Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 27 of 349
Found at i:7480374 original size:15 final size:15
Alignment explanation
Indices: 7480354--7480383 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
7480344 CATTTGATGG
7480354 TTTTTTTTTT-CTTT
1 TTTTTTTTTTGCTTT
7480368 TTTTTTTTTTGCTTT
1 TTTTTTTTTTGCTTT
7480383 T
1 T
7480384 ATGTGGTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.00, C:0.07, G:0.03, T:0.90
Consensus pattern (15 bp):
TTTTTTTTTTGCTTT
Found at i:7485634 original size:129 final size:128
Alignment explanation
Indices: 7485456--7485770 Score: 352
Period size: 130 Copynumber: 2.4 Consensus size: 128
7485446 GTCGTTCGGT
* * * * *
7485456 CAAACGATAAATCG-AAACCCAGCACG-TAGGGCACAATTTCTCGAAATTTCCAAACACGAAATA
1 CAAACGAGAAATTGCAAA-CCAGCACGATAGGGCACGATTCCTCG-AATTTCCAAACACG-AACA
* *
7485519 TTACCTT-ATTTT-AGAATTTAGAAAAAAACATGAGTGAAATTCTAAAGGAATATTCAATTA-TT
63 TTACCTTCATTTTAAGAATTT---AAAAAACATGAGTGAAATTCCAAAGAAATATTCAATTATTT
7485581 TGAA
125 TGAA
* * * *
7485585 CAAACGGGAAATTGCAAACCAGCACGATAGGGCACGATTCCCCGAATTTCCAAACTTCGAACGTT
1 CAAACGAGAAATTGCAAACCAGCACGATAGGGCACGATTCCTCGAATTTCCAAAC-ACGAACATT
* * ** *
7485650 GCCTTCGTTTTAAAGAATTTTTAAAACATGAGTGAAATTCCAAAGAAATATTCGATTATTTTGAA
65 ACCTTCATTTT-AAGAATTTAAAAAACATGAGTGAAATTCCAAAGAAATATTCAATTATTTTGAA
* * *
7485715 CAAACGAGAAATTGCAACCCAGCACAATAGGGCACGATTCCTCGAATTTCTAAACA
1 CAAACGAGAAATTGCAAACCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACA
7485771 TTAAACATCG
Statistics
Matches: 157, Mismatches: 22, Indels: 14
0.81 0.11 0.07
Matches are distributed among these distances:
129 71 0.45
130 79 0.50
132 7 0.04
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (128 bp):
CAAACGAGAAATTGCAAACCAGCACGATAGGGCACGATTCCTCGAATTTCCAAACACGAACATTA
CCTTCATTTTAAGAATTTAAAAAACATGAGTGAAATTCCAAAGAAATATTCAATTATTTTGAA
Found at i:7485790 original size:130 final size:129
Alignment explanation
Indices: 7485543--7485792 Score: 358
Period size: 130 Copynumber: 1.9 Consensus size: 129
7485533 AATTTAGAAA
* * *
7485543 AAAACATGAGTGAAATTCTAAAGGAATATTCAATTATTTGAACAAACGGGAAATTGCAAACCAGC
1 AAAACATGAGTGAAATTCCAAAGAAATATTCAATTATTTGAACAAACGAGAAATTGCAAACCAGC
* * * *
7485608 ACGATAGGGCACGATTCCCCGAATTTCCAAACTTCGAACGTTGCCTTCGTTTTAAAGAATTTTT
66 ACAATAGGGCACGATTCCCCGAATTTCCAAACTTCAAACATCGCCTTCGTTTTAAAGAATTTTT
* *
7485672 AAAACATGAGTGAAATTCCAAAGAAATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAG
1 AAAACATGAGTGAAATTCCAAAGAAATATTCAATTA-TTTGAACAAACGAGAAATTGCAAACCAG
* * * *
7485737 CACAATAGGGCACGATTCCTCGAATTTCTAAACATT-AAACATCGCTTTTGTTTTAA
65 CACAATAGGGCACGATTCCCCGAATTTCCAAAC-TTCAAACATCGCCTTCGTTTTAA
7485793 GGTTTAGAAA
Statistics
Matches: 106, Mismatches: 13, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
129 33 0.31
130 71 0.67
131 2 0.02
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (129 bp):
AAAACATGAGTGAAATTCCAAAGAAATATTCAATTATTTGAACAAACGAGAAATTGCAAACCAGC
ACAATAGGGCACGATTCCCCGAATTTCCAAACTTCAAACATCGCCTTCGTTTTAAAGAATTTTT
Found at i:7492481 original size:47 final size:47
Alignment explanation
Indices: 7492363--7492534 Score: 237
Period size: 47 Copynumber: 3.7 Consensus size: 47
7492353 GGATGGTTGA
* * *
7492363 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAG
7492411 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
*
7492456 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTAGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
7492503 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
7492535 ACTTATGGAT
Statistics
Matches: 114, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 29 0.25
47 74 0.65
48 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:7495845 original size:19 final size:18
Alignment explanation
Indices: 7495810--7495857 Score: 69
Period size: 18 Copynumber: 2.6 Consensus size: 18
7495800 AATTCACATC
*
7495810 TCATTTCATCATTTCATATT
1 TCATTTC-TCATCTCATA-T
7495830 TCATTTCTCATCTCATAT
1 TCATTTCTCATCTCATAT
7495848 TCATTTCTCA
1 TCATTTCTCA
7495858 ACTTTGTCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
18 11 0.41
19 9 0.33
20 7 0.26
ACGTcount: A:0.23, C:0.25, G:0.00, T:0.52
Consensus pattern (18 bp):
TCATTTCTCATCTCATAT
Found at i:7498653 original size:27 final size:27
Alignment explanation
Indices: 7498612--7498667 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
7498602 AAAATATTAA
*
7498612 ATTAAATCTTGTTAAGTCTGGTTTCTT
1 ATTAAATCTTGTTAAGTCTAGTTTCTT
*
7498639 ATTAAATCTTTTTAAGTCTAGTTTCTT
1 ATTAAATCTTGTTAAGTCTAGTTTCTT
7498666 AT
1 AT
7498668 AAAAGAAACC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.25, C:0.11, G:0.11, T:0.54
Consensus pattern (27 bp):
ATTAAATCTTGTTAAGTCTAGTTTCTT
Found at i:7501850 original size:20 final size:21
Alignment explanation
Indices: 7501806--7501851 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
7501796 AGATTTCAAG
* *
7501806 ATATACTCGTACAAGACTTTT
1 ATATTCTCGTACAAGAATTTT
7501827 -TATTCTCGTACAA-AATTTT
1 ATATTCTCGTACAAGAATTTT
7501846 ATATTC
1 ATATTC
7501852 GGGTCATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.33, C:0.17, G:0.07, T:0.43
Consensus pattern (21 bp):
ATATTCTCGTACAAGAATTTT
Found at i:7502930 original size:31 final size:31
Alignment explanation
Indices: 7502887--7502958 Score: 130
Period size: 31 Copynumber: 2.4 Consensus size: 31
7502877 AAATAATGAA
7502887 AATATA-AC-TAGTAATGTTAAGATATATAT
1 AATATATACATAGTAATGTTAAGATATATAT
7502916 AATATATACATAGTAATGTTAAGATATATAT
1 AATATATACATAGTAATGTTAAGATATATAT
7502947 AATATATACATA
1 AATATATACATA
7502959 TGTATGAAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
29 6 0.15
30 2 0.05
31 33 0.80
ACGTcount: A:0.50, C:0.04, G:0.08, T:0.38
Consensus pattern (31 bp):
AATATATACATAGTAATGTTAAGATATATAT
Found at i:7502996 original size:22 final size:22
Alignment explanation
Indices: 7502971--7503045 Score: 69
Period size: 22 Copynumber: 3.3 Consensus size: 22
7502961 TATGAAATAG
*
7502971 ATATAAAAAAAATATGTACATA
1 ATATAAAAAAAATATATACATA
* *
7502993 ATATAGTGTAAAAAATACATACATA
1 ATATA---AAAAAAATATATACATA
**
7503018 ATATAATTAAAATATATACATA
1 ATATAAAAAAAATATATACATA
*
7503040 AGATAA
1 ATATAA
7503046 CATGTAGAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
22 23 0.55
25 19 0.45
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.29
Consensus pattern (22 bp):
ATATAAAAAAAATATATACATA
Found at i:7503015 original size:25 final size:24
Alignment explanation
Indices: 7502977--7503039 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
7502967 ATAGATATAA
** *
7502977 AAAAAATATGTACATAATATAGTGT
1 AAAAAATACATACATAATATAAT-T
7503002 AAAAAATACATACATAATATAATT
1 AAAAAATACATACATAATATAATT
7503026 AAAATATATACATA
1 AAAA-A-ATACATA
7503040 AGATAACATG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
24 5 0.15
25 21 0.64
26 7 0.21
ACGTcount: A:0.59, C:0.06, G:0.05, T:0.30
Consensus pattern (24 bp):
AAAAAATACATACATAATATAATT
Found at i:7503091 original size:25 final size:24
Alignment explanation
Indices: 7503061--7503189 Score: 99
Period size: 23 Copynumber: 5.5 Consensus size: 24
7503051 AGAAAAAAAA
*
7503061 AATATAAATAATATAGTATTAAAG
1 AATATACATAATATAGTATTAAAG
*
7503085 ATATATACATAAAATAGTA-TAATA-
1 A-ATATACATAATATAGTATTAA-AG
* * * *
7503109 TATATACGTAATATAGAATT-TAG
1 AATATACATAATATAGTATTAAAG
* *
7503132 AATATACCTAATATA-T-TAAAAG
1 AATATACATAATATAGTATTAAAG
* * *
7503154 AATATATATAATATAATATTAAAA
1 AATATACATAATATAGTATTAAAG
7503178 AATATA-ATAATA
1 AATATACATAATA
7503190 ACAAAAAAAA
Statistics
Matches: 82, Mismatches: 16, Indels: 15
0.73 0.14 0.13
Matches are distributed among these distances:
21 1 0.01
22 16 0.20
23 34 0.41
24 15 0.18
25 16 0.20
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.35
Consensus pattern (24 bp):
AATATACATAATATAGTATTAAAG
Found at i:7504768 original size:14 final size:14
Alignment explanation
Indices: 7504750--7504781 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
7504740 TGATTTTTTG
7504750 GAAAAACA-AATTT
1 GAAAAACAGAATTT
7504763 GAAAAACAGAATTT
1 GAAAAACAGAATTT
7504777 GAAAA
1 GAAAA
7504782 TACCTCAGCG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.62, C:0.06, G:0.12, T:0.19
Consensus pattern (14 bp):
GAAAAACAGAATTT
Found at i:7504826 original size:90 final size:90
Alignment explanation
Indices: 7504370--7504945 Score: 497
Period size: 86 Copynumber: 6.5 Consensus size: 90
7504360 TTAACTCATT
* * * *
7504370 TCTCGCAATATGAATTGACTCTTT--AAAAC-TAGACATT-AAAAACAGAAATTGAAAATAGCTC
1 TCTCGCAATATGAGTTGATTTTTTGAAAAACATA-A-ATTGAAAAACAGAAATTGAAAATACCTC
** * *
7504431 AGCACGTGAGC-CAAGGCTCAACTCACT
64 AGCGTGTGA-CTCGAGGCTCAACTCACC
* ** *
7504458 TCTCGCAATATGAGTTGA-TTTTT--AAAACA-AAATTTGTAAAA-AGATTTTGAAAATACCTCG
1 TCTCGCAATATGAGTTGATTTTTTGAAAAACATAAA-TTGAAAAACAGAAATTGAAAATACCTCA
** *
7504518 GTATGTGACCCGAGGCTCAACTCACC
65 GCGTGTGACTCGAGGCTCAACTCACC
* * * * * *
7504544 TCTCGTAATATGAGTTGA-TTTTTGCAAAGCATAAATTAAAAAAAAAAATCAATTGAAAATACCT
1 TCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATT-GAAAAACAGA--AATTGAAAATACCT
*
7504608 CGGCGTGTGA-TCTGAGGCTCAACTCACC
63 CAGCGTGTGACTC-GAGGCTCAACTCACC
* * *
7504636 TCTCGCAATATGAGTTGATTTTTTGACAAACATAAATTGAAAAAAAAGAAATTGAAAATATCTCA
1 TCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATTG-AAAAACAGAAATTGAAAATACCTCA
* *
7504701 GCGTGT-CCT-GAGGCTGAACTCACC
65 GCGTGTGACTCGAGGCTCAACTCACC
* *
7504725 TCTCGCAATATGAGTTGATTTTTTGGAAAAACA-AATTTGAAAAACAGAATTTGAAAATACCTCA
1 TCTCGCAATATGAGTTGATTTTTT-GAAAAACATAAATTGAAAAACAGAAATTGAAAATACCTCA
* *
7504789 GCGTGTGAGTCAAGGCTCAACTCACC
65 GCGTGTGACTCGAGGCTCAACTCACC
* * * * * * * *
7504815 ACTCGCAATATGAGCTGATTTTTTTAAACACAGAAATTGAAGAACAGAAATGGAAAACACCTCAG
1 TCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATTGAAAAACAGAAATTGAAAATACCTCAG
* * *
7504880 C--GT--CTTGAGGTTTAACTCACC
66 CGTGTGACTCGAGGCTCAACTCACC
* * * *
7504901 TCTCGCAATATGAGCTAATTTTTTTTGAAAGACAGAAATTGAAAA
1 TCTCGCAATATGAGTTGA--TTTTTTGAAAAACATAAATTGAAAA
7504946 TACCTCAACG
Statistics
Matches: 408, Mismatches: 59, Indels: 42
0.80 0.12 0.08
Matches are distributed among these distances:
85 2 0.00
86 89 0.22
87 14 0.03
88 76 0.19
89 57 0.14
90 72 0.18
91 22 0.05
92 52 0.13
93 24 0.06
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (90 bp):
TCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATTGAAAAACAGAAATTGAAAATACCTCAG
CGTGTGACTCGAGGCTCAACTCACC
Found at i:7504827 original size:271 final size:265
Alignment explanation
Indices: 7504340--7504837 Score: 621
Period size: 271 Copynumber: 1.9 Consensus size: 265
7504330 TTATTCTTTA
* **
7504340 CTCGGCATGTGATCCTGAGCTTAACTCATTTCTCGCAATATGAATTGACTCTTTAAAACTAGACA
1 CTCGGCATGTGATCCTGAGCTCAACTCACCTCTCGCAATATGAATTGACTCTTTAAAACTAGACA
* *
7504405 TTAAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATG
66 TTAAAAAAAGAAATTGAAAATAGCTCAG-ACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATG
* * * * *
7504470 AGTTGATTTTTAAAACAAAATTTGTAAAAAGATTTTGAAAATACCTCGGTATGTGACCCGAGGCT
130 AGTTGATTTTTAAAACAAAATTTGAAAAAAGAATTTGAAAATACCTCAGCATGTGACCCAAGGCT
* * *
7504535 CAACTCACCTCTCGTAATATGAGTTGATTTTTGCAAAGCATAAATTAAAAAAAAAAATCAATTGA
195 CAACTCACCACTCGCAATATGAGCTGATTTTTGCAAAGCATAAATTAAAAAAAAAAATCAATTGA
7504600 AAATAC
260 AAATAC
* * * *
7504606 CTCGGCGTGTGAT-CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGACAAACATA
1 CTCGGCATGTGATCCTGA-GCTCAACTCACCTCTCGCAATATGAATTGACTCTTT-A-AAAC-TA
* * * *
7504670 -A-ATTGAAAAAAAAGAAATTGAAAATATCTCAG-CGTG-TCCTGAGGCTGAACTCACCTCTCGC
62 GACATT--AAAAAAAGAAATTGAAAATAGCTCAGACGTGAGCC-AAGGCTCAACTCACCTCTCGC
*
7504731 AATATGAGTTGATTTTTTGGAAAA-ACAAATTTGAAAAACAGAATTTGAAAATACCTCAGCGTGT
124 AATATGAGTTGA-TTTTT--AAAACA-AAATTTGAAAAA-AGAATTTGAAAATACCTCAGCATGT
**
7504795 GAGTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTT
184 GACCCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTT
7504838 TTAAACACAG
Statistics
Matches: 196, Mismatches: 24, Indels: 19
0.82 0.10 0.08
Matches are distributed among these distances:
265 4 0.02
266 44 0.22
267 38 0.19
268 10 0.05
269 27 0.14
270 15 0.08
271 58 0.30
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.29
Consensus pattern (265 bp):
CTCGGCATGTGATCCTGAGCTCAACTCACCTCTCGCAATATGAATTGACTCTTTAAAACTAGACA
TTAAAAAAAGAAATTGAAAATAGCTCAGACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTAAAACAAAATTTGAAAAAAGAATTTGAAAATACCTCAGCATGTGACCCAAGGCTC
AACTCACCACTCGCAATATGAGCTGATTTTTGCAAAGCATAAATTAAAAAAAAAAATCAATTGAA
AATAC
Found at i:7505402 original size:70 final size:71
Alignment explanation
Indices: 7504851--7505484 Score: 863
Period size: 70 Copynumber: 9.0 Consensus size: 71
7504841 AACACAGAAA
* * * * *
7504851 TTGAAGAACAGAAATGGAAAACACCTCAGCGTCT-TGAGGTTTAACTCACCTCTCGCAATATGAG
1 TTGAA-AACAGAAATTGAAAATACCTCAGCGTGTCTGAGGCTCAACTCACCTCTCGCAATATGAG
**
7504915 CTAATTTTTT
65 -T--TGATTT
*
7504925 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAGCGTGTC-TGAGGCTCAACTCACCTCTCGCAATATGA
7504990 GTTGATTT
64 GTTGATTT
* * * *
7504998 TTGACAAACAAAAATTGAAATTACCTCAGCGTCT-TGAGGTTCAACTCACCTCTCGCAATATGAG
1 TTGA-AAACAGAAATTGAAAATACCTCAGCGTGTCTGAGGCTCAACTCACCTCTCGCAATATGAG
7505062 TTGATTTT
65 TTGA-TTT
* *
7505070 TTGAAAACAGAAATTGAAAATACCTCA-AGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGTC-TGAGGCTCAACTCACCTCTCGCAATATGAG
7505134 TTGATTT
65 TTGATTT
7505141 TTGAAAACA-AAATTGAAAATACCTCA-CGTGTCTTGAGGCTCAACTCA-C-CTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGTC-TGAGGCTCAACTCACCTCTCGCAATATGAG
7505202 TTGATTT
65 TTGATTT
*
7505209 TTGAAAA-AAAAATTG-AAATACCTCAGCGTGTCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGTCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
7505272 TGAGTT
66 TGATTT
*
7505278 TTGAAAACA-AAATTGAAAATACCTCAGCGT-TCTGAGGCTCAACTCACCTATCGCAATATGAGT
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGTCTGAGGCTCAACTCACCTCTCGCAATATGAGT
7505341 TGATTT
66 TGATTT
*
7505347 TTGAAAACAGAAATTG-AAATACCTCAACGTGTCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGTCTGAGGCTCAACTCACCTCTCGCAATATGAGT
7505411 TGA-TT
66 TGATTT
* *
7505416 TTGACAAA-AAAAATTGAAATTACCTCAGCGTGTCTGA-GCTCAACTCA-CTCT--CAATATGAG
1 TTGA-AAACAGAAATTGAAAATACCTCAGCGTGTCTGAGGCTCAACTCACCTCTCGCAATATGAG
7505476 TTGATTT
65 TTGATTT
7505483 TT
1 TT
7505485 TTAGAAACAT
Statistics
Matches: 515, Mismatches: 27, Indels: 43
0.88 0.05 0.07
Matches are distributed among these distances:
66 13 0.03
67 29 0.06
68 44 0.09
69 115 0.22
70 116 0.23
71 66 0.13
72 41 0.08
73 32 0.06
74 30 0.06
75 1 0.00
76 28 0.05
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (71 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGTCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTT
Found at i:7505411 original size:139 final size:141
Alignment explanation
Indices: 7504851--7505484 Score: 886
Period size: 139 Copynumber: 4.5 Consensus size: 141
7504841 AACACAGAAA
* * * *
7504851 TTGAAGAACAGAAATGGAAAACACCTCAGCG-TCTTGAGGTTTAACTCACCTCTCGCAATATGAG
1 TTGAA-AACA-AAATTGAAAATACCTCAGCGTTCTTGAGGCTCAACTCACCT-TCGCAATATGAG
**
7504915 CTAATTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
63 -T--TGATTTTTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
7504980 CGCAATATGAGTTGATTT
124 CGCAATATGAGTTGATTT
* *
7504998 TTGACAAACAAAAATTGAAATTACCTCAGCG-TCTTGAGGTTCAACTCACCTCTCGCAATATGAG
1 TTGA-AAAC-AAAATTGAAAATACCTCAGCGTTCTTGAGGCTCAACTCACCT-TCGCAATATGAG
*
7505062 TTGATTTTTTGAAAACAGAAATTGAAAATACCTCAA-GTGTCTTGAGGTTCAACTCACCTCTCGC
63 TTGA-TTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGC
7505126 AATATGAGTTGATTT
127 AATATGAGTTGATTT
7505141 TTGAAAACAAAATTGAAAATACCTCA-CGTGTCTTGAGGCTCAACTCACC-TCGCAATATGAGTT
1 TTGAAAACAAAATTGAAAATACCTCAGCGT-TCTTGAGGCTCAACTCACCTTCGCAATATGAGTT
* *
7505204 GATTTTTGAAAA-AAAAATTG-AAATACCTCAGCGTGTC-TGAGGCTCAACTCACCTCTCGCAAT
65 GATTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
*
7505266 ATGAGTTGAGTT
130 ATGAGTTGATTT
7505278 TTGAAAACAAAATTGAAAATACCTCAGCGTTC-TGAGGCTCAACTCACCTATCGCAATATGAGTT
1 TTGAAAACAAAATTGAAAATACCTCAGCGTTCTTGAGGCTCAACTCACCT-TCGCAATATGAGTT
7505342 GATTTTTGAAAACAGAAATTG-AAATACCTCAACGTGTC-TGAGGCTCAACTCACCTCTCGCAAT
65 GATTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
7505405 ATGAGTTGA-TT
130 ATGAGTTGATTT
* * *
7505416 TTGACAAAAAAAATTGAAATTACCTCAGCGTGTC-TGA-GCTCAACTCA-C-TCTCAATATGAGT
1 TTGA-AAACAAAATTGAAAATACCTCAGCGT-TCTTGAGGCTCAACTCACCTTCGCAATATGAGT
7505477 TGATTTTT
64 TGATTTTT
7505485 TTAGAAACAT
Statistics
Matches: 457, Mismatches: 18, Indels: 35
0.90 0.04 0.07
Matches are distributed among these distances:
136 36 0.08
137 73 0.16
138 48 0.11
139 101 0.22
140 23 0.05
141 17 0.04
142 22 0.05
143 46 0.10
144 23 0.05
145 9 0.02
146 1 0.00
147 56 0.12
148 2 0.00
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (141 bp):
TTGAAAACAAAATTGAAAATACCTCAGCGTTCTTGAGGCTCAACTCACCTTCGCAATATGAGTTG
ATTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTT
Found at i:7505696 original size:13 final size:12
Alignment explanation
Indices: 7505674--7505717 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 12
7505664 TTGATTTTTG
7505674 AAAAACAGAAATT
1 AAAAA-AGAAATT
*
7505687 AAAAGTAGAAATT
1 AAAA-AAGAAATT
7505700 GAAAAAAGAAATT
1 -AAAAAAGAAATT
7505713 AAAAA
1 AAAAA
7505718 TACCTCGCGT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
12 5 0.19
13 18 0.67
14 4 0.15
ACGTcount: A:0.70, C:0.02, G:0.11, T:0.16
Consensus pattern (12 bp):
AAAAAAGAAATT
Found at i:7505762 original size:98 final size:100
Alignment explanation
Indices: 7505501--7505860 Score: 428
Period size: 99 Copynumber: 3.7 Consensus size: 100
7505491 ACATAAATAA
* * *
7505501 AAAAAACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTTAACTCACTTCTCGCAATATGAGT
1 AAAAAA-G-AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
7505566 TGA--TTTGAAAAGCAGAATTTGTAAGGCAAAAATTG
64 TGATTTTTGAAAAGCAGAAATTGAAAAGCAAAAATTG
7505601 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAA-AGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
7505666 GATTTTTGAAAAACAGAAATT-AAAAGTAGAAATTG
65 GATTTTTGAAAAGCAGAAATTGAAAAGCAAAAATTG
* *
7505701 AAAAAAGAAATTAAAAATACCTC-GCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAAAAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* *
7505765 ATTTTTGAAAAGCATAAATTG---A--AAAAA-CG
66 ATTTTTGAAAAGCAGAAATTGAAAAGCAAAAATTG
* *
7505794 ------GAAATTGAAAATACCTCAGCGTGTGACCTGAGGCCCAACTCACCTCTCGCAATATGAGT
1 AAAAAAGAAATTGAAAATACCTCAGC--GTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
7505853 TGATTTTT
64 TGATTTTT
7505861 TTGAAAGATA
Statistics
Matches: 234, Mismatches: 19, Indels: 24
0.84 0.07 0.09
Matches are distributed among these distances:
87 16 0.07
88 2 0.01
90 42 0.18
93 1 0.00
94 4 0.02
96 1 0.00
98 58 0.25
99 73 0.31
100 21 0.09
101 16 0.07
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (100 bp):
AAAAAAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTGAAAAGCAGAAATTGAAAAGCAAAAATTG
Found at i:7505840 original size:90 final size:85
Alignment explanation
Indices: 7505695--7505860 Score: 251
Period size: 90 Copynumber: 1.9 Consensus size: 85
7505685 TTAAAAGTAG
* *
7505695 AAATTGAAAAAAGAAATTAAAAATACCTCGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATG
1 AAATTGAAAAAAGAAATTAAAAATACCTCGCGTGACCCGAGGCCCAACTCACCTCTCGCAATATG
7505760 AGTTGATTTTTGAAAAGCAT
66 AGTTGATTTTTGAAAAGCAT
* *
7505780 AAATTGAAAAAACGGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCCCAACTCACCTCTCGCA
1 AAATTGAAAAAA--GAAATTAAAAATACCTC-GC--GTGACCCGAGGCCCAACTCACCTCTCGCA
7505845 ATATGAGTTGATTTTT
61 ATATGAGTTGATTTTT
7505861 TTGAAAGATA
Statistics
Matches: 72, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
85 12 0.17
87 16 0.22
88 2 0.03
90 42 0.58
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.25
Consensus pattern (85 bp):
AAATTGAAAAAAGAAATTAAAAATACCTCGCGTGACCCGAGGCCCAACTCACCTCTCGCAATATG
AGTTGATTTTTGAAAAGCAT
Found at i:7517857 original size:18 final size:19
Alignment explanation
Indices: 7517834--7517885 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 19
7517824 AGTATGTACG
7517834 TAAATATATATATAT-TTA
1 TAAATATATATATATGTTA
7517852 TAAATAGTA-ATAT-TGTTA
1 TAAATA-TATATATATGTTA
*
7517870 GAAATATACTATATAT
1 TAAATATA-TATATAT
7517886 AGTGTTTGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
17 3 0.11
18 18 0.64
19 6 0.21
20 1 0.04
ACGTcount: A:0.48, C:0.02, G:0.06, T:0.44
Consensus pattern (19 bp):
TAAATATATATATATGTTA
Found at i:7517995 original size:22 final size:22
Alignment explanation
Indices: 7517970--7518044 Score: 69
Period size: 22 Copynumber: 3.3 Consensus size: 22
7517960 TATGAAATAG
*
7517970 ATATAAAAAAAATATGTACATA
1 ATATAAAAAAAATATATACATA
* *
7517992 ATATAGTGTAAAAAATACATACATA
1 ATATA---AAAAAAATATATACATA
**
7518017 ATATAATTAAAATATATACATA
1 ATATAAAAAAAATATATACATA
*
7518039 AGATAA
1 ATATAA
7518045 CATGTAGAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
22 23 0.55
25 19 0.45
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.29
Consensus pattern (22 bp):
ATATAAAAAAAATATATACATA
Found at i:7518014 original size:25 final size:24
Alignment explanation
Indices: 7517976--7518038 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
7517966 ATAGATATAA
** *
7517976 AAAAAATATGTACATAATATAGTGT
1 AAAAAATACATACATAATATAAT-T
7518001 AAAAAATACATACATAATATAATT
1 AAAAAATACATACATAATATAATT
7518025 AAAATATATACATA
1 AAAA-A-ATACATA
7518039 AGATAACATG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
24 5 0.15
25 21 0.64
26 7 0.21
ACGTcount: A:0.59, C:0.06, G:0.05, T:0.30
Consensus pattern (24 bp):
AAAAAATACATACATAATATAATT
Found at i:7518161 original size:22 final size:20
Alignment explanation
Indices: 7518136--7518185 Score: 55
Period size: 25 Copynumber: 2.2 Consensus size: 20
7518126 TAGAATAACC
7518136 TAATATATTAAAAGAATATATA
1 TAATATATTAAAA-AATATA-A
7518158 TAATATAATATTAAAAAATATAA
1 T-A-AT-ATATTAAAAAATATAA
7518181 TAATA
1 TAATA
7518186 ACAAAAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
20 1 0.04
21 2 0.08
22 2 0.08
23 3 0.12
24 8 0.32
25 9 0.36
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (20 bp):
TAATATATTAAAAAATATAA
Found at i:7518495 original size:16 final size:16
Alignment explanation
Indices: 7518457--7518495 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
7518447 TCCAAAAAAA
*
7518457 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
7518473 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
7518489 AATAACT
1 AAAAACT
7518496 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:7518740 original size:30 final size:30
Alignment explanation
Indices: 7518663--7518747 Score: 134
Period size: 30 Copynumber: 2.8 Consensus size: 30
7518653 GTGGTGGTGG
* * *
7518663 AGTGTGGCTAGTGGAGTAGGTAGTGGAGTA
1 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
7518693 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
1 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
*
7518723 AGTGGGGCTAGTGGAGTTGGTGGTG
1 AGTGTGGCTAGTGGAGTTGGTGGTG
7518748 ACAAAGGTTA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.18, C:0.05, G:0.51, T:0.27
Consensus pattern (30 bp):
AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
Found at i:7523793 original size:24 final size:25
Alignment explanation
Indices: 7523766--7523822 Score: 75
Period size: 24 Copynumber: 2.4 Consensus size: 25
7523756 GAAGGATGAC
*
7523766 AAGGCTGAGACAAA-A-AAGGAAGTG
1 AAGGCTGAGA-AAAGAGAAGGAAGCG
7523790 AAGGCTGA-AAAAGAGAAGGAAGCG
1 AAGGCTGAGAAAAGAGAAGGAAGCG
7523814 AAGGCTGAG
1 AAGGCTGAG
7523823 TGAAAATGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
22 3 0.10
23 2 0.07
24 24 0.83
ACGTcount: A:0.47, C:0.09, G:0.37, T:0.07
Consensus pattern (25 bp):
AAGGCTGAGAAAAGAGAAGGAAGCG
Found at i:7529383 original size:16 final size:15
Alignment explanation
Indices: 7529357--7529388 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
7529347 ATTAATTGAT
7529357 TAATATAAAATAATA
1 TAATATAAAATAATA
7529372 TAATACTAAAATAATA
1 TAATA-TAAAATAATA
7529388 T
1 T
7529389 TATTTATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.34
Consensus pattern (15 bp):
TAATATAAAATAATA
Found at i:7531114 original size:36 final size:35
Alignment explanation
Indices: 7531037--7531125 Score: 99
Period size: 36 Copynumber: 2.5 Consensus size: 35
7531027 CGTTTATTTA
* * *
7531037 ATGTTCACGAACATGTTCATTTAACTTAATTGAAT
1 ATGTTCACGAATATGTTCATTGAACTTAATTAAAT
* *
7531072 ACGTTCACGAATATGTTCA-TGACCATATAATTAAAT
1 ATGTTCACGAATATGTTCATTGAAC-T-TAATTAAAT
7531108 ATGTTCACGAATAATGTT
1 ATGTTCACGAAT-ATGTT
7531126 AATAAATAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
34 3 0.07
35 18 0.40
36 19 0.42
37 5 0.11
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (35 bp):
ATGTTCACGAATATGTTCATTGAACTTAATTAAAT
Found at i:7549165 original size:131 final size:131
Alignment explanation
Indices: 7548929--7549319 Score: 658
Period size: 131 Copynumber: 3.0 Consensus size: 131
7548919 TAATTATTCA
* * * *
7548929 TTTAAAAATTCTTTAAAACGAAGGCAATACTCAATGTTTGGCAATTC-GGGAATCGTGCCCTATC
1 TTTAAAAACTCTTCAAAACGAAGGTAATACTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
*
7548993 GTGCTGGGTTGCGATTTCCCGTTTGTTCAAAATAATCGAATATTCCTTTGGAATTTCACTCATGT
66 GTGCTGGGTTGCGATTTCCTGTTTGTTCAAAATAATCGAATATTCCTTTGGAATTTCACTCATGT
7549058 C
131 C
* *
7549059 TTTAAAAGCTCTTCAAAATGAAGGTAATACTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
1 TTTAAAAACTCTTCAAAACGAAGGTAATACTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
* *
7549124 GTGCTGGGTTGCGATTTCCTGTTTGTTCAAAACAATTGAATATTCCTTTGGAATTTCACTCATGT
66 GTGCTGGGTTGCGATTTCCTGTTTGTTCAAAATAATCGAATATTCCTTTGGAATTTCACTCATGT
7549189 C
131 C
*
7549190 TTTAAAAACTCTTCAAAACGAAGGTAATACTCGATGTTTAGCAATTCGGGGAATCGTGCCCTATC
1 TTTAAAAACTCTTCAAAACGAAGGTAATACTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
* * *
7549255 GTGCTGGGTTGCGATTTCCTGTTTGTTCGAAATAACCGAATATTCCTTTAGAATTTCACTCATGT
66 GTGCTGGGTTGCGATTTCCTGTTTGTTCAAAATAATCGAATATTCCTTTGGAATTTCACTCATGT
7549320 TCTCTAAATT
Statistics
Matches: 243, Mismatches: 17, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
130 41 0.17
131 202 0.83
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (131 bp):
TTTAAAAACTCTTCAAAACGAAGGTAATACTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
GTGCTGGGTTGCGATTTCCTGTTTGTTCAAAATAATCGAATATTCCTTTGGAATTTCACTCATGT
C
Found at i:7550383 original size:22 final size:22
Alignment explanation
Indices: 7550355--7550397 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
7550345 TCATCATTCG
7550355 AAAAAATTA-AAAAATCTAAAAT
1 AAAAAATTATAAAAA-CTAAAAT
7550377 AAAAAATTATAAAAACTAAAA
1 AAAAAATTATAAAAACTAAAA
7550398 AATATATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (22 bp):
AAAAAATTATAAAAACTAAAAT
Found at i:7550391 original size:16 final size:18
Alignment explanation
Indices: 7550372--7550408 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
7550362 TAAAAAATCT
7550372 AAAA-TAAAAAAT-TATA
1 AAAACTAAAAAATATATA
7550388 AAAACTAAAAAATATATA
1 AAAACTAAAAAATATATA
7550406 AAA
1 AAA
7550409 GTATAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.21
17 8 0.42
18 7 0.37
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.22
Consensus pattern (18 bp):
AAAACTAAAAAATATATA
Found at i:7550481 original size:29 final size:27
Alignment explanation
Indices: 7550427--7550494 Score: 79
Period size: 27 Copynumber: 2.5 Consensus size: 27
7550417 ATGTATTTTA
7550427 AAAAATAA-AAATATGTTAAAATTTGT
1 AAAAATAATAAATATGTTAAAATTTGT
7550453 AAAAATAATAAATAT-TATAAAATAATTGT
1 AAAAATAATAAATATGT-TAAAAT--TTGT
*
7550482 -AAAATAATTAATA
1 AAAAATAATAAATA
7550495 AAAATTGAGT
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
26 9 0.24
27 12 0.32
28 12 0.32
29 4 0.11
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (27 bp):
AAAAATAATAAATATGTTAAAATTTGT
Found at i:7555414 original size:21 final size:21
Alignment explanation
Indices: 7555388--7555428 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7555378 ATCTGCTCAA
* *
7555388 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
7555409 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
7555429 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:7559642 original size:20 final size:20
Alignment explanation
Indices: 7559617--7559654 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
7559607 TTTAGCGTTG
7559617 GATGAATTAATTTTTTGGTA
1 GATGAATTAATTTTTTGGTA
7559637 GATGAATTAATTTTTTGG
1 GATGAATTAATTTTTTGG
7559655 ACTAAATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50
Consensus pattern (20 bp):
GATGAATTAATTTTTTGGTA
Found at i:7565077 original size:18 final size:18
Alignment explanation
Indices: 7565054--7565146 Score: 141
Period size: 18 Copynumber: 5.2 Consensus size: 18
7565044 CCCAACTACT
*
7565054 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
7565072 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
*
7565090 GTATACGTGAATAGTACT
1 GTATACGTGAATAGTACC
* * *
7565108 ATATACATGAATAGTGCC
1 GTATACGTGAATAGTACC
7565126 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
7565144 GTA
1 GTA
7565147 AACGGTCGTA
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 66 1.00
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:7565766 original size:3 final size:3
Alignment explanation
Indices: 7565758--7565787 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
7565748 AATCACAAAA
7565758 AAG AAG AAG AAG AAG AA- AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
7565788 CACATACCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 24 0.92
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:7565780 original size:14 final size:14
Alignment explanation
Indices: 7565761--7565787 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7565751 CACAAAAAAG
7565761 AAGAAGAAGAAGAA
1 AAGAAGAAGAAGAA
7565775 AAGAAGAAGAAGA
1 AAGAAGAAGAAGA
7565788 CACATACCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (14 bp):
AAGAAGAAGAAGAA
Found at i:7565923 original size:21 final size:22
Alignment explanation
Indices: 7565887--7565927 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
7565877 TCCCTATATT
7565887 TTTTTATATATTTAATATTTATC
1 TTTTTATATATTTAAT-TTTATC
7565910 TTTTTAT-T-TTTAATTTTA
1 TTTTTATATATTTAATTTTA
7565928 AGAATTCAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 6 0.33
22 1 0.06
23 7 0.39
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (22 bp):
TTTTTATATATTTAATTTTATC
Found at i:7568207 original size:9 final size:9
Alignment explanation
Indices: 7568193--7568217 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
7568183 AGTTGATCGT
7568193 TAATATACA
1 TAATATACA
7568202 TAATATACA
1 TAATATACA
7568211 TAATATA
1 TAATATA
7568218 TTAAAGCAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (9 bp):
TAATATACA
Found at i:7568347 original size:30 final size:30
Alignment explanation
Indices: 7568311--7568382 Score: 92
Period size: 31 Copynumber: 2.4 Consensus size: 30
7568301 GTTTCATTTT
*
7568311 AGTCACTTAACTTTTAAAAAA-TAACAAAAC
1 AGTCAC-TAACTTATAAAAAAGTAACAAAAC
* *
7568341 AGTCACTAACGTTATAAAAAAGTGACAACAC
1 AGTCACTAAC-TTATAAAAAAGTAACAAAAC
7568372 AGTCACTAACT
1 AGTCACTAACT
7568383 AACGGTTTCC
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
29 4 0.11
30 16 0.43
31 17 0.46
ACGTcount: A:0.49, C:0.19, G:0.08, T:0.24
Consensus pattern (30 bp):
AGTCACTAACTTATAAAAAAGTAACAAAAC
Found at i:7568438 original size:21 final size:21
Alignment explanation
Indices: 7568412--7568453 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
7568402 TTAACAGAAC
*
7568412 AGCTGATGTGGCAAGTTAACT
1 AGCTGACGTGGCAAGTTAACT
*
7568433 AGCTGACGTGGCCAGTTAACT
1 AGCTGACGTGGCAAGTTAACT
7568454 TGCCACGTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (21 bp):
AGCTGACGTGGCAAGTTAACT
Found at i:7569446 original size:21 final size:21
Alignment explanation
Indices: 7569420--7569459 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7569410 TCATGCGGCA
*
7569420 AGTTAACTGGCCACGTCAGCT
1 AGTTAACTGGCCACATCAGCT
*
7569441 AGTTAACTTGCCACATCAG
1 AGTTAACTGGCCACATCAG
7569460 TGGTTCTGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.25
Consensus pattern (21 bp):
AGTTAACTGGCCACATCAGCT
Found at i:7569560 original size:30 final size:31
Alignment explanation
Indices: 7569495--7569563 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
7569485 ACCGTTAGTC
* *
7569495 AGTGACTGTTTTGTCACTTTTTTATAATGTT
1 AGTGACTGTTTTGTCACTTTTTCATAAAGTT
*
7569526 AGTGACTGTTTTGTTA-TTTTTCA-AAAGTT
1 AGTGACTGTTTTGTCACTTTTTCATAAAGTT
7569555 GAGTGACTG
1 -AGTGACTG
7569564 AAATAAAACC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 5 0.15
30 14 0.41
31 15 0.44
ACGTcount: A:0.22, C:0.09, G:0.20, T:0.49
Consensus pattern (31 bp):
AGTGACTGTTTTGTCACTTTTTCATAAAGTT
Found at i:7571798 original size:17 final size:17
Alignment explanation
Indices: 7571778--7571810 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
7571768 TTGAATTTTT
7571778 AAATATTAAA-AATTTAA
1 AAATA-TAAATAATTTAA
7571795 AAATATAAATAATTTA
1 AAATATAAATAATTTA
7571811 TTTCTTTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AAATATAAATAATTTAA
Found at i:7571867 original size:15 final size:14
Alignment explanation
Indices: 7571831--7571874 Score: 54
Period size: 13 Copynumber: 3.1 Consensus size: 14
7571821 TTTTCTATGT
7571831 TTTTCAAATTTTT-
1 TTTTCAAATTTTTA
7571844 TTTTCAAATTTTTAA
1 TTTTCAAATTTTT-A
* *
7571859 TTTTGAAATGTTTA
1 TTTTCAAATTTTTA
7571873 TT
1 TT
7571875 GAATTTTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
13 13 0.48
14 3 0.11
15 11 0.41
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.64
Consensus pattern (14 bp):
TTTTCAAATTTTTA
Found at i:7572244 original size:14 final size:15
Alignment explanation
Indices: 7572225--7572253 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7572215 AATTCTAGTA
7572225 TATTTT-TTAAAATT
1 TATTTTATTAAAATT
7572239 TATTTTATTAAAATT
1 TATTTTATTAAAATT
7572254 ATTGTAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
TATTTTATTAAAATT
Found at i:7573331 original size:7 final size:7
Alignment explanation
Indices: 7573315--7573350 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
7573305 ATTTTGGCCC
7573315 TTTT-TT
1 TTTTCTT
7573321 TTTTCTT
1 TTTTCTT
7573328 TTTTCTT
1 TTTTCTT
7573335 TTTTC-T
1 TTTTCTT
7573341 TTTTCTT
1 TTTTCTT
7573348 TTT
1 TTT
7573351 GGATTTTGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 10 0.36
7 18 0.64
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (7 bp):
TTTTCTT
Found at i:7578910 original size:21 final size:21
Alignment explanation
Indices: 7578884--7578924 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7578874 AGACGAGCAA
* *
7578884 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
7578905 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
7578925 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:7584963 original size:18 final size:18
Alignment explanation
Indices: 7584931--7584969 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
7584921 TGTTTTGAAA
*
7584931 ATTTTT-AATTTTTTAAT
1 ATTTTTAAATTTTTAAAT
7584948 ATTTATTAAATTTTTAAAT
1 ATTT-TTAAATTTTTAAAT
7584967 ATT
1 ATT
7584970 AAAAATTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 4 0.21
18 2 0.11
19 13 0.68
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
ATTTTTAAATTTTTAAAT
Found at i:7600203 original size:15 final size:14
Alignment explanation
Indices: 7600171--7600219 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 14
7600161 TTAGATATTC
*
7600171 TTTTACTTTTATGAT
1 TTTTAC-TTTAAGAT
*
7600186 TTTTAGTTTAAGAGT
1 TTTTACTTTAAGA-T
*
7600201 TTTTTCTTTAAGAT
1 TTTTACTTTAAGAT
7600215 TTTTA
1 TTTTA
7600220 TTATTTTTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
14 11 0.39
15 17 0.61
ACGTcount: A:0.22, C:0.04, G:0.10, T:0.63
Consensus pattern (14 bp):
TTTTACTTTAAGAT
Found at i:7607900 original size:18 final size:18
Alignment explanation
Indices: 7607851--7607900 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
7607841 AAACTTTTTT
*
7607851 AAAAAAGTATAAAATTAA
1 AAAAAACTATAAAATTAA
*
7607869 AACAAAACTA-AAAATTAC
1 AA-AAAACTATAAAATTAA
*
7607887 AAAAAATTATAAAA
1 AAAAAACTATAAAA
7607901 CTCTAAGAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 6 0.22
18 15 0.56
19 6 0.22
ACGTcount: A:0.72, C:0.06, G:0.02, T:0.20
Consensus pattern (18 bp):
AAAAAACTATAAAATTAA
Found at i:7608280 original size:15 final size:16
Alignment explanation
Indices: 7608243--7608275 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7608233 ATTTTTTATC
*
7608243 TTTCT-TAATTTAAAT
1 TTTCTATAATTCAAAT
7608258 TTTCTATAATTCAAAT
1 TTTCTATAATTCAAAT
7608274 TT
1 TT
7608276 GTATATATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.58
Consensus pattern (16 bp):
TTTCTATAATTCAAAT
Found at i:7612850 original size:21 final size:21
Alignment explanation
Indices: 7612824--7612864 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7612814 AGACGAGCAA
* *
7612824 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
7612845 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
7612865 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:7620136 original size:49 final size:49
Alignment explanation
Indices: 7620074--7620174 Score: 202
Period size: 49 Copynumber: 2.1 Consensus size: 49
7620064 GTATGAATTA
7620074 AGATAGAAAAGTAAGTGAATTTAGTTAGGATTAAATTGAAATTAAAAGT
1 AGATAGAAAAGTAAGTGAATTTAGTTAGGATTAAATTGAAATTAAAAGT
7620123 AGATAGAAAAGTAAGTGAATTTAGTTAGGATTAAATTGAAATTAAAAGT
1 AGATAGAAAAGTAAGTGAATTTAGTTAGGATTAAATTGAAATTAAAAGT
7620172 AGA
1 AGA
7620175 AAATTAACAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 52 1.00
ACGTcount: A:0.50, C:0.00, G:0.21, T:0.30
Consensus pattern (49 bp):
AGATAGAAAAGTAAGTGAATTTAGTTAGGATTAAATTGAAATTAAAAGT
Found at i:7624233 original size:22 final size:22
Alignment explanation
Indices: 7624208--7624251 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7624198 TAGTCATATA
7624208 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
7624230 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
7624252 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:7624287 original size:13 final size:14
Alignment explanation
Indices: 7624271--7624312 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
7624261 TTTCAATTTT
7624271 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
7624284 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
7624299 ATTTTAAATAATAT
1 ATTTT-AATAATAT
7624313 TATTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:7624297 original size:16 final size:16
Alignment explanation
Indices: 7624275--7624311 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
7624265 AATTTTATTT
7624275 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
7624292 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
7624307 TAATA
1 TAATA
7624312 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:7624373 original size:19 final size:19
Alignment explanation
Indices: 7624346--7624382 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7624336 TCAATATTAA
*
7624346 TATTTCAATAATAAATATT
1 TATTACAATAATAAATATT
*
7624365 TATTACAATTATAAATAT
1 TATTACAATAATAAATAT
7624383 ATTAATAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (19 bp):
TATTACAATAATAAATATT
Found at i:7624892 original size:13 final size:14
Alignment explanation
Indices: 7624857--7624894 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
7624847 CCAAAAAAGT
7624857 AAATCATTTTCCAG
1 AAATCATTTTCCAG
7624871 AAATCATTTTCC-G
1 AAATCATTTTCCAG
*
7624884 AAGTCATTTTC
1 AAATCATTTTC
7624895 AGTGAAACAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 11 0.48
14 12 0.52
ACGTcount: A:0.32, C:0.21, G:0.08, T:0.39
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:7634073 original size:20 final size:20
Alignment explanation
Indices: 7634025--7634092 Score: 66
Period size: 20 Copynumber: 3.2 Consensus size: 20
7634015 TTCTTACATT
*
7634025 GTAAATCATTAAAAATATTGG
1 GTAAATCATTAGAAATATT-G
7634046 TAGTAAAT-AGTTAGAAATATTG
1 --GTAAATCA-TTAGAAATATTG
* *
7634068 GTAAATCATTAGATATTTTG
1 GTAAATCATTAGAAATATTG
7634088 GTAAA
1 GTAAA
7634093 AGCTTTTCCT
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
20 21 0.52
21 1 0.03
22 2 0.05
23 16 0.40
ACGTcount: A:0.44, C:0.03, G:0.16, T:0.37
Consensus pattern (20 bp):
GTAAATCATTAGAAATATTG
Found at i:7638660 original size:14 final size:14
Alignment explanation
Indices: 7638641--7638683 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
7638631 GAAAGATTTG
7638641 AAAAAAATATAGAT
1 AAAAAAATATAGAT
* *
7638655 AAAAAAATAAAAAT
1 AAAAAAATATAGAT
7638669 AAAAATAA-ATAGAT
1 AAAAA-AATATAGAT
7638683 A
1 A
7638684 TGCTTGATAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
14 22 0.92
15 2 0.08
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.19
Consensus pattern (14 bp):
AAAAAAATATAGAT
Found at i:7638930 original size:19 final size:19
Alignment explanation
Indices: 7638906--7638945 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
7638896 TAAGAATATA
*
7638906 ATCCAAACTAAATTAAAAT
1 ATCCAAACCAAATTAAAAT
*
7638925 ATCCAACCCAAATTAAAAT
1 ATCCAAACCAAATTAAAAT
7638944 AT
1 AT
7638946 TTTTTATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.55, C:0.20, G:0.00, T:0.25
Consensus pattern (19 bp):
ATCCAAACCAAATTAAAAT
Found at i:7641514 original size:23 final size:23
Alignment explanation
Indices: 7641496--7641549 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
7641486 GGTATACACG
7641496 TACATAATAAAAATATATACTAA
1 TACATAATAAAAATATATACTAA
* **
7641519 TACATAATAATAATA-ATGGTAA
1 TACATAATAAAAATATATACTAA
7641541 TAC-TAATAA
1 TACATAATAA
7641550 TACTAATAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 6 0.21
22 8 0.29
23 14 0.50
ACGTcount: A:0.57, C:0.07, G:0.04, T:0.31
Consensus pattern (23 bp):
TACATAATAAAAATATATACTAA
Found at i:7641530 original size:3 final size:3
Alignment explanation
Indices: 7641499--7641569 Score: 54
Period size: 3 Copynumber: 23.3 Consensus size: 3
7641489 ATACACGTAC
* * * * *
7641499 ATA ATA AAA ATA TATA CTA ATA CATA ATA ATA ATA ATG GTA ATA CTA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
* *
7641546 ATA ATA CTA ATA AT- ATA AAA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
7641570 CAAGGATATT
Statistics
Matches: 51, Mismatches: 14, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
2 2 0.04
3 43 0.84
4 6 0.12
ACGTcount: A:0.61, C:0.06, G:0.03, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:7642057 original size:18 final size:18
Alignment explanation
Indices: 7642030--7642067 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
7642020 AAGAAAAAAA
*
7642030 AGAAGAGAGAGGGAAGAG
1 AGAAGAGAGAGAGAAGAG
*
7642048 AGAAGGGAGAGAGAAGAG
1 AGAAGAGAGAGAGAAGAG
7642066 AG
1 AG
7642068 GGGAATCCGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (18 bp):
AGAAGAGAGAGAGAAGAG
Found at i:7642062 original size:11 final size:12
Alignment explanation
Indices: 7642031--7642063 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
7642021 AGAAAAAAAA
7642031 GAAGAGAG-AGG
1 GAAGAGAGAAGG
7642042 GAAGAGAGAAGG
1 GAAGAGAGAAGG
7642054 G-AGAGAGAAG
1 GAAGAGAGAAG
7642064 AGAGGGGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 17 0.81
12 4 0.19
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (12 bp):
GAAGAGAGAAGG
Found at i:7648927 original size:5 final size:5
Alignment explanation
Indices: 7648917--7648953 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
7648907 TTATGTTTTA
7648917 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
7648954 AAACTAAAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:7649296 original size:15 final size:15
Alignment explanation
Indices: 7649276--7649332 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
7649266 AGATGAATTT
7649276 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
7649291 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
7649306 ATTGAATTTATATTG
1 ATTGAATTTATATTG
7649321 ATTGAA-TTATAT
1 ATTGAATTTATAT
7649333 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:7649763 original size:21 final size:22
Alignment explanation
Indices: 7649706--7649766 Score: 79
Period size: 21 Copynumber: 2.8 Consensus size: 22
7649696 TTTATCGATC
7649706 AGGCACTTTATGTGTCGTATTTT
1 AGGCACTTTATGTGTCG-ATTTT
* **
7649729 AGGCACCTCGTGTGTC-ATTTT
1 AGGCACTTTATGTGTCGATTTT
7649750 AGGCACTTTATGTGTCG
1 AGGCACTTTATGTGTCG
7649767 TATACTGATC
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
21 18 0.58
23 13 0.42
ACGTcount: A:0.16, C:0.18, G:0.25, T:0.41
Consensus pattern (22 bp):
AGGCACTTTATGTGTCGATTTT
Found at i:7651039 original size:115 final size:114
Alignment explanation
Indices: 7650907--7651133 Score: 400
Period size: 115 Copynumber: 2.0 Consensus size: 114
7650897 ATTTTTTAAG
*
7650907 GTCGTAAAAAAATTATTTATAAGCTAAATTTGTAAGTCAACTAATAATAAAATAATCTAGACTAA
1 GTCGTAAAAAAATTATTTATAAGCTAAATTTGTAAGTCAAATAATAATAAAATAATCTAGACTAA
* *
7650972 TCAGAGTTCGACTATAACAAATAAACAGAGTTTAACTGAGAGATTATCA
66 TCAGAGTTCGACAATAACAAATAAACAAAGTTTAACTGAGAGATTATCA
*
7651021 GTCGTAAAAAAAATTATTTATAAGCTAAGTTTGTAAGTCAAATAATAATAAAATAATCTAGACTA
1 GTCGT-AAAAAAATTATTTATAAGCTAAATTTGTAAGTCAAATAATAATAAAATAATCTAGACTA
*
7651086 ATTAGAGTTCGACAATAACAAATAAACAAAGTTTAACTGAGAGATTAT
65 ATCAGAGTTCGACAATAACAAATAAACAAAGTTTAACTGAGAGATTAT
7651134 ATTTCAAATT
Statistics
Matches: 107, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
114 5 0.05
115 102 0.95
ACGTcount: A:0.48, C:0.10, G:0.12, T:0.30
Consensus pattern (114 bp):
GTCGTAAAAAAATTATTTATAAGCTAAATTTGTAAGTCAAATAATAATAAAATAATCTAGACTAA
TCAGAGTTCGACAATAACAAATAAACAAAGTTTAACTGAGAGATTATCA
Found at i:7652730 original size:2 final size:2
Alignment explanation
Indices: 7652723--7652758 Score: 56
Period size: 2 Copynumber: 18.0 Consensus size: 2
7652713 TTGCTCATAC
7652723 AT AT AT AT AT AT AT AT AT AT AT AT AT ACT -T AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT
7652759 GCTGTTGTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 1 0.03
2 30 0.94
3 1 0.03
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7653006 original size:24 final size:22
Alignment explanation
Indices: 7652978--7653028 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 22
7652968 ATTCTAATCA
*
7652978 TTAAAT-TAAATGTTAAATGTCATT
1 TTAAATCT-AATGTGAAATGT--TT
7653002 TTAAATCTAATGTGAAATGTTT
1 TTAAATCTAATGTGAAATGTTT
7653024 TTAAA
1 TTAAA
7653029 ATATATAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
22 7 0.28
24 17 0.68
25 1 0.04
ACGTcount: A:0.41, C:0.04, G:0.10, T:0.45
Consensus pattern (22 bp):
TTAAATCTAATGTGAAATGTTT
Found at i:7657072 original size:17 final size:18
Alignment explanation
Indices: 7657050--7657083 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7657040 ATAAATTTTA
7657050 AAAGTAAAAC-TAAAAAT
1 AAAGTAAAACTTAAAAAT
*
7657067 AAAGTAATACTTAAAAA
1 AAAGTAAAACTTAAAAA
7657084 AGAGAGTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.68, C:0.06, G:0.06, T:0.21
Consensus pattern (18 bp):
AAAGTAAAACTTAAAAAT
Found at i:7657308 original size:21 final size:21
Alignment explanation
Indices: 7657266--7657305 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
7657256 AATATTGATA
7657266 ATTTTAAAATATAATTTAAAT
1 ATTTTAAAATATAATTTAAAT
*
7657287 ATTTTAAAA-CTAATTTAAA
1 ATTTTAAAATATAATTTAAA
7657306 ATAATAACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (21 bp):
ATTTTAAAATATAATTTAAAT
Found at i:7664284 original size:50 final size:49
Alignment explanation
Indices: 7664194--7664355 Score: 164
Period size: 50 Copynumber: 3.3 Consensus size: 49
7664184 TACTCAATAG
* *
7664194 GCTTCCATCAATTCAT-AAAAAGACTTGTTTTTATCATTTCAGTTATCAG
1 GCTTCCATCAACTCATGAAAAAGACTTG-TTTTATCATTTCAGTTATCAA
* * *
7664243 GCTTCCATCAACTCATGCAAACAGACTTGTTTTATCATTTCAGTTGTTAA
1 GCTTCCATCAACTCATG-AAAAAGACTTGTTTTATCATTTCAGTTATCAA
* * * * * * *
7664293 ACTTCCATCAAATTATGTAGAGAGACTTGTTTTATCATCTCAGTCATCAA
1 GCTTCCATCAACTCATG-AAAAAGACTTGTTTTATCATTTCAGTTATCAA
**
7664343 GCTTTTATCAACT
1 GCTTCCATCAACT
7664356 GAGACTTATT
Statistics
Matches: 92, Mismatches: 19, Indels: 3
0.81 0.17 0.03
Matches are distributed among these distances:
49 15 0.16
50 67 0.73
51 10 0.11
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.39
Consensus pattern (49 bp):
GCTTCCATCAACTCATGAAAAAGACTTGTTTTATCATTTCAGTTATCAA
Found at i:7665236 original size:29 final size:29
Alignment explanation
Indices: 7665204--7665304 Score: 95
Period size: 28 Copynumber: 3.5 Consensus size: 29
7665194 AAATTAAATT
7665204 AACTAAAAAAGAAAGAAAACAACTTACCA
1 AACTAAAAAAGAAAGAAAACAACTTACCA
* **
7665233 AACTAAAAGGATATG-TAGAAAA-AGA-AGACC-
1 AACTAAAA--A-A-GAAAGAAAACA-ACTTACCA
7665263 AACTAAAAAAGAAAGAAAACAACTTACCA
1 AACTAAAAAAGAAAGAAAACAACTTACCA
7665292 AACT-AAAAAGAAA
1 AACTAAAAAAGAAA
7665305 TTTAGAAAAA
Statistics
Matches: 57, Mismatches: 6, Indels: 19
0.70 0.07 0.23
Matches are distributed among these distances:
26 1 0.02
27 8 0.14
28 14 0.25
29 12 0.21
30 8 0.14
31 5 0.09
32 8 0.14
33 1 0.02
ACGTcount: A:0.64, C:0.14, G:0.11, T:0.11
Consensus pattern (29 bp):
AACTAAAAAAGAAAGAAAACAACTTACCA
Found at i:7665240 original size:59 final size:58
Alignment explanation
Indices: 7665204--7665322 Score: 193
Period size: 59 Copynumber: 2.0 Consensus size: 58
7665194 AAATTAAATT
* *
7665204 AACTAAAAAAGAAAGAAAACAACTTACCAAACTAAAAGGATATGTAGAAAAAGAAGACC
1 AACTAAAAAAGAAAGAAAACAACTTACCAAACTAAAAAGAAAT-TAGAAAAAGAAGACC
7665263 AACTAAAAAAGAAAGAAAACAACTTACCAAACTAAAAAGAAATTTAGAAAAAGGAAGACC
1 AACTAAAAAAGAAAGAAAACAACTTACCAAACTAAAAAGAAA-TTAGAAAAA-GAAGACC
7665323 GGGAAACAAA
Statistics
Matches: 56, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
59 48 0.86
60 8 0.14
ACGTcount: A:0.62, C:0.13, G:0.13, T:0.12
Consensus pattern (58 bp):
AACTAAAAAAGAAAGAAAACAACTTACCAAACTAAAAAGAAATTAGAAAAAGAAGACC
Found at i:7666761 original size:14 final size:14
Alignment explanation
Indices: 7666742--7666772 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
7666732 ATCATCAACT
7666742 TTATACACAATAAA
1 TTATACACAATAAA
*
7666756 TTATACATAATAAA
1 TTATACACAATAAA
7666770 TTA
1 TTA
7666773 GCAAATTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.35
Consensus pattern (14 bp):
TTATACACAATAAA
Found at i:7676083 original size:86 final size:86
Alignment explanation
Indices: 7675934--7676091 Score: 192
Period size: 86 Copynumber: 1.8 Consensus size: 86
7675924 TTCGCAATTG
* * * * * * ** *
7675934 AAAAATTGTAATTTAATCTCTTTAAAAATTATTAAATTATAAATTTATGTATGATAAATTTATAT
1 AAAAATTATAATTTAATCTCTTAAAAAATGATGAAATTATAAACTAATACATGATAAAATTATAT
*
7675999 TTTAACACCTTAAAAATGAAA
66 ATTAACACCTTAAAAATGAAA
* *
7676020 AAAAATTAT-ATTTAATTTTCTTAAAAAATGATGAAATTATAAACTAATACATTATAAAATTATA
1 AAAAATTATAATTTAA-TCTCTTAAAAAATGATGAAATTATAAACTAATACATGATAAAATTATA
7676084 TATTAACA
65 TATTAACA
7676092 TCTCAAACAT
Statistics
Matches: 59, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
85 6 0.10
86 53 0.90
ACGTcount: A:0.50, C:0.06, G:0.04, T:0.41
Consensus pattern (86 bp):
AAAAATTATAATTTAATCTCTTAAAAAATGATGAAATTATAAACTAATACATGATAAAATTATAT
ATTAACACCTTAAAAATGAAA
Found at i:7677552 original size:18 final size:18
Alignment explanation
Indices: 7677529--7677564 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
7677519 TTTCACATAG
*
7677529 TGTTATATTATTTATGTA
1 TGTTATATTATTCATGTA
7677547 TGTTATATTATTCATGTA
1 TGTTATATTATTCATGTA
7677565 GACTTTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.28, C:0.03, G:0.11, T:0.58
Consensus pattern (18 bp):
TGTTATATTATTCATGTA
Found at i:7677767 original size:63 final size:63
Alignment explanation
Indices: 7677657--7677776 Score: 163
Period size: 63 Copynumber: 1.9 Consensus size: 63
7677647 TCTAAGTACT
* *
7677657 ATAATAAAACATATATTGATAGTTTATGTACCATATTAGATAATTTATAAAAGTACAAGTATC
1 ATAATAAAACATATATTGATAATTTATGTACCATATTAGATAATTTATAAAAATACAAGTATC
* * *
7677720 ATAATAAAATATATATTTATAATTTATGTCCCATATT-GA-ACATTTTATAAAAATACA
1 ATAATAAAACATATATTGATAATTTATGTACCATATTAGATA-A-TTTATAAAAATACA
7677777 TATACCAAAC
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
61 1 0.02
62 3 0.06
63 46 0.92
ACGTcount: A:0.47, C:0.08, G:0.07, T:0.38
Consensus pattern (63 bp):
ATAATAAAACATATATTGATAATTTATGTACCATATTAGATAATTTATAAAAATACAAGTATC
Found at i:7681022 original size:25 final size:25
Alignment explanation
Indices: 7680994--7681048 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
7680984 GATAAGCTCA
*
7680994 CAGCTCTCACTTCTAGCTAAGCTTG
1 CAGCTCTCACATCTAGCTAAGCTTG
* * * *
7681019 CAGCTTTGACATCTTGCTGAGCTTG
1 CAGCTCTCACATCTAGCTAAGCTTG
7681044 CAGCT
1 CAGCT
7681049 TGCACATTGG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.18, C:0.29, G:0.20, T:0.33
Consensus pattern (25 bp):
CAGCTCTCACATCTAGCTAAGCTTG
Found at i:7692013 original size:14 final size:14
Alignment explanation
Indices: 7691994--7692037 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
7691984 TTTAACCTCA
*
7691994 AAAAATATAAAATT
1 AAAAATATAAAAAT
*
7692008 AAAAATTTAAAAAT
1 AAAAATATAAAAAT
*
7692022 AAAAA-ATTAAAAT
1 AAAAATATAAAAAT
7692035 AAA
1 AAA
7692038 TTTTTAATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
13 9 0.35
14 17 0.65
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (14 bp):
AAAAATATAAAAAT
Found at i:7695132 original size:3 final size:3
Alignment explanation
Indices: 7695118--7695174 Score: 53
Period size: 3 Copynumber: 18.3 Consensus size: 3
7695108 TTGGTAATAG
* *
7695118 TTA TTC TTA TTA TTA TTA TTA TTA TTA TT- TTA ATA TGTA TATA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA T-TA TTA
*
7695164 TGTA ATA TTA T
1 T-TA TTA TTA T
7695175 ATACATGCTT
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
2 2 0.05
3 34 0.77
4 8 0.18
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:7695164 original size:19 final size:17
Alignment explanation
Indices: 7695125--7695177 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
7695115 TAGTTATTCT
*
7695125 TATTAT-TATTATTAT-
1 TATTATGTAATATTATA
*
7695140 TATTATTTTAATATGTATA
1 TATTA-TGTAATAT-TATA
7695159 TATTATGTAATATTATA
1 TATTATGTAATATTATA
7695176 TA
1 TA
7695178 CATGCTTTGA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
15 5 0.16
16 1 0.03
17 11 0.34
18 10 0.31
19 5 0.16
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (17 bp):
TATTATGTAATATTATA
Found at i:7714401 original size:17 final size:18
Alignment explanation
Indices: 7714381--7714419 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
7714371 ATTCATTGTA
*
7714381 TTATTTCAT-TAAAATTC
1 TTATTTAATGTAAAATTC
7714398 TTA-TTAATGTAAAATTC
1 TTATTTAATGTAAAATTC
7714415 TTATT
1 TTATT
7714420 ATTTAATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
16 4 0.21
17 14 0.74
18 1 0.05
ACGTcount: A:0.36, C:0.08, G:0.03, T:0.54
Consensus pattern (18 bp):
TTATTTAATGTAAAATTC
Found at i:7717541 original size:22 final size:23
Alignment explanation
Indices: 7717516--7717561 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
7717506 CAACCAAATC
7717516 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
7717538 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
7717561 A
1 A
7717562 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:7717567 original size:23 final size:23
Alignment explanation
Indices: 7717523--7717567 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
7717513 ATCAATTCAA
*
7717523 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
7717546 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
7717568 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:7721735 original size:26 final size:24
Alignment explanation
Indices: 7721695--7721754 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
7721685 TTATTTTATT
* * *
7721695 AAATAAAAAAATTTAAAAATATAA
1 AAATAAATATATTTAAAAACATAA
7721719 TAAATCAAATATATTTAAAAACATAA
1 -AAAT-AAATATATTTAAAAACATAA
7721745 AAATAAATAT
1 AAATAAATAT
7721755 TAAAACAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.28
Consensus pattern (24 bp):
AAATAAATATATTTAAAAACATAA
Found at i:7721766 original size:22 final size:20
Alignment explanation
Indices: 7721725--7721770 Score: 56
Period size: 22 Copynumber: 2.2 Consensus size: 20
7721715 ATAATAAATC
* *
7721725 AAATATATTTAAAAACATAA
1 AAATAAATTTAAAAAAATAA
7721745 AAATAAATATTAAAACAAATAA
1 AAATAAAT-TTAAAA-AAATAA
7721767 AAAT
1 AAAT
7721771 GATACTAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.32
21 6 0.27
22 9 0.41
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.26
Consensus pattern (20 bp):
AAATAAATTTAAAAAAATAA
Found at i:7722164 original size:3 final size:3
Alignment explanation
Indices: 7722156--7722233 Score: 72
Period size: 3 Copynumber: 26.7 Consensus size: 3
7722146 TGTTATCTTC
* * *
7722156 ATT ATT ATT GA-T ATT ATT ATT ATT ATT ATT GTT -TT TTT ATT ACT
1 ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * *
7722200 ATT ATC ATT ATT A-T ATT ATT ACT ATT AGT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
7722234 ATTTATATTC
Statistics
Matches: 61, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
2 5 0.08
3 55 0.90
4 1 0.02
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:7722202 original size:23 final size:23
Alignment explanation
Indices: 7722156--7722233 Score: 93
Period size: 23 Copynumber: 3.3 Consensus size: 23
7722146 TGTTATCTTC
*
7722156 ATTATTATTGATATTATTATTATT
1 ATTATTATT-ATATTATTACTATT
* * *
7722180 ATTATTGTTTTTTTATTACTATT
1 ATTATTATTATATTATTACTATT
*
7722203 ATCATTATTATATTATTACTATT
1 ATTATTATTATATTATTACTATT
*
7722226 AGTATTAT
1 ATTATTAT
7722234 ATTTATATTC
Statistics
Matches: 44, Mismatches: 10, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
23 36 0.82
24 8 0.18
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.62
Consensus pattern (23 bp):
ATTATTATTATATTATTACTATT
Found at i:7722216 original size:20 final size:20
Alignment explanation
Indices: 7722193--7722236 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
7722183 ATTGTTTTTT
* *
7722193 TATTACTATTATCATTATTA
1 TATTACTACTATCAGTATTA
* *
7722213 TATTATTACTATTAGTATTA
1 TATTACTACTATCAGTATTA
7722233 TATT
1 TATT
7722237 TATATTCATG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.34, C:0.07, G:0.02, T:0.57
Consensus pattern (20 bp):
TATTACTACTATCAGTATTA
Found at i:7722242 original size:23 final size:21
Alignment explanation
Indices: 7722170--7722242 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 21
7722160 TTATTGATAT
* * *
7722170 TATTATTATTATTATTGTTTTTT
1 TATTACTATTA-TATT-ATTTTA
*
7722193 TATTACTATTATCATTATTATA
1 TATTACTATTAT-ATTATTTTA
7722215 TTATTACTATTAGTATTATATTTA
1 -TATTACTATTA-TATTAT-TTTA
7722239 TATT
1 TATT
7722243 CATGTTTATT
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
22 4 0.10
23 33 0.80
24 4 0.10
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.63
Consensus pattern (21 bp):
TATTACTATTATATTATTTTA
Found at i:7722357 original size:3 final size:3
Alignment explanation
Indices: 7722349--7722375 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
7722339 CTATTTATGT
7722349 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
7722376 CTTTTTTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:7722471 original size:26 final size:26
Alignment explanation
Indices: 7722414--7722527 Score: 79
Period size: 27 Copynumber: 4.2 Consensus size: 26
7722404 ATTATTATCA
* *
7722414 ATTTTAAATATTTTACATATATAATTT
1 ATTTTAAATATTATACGTATAT-ATTT
*
7722441 CTTTTAAACTATTATACGTAT-TATTT
1 ATTTTAAA-TATTATACGTATATATTT
* * *
7722467 ATTTTGAAATTTTATATGTATCT-TTGT
1 ATTTT-AAATATTATACGTATATATT-T
**
7722494 ATTTTAAATTATTATATATATACATATTT
1 ATTTTAAA-TATTATACGTAT--ATATTT
7722523 ATTTT
1 ATTTT
7722528 TTTAAAATAT
Statistics
Matches: 70, Mismatches: 9, Indels: 14
0.75 0.10 0.15
Matches are distributed among these distances:
26 23 0.33
27 28 0.40
28 10 0.14
29 7 0.10
30 2 0.03
ACGTcount: A:0.34, C:0.05, G:0.04, T:0.57
Consensus pattern (26 bp):
ATTTTAAATATTATACGTATATATTT
Found at i:7722508 original size:27 final size:26
Alignment explanation
Indices: 7722414--7722510 Score: 81
Period size: 26 Copynumber: 3.7 Consensus size: 26
7722404 ATTATTATCA
* * * *
7722414 ATTTTAAATATTTTACATATATAATTT
1 ATTTTAAAT-TATTATATGTATTATTT
* * *
7722441 CTTTTAAACTATTATACGTATTATTT
1 ATTTTAAATTATTATATGTATTATTT
7722467 ATTTTGAAATT-TTATATGTATCT-TTGT
1 ATTTT-AAATTATTATATGTAT-TATT-T
7722494 ATTTTAAATTATTATAT
1 ATTTTAAATTATTATAT
7722511 ATATACATAT
Statistics
Matches: 56, Mismatches: 10, Indels: 8
0.76 0.14 0.11
Matches are distributed among these distances:
26 32 0.57
27 24 0.43
ACGTcount: A:0.34, C:0.05, G:0.04, T:0.57
Consensus pattern (26 bp):
ATTTTAAATTATTATATGTATTATTT
Found at i:7722952 original size:27 final size:26
Alignment explanation
Indices: 7722910--7723005 Score: 74
Period size: 27 Copynumber: 3.6 Consensus size: 26
7722900 TACTTTGTGA
7722910 ATTATTTATCTT-AATTTA-TTTAACAT
1 ATTATTTAT-TTAAATTTACTTT-ACAT
*
7722936 ATTATTTATTTGAAATTTACTTTATAT
1 ATTATTTATTT-AAATTTACTTTACAT
*
7722963 ATTATGTTATTTCAAATTGT--TTTATAT
1 ATTAT-TTATTT-AAATT-TACTTTACAT
*
7722990 TTTATTTATGTTAAAT
1 ATTATTTAT-TTAAAT
7723006 CTTTTTCATA
Statistics
Matches: 61, Mismatches: 3, Indels: 12
0.80 0.04 0.16
Matches are distributed among these distances:
25 2 0.03
26 17 0.28
27 27 0.44
28 14 0.23
29 1 0.02
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.59
Consensus pattern (26 bp):
ATTATTTATTTAAATTTACTTTACAT
Found at i:7745823 original size:22 final size:23
Alignment explanation
Indices: 7745776--7745824 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
7745766 AGTTGAGGCT
*
7745776 GTGTGGGGTTATATAACACAACC
1 GTGTGGGGCTATATAACACAACC
* *
7745799 GTGTGGGGCTATA-CACACAATC
1 GTGTGGGGCTATATAACACAACC
7745821 GTGT
1 GTGT
7745825 CCCTAAGCCA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 11 0.48
23 12 0.52
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.27
Consensus pattern (23 bp):
GTGTGGGGCTATATAACACAACC
Found at i:7750055 original size:22 final size:20
Alignment explanation
Indices: 7750029--7750077 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 20
7750019 ACTTAAAATG
*
7750029 TATATTTGAAATGTTTTATATA
1 TATATTTGAAAT-TTTGA-ATA
*
7750051 TATATTTTAAATTTTGAATA
1 TATATTTGAAATTTTGAATA
7750071 TATATTT
1 TATATTT
7750078 CAGAAATTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 10 0.40
21 4 0.16
22 11 0.44
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (20 bp):
TATATTTGAAATTTTGAATA
Found at i:7750123 original size:21 final size:23
Alignment explanation
Indices: 7750097--7750151 Score: 78
Period size: 21 Copynumber: 2.5 Consensus size: 23
7750087 TTTTTCTAAA
*
7750097 TTTTAAATATTTTTAA-ATTA-T
1 TTTTAAATATTTTAAAGATTATT
*
7750118 TTTTAAAGATTTTAAAGATTATT
1 TTTTAAATATTTTAAAGATTATT
7750141 TTTTAAATATT
1 TTTTAAATATT
7750152 AAATATATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 14 0.48
22 4 0.14
23 11 0.38
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (23 bp):
TTTTAAATATTTTAAAGATTATT
Found at i:7750167 original size:11 final size:10
Alignment explanation
Indices: 7750097--7750151 Score: 56
Period size: 10 Copynumber: 5.1 Consensus size: 10
7750087 TTTTTCTAAA
7750097 TTTTAAATAT
1 TTTTAAATAT
7750107 TTTTAAATTAT
1 TTTTAAA-TAT
*
7750118 TTTTAAAGAT
1 TTTTAAATAT
*
7750128 TTTAAAGATTATT
1 TTTTAA-A-TA-T
7750141 TTTTAAATAT
1 TTTTAAATAT
7750151 T
1 T
7750152 AAATATATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
10 16 0.43
11 13 0.35
12 2 0.05
13 6 0.16
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (10 bp):
TTTTAAATAT
Found at i:7750174 original size:20 final size:20
Alignment explanation
Indices: 7750109--7750171 Score: 65
Period size: 20 Copynumber: 3.0 Consensus size: 20
7750099 TTAAATATTT
*
7750109 TTAAAT-TATTTTTAAAGATT
1 TTAAATATATTTTTAAA-ATA
* *
7750129 TTAAAGATTATTTTTTAAATA
1 TTAAATA-TATTTTTAAAATA
7750150 TTAAATATATTTTTAATAATA
1 TTAAATATATTTTTAA-AATA
7750171 T
1 T
7750172 AAAACATTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
20 13 0.37
21 13 0.37
22 9 0.26
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (20 bp):
TTAAATATATTTTTAAAATA
Found at i:7750285 original size:20 final size:20
Alignment explanation
Indices: 7750260--7750378 Score: 72
Period size: 20 Copynumber: 6.7 Consensus size: 20
7750250 GTTTTATAAT
7750260 ATATATTTTTTAAATTTTAA
1 ATATATTTTTTAAATTTTAA
7750280 ATATATATTTTT--A----AA
1 ATATAT-TTTTTAAATTTTAA
*
7750295 AT-TATTTTTTTAATTTTAA
1 ATATATTTTTTAAATTTTAA
7750314 ATAT-TATTTTTAAA--TT--
1 ATATAT-TTTTTAAATTTTAA
* *
7750330 AT-T-TTTTTAAAAATTT-A
1 ATATATTTTTTAAATTTTAA
*
7750347 A-ATATTTTTTAAATATTAA
1 ATATATTTTTTAAATTTTAA
7750366 ATATATTTTTTAA
1 ATATATTTTTTAA
7750379 TAATATAAAA
Statistics
Matches: 78, Mismatches: 5, Indels: 32
0.68 0.04 0.28
Matches are distributed among these distances:
13 5 0.06
14 10 0.13
15 7 0.09
16 4 0.05
17 2 0.03
18 12 0.15
19 8 0.10
20 25 0.32
21 5 0.06
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
ATATATTTTTTAAATTTTAA
Found at i:7750285 original size:22 final size:23
Alignment explanation
Indices: 7750251--7750297 Score: 78
Period size: 22 Copynumber: 2.1 Consensus size: 23
7750241 ATTTGAAATG
*
7750251 TTTTATAATATATATTTTTTAAA
1 TTTTATAATATATATTTTTAAAA
7750274 TTTTA-AATATATATTTTTAAAA
1 TTTTATAATATATATTTTTAAAA
7750296 TT
1 TT
7750298 ATTTTTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (23 bp):
TTTTATAATATATATTTTTAAAA
Found at i:7750307 original size:35 final size:34
Alignment explanation
Indices: 7750251--7750364 Score: 137
Period size: 34 Copynumber: 3.3 Consensus size: 34
7750241 ATTTGAAATG
*
7750251 TTTTATAATATATATTTTTTAAATTTTAAATATATAT
1 TTTTAAAAT-TAT-TTTTTTAAATTTTAAATAT-TAT
7750288 TTTTAAAATTATTTTTTT-AATTTTAAATATTAT
1 TTTTAAAATTATTTTTTTAAATTTTAAATATTAT
*
7750321 TTTT-AAATTATTTTTTTAAAAATTTAAATA-T-T
1 TTTTAAAATTATTTTTTT-AAATTTTAAATATTAT
7750353 TTTTAAATATTA
1 TTTTAAA-ATTA
7750365 AATATATTTT
Statistics
Matches: 71, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
32 18 0.25
33 10 0.14
34 26 0.37
35 6 0.08
36 3 0.04
37 8 0.11
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (34 bp):
TTTTAAAATTATTTTTTTAAATTTTAAATATTAT
Found at i:7750326 original size:13 final size:13
Alignment explanation
Indices: 7750274--7750340 Score: 58
Period size: 13 Copynumber: 5.5 Consensus size: 13
7750264 ATTTTTTAAA
7750274 TTTTAAATATATAT
1 TTTTAAATAT-TAT
7750288 TTTTAAA-ATTA-
1 TTTTAAATATTAT
*
7750299 TTTT---T-TTAA
1 TTTTAAATATTAT
7750308 TTTTAAATATTAT
1 TTTTAAATATTAT
7750321 TTTTAAATTATT-T
1 TTTTAAA-TATTAT
7750334 TTTTAAA
1 TTTTAAA
7750341 AATTTAAATA
Statistics
Matches: 45, Mismatches: 1, Indels: 15
0.74 0.02 0.25
Matches are distributed among these distances:
8 3 0.07
9 4 0.09
11 4 0.09
12 3 0.07
13 20 0.44
14 11 0.24
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
TTTTAAATATTAT
Found at i:7750345 original size:12 final size:12
Alignment explanation
Indices: 7750308--7750363 Score: 50
Period size: 13 Copynumber: 4.9 Consensus size: 12
7750298 ATTTTTTTAA
7750308 TTTTAAATATTAT
1 TTTTAAATATT-T
7750321 TTTTAAATTATTT
1 TTTTAAA-TATTT
7750334 TTTTAAA-A---
1 TTTTAAATATTT
*
7750342 ATTTAAATA-TT
1 TTTTAAATATTT
7750353 TTTTAAATATT
1 TTTTAAATATT
7750364 AAATATATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 11
0.73 0.04 0.22
Matches are distributed among these distances:
8 6 0.17
9 1 0.03
11 9 0.25
12 1 0.03
13 15 0.42
14 4 0.11
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (12 bp):
TTTTAAATATTT
Found at i:7750363 original size:212 final size:210
Alignment explanation
Indices: 7750024--7750457 Score: 659
Period size: 213 Copynumber: 2.1 Consensus size: 210
7750014 AAAAAACTTA
*
7750024 AAATGTATATTTGAAATGTTTTATATATATATTTTAAATTTTGAATATATATTTCAGAAATTATT
1 AAATGTATATTTGAAATGTTTTATATATATATTTTAAATTTTAAATATATATTTCAGAAATTATT
*
7750089 TTTCTAAATTTTAAATATTTTTAAATTATTTTTAAAGATTTTAAAGATTATTTTTTAAATATTAA
66 TTTCTAAATTTTAAATATTTTTAAATTATTTTTAAAGAATTTAAAGATTATTTTTTAAATATTAA
*
7750154 ATATA-TTTTTAATAATATAAAACA-TTAAATATTTTAAAGATATGAGCTTTCAAATTTATTATT
131 ATATATTTTTTAATAATATAAAACATTTAAATA-TTTAAAGATATGAACTTTCAAATTTATTATT
7750217 AGTTTTATAATATTTC
195 AGTTTTATAATATTTC
*
7750233 AAATGTATATTTGAAATGTTTTATAATATATATTTTTTAAATTTTAAATATATATTTTTA-AAAT
1 AAATGTATATTTGAAATGTTTTAT-ATATATA--TTTTAAATTTTAAATATATA-TTTCAGAAAT
*
7750297 TATTTTT-TTAATTTTAAATATTATTTTTAAATTATTTTTTTAAA-AATTT-AA-A-TATTTTTT
62 TATTTTTCTAAATTTT-AA-A-TATTTTTAAATTA--TTTTTAAAGAATTTAAAGATTATTTTTT
*
7750357 AAATATTAAATATATTTTTTAATAATATAAAATATTTAAATATTTAAAGATATGAACTTTCAAAT
122 AAATATTAAATATATTTTTTAATAATATAAAACATTTAAATATTTAAAGATATGAACTTTCAAAT
*
7750422 TTATTATTAGTTTTATAATATTTT
187 TTATTATTAGTTTTATAATATTTC
7750446 AAATGTATATTT
1 AAATGTATATTT
7750458 TAATTTGATT
Statistics
Matches: 207, Mismatches: 7, Indels: 18
0.89 0.03 0.08
Matches are distributed among these distances:
209 24 0.12
210 7 0.03
211 7 0.03
212 54 0.26
213 81 0.39
214 22 0.11
215 4 0.02
216 8 0.04
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.53
Consensus pattern (210 bp):
AAATGTATATTTGAAATGTTTTATATATATATTTTAAATTTTAAATATATATTTCAGAAATTATT
TTTCTAAATTTTAAATATTTTTAAATTATTTTTAAAGAATTTAAAGATTATTTTTTAAATATTAA
ATATATTTTTTAATAATATAAAACATTTAAATATTTAAAGATATGAACTTTCAAATTTATTATTA
GTTTTATAATATTTC
Found at i:7750366 original size:39 final size:37
Alignment explanation
Indices: 7750323--7750409 Score: 95
Period size: 39 Copynumber: 2.3 Consensus size: 37
7750313 AATATTATTT
* *
7750323 TTAAAT-TATTTTTTTAAAAATTTAAATATTTTTTAAATA
1 TTAAATATA-TTTTTTAAAAATATAAA-A-TATTTAAATA
*
7750362 TTAAATATATTTTTTAATAATATAAAATATTTAAATA
1 TTAAATATATTTTTTAAAAATATAAAATATTTAAATA
*
7750399 TTTAAAGATAT
1 -TTAAATATAT
7750410 GAACTTTCAA
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
37 9 0.21
38 10 0.24
39 21 0.50
40 2 0.05
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (37 bp):
TTAAATATATTTTTTAAAAATATAAAATATTTAAATA
Found at i:7750391 original size:20 final size:19
Alignment explanation
Indices: 7750332--7750393 Score: 65
Period size: 20 Copynumber: 3.2 Consensus size: 19
7750322 TTTAAATTAT
*
7750332 TTTTTTAAAA-ATTTAAATA
1 TTTTTTAAAATA-TAAAATA
7750351 TTTTTT-AAATATTAAATATA
1 TTTTTTAAAATA-TAAA-ATA
7750371 TTTTTTAATAATATAAAATA
1 TTTTTTAA-AATATAAAATA
7750391 TTT
1 TTT
7750394 AAATATTTAA
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
18 3 0.08
19 11 0.29
20 15 0.39
21 5 0.13
22 4 0.11
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TTTTTTAAAATATAAAATA
Found at i:7750409 original size:18 final size:18
Alignment explanation
Indices: 7750335--7750409 Score: 55
Period size: 18 Copynumber: 4.1 Consensus size: 18
7750325 AAATTATTTT
* *
7750335 TTTAAAAATTTAAATATTT
1 TTTAAATATTTAAATA-TA
7750354 TTTAAATA-TTAAATATA
1 TTTAAATATTTAAATATA
* *
7750371 TTTTTTAATAATATAAA-ATA
1 --TTTAAAT-ATTTAAATATA
*
7750391 TTTAAATATTTAAAGATA
1 TTTAAATATTTAAATATA
7750409 T
1 T
7750410 GAACTTTCAA
Statistics
Matches: 45, Mismatches: 6, Indels: 11
0.73 0.10 0.18
Matches are distributed among these distances:
17 7 0.16
18 17 0.38
19 13 0.29
20 4 0.09
21 4 0.09
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (18 bp):
TTTAAATATTTAAATATA
Found at i:7750511 original size:13 final size:14
Alignment explanation
Indices: 7750495--7750523 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7750485 TGAATCTTAA
7750495 ATAA-TTTTAAATT
1 ATAATTTTTAAATT
7750508 ATAATTTTTAAATT
1 ATAATTTTTAAATT
7750522 AT
1 AT
7750524 TATAAAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.27
14 11 0.73
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
ATAATTTTTAAATT
Found at i:7750540 original size:20 final size:20
Alignment explanation
Indices: 7750515--7750553 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
7750505 ATTATAATTT
7750515 TTAAAT-TATTATAAAATAAA
1 TTAAATATATTA-AAAATAAA
7750535 TTAAATAATATTAAAAATA
1 TTAAAT-ATATTAAAAATA
7750554 TTAAAAACTA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 6 0.35
21 6 0.35
22 5 0.29
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
TTAAATATATTAAAAATAAA
Found at i:7750649 original size:24 final size:25
Alignment explanation
Indices: 7750617--7750671 Score: 103
Period size: 24 Copynumber: 2.2 Consensus size: 25
7750607 TTATATTATT
7750617 AATAATATATATTTAATATTT-AAA
1 AATAATATATATTTAATATTTAAAA
7750641 AATAATATATATTTAATATTTAAAA
1 AATAATATATATTTAATATTTAAAA
7750666 AATAAT
1 AATAAT
7750672 TTCAAATATA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 21 0.70
25 9 0.30
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (25 bp):
AATAATATATATTTAATATTTAAAA
Found at i:7750722 original size:23 final size:23
Alignment explanation
Indices: 7750696--7750740 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
7750686 TCAAAATTTT
*
7750696 TAAAATTAATAATAA-AAAATAAG
1 TAAAATAAATAA-AATAAAATAAG
7750719 TAAAATAAATAAAATAAAATAA
1 TAAAATAAATAAAATAAAATAA
7750741 AATAAAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 2 0.10
23 18 0.90
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (23 bp):
TAAAATAAATAAAATAAAATAAG
Found at i:7750725 original size:9 final size:9
Alignment explanation
Indices: 7750711--7750746 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
7750701 TTAATAATAA
*
7750711 AAAATAAGT
1 AAAATAAAT
7750720 AAAATAAAT
1 AAAATAAAT
7750729 AAAATAAAAT
1 AAAAT-AAAT
7750739 AAAATAAA
1 AAAATAAA
7750747 AATAAAAACA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
9 16 0.64
10 9 0.36
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (9 bp):
AAAATAAAT
Found at i:7750754 original size:6 final size:5
Alignment explanation
Indices: 7750696--7750753 Score: 57
Period size: 5 Copynumber: 11.0 Consensus size: 5
7750686 TCAAAATTTT
7750696 TAAAA TTAATAA TAAAA -AATAA GTAAAA T-AAA TAAAA TAAAA TAAAA
1 TAAAA -TAA-AA TAAAA TAA-AA -TAAAA TAAAA TAAAA TAAAA TAAAA
7750743 TAAAAA TAAAA
1 T-AAAA TAAAA
7750754 ACAAAAAAAG
Statistics
Matches: 46, Mismatches: 0, Indels: 13
0.78 0.00 0.22
Matches are distributed among these distances:
4 6 0.13
5 23 0.50
6 13 0.28
7 4 0.09
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (5 bp):
TAAAA
Found at i:7754836 original size:22 final size:22
Alignment explanation
Indices: 7754808--7754851 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
7754798 ATGCTGCAAA
*
7754808 ACCATGCAATTTTCAACAATTT
1 ACCATGCAATTGTCAACAATTT
7754830 ACCATGCAATTGTCAACAATTT
1 ACCATGCAATTGTCAACAATTT
7754852 CTACCATGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.34
Consensus pattern (22 bp):
ACCATGCAATTGTCAACAATTT
Found at i:7774361 original size:39 final size:39
Alignment explanation
Indices: 7774317--7774403 Score: 122
Period size: 39 Copynumber: 2.2 Consensus size: 39
7774307 GACTTAATGT
* *
7774317 CTAGCAGGTCTCGTGCCGGTGATAAATTC-AGGTTTATAC
1 CTAGCAGGCCTCGTGCCGATGATAAATTCGA-GTTTATAC
* *
7774356 CTAGCAGGCCTCGTGCCGATGTTAAGTTCGAGTTTATAC
1 CTAGCAGGCCTCGTGCCGATGATAAATTCGAGTTTATAC
7774395 CTAGCAGGC
1 CTAGCAGGC
7774404 AAATTGCCGG
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
39 42 0.98
40 1 0.02
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.29
Consensus pattern (39 bp):
CTAGCAGGCCTCGTGCCGATGATAAATTCGAGTTTATAC
Done.