAGTCCTAATAGAATTCTTAATTT
90182252 AAAGT
1 AAAGT
90182257 TTATAAAAAA
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 73 1.00
ACGTcount: A:0.41, C:0.14, G:0.08, T:0.37
Consensus pattern (25 bp):
AAAGTCCTAATAGAATTCTTAATTT
Found at i:90182695 original size:25 final size:25
Alignment explanation
Indices: 90182667--90182721 Score: 110
Period size: 25 Copynumber: 2.2 Consensus size: 25
90182657 TTACAAAGAG
90182667 AAAGTCCTAATAGAATTCTTAATTT
1 AAAGTCCTAATAGAATTCTTAATTT
90182692 AAAGTCCTAATAGAATTCTTAATTT
1 AAAGTCCTAATAGAATTCTTAATTT
90182717 AAAGT
1 AAAGT
90182722 TTATAAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.42, C:0.11, G:0.09, T:0.38
Consensus pattern (25 bp):
AAAGTCCTAATAGAATTCTTAATTT
Found at i:90183160 original size:25 final size:25
Alignment explanation
Indices: 90183132--90183186 Score: 101
Period size: 25 Copynumber: 2.2 Consensus size: 25
90183122 TTACAAAGAG
90183132 AAAGTCCTAATAGAATTCTTAATTT
1 AAAGTCCTAATAGAATTCTTAATTT
*
90183157 AAAGCCCTAATAGAATTCTTAATTT
1 AAAGTCCTAATAGAATTCTTAATTT
90183182 AAAGT
1 AAAGT
90183187 TTATAAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.42, C:0.13, G:0.09, T:0.36
Consensus pattern (25 bp):
AAAGTCCTAATAGAATTCTTAATTT
Found at i:90183625 original size:467 final size:465
Alignment explanation
Indices: 90182202--90184012 Score: 3532
Period size: 465 Copynumber: 3.9 Consensus size: 465
90182192 TTCTTAATTT
*
90182202 AAAGCCCTAATAGAATTCTTAATTTAAAGCCCTAATAGAATTCTTAATTTAAAGTTTATAAAAAA
1 AAAGTCCTAATAGAATTCTTAATTTAAAGCCCTAATAGAATTCTTAATTTAAAGTTTATAAAAAA
90182267 ACTAGTAAAACTAAAACTCCTAAAGAAATTAAATCAATGTAAAACTCTAATTCCTATTCCTTCTT
66 ACTAGTAAAACTAAAACTCCTAAAGAAATTAAATCAATGTAAAACTCTAATTCCTATTCCTTCTT
90182332 TGATATTGTTTTCCAATGAAAACATCTTATCAGAGTGTCAAATCTGGTGATATGGCTTTATTTTT
131 TGATATTGTTTTCCAATGAAAACATCTTATCAGAGTGTCAAATCTGGTGATATGGCTTTATTTTT
90182397 GTTTAGTTGGTATATACAATTCCAAGCCACTGAATCTCAAGAGAGAAAGGGTAGTTGTGAGCATT
196 GTTTAGTTGGTATATACAATTCCAAGCCACTGAATCTCAAGAGAGAAAGGGTAGTTGTGAGCATT
90182462 GATCCAAATTCCCTGCCAATTAGGTGCTTTGGAGAGTGGACTATTGGGGCACCATGAGGGCAAAG
261 GATCCAAATTCCCTGCCAATTAGGTGCTTTGGAGAGTGGACTATTGGGGCACCATGAGGGCAAAG
90182527 TTCTATTATGAAATAAAGCAGGCAGCATTTGAAATTAGAGGTTATGTATTGATGTTTCAAAAGGA
326 TTCTATTATGAAATAAAGCAGGCAGCATTTGAAATTAGAGGTTATGTATTGATGTTTCAAAAGGA
90182592 CAAGAAAATTTCATTTGAAATTTTTTACTTTATTTCATATTGACAGCCTTTTTATAAGCTGTTAA
391 CAAGAAAATTTCATTTGAAATTTTTTACTTTATTTCATATTGACAGCCTTTTTATAAGCTGTTAA
90182657 TTACAAAGAG
456 TTACAAAGAG
*
90182667 AAAGTCCTAATAGAATTCTTAATTTAAAGTCCTAATAGAATTCTTAATTTAAAGTTTATAAAAAA
1 AAAGTCCTAATAGAATTCTTAATTTAAAGCCCTAATAGAATTCTTAATTTAAAGTTTATAAAAAA
90182732 ACTAGTAAAACTAAAACTCCTAAAGAAATTAAATCAATGTAAAACTCTAATTCCTATTCCTTCTT
66 ACTAGTAAAACTAAAACTCCTAAAGAAATTAAATCAATGTAAAACTCTAATTCCTATTCCTTCTT
*
90182797 TGATATTGTTTTCTAATGAAAACATCTTATCAGAGTGTCAAATCTGGTGATATGGCTTTATTTTT
131 TGATATTGTTTTCCAATGAAAACATCTTATCAGAGTGTCAAATCTGGTGATATGGCTTTATTTTT
90182862 GTTTAGTTGGTATATACAATTCCAAGCCACTGAATCTCAAGAGAGAAAGGGTAGTTGTGAGCATT
196 GTTTAGTTGGTATATACAATTCCAAGCCACTGAATCTCAAGAGAGAAAGGGTAGTTGTGAGCATT
90182927 GATCCAAATTCCCTGCCAATTAGGTGCTTTGGAGAGTGGACTATTGGGGCACCATGAGGGCAAAG
261 GATCCAAATTCCCTGCCAATTAGGTGCTTTGGAGAGTGGACTATTGGGGCACCATGAGGGCAAAG
90182992 TTCTATTATGAAATAAAGCAGGCAGCATTTGAAATTAGAGGTTATGTATTGATGTTTCAAAAGGA
326 TTCTATTATGAAATAAAGCAGGCAGCATTTGAAATTAGAGGTTATGTATTGATGTTTCAAAAGGA
90183057 CAAGAAAATTTCATTTGAAATTTTTTACTTTATTTCATATTGACAGCCTTTTTATAAGCTGTTAA
391 CAAGAAAATTTCATTTGAAATTTTTTACTTTATTTCATATTGACAGCCTTTTTATAAGCTGTTAA
90183122 TTACAAAGAG
456 TTACAAAGAG
90183132 AAAGTCCTAATAGAATTCTTAATTTAAAGCCCTAATAGAATTCTTAATTTAAAGTTTATAAAAAA
1 AAAGTCCTAATAGAATTCTTAATTTAAAGCCCTAATAGAATTCTTAATTTAAAGTTTATAAAAAA
*
90183197 ACTAGTAAAACTAAAACTCCTAAAGAAATTAAATCAATGTAAAACTCTAATTCCTATTCCTTTTT
66 ACTAGTAAAACTAAAACTCCTAAAGAAATTAAATCAATGTAAAACTCTAATTCCTATTCCTTCTT
90183262 TGATATTGTTTTCCAATGAAAACATCTTATCAGAGTGTCAAATCTGGTGATATGGCTTTATTTTT
131 TGATATTGTTTTCCAATGAAAACATCTTATCAGAGTGTCAAATCTGGTGATATGGCTTTATTTTT
90183327 GTTTAGTTGGTATATACAATTCCAAGCCACTGAATCTCTCAAGAGAGAAAGGGTAGTTGTGAGCA
196 GTTTAGTTGGTATATACAATTCCAAGCCACTGAA--TCTCAAGAGAGAAAGGGTAGTTGTGAGCA
*
90183392 TTGATCCAAATTCCTTGCCAATTAGGTGCTTTGGAGAGTGGACTATTGGGGCACCATGAGGGCAA
259 TTGATCCAAATTCCCTGCCAATTAGGTGCTTTGGAGAGTGGACTATTGGGGCACCATGAGGGCAA
90183457 AGTTCTATTATGAAATAAAGCAGGCAGCATTTGAAATTAGAGGTTATGTATTGATGTTTCAAAAG
324 AGTTCTATTATGAAATAAAGCAGGCAGCATTTGAAATTAGAGGTTATGTATTGATGTTTCAAAAG
*
90183522 GACAAGAAAATTTCATTTGAAATTTTTTACTTTATTTCATATTGACAGCCCTTTTATAAGCTGTT
389 GACAAGAAAATTTCATTTGAAATTTTTTACTTTATTTCATATTGACAGCCTTTTTATAAGCTGTT
90183587 AATTACAAAGAG
454 AATTACAAAGAG
90183599 AAAGTCCTAATAGAATTCTTAATTTAAAGCCCTAATAGAATTCTTAATTTAAAGTTTATAAAAAA
1 AAAGTCCTAATAGAATTCTTAATTTAAAGCCCTAATAGAATTCTTAATTTAAAGTTTATAAAAAA
90183664 ACTAGTAAAACTAAAACTCCTAAAGAAATTAAATCAATGTAAAACTCTAATTCCTATTCCTTCTT
66 ACTAGTAAAACTAAAACTCCTAAAGAAATTAAATCAATGTAAAACTCTAATTCCTATTCCTTCTT
90183729 TGATATTGTTTTCCAATGAAAACATCTTATCAGAGTGTCAAATCTGGTGATATGGCTTTATTTTT
131 TGATATTGTTTTCCAATGAAAACATCTTATCAGAGTGTCAAATCTGGTGATATGGCTTTATTTTT
*
90183794 GTTTAGTTGGTATATACAATTTCAAGCCACTGAATCTCAAGAGAGAAAGGGTAGTTGTGAGCATT
196 GTTTAGTTGGTATATACAATTCCAAGCCACTGAATCTCAAGAGAGAAAGGGTAGTTGTGAGCATT
*
90183859 GATCCAAATTCCCTGCCAATTAGGTGCTTTGGAGAGTGGACTATTGGGGCACCATGAGGGTAAAG
261 GATCCAAATTCCCTGCCAATTAGGTGCTTTGGAGAGTGGACTATTGGGGCACCATGAGGGCAAAG
90183924 TTCTATTATGAAATAAAGCAGGCAGCATTTGAAATTAGAGGTTATGTATTGATGTTTCAAAAGGA
326 TTCTATTATGAAATAAAGCAGGCAGCATTTGAAATTAGAGGTTATGTATTGATGTTTCAAAAGGA
90183989 CAAGAAAATTTCATTTGAAATTTT
391 CAAGAAAATTTCATTTGAAATTTT
90184013 ATTTGGTTTC
Statistics
Matches: 1332, Mismatches: 12, Indels: 4
0.99 0.01 0.00
Matches are distributed among these distances:
465 871 0.65
467 461 0.35
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34
Consensus pattern (465 bp):
AAAGTCCTAATAGAATTCTTAATTTAAAGCCCTAATAGAATTCTTAATTTAAAGTTTATAAAAAA
ACTAGTAAAACTAAAACTCCTAAAGAAATTAAATCAATGTAAAACTCTAATTCCTATTCCTTCTT
TGATATTGTTTTCCAATGAAAACATCTTATCAGAGTGTCAAATCTGGTGATATGGCTTTATTTTT
GTTTAGTTGGTATATACAATTCCAAGCCACTGAATCTCAAGAGAGAAAGGGTAGTTGTGAGCATT
GATCCAAATTCCCTGCCAATTAGGTGCTTTGGAGAGTGGACTATTGGGGCACCATGAGGGCAAAG
TTCTATTATGAAATAAAGCAGGCAGCATTTGAAATTAGAGGTTATGTATTGATGTTTCAAAAGGA
CAAGAAAATTTCATTTGAAATTTTTTACTTTATTTCATATTGACAGCCTTTTTATAAGCTGTTAA
TTACAAAGAG
Found at i:90183627 original size:25 final size:25
Alignment explanation
Indices: 90183599--90183653 Score: 101
Period size: 25 Copynumber: 2.2 Consensus size: 25
90183589 TTACAAAGAG
90183599 AAAGTCCTAATAGAATTCTTAATTT
1 AAAGTCCTAATAGAATTCTTAATTT
*
90183624 AAAGCCCTAATAGAATTCTTAATTT
1 AAAGTCCTAATAGAATTCTTAATTT
90183649 AAAGT
1 AAAGT
90183654 TTATAAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.42, C:0.13, G:0.09, T:0.36
Consensus pattern (25 bp):
AAAGTCCTAATAGAATTCTTAATTT
Found at i:90184008 original size:932 final size:930
Alignment explanation
Indices: 90182202--90184012 Score: 3532
Period size: 932 Copynumber: 1.9 Consensus size: 930
90182192 TTCTTAATTT
90182202 AAAGCCCTAATAGAATTCTTAATTTAAAGCCCTAATAGAATTCTTAATTTAAAGTTTATAAAAAA
1 AAAGCCCTAATAGAATTCTTAATTTAAAGCCCTAATAGAATTCTTAATTTAAAGTTTATAAAAAA
90182267 ACTAGTAAAACTAAAACTCCTAAAGAAATTAAATCAATGTAAAACTCTAATTCCTATTCCTTCTT
66 ACTAGTAAAACTAAAACTCCTAAAGAAATTAAATCAATGTAAAACTCTAATTCCTATTCCTTCTT
90182332 TGATATTGTTTTCCAATGAAAACATCTTATCAGAGTGTCAAATCTGGTGATATGGCTTTATTTTT
131 TGATATTGTTTTCCAATGAAAACATCTTATCAGAGTGTCAAATCTGGTGATATGGCTTTATTTTT
90182397 GTTTAGTTGGTATATACAATTCCAAGCCACTGAATCTCAAGAGAGAAAGGGTAGTTGTGAGCATT
196 GTTTAGTTGGTATATACAATTCCAAGCCACTGAATCTCAAGAGAGAAAGGGTAGTTGTGAGCATT
90182462 GATCCAAATTCCCTGCCAATTAGGTGCTTTGGAGAGTGGACTATTGGGGCACCATGAGGGCAAAG
261 GATCCAAATTCCCTGCCAATTAGGTGCTTTGGAGAGTGGACTATTGGGGCACCATGAGGGCAAAG
90182527 TTCTATTATGAAATAAAGCAGGCAGCATTTGAAATTAGAGGTTATGTATTGATGTTTCAAAAGGA
326 TTCTATTATGAAATAAAGCAGGCAGCATTTGAAATTAGAGGTTATGTATTGATGTTTCAAAAGGA
*
90182592 CAAGAAAATTTCATTTGAAATTTTTTACTTTATTTCATATTGACAGCCTTTTTATAAGCTGTTAA
391 CAAGAAAATTTCATTTGAAATTTTTTACTTTATTTCATATTGACAGCCCTTTTATAAGCTGTTAA
*
90182657 TTACAAAGAGAAAGTCCTAATAGAATTCTTAATTTAAAGTCCTAATAGAATTCTTAATTTAAAGT
456 TTACAAAGAGAAAGTCCTAATAGAATTCTTAATTTAAAGCCCTAATAGAATTCTTAATTTAAAGT
90182722 TTATAAAAAAACTAGTAAAACTAAAACTCCTAAAGAAATTAAATCAATGTAAAACTCTAATTCCT
521 TTATAAAAAAACTAGTAAAACTAAAACTCCTAAAGAAATTAAATCAATGTAAAACTCTAATTCCT
*
90182787 ATTCCTTCTTTGATATTGTTTTCTAATGAAAACATCTTATCAGAGTGTCAAATCTGGTGATATGG
586 ATTCCTTCTTTGATATTGTTTTCCAATGAAAACATCTTATCAGAGTGTCAAATCTGGTGATATGG
90182852 CTTTATTTTTGTTTAGTTGGTATATACAATTCCAAGCCACTGAATCTCAAGAGAGAAAGGGTAGT
651 CTTTATTTTTGTTTAGTTGGTATATACAATTCCAAGCCACTGAATCTCAAGAGAGAAAGGGTAGT
90182917 TGTGAGCATTGATCCAAATTCCCTGCCAATTAGGTGCTTTGGAGAGTGGACTATTGGGGCACCAT
716 TGTGAGCATTGATCCAAATTCCCTGCCAATTAGGTGCTTTGGAGAGTGGACTATTGGGGCACCAT
90182982 GAGGGCAAAGTTCTATTATGAAATAAAGCAGGCAGCATTTGAAATTAGAGGTTATGTATTGATGT
781 GAGGGCAAAGTTCTATTATGAAATAAAGCAGGCAGCATTTGAAATTAGAGGTTATGTATTGATGT
90183047 TTCAAAAGGACAAGAAAATTTCATTTGAAATTTTTTACTTTATTTCATATTGACAGCCTTTTTAT
846 TTCAAAAGGACAAGAAAATTTCATTTGAAATTTTTTACTTTATTTCATATTGACAGCCTTTTTAT
90183112 AAGCTGTTAATTACAAAGAG
911 AAGCTGTTAATTACAAAGAG
*
90183132 AAAGTCCTAATAGAATTCTTAATTTAAAGCCCTAATAGAATTCTTAATTTAAAGTTTATAAAAAA
1 AAAGCCCTAATAGAATTCTTAATTTAAAGCCCTAATAGAATTCTTAATTTAAAGTTTATAAAAAA
*
90183197 ACTAGTAAAACTAAAACTCCTAAAGAAATTAAATCAATGTAAAACTCTAATTCCTATTCCTTTTT
66 ACTAGTAAAACTAAAACTCCTAAAGAAATTAAATCAATGTAAAACTCTAATTCCTATTCCTTCTT
90183262 TGATATTGTTTTCCAATGAAAACATCTTATCAGAGTGTCAAATCTGGTGATATGGCTTTATTTTT
131 TGATATTGTTTTCCAATGAAAACATCTTATCAGAGTGTCAAATCTGGTGATATGGCTTTATTTTT
90183327 GTTTAGTTGGTATATACAATTCCAAGCCACTGAATCTCTCAAGAGAGAAAGGGTAGTTGTGAGCA
196 GTTTAGTTGGTATATACAATTCCAAGCCACTGAA--TCTCAAGAGAGAAAGGGTAGTTGTGAGCA
*
90183392 TTGATCCAAATTCCTTGCCAATTAGGTGCTTTGGAGAGTGGACTATTGGGGCACCATGAGGGCAA
259 TTGATCCAAATTCCCTGCCAATTAGGTGCTTTGGAGAGTGGACTATTGGGGCACCATGAGGGCAA
90183457 AGTTCTATTATGAAATAAAGCAGGCAGCATTTGAAATTAGAGGTTATGTATTGATGTTTCAAAAG
324 AGTTCTATTATGAAATAAAGCAGGCAGCATTTGAAATTAGAGGTTATGTATTGATGTTTCAAAAG
90183522 GACAAGAAAATTTCATTTGAAATTTTTTACTTTATTTCATATTGACAGCCCTTTTATAAGCTGTT
389 GACAAGAAAATTTCATTTGAAATTTTTTACTTTATTTCATATTGACAGCCCTTTTATAAGCTGTT
90183587 AATTACAAAGAGAAAGTCCTAATAGAATTCTTAATTTAAAGCCCTAATAGAATTCTTAATTTAAA
454 AATTACAAAGAGAAAGTCCTAATAGAATTCTTAATTTAAAGCCCTAATAGAATTCTTAATTTAAA
90183652 GTTTATAAAAAAACTAGTAAAACTAAAACTCCTAAAGAAATTAAATCAATGTAAAACTCTAATTC
519 GTTTATAAAAAAACTAGTAAAACTAAAACTCCTAAAGAAATTAAATCAATGTAAAACTCTAATTC
90183717 CTATTCCTTCTTTGATATTGTTTTCCAATGAAAACATCTTATCAGAGTGTCAAATCTGGTGATAT
584 CTATTCCTTCTTTGATATTGTTTTCCAATGAAAACATCTTATCAGAGTGTCAAATCTGGTGATAT
*
90183782 GGCTTTATTTTTGTTTAGTTGGTATATACAATTTCAAGCCACTGAATCTCAAGAGAGAAAGGGTA
649 GGCTTTATTTTTGTTTAGTTGGTATATACAATTCCAAGCCACTGAATCTCAAGAGAGAAAGGGTA
90183847 GTTGTGAGCATTGATCCAAATTCCCTGCCAATTAGGTGCTTTGGAGAGTGGACTATTGGGGCACC
714 GTTGTGAGCATTGATCCAAATTCCCTGCCAATTAGGTGCTTTGGAGAGTGGACTATTGGGGCACC
*
90183912 ATGAGGGTAAAGTTCTATTATGAAATAAAGCAGGCAGCATTTGAAATTAGAGGTTATGTATTGAT
779 ATGAGGGCAAAGTTCTATTATGAAATAAAGCAGGCAGCATTTGAAATTAGAGGTTATGTATTGAT
90183977 GTTTCAAAAGGACAAGAAAATTTCATTTGAAATTTT
844 GTTTCAAAAGGACAAGAAAATTTCATTTGAAATTTT
90184013 ATTTGGTTTC
Statistics
Matches: 871, Mismatches: 8, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
930 227 0.26
932 644 0.74
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34
Consensus pattern (930 bp):
AAAGCCCTAATAGAATTCTTAATTTAAAGCCCTAATAGAATTCTTAATTTAAAGTTTATAAAAAA
ACTAGTAAAACTAAAACTCCTAAAGAAATTAAATCAATGTAAAACTCTAATTCCTATTCCTTCTT
TGATATTGTTTTCCAATGAAAACATCTTATCAGAGTGTCAAATCTGGTGATATGGCTTTATTTTT
GTTTAGTTGGTATATACAATTCCAAGCCACTGAATCTCAAGAGAGAAAGGGTAGTTGTGAGCATT
GATCCAAATTCCCTGCCAATTAGGTGCTTTGGAGAGTGGACTATTGGGGCACCATGAGGGCAAAG
TTCTATTATGAAATAAAGCAGGCAGCATTTGAAATTAGAGGTTATGTATTGATGTTTCAAAAGGA
CAAGAAAATTTCATTTGAAATTTTTTACTTTATTTCATATTGACAGCCCTTTTATAAGCTGTTAA
TTACAAAGAGAAAGTCCTAATAGAATTCTTAATTTAAAGCCCTAATAGAATTCTTAATTTAAAGT
TTATAAAAAAACTAGTAAAACTAAAACTCCTAAAGAAATTAAATCAATGTAAAACTCTAATTCCT
ATTCCTTCTTTGATATTGTTTTCCAATGAAAACATCTTATCAGAGTGTCAAATCTGGTGATATGG
CTTTATTTTTGTTTAGTTGGTATATACAATTCCAAGCCACTGAATCTCAAGAGAGAAAGGGTAGT
TGTGAGCATTGATCCAAATTCCCTGCCAATTAGGTGCTTTGGAGAGTGGACTATTGGGGCACCAT
GAGGGCAAAGTTCTATTATGAAATAAAGCAGGCAGCATTTGAAATTAGAGGTTATGTATTGATGT
TTCAAAAGGACAAGAAAATTTCATTTGAAATTTTTTACTTTATTTCATATTGACAGCCTTTTTAT
AAGCTGTTAATTACAAAGAG
Found at i:90185152 original size:26 final size:26
Alignment explanation
Indices: 90185116--90185170 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
90185106 TCAAAGTAGC
*
90185116 TGTTAAATAAAGAACTGTAGCCAATA
1 TGTTAAATAAAGAACTGTAGCCAACA
90185142 TGTTAAATAAAGAACTGTAGCCAACA
1 TGTTAAATAAAGAACTGTAGCCAACA
90185168 TGT
1 TGT
90185171 ATACCCCTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.44, C:0.13, G:0.16, T:0.27
Consensus pattern (26 bp):
TGTTAAATAAAGAACTGTAGCCAACA
Found at i:90188910 original size:19 final size:21
Alignment explanation
Indices: 90188872--90188911 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
90188862 TCATAGCTAC
*
90188872 TCCATAAAAAAATAATATAAA
1 TCCATAAAAAAACAATATAAA
90188893 TCCA-AAAAAAACAA-ATAAA
1 TCCATAAAAAAACAATATAAA
90188912 CGAACTGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 9 0.50
21 4 0.22
ACGTcount: A:0.70, C:0.12, G:0.00, T:0.17
Consensus pattern (21 bp):
TCCATAAAAAAACAATATAAA
Found at i:90190723 original size:17 final size:16
Alignment explanation
Indices: 90190703--90190738 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
90190693 GTCTTTTTAA
*
90190703 ATTTTATTTGATTTTTT
1 ATTTTATTT-ATTTGTT
90190720 ATTTTATTTATTTGTT
1 ATTTTATTTATTTGTT
90190736 ATT
1 ATT
90190739 ATTAGGCTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.19, C:0.00, G:0.06, T:0.75
Consensus pattern (16 bp):
ATTTTATTTATTTGTT
Found at i:90191016 original size:9 final size:9
Alignment explanation
Indices: 90191002--90191044 Score: 52
Period size: 9 Copynumber: 4.8 Consensus size: 9
90190992 AATATTAAGA
90191002 AAAATTATT
1 AAAATTATT
90191011 AAAATTATAT
1 AAAATTAT-T
* *
90191021 AAACTTATA
1 AAAATTATT
90191030 AAAATTA-T
1 AAAATTATT
90191038 AAAATTA
1 AAAATTA
90191045 ACTTATAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
8 7 0.24
9 14 0.48
10 8 0.28
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (9 bp):
AAAATTATT
Found at i:90191050 original size:22 final size:22
Alignment explanation
Indices: 90191022--90191063 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
90191012 AAATTATATA
90191022 AACTTATAAAAATTATAAAATT
1 AACTTATAAAAATTATAAAATT
*
90191044 AACTTATAAATATTATAAAA
1 AACTTATAAAAATTATAAAA
90191064 AAGTTATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.36
Consensus pattern (22 bp):
AACTTATAAAAATTATAAAATT
Found at i:90195910 original size:73 final size:72
Alignment explanation
Indices: 90195760--90195897 Score: 186
Period size: 73 Copynumber: 1.9 Consensus size: 72
90195750 AAAATAATAA
* * * * *
90195760 AAAATAGAATAAAATCCATTAAACAGCGGGAATAAATCTTGAAACAGATTTTATTTACTTTTAAT
1 AAAATAGAATAAAATCCATTAAACAACGGGAATAAATCTCGAAACAAACTTTATTTACTTTCAAT
90195825 TTGAAAAT
66 TT-AAAAT
* ** *
90195833 AAAATCGAATAAAATCTGTTAAACAACGGGAATAAATCTCGAAACAAACTTTATTTAGTTTCAAT
1 AAAATAGAATAAAATCCATTAAACAACGGGAATAAATCTCGAAACAAACTTTATTTACTTTCAAT
90195898 ATTCATTGAA
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
73 56 1.00
ACGTcount: A:0.46, C:0.12, G:0.11, T:0.31
Consensus pattern (72 bp):
AAAATAGAATAAAATCCATTAAACAACGGGAATAAATCTCGAAACAAACTTTATTTACTTTCAAT
TTAAAAT
Found at i:90199898 original size:27 final size:27
Alignment explanation
Indices: 90199850--90200008 Score: 175
Period size: 27 Copynumber: 5.9 Consensus size: 27
90199840 ACGAGGCTAT
* *
90199850 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
90199877 TAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
90199903 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
90199930 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
90199957 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
90199984 CAGATAATTATGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
90200009 GACGCTTCTT
Statistics
Matches: 114, Mismatches: 10, Indels: 16
0.81 0.07 0.11
Matches are distributed among these distances:
26 9 0.08
27 100 0.88
28 5 0.04
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:90200009 original size:54 final size:54
Alignment explanation
Indices: 90199868--90200011 Score: 236
Period size: 54 Copynumber: 2.7 Consensus size: 54
90199858 GTGACGAAGT
* * *
90199868 CACCAGATATAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
90199922 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
*
90199976 CACCAGATCAGATAATTATGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
90200012 GCTTCTTCCA
Statistics
Matches: 85, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
53 4 0.05
54 81 0.95
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:90200999 original size:22 final size:22
Alignment explanation
Indices: 90200969--90201024 Score: 58
Period size: 26 Copynumber: 2.4 Consensus size: 22
90200959 TAAGCTTTAA
* *
90200969 TTACATAATTATCATGGAATAT
1 TTACCTAATTATCATGGAACAT
90200991 TTACCTAATCCATTATCATGGAACAT
1 TTACCT-A---ATTATCATGGAACAT
90201017 TTACCTAA
1 TTACCTAA
90201025 CCCATTATCA
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
22 6 0.21
23 1 0.04
25 1 0.04
26 20 0.71
ACGTcount: A:0.38, C:0.18, G:0.07, T:0.38
Consensus pattern (22 bp):
TTACCTAATTATCATGGAACAT
Found at i:90201005 original size:26 final size:26
Alignment explanation
Indices: 90200976--90201034 Score: 100
Period size: 26 Copynumber: 2.3 Consensus size: 26
90200966 TAATTACATA
* *
90200976 ATTATCATGGAATATTTACCTAATCC
1 ATTATCATGGAACATTTACCTAACCC
90201002 ATTATCATGGAACATTTACCTAACCC
1 ATTATCATGGAACATTTACCTAACCC
90201028 ATTATCA
1 ATTATCA
90201035 ATTTGTATCA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.36, C:0.22, G:0.07, T:0.36
Consensus pattern (26 bp):
ATTATCATGGAACATTTACCTAACCC
Found at i:90205301 original size:16 final size:16
Alignment explanation
Indices: 90205272--90205307 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
90205262 TTTCGCAATC
*
90205272 TTTT-AAAATTTTTGT
1 TTTTGAAAATCTTTGT
90205287 TTTTGAAAATCTTTGT
1 TTTTGAAAATCTTTGT
90205303 TTTTG
1 TTTTG
90205308 TAAACCCATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.22, C:0.03, G:0.11, T:0.64
Consensus pattern (16 bp):
TTTTGAAAATCTTTGT
Found at i:90206323 original size:27 final size:27
Alignment explanation
Indices: 90206275--90206433 Score: 166
Period size: 27 Copynumber: 5.9 Consensus size: 27
90206265 GCGAGGCTGT
* *
90206275 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
90206302 TAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
90206328 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * * *
90206355 CAGATAATTATGGCATAGCCATCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
90206382 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
90206409 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
90206434 GACGCTTCCT
Statistics
Matches: 111, Mismatches: 13, Indels: 16
0.79 0.09 0.11
Matches are distributed among these distances:
26 9 0.08
27 97 0.87
28 5 0.05
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:90206435 original size:54 final size:54
Alignment explanation
Indices: 90206293--90206436 Score: 227
Period size: 54 Copynumber: 2.7 Consensus size: 54
90206283 GTGACGAAGT
* * *
90206293 CACCAGATATAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
* *
90206347 CACCAGATCAGATAATTATGGCATAGCCATCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
90206401 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
90206437 GCTTCCTCCA
Statistics
Matches: 82, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
53 4 0.05
54 78 0.95
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:90207424 original size:22 final size:22
Alignment explanation
Indices: 90207394--90207449 Score: 58
Period size: 26 Copynumber: 2.4 Consensus size: 22
90207384 TAAGCTTTAA
* *
90207394 TTACATAATTATCATGGAATAT
1 TTACCTAATTATCATGGAACAT
90207416 TTACCTAATTCATTATCATGGAACAT
1 TTACCT-A---ATTATCATGGAACAT
90207442 TTACCTAA
1 TTACCTAA
90207450 CCCATTATCA
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
22 6 0.21
23 1 0.04
25 1 0.04
26 20 0.71
ACGTcount: A:0.38, C:0.16, G:0.07, T:0.39
Consensus pattern (22 bp):
TTACCTAATTATCATGGAACAT
Found at i:90207430 original size:26 final size:26
Alignment explanation
Indices: 90207401--90207459 Score: 91
Period size: 26 Copynumber: 2.3 Consensus size: 26
90207391 TAATTACATA
* **
90207401 ATTATCATGGAATATTTACCTAATTC
1 ATTATCATGGAACATTTACCTAACCC
90207427 ATTATCATGGAACATTTACCTAACCC
1 ATTATCATGGAACATTTACCTAACCC
90207453 ATTATCA
1 ATTATCA
90207460 ATTTGTATCA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.20, G:0.07, T:0.37
Consensus pattern (26 bp):
ATTATCATGGAACATTTACCTAACCC
Found at i:90213820 original size:6 final size:6
Alignment explanation
Indices: 90213809--90213843 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
90213799 AGAGAGAAGA
90213809 GAAGGG GAAGGG GAAGGG GAAGGG GAAGGG GAAGG
1 GAAGGG GAAGGG GAAGGG GAAGGG GAAGGG GAAGG
90213844 AAAAAAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.66, T:0.00
Consensus pattern (6 bp):
GAAGGG
Found at i:90215509 original size:14 final size:14
Alignment explanation
Indices: 90215490--90215523 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
90215480 ATATTTTTTT
90215490 TTCTAATAATACTA
1 TTCTAATAATACTA
* *
90215504 TTCTAATGATACTT
1 TTCTAATAATACTA
90215518 TTCTAA
1 TTCTAA
90215524 CAAGAAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.35, C:0.15, G:0.03, T:0.47
Consensus pattern (14 bp):
TTCTAATAATACTA
Found at i:90216415 original size:33 final size:33
Alignment explanation
Indices: 90216351--90216415 Score: 85
Period size: 33 Copynumber: 2.0 Consensus size: 33
90216341 CTCCTTTCAG
* * *
90216351 CTCGTATCCACCGCATTACTCCAGTCTTCCCGA
1 CTCGTATCCACCGCAGTACTCCACTCCTCCCGA
* *
90216384 CTCGTATCCACTGCAGTACTCTACTCCTCCCG
1 CTCGTATCCACCGCAGTACTCCACTCCTCCCG
90216416 GCTTAAGTTC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.17, C:0.43, G:0.12, T:0.28
Consensus pattern (33 bp):
CTCGTATCCACCGCAGTACTCCACTCCTCCCGA
Found at i:90216829 original size:48 final size:48
Alignment explanation
Indices: 90216674--90216831 Score: 212
Period size: 48 Copynumber: 3.3 Consensus size: 48
90216664 GTATTTATTT
* * **
90216674 AATTAGATTA-ATTGCAACATTCAAACTTGGAACAAACTTTGTAATATA
1 AATTAGA-TACATTACAACATTAAAACGAGGAACAAACTTTGTAATATA
* * *
90216722 AATTAGATAAATTACAACATTAAAATGAAGAACAAACTTTGTAATATA
1 AATTAGATACATTACAACATTAAAACGAGGAACAAACTTTGTAATATA
*
90216770 AATTAGATACATTACAACATTAAAACGAGGAAAAAACTTTGTAATATA
1 AATTAGATACATTACAACATTAAAACGAGGAACAAACTTTGTAATATA
90216818 AATTACG-TACATTA
1 AATTA-GATACATTA
90216832 GCTCAATTCC
Statistics
Matches: 98, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
47 2 0.02
48 95 0.97
49 1 0.01
ACGTcount: A:0.49, C:0.11, G:0.09, T:0.30
Consensus pattern (48 bp):
AATTAGATACATTACAACATTAAAACGAGGAACAAACTTTGTAATATA
Done.