Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 273 of 349
Found at i:91014717 original size:37 final size:37
Alignment explanation
Indices: 91014662--91014764 Score: 154
Period size: 37 Copynumber: 2.8 Consensus size: 37
91014652 GGAAATATAT
91014662 TTCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TTCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
91014699 TTCGCGTAAGACCTGATGACTACGTGTGGAGATTTTG
1 TTCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
91014736 -TCAGGGTAAGACCCGATAACTACGTGTGG
1 TTC-GGGTAAGACCCGATGACTACGTGTGG
91014765 GGACTATTCG
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
36 2 0.03
37 57 0.97
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.27
Consensus pattern (37 bp):
TTCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:91017180 original size:20 final size:20
Alignment explanation
Indices: 91017152--91017193 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
91017142 TACCAACTTG
*
91017152 CAACTTACCATAATCTTTCA
1 CAACATACCATAATCTTTCA
*
91017172 CAACATACCATAGTCTTTCA
1 CAACATACCATAATCTTTCA
91017192 CA
1 CA
91017194 GCTTAAACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.36, C:0.31, G:0.02, T:0.31
Consensus pattern (20 bp):
CAACATACCATAATCTTTCA
Found at i:91017389 original size:42 final size:42
Alignment explanation
Indices: 91017281--91017402 Score: 140
Period size: 43 Copynumber: 2.9 Consensus size: 42
91017271 TACCATACCA
* * * * *
91017281 ATGCCATATCCTAGATATGGTCTCACATG-GGATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAG-TCTCATATCG
* *
91017323 ATGCCAATAGCCCAGCTATGGTCTTACACGAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
91017366 ATGCCATATCCCAGATATGGTCTTACACGTAA-TCTCA
1 ATGCCATATCCCAGATATGGTCTTACACG-AAGTCTCA
91017403 ACTAACCCTA
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
42 32 0.47
43 35 0.51
44 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
Found at i:91022205 original size:17 final size:17
Alignment explanation
Indices: 91022183--91022219 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
91022173 AAGAATCCAT
*
91022183 CAAAACATAGACTTTGC
1 CAAAACATAGACTTCGC
91022200 CAAAACATAGACTTCGC
1 CAAAACATAGACTTCGC
91022217 CAA
1 CAA
91022220 TCAGCACATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.43, C:0.27, G:0.11, T:0.19
Consensus pattern (17 bp):
CAAAACATAGACTTCGC
Found at i:91027192 original size:26 final size:26
Alignment explanation
Indices: 91027157--91027207 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
91027147 AATGTGAAAG
*
91027157 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
91027183 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
91027208 GTTCATTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:91027341 original size:104 final size:103
Alignment explanation
Indices: 91027079--91027344 Score: 460
Period size: 103 Copynumber: 2.6 Consensus size: 103
91027069 TTGTATATAA
** * *
91027079 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAGATCCACCATATCTT
91027144 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
* *
91027182 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAGATCCACCATATCTT
91027247 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
*
91027286 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAGATCCACCA
91027345 ATAACGGTTA
Statistics
Matches: 153, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
103 92 0.60
104 61 0.40
ACGTcount: A:0.18, C:0.20, G:0.31, T:0.30
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
Found at i:91034722 original size:104 final size:103
Alignment explanation
Indices: 91034556--91034821 Score: 453
Period size: 104 Copynumber: 2.6 Consensus size: 103
91034546 TTGTATATAA
** *
91034556 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATGGTGGTGCTATGTGCG-TGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGTGGTGCTAAGTGCGAT-ATCCACCATATCTT
91034620 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
91034659 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCA-TGGTGGTGCTAAGTGCGATATCCACCATATCTT
91034724 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
91034763 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCA-TGGTGGTGCTAAGTGCGATATCCACCA
91034822 ATAACGGTTA
Statistics
Matches: 154, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
103 28 0.18
104 125 0.81
105 1 0.01
ACGTcount: A:0.18, C:0.21, G:0.31, T:0.30
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGTGGTGCTAAGTGCGATATCCACCATATCTTT
GAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:91039560 original size:43 final size:44
Alignment explanation
Indices: 91039480--91039563 Score: 107
Period size: 43 Copynumber: 1.9 Consensus size: 44
91039470 CCGAGGTGTG
* ** *
91039480 TTTTCGTGTAAGACCATGTCTGGGACATTGGCGTCGATATGAGA
1 TTTTCGTGGAAGACCATGTCTGGGACAGAGGCATCGATATGAGA
* *
91039524 TTTT-GTGGAAGACCCTGTCTGGGATAGAGGCATCGATATG
1 TTTTCGTGGAAGACCATGTCTGGGACAGAGGCATCGATATG
91039564 TGATAACATG
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
43 30 0.88
44 4 0.12
ACGTcount: A:0.23, C:0.15, G:0.31, T:0.31
Consensus pattern (44 bp):
TTTTCGTGGAAGACCATGTCTGGGACAGAGGCATCGATATGAGA
Found at i:91042458 original size:47 final size:44
Alignment explanation
Indices: 91042351--91042517 Score: 158
Period size: 47 Copynumber: 3.6 Consensus size: 44
91042341 TATGCATGCT
*
91042351 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTTAGCC
1 GATGCATGTCCCAGACACGTCTTACACTAGCACAACTCTTAGCC
* * *
91042395 GATGCATGTCCCAGACACGTCTTACACTGGC-TATCTCTGTCGAGGCC
1 GATGCATGTCCCAGACACGTCTTACACTAGCACAACTCT-T--A-GCC
* * *
91042442 GATGCATGTCCTAGACACGTCTTACTCTAGCACTCATCTCTGT-GCC
1 GATGCATGTCCCAGACACGTCTTACACTAGCA--CAACTCT-TAGCC
* *
91042488 GATGTCGTGTCCCAGACATGGTCTTACACT
1 GATG-CATGTCCCAGACA-CGTCTTACACT
91042518 GGCTCTCATA
Statistics
Matches: 102, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
43 5 0.05
44 30 0.29
46 8 0.08
47 42 0.41
48 9 0.09
50 8 0.08
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.28
Consensus pattern (44 bp):
GATGCATGTCCCAGACACGTCTTACACTAGCACAACTCTTAGCC
Found at i:91042545 original size:94 final size:90
Alignment explanation
Indices: 91042296--91042565 Score: 303
Period size: 94 Copynumber: 2.9 Consensus size: 90
91042286 ATGGGATGAA
* *
91042296 TTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATGCATGCTGATGCATGTC
1 TTGCCGATG-CATGTCCCAGACATGGTCTTACACTGGCTCTCATA-ATG-ATGCCGATGCATGTC
91042361 CCAGACATGTCTTACACTAGCACAACTC
63 CCAGACATGTCTTACACTAGCACAACTC
* * *
91042389 TTAGCCGATGCATGTCCCAGACA-CGTCTTACACTGGCTATCTC-T-GTCGAGGCCGATGCATGT
1 TT-GCCGATGCATGTCCCAGACATGGTCTTACACTGGC--TCTCATAAT-GATGCCGATGCATGT
* * * *
91042451 CCTAGACACGTCTTACTCTAGCACTCATCTC
62 CCCAGACATGTCTTACACTAGCA--CAACTC
* * * *
91042482 TGTGCCGATGTCGTGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTTGCCGAAGAATGTCC
1 T-TGCCGATG-CATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGATGCCGATGCATGTCC
91042547 CAGACATGTCTTACACTAG
64 CAGACATGTCTTACACTAG
91042566 TGCACAAATC
Statistics
Matches: 147, Mismatches: 19, Indels: 21
0.79 0.10 0.11
Matches are distributed among these distances:
91 33 0.22
92 13 0.09
93 33 0.22
94 54 0.37
95 14 0.10
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (90 bp):
TTGCCGATGCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGATGCCGATGCATGTCCCA
GACATGTCTTACACTAGCACAACTC
Found at i:91043532 original size:13 final size:13
Alignment explanation
Indices: 91043514--91043545 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
91043504 TGAAAACATT
91043514 AAAATTAACTCAC
1 AAAATTAACTCAC
91043527 AAAATTAACTCAC
1 AAAATTAACTCAC
91043540 AAAATT
1 AAAATT
91043546 TCTCATGCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.56, C:0.19, G:0.00, T:0.25
Consensus pattern (13 bp):
AAAATTAACTCAC
Found at i:91045206 original size:33 final size:33
Alignment explanation
Indices: 91045164--91045294 Score: 107
Period size: 33 Copynumber: 4.2 Consensus size: 33
91045154 TGCACATTTT
91045164 CTTTTCAAATGGTATACACAAAGTATACCTTTC
1 CTTTTCAAATGGTATACACAAAGTATACCTTTC
* *
91045197 CTTTTCAAATGG--TACACGAAGT-T---TGT-
1 CTTTTCAAATGGTATACACAAAGTATACCTTTC
* * * * * **
91045223 CGTTTCAAGT-GTACACACAAAGTGTACATAGC
1 CTTTTCAAATGGTATACACAAAGTATACCTTTC
**
91045255 CTTTTCATGTGGTATACACAAAGTATACCTTTC
1 CTTTTCAAATGGTATACACAAAGTATACCTTTC
91045288 CTTTTCA
1 CTTTTCA
91045295 CATTCGATAG
Statistics
Matches: 75, Mismatches: 15, Indels: 16
0.71 0.14 0.15
Matches are distributed among these distances:
25 1 0.01
26 8 0.11
27 10 0.13
28 1 0.01
30 1 0.01
31 10 0.13
32 8 0.11
33 36 0.48
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.36
Consensus pattern (33 bp):
CTTTTCAAATGGTATACACAAAGTATACCTTTC
Found at i:91046003 original size:20 final size:22
Alignment explanation
Indices: 91045963--91046003 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
91045953 TGTAAAAGTG
*
91045963 ATTTCTCTATCAATAACCTTTT
1 ATTTCTCTATCAATAAACTTTT
91045985 ATTT-TCTATC-ATAAACTTT
1 ATTTCTCTATCAATAAACTTT
91046004 AAATTTACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 8 0.44
21 6 0.33
22 4 0.22
ACGTcount: A:0.29, C:0.20, G:0.00, T:0.51
Consensus pattern (22 bp):
ATTTCTCTATCAATAAACTTTT
Found at i:91050623 original size:47 final size:45
Alignment explanation
Indices: 91050552--91050814 Score: 219
Period size: 47 Copynumber: 5.6 Consensus size: 45
91050542 GTAAGGTGTT
* *
91050552 GATGCCATGTCCTAGACATTGTCTTACACTGGCTCACATCTCAA-GTC
1 GATG-CATGTCCCAGACA-TGTCTTACACTGGCT-ACATCTCAATGCC
* *
91050599 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTC-GTAGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTA-CATCTCAAT-GCC
* * * *
91050647 GATGTATGTCCTAGACATGTCTTACACTGGCTTACGTCTCAAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-TACATCTCAATGCC
* * * * * * *
91050693 GATGCATTTCCCAGCCATGTCTTACACTAGCTCTCTTCTTAATGGC
1 GATGCATGTCCCAGACATGTCTTACACTGGCT-ACATCTCAATGCC
* *
91050739 AATGCCATGTCCCAGACATGGTCTTACACTGGCT-C-TCTTAATGTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTACATCTCAA--T-GCC
91050787 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
91050815 AACCAACAAT
Statistics
Matches: 178, Mismatches: 26, Indels: 25
0.78 0.11 0.11
Matches are distributed among these distances:
45 7 0.04
46 70 0.39
47 77 0.43
48 24 0.13
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTACATCTCAATGCC
Found at i:91064703 original size:46 final size:46
Alignment explanation
Indices: 91064636--91064808 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 46
91064626 AACCCGCCCC
* * *
91064636 TAAGTGAACTTGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
* * * * * *
91064682 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAG-TTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-TTCGCATCCA
* * * *
91064728 TTTCA-CGAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
91064775 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
91064809 TGCTCAACCA
Statistics
Matches: 100, Mismatches: 22, Indels: 10
0.76 0.17 0.08
Matches are distributed among these distances:
45 2 0.02
46 64 0.64
47 32 0.32
48 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCA
Found at i:91065266 original size:30 final size:30
Alignment explanation
Indices: 91065232--91065291 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
91065222 ATTTAATACG
91065232 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * * *
91065262 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
91065292 GGCTCGGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:91082561 original size:47 final size:49
Alignment explanation
Indices: 91082487--91082616 Score: 158
Period size: 47 Copynumber: 2.7 Consensus size: 49
91082477 GTATAATACC
* * *
91082487 GATGTCATGTCCCAAACATGGTCTTACACTGGCTCATC-CAT-TAAGT-T
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTC-TCACATGTAAGTCT
* **
91082534 GATGCCATGTCCGAGACATGGTCTTACACTGACTCTCACATGTCCGTGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACATGTAAGT-CT
*
91082584 GATGCCATGTCCCAGACGTGGTCTTACACTGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGAC
91082617 ACATTTTGTA
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
46 2 0.03
47 34 0.48
48 3 0.04
50 32 0.45
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.28
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCACATGTAAGTCT
Found at i:91082701 original size:45 final size:47
Alignment explanation
Indices: 91082485--91082759 Score: 158
Period size: 45 Copynumber: 5.9 Consensus size: 47
91082475 AGGTATAATA
* *
91082485 CCGATGTCATGTCCCAAACATGGTCTTACACTGGCTCATCCAT-T-AA-G
1 CCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTC-T-CATCTCAAGG
** * * * *
91082532 TTGATGCCATGTCCGAGACATGGTCTTACACTGACTCTCACATGTC-CGTG
1 CCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCT--CATCTCAAG-G
* * * * * **
91082582 CTGATGCCATGTCCCAGACGTGGTCTTACACT-G-ACACATTTTGTA-G
1 CCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTCA-TCTCAAGG
* * * * *
91082628 TCAATG-CATGTCTCAAACATGTCTTACACTGGCT-TACATCTCGAGG
1 CCGATGCCATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCAAGG
* * * *
91082674 GCGATG-CATGTCCTAGA-ATGTCTTACACTAGCTCTCATCTCAATG
1 CCGATGCCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCAAGG
91082719 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT
1 CCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTCAT
91082760 AACGTGGCCG
Statistics
Matches: 174, Mismatches: 39, Indels: 29
0.72 0.16 0.12
Matches are distributed among these distances:
44 10 0.06
45 43 0.25
46 33 0.19
47 38 0.22
48 20 0.11
50 30 0.17
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (47 bp):
CCGATGCCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCAAGG
Found at i:91093752 original size:33 final size:34
Alignment explanation
Indices: 91093674--91093765 Score: 98
Period size: 34 Copynumber: 2.7 Consensus size: 34
91093664 GTTTTGGTTA
*
91093674 GGGCCTTAGCCCATTTCAGAATCAGAAACAGTGT
1 GGGCCTAAGCCCATTTCAGAATCAGAAACAGTGT
* * * *
91093708 GGGCCTGAGCCCATTTCAGTAA-CCGTATCAGTG-
1 GGGCCTAAGCCCATTTCAG-AATCAGAAACAGTGT
* *
91093741 GGGCCTAAGCCCATTACAAAATCAG
1 GGGCCTAAGCCCATTTCAGAATCAG
91093766 TACAGTATGC
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
32 2 0.04
33 18 0.38
34 26 0.54
35 2 0.04
ACGTcount: A:0.28, C:0.26, G:0.24, T:0.22
Consensus pattern (34 bp):
GGGCCTAAGCCCATTTCAGAATCAGAAACAGTGT
Found at i:91094363 original size:12 final size:12
Alignment explanation
Indices: 91094346--91094373 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
91094336 CGGCCTAACA
91094346 CATGAAATCGCC
1 CATGAAATCGCC
91094358 CATGAAATCGCC
1 CATGAAATCGCC
91094370 CATG
1 CATG
91094374 GTGGCCTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.32, C:0.32, G:0.18, T:0.18
Consensus pattern (12 bp):
CATGAAATCGCC
Found at i:91106559 original size:40 final size:40
Alignment explanation
Indices: 91106461--91106723 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
91106451 TCCTCGTTCA
* * * * *
91106461 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
91106500 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
91106540 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
91106580 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
91106620 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
91106660 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
91106700 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
91106724 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:91114086 original size:40 final size:40
Alignment explanation
Indices: 91113988--91114250 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
91113978 TCCTCGTTCA
* * * * *
91113988 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
91114027 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
91114067 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
91114107 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
91114147 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
91114187 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
91114227 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
91114251 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:91118065 original size:47 final size:47
Alignment explanation
Indices: 91117995--91118166 Score: 138
Period size: 47 Copynumber: 3.7 Consensus size: 47
91117985 GTATAATGTC
* ** *
91117995 GATGCCATGTACCAGACGCGGTCTTACACTGGCTCATCCATTAAGTT
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCATCCATTAAGTT
* **
91118042 GATGCCATGTCCCAGACATGGTCTTACCCTGACTC-TCACATGTCCGTACT
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCATC-CAT-TAAGT--T
* * * * * **
91118092 GATGCCATGTCCTAGACGTGGTCCTACACTGACACAT-C-TTGTAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCATCCATT-AAGTT
91118138 GATG-CATGTCCCAGACAT-GTCTTACACTG
1 GATGCCATGTCCCAGACATGGTCTTACACTG
91118167 GCTTACATCT
Statistics
Matches: 100, Mismatches: 19, Indels: 15
0.75 0.14 0.11
Matches are distributed among these distances:
44 10 0.10
45 12 0.12
46 6 0.06
47 34 0.34
48 5 0.05
49 1 0.01
50 31 0.31
51 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.27
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACTCATCCATTAAGTT
Found at i:91118175 original size:46 final size:49
Alignment explanation
Indices: 91118042--91118305 Score: 164
Period size: 46 Copynumber: 5.6 Consensus size: 49
91118032 CCATTAAGTT
* * * *
91118042 GATGCCATGTCCCAGACATGGTCTTACCCTGACTCTCACATGTCCGTA-CT
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCT-ACATCT-TGTAGCC
* * *
91118092 GATGCCATGTCCTAGACGTGGTCCTACACTGA--C-ACATCTTGTAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCTACATCTTGTAGCC
* *
91118138 GATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACATCTCG-AGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCTACATCTTGTA-GCC
* * * **
91118184 GATG-CATGTCCTAGACAT-GTATTACACT-AGCTCT-CGTC-TCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGA-CTCTACATCTTGTA-GCC
* * * ** *
91118230 AATGCCATGTCCCAGACATGGTCTTACACCGCCTCT-CATAATGTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCTACATCTTGTAGCC
* * *
91118278 GATG-CATATTCCAGACAT-TTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
91118306 AGCACACAAA
Statistics
Matches: 168, Mismatches: 34, Indels: 28
0.73 0.15 0.12
Matches are distributed among these distances:
44 10 0.06
45 16 0.10
46 66 0.39
47 26 0.15
48 21 0.12
49 1 0.01
50 28 0.17
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.28
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACTCTACATCTTGTAGCC
Found at i:91126819 original size:48 final size:47
Alignment explanation
Indices: 91126708--91127018 Score: 188
Period size: 48 Copynumber: 6.6 Consensus size: 47
91126698 TATGTGTGCT
* * * *
91126708 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-A-TTGTGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAT-AAAGCC
* * *
91126754 AGGGTAAGAAATGTCTAGGACATGCATCGGCCTCGAGATATACAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATA-AAGCC
* * * * ** ** * *
91126802 AGTGTAAGACATTTCTAGGACATGCATTGGCATTAAGA-CGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAAAGCC
* * *
91126848 AGTGTAAAACATGTCTGGGACAAGCATCGGCCTCGAGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATA-AAGCC
* * * * * *
91126896 AGTGTAAGACCTGTCTGGGACATGGCATCAG-CTTGTTG-TGT---GTC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCG-AGATATAAAGCC
* * * * *
91126940 AGTGTAAGACTTGTCTGGGACACGACATTGGCCTCGATATATGAAAGTC
1 AGTGTAAGACATGTCTGGGACATG-CATCGGCCTCGAGATAT-AAAGCC
* * *
91126989 AGTGCAAGACCTGTCTAGGACATGGCATCG
1 AGTGTAAGACATGTCTGGGACAT-GCATCG
91127019 ACTTTGATGT
Statistics
Matches: 199, Mismatches: 51, Indels: 27
0.72 0.18 0.10
Matches are distributed among these distances:
43 1 0.01
44 26 0.13
45 5 0.03
46 63 0.32
47 4 0.02
48 66 0.33
49 33 0.17
50 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAAAGCC
Found at i:91126862 original size:94 final size:94
Alignment explanation
Indices: 91126708--91126919 Score: 261
Period size: 94 Copynumber: 2.3 Consensus size: 94
91126698 TATGTGTGCT
* * *
91126708 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATT--G-TGAGAGCCAGGGTAAGAAATGTCT
1 AGTGTAAGACATGTCTAGGACATGCATTGG---CATTAAGACGAGAGCCAGGGTAAGAAATGTCT
*
91126770 AGGACATGCATCGGCCTCGAGATATACAAGCC
63 AGGACAAGCATCGGCCTCGAGATATACAAGCC
* * * *
91126802 AGTGTAAGACATTTCTAGGACATGCATTGGCATTAAGACGAGAGCTAGTGTAA-AACATGTCTGG
1 AGTGTAAGACATGTCTAGGACATGCATTGGCATTAAGACGAGAGCCAGGGTAAGAA-ATGTCTAG
*
91126866 GACAAGCATCGGCCTCGAGATATACAAGCT
65 GACAAGCATCGGCCTCGAGATATACAAGCC
* *
91126896 AGTGTAAGACCTGTCTGGGACATG
1 AGTGTAAGACATGTCTAGGACATG
91126920 GCATCAGCTT
Statistics
Matches: 102, Mismatches: 12, Indels: 8
0.84 0.10 0.07
Matches are distributed among these distances:
91 4 0.04
93 3 0.03
94 95 0.93
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.22
Consensus pattern (94 bp):
AGTGTAAGACATGTCTAGGACATGCATTGGCATTAAGACGAGAGCCAGGGTAAGAAATGTCTAGG
ACAAGCATCGGCCTCGAGATATACAAGCC
Found at i:91127003 original size:93 final size:95
Alignment explanation
Indices: 91126765--91127058 Score: 275
Period size: 94 Copynumber: 3.1 Consensus size: 95
91126755 GGGTAAGAAA
* * * * * *
91126765 TGTCTAGGACATGCATCGGCCTCGAGATATACAAGCCAGTGTAAGACATTTCTAGGACAT-GCAT
1 TGTCTGGGACAAGCATCGGCCTCGAGATATACAAGCTAGTGCAAGACCTGTCTAGGACATGGCAT
* * * * * * *
91126829 TGGCATTAAGACGAG--AGCTAGTGTAAAACA
66 CGAC-TT-TGATGTGCTAGCTAGTGTAAGACT
* *
91126859 TGTCTGGGACAAGCATCGGCCTCGAGATATACAAGCTAGTGTAAGACCTGTCTGGGACATGGCAT
1 TGTCTGGGACAAGCATCGGCCTCGAGATATACAAGCTAGTGCAAGACCTGTCTAGGACATGGCAT
*
91126924 C-AGC-TTGTTGTG-T-G-TCAGTGTAAGACT
66 CGA-CTTTGATGTGCTAGCT-AGTGTAAGACT
* * *
91126951 TGTCTGGGACACGACATTGGCCTCGATATATGA-AAG-TCAGTGCAAGACCTGTCTAGGACATGG
1 TGTCTGGGACAAG-CATCGGCCTCGAGATAT-ACAAGCT-AGTGCAAGACCTGTCTAGGACATGG
91127014 CATCGACTTTGATGTGCTAGCTAGTGTAAGACT
63 CATCGACTTTGATGTGCTAGCTAGTGTAAGACT
91127047 ATGTCTGGGACA
1 -TGTCTGGGACA
91127059 TGGCGTCGGC
Statistics
Matches: 167, Mismatches: 20, Indels: 23
0.80 0.10 0.11
Matches are distributed among these distances:
91 1 0.01
92 26 0.16
93 47 0.28
94 63 0.38
95 6 0.04
96 12 0.07
97 12 0.07
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (95 bp):
TGTCTGGGACAAGCATCGGCCTCGAGATATACAAGCTAGTGCAAGACCTGTCTAGGACATGGCAT
CGACTTTGATGTGCTAGCTAGTGTAAGACT
Found at i:91129503 original size:37 final size:37
Alignment explanation
Indices: 91129462--91129548 Score: 120
Period size: 37 Copynumber: 2.4 Consensus size: 37
91129452 GTAGTTAGCG
*
91129462 GGTCTCACCTGGACAAAATCTCCACACGTAGTCATCA
1 GGTCTCACCCGGACAAAATCTCCACACGTAGTCATCA
* * * *
91129499 GGTCTTACCCGGACATAATCTCCACACGTAGTTATCG
1 GGTCTCACCCGGACAAAATCTCCACACGTAGTCATCA
*
91129536 GGTCTTACCCGGA
1 GGTCTCACCCGGA
91129549 ATATATTTCC
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (37 bp):
GGTCTCACCCGGACAAAATCTCCACACGTAGTCATCA
Found at i:91129747 original size:48 final size:48
Alignment explanation
Indices: 91129689--91129932 Score: 382
Period size: 48 Copynumber: 5.0 Consensus size: 48
91129679 ATATACACAC
* * *
91129689 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
91129737 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
91129785 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
91129833 ATCTCATATATATTTCAC-CTTAGCCATACGGCTTTACCACATATATATAT
1 ATCTCATACATATTTCACAC-TAGCCATTCGGCTTTACCAC--ATATACAT
*
91129883 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
91129931 AT
1 AT
91129933 TTGTCTTGTA
Statistics
Matches: 182, Mismatches: 10, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
47 1 0.01
48 137 0.75
50 43 0.24
51 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:91132457 original size:14 final size:14
Alignment explanation
Indices: 91132438--91132473 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
91132428 TCCGACTAGG
91132438 GTCACATTAGGGGT
1 GTCACATTAGGGGT
*
91132452 GTCACATAAGGGGT
1 GTCACATTAGGGGT
*
91132466 GTTACATT
1 GTCACATT
91132474 TAGTGGTATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.25, C:0.14, G:0.31, T:0.31
Consensus pattern (14 bp):
GTCACATTAGGGGT
Found at i:91138220 original size:20 final size:21
Alignment explanation
Indices: 91138197--91138237 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
91138187 ATAAGCATGT
91138197 ATTTTG-ATGTTTGATAATAG
1 ATTTTGAATGTTTGATAATAG
*
91138217 ATTTTGAATGTTTGATGATAG
1 ATTTTGAATGTTTGATAATAG
91138238 TTATACAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.29, C:0.00, G:0.22, T:0.49
Consensus pattern (21 bp):
ATTTTGAATGTTTGATAATAG
Found at i:91138903 original size:48 final size:48
Alignment explanation
Indices: 91138802--91138909 Score: 125
Period size: 48 Copynumber: 2.3 Consensus size: 48
91138792 CGAGACCGAG
* * *
91138802 ATAGCTTCGGC--TATATATGTATTGGCACTTAGTGTGCATGATTGAA
1 ATAGCTTCGGCTATATATATATATTGGCACATAGTGTGCATGATAGAA
* *
91138848 ATGGCTTCGGCTATATATATATATTGGCACATAGTGTG-A-GAAATAGAT
1 ATAGCTTCGGCTATATATATATATTGGCACATAGTGTGCATG--ATAGAA
91138896 ATAGCTTCGGCTAT
1 ATAGCTTCGGCTAT
91138910 TTATTTGGCA
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
46 11 0.21
47 1 0.02
48 40 0.77
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35
Consensus pattern (48 bp):
ATAGCTTCGGCTATATATATATATTGGCACATAGTGTGCATGATAGAA
Found at i:91142306 original size:29 final size:29
Alignment explanation
Indices: 91142237--91142306 Score: 113
Period size: 29 Copynumber: 2.4 Consensus size: 29
91142227 TCATGTCTCG
* **
91142237 AAGCCAAATCAACCAACATTCATGGCCTG
1 AAGCCAAATCAGCCAACATTCATGGCCCA
91142266 AAGCCAAATCAGCCAACATTCATGGCCCA
1 AAGCCAAATCAGCCAACATTCATGGCCCA
91142295 AAGCCAAATCAG
1 AAGCCAAATCAG
91142307 TATAACTTGC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.40, C:0.31, G:0.14, T:0.14
Consensus pattern (29 bp):
AAGCCAAATCAGCCAACATTCATGGCCCA
Found at i:91152646 original size:11 final size:9
Alignment explanation
Indices: 91152616--91152649 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
91152606 TCTCTCTAAA
*
91152616 CTCTCAACT
1 CTCTCAATT
91152625 CTCTCAATT
1 CTCTCAATT
91152634 CTCTCAATT
1 CTCTCAATT
*
91152643 TTCTCAA
1 CTCTCAA
91152650 GTTTTGTTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.24, C:0.35, G:0.00, T:0.41
Consensus pattern (9 bp):
CTCTCAATT
Found at i:91161134 original size:4 final size:4
Alignment explanation
Indices: 91161125--91161170 Score: 92
Period size: 4 Copynumber: 11.5 Consensus size: 4
91161115 ATAGAAACAC
91161125 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GA
91161171 GACGAAGTGC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 42 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:91167374 original size:56 final size:56
Alignment explanation
Indices: 91167312--91167443 Score: 210
Period size: 56 Copynumber: 2.4 Consensus size: 56
91167302 ACCATGTCAT
* *
91167312 CGATATATATGTGCAAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
1 CGATATATATGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTC
* **
91167368 CGATATATGTGTATGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTC
1 CGATATATATGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTC
*
91167424 CGTTATATATGTGCGAGTAA
1 CGATATATATGTGCGAGTAA
91167444 AACCCTGTCT
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 67 1.00
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.33
Consensus pattern (56 bp):
CGATATATATGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTC
Found at i:91167465 original size:56 final size:56
Alignment explanation
Indices: 91167312--91167474 Score: 159
Period size: 56 Copynumber: 2.9 Consensus size: 56
91167302 ACCATGTCAT
* * * * *
91167312 CGATATATATGTGCAAGTAAGACCACGTTTAATAC-GTTGGCATCGATATGTGATTC
1 CGATATATATGTACGAGTAAAACCACGTCTAAGACAG-TGGCATCGATATGTGATTC
* * * * * *
91167368 CGATATATGTGTATGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTC
1 CGATATATATGTACGAGTAAAACCACGTCTAAGACAGTGGCATCGATATGTGATTC
* * **
91167424 CGTTATATATGTGCGAGTAAAACC-CTGTCTGGGACAGTGGCATCGATATGT
1 CGATATATATGTACGAGTAAAACCAC-GTCTAAGACAGTGGCATCGATATGT
91167475 AATTACATGT
Statistics
Matches: 90, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
55 1 0.01
56 89 0.99
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (56 bp):
CGATATATATGTACGAGTAAAACCACGTCTAAGACAGTGGCATCGATATGTGATTC
Found at i:91168519 original size:16 final size:17
Alignment explanation
Indices: 91168488--91168522 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
91168478 AGCTATAAGA
*
91168488 TGAATTTGCTTTATTTG
1 TGAATTTGCGTTATTTG
91168505 TGAATTTG-GTTATTTG
1 TGAATTTGCGTTATTTG
91168521 TG
1 TG
91168523 TGTGTTTGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.17, C:0.03, G:0.23, T:0.57
Consensus pattern (17 bp):
TGAATTTGCGTTATTTG
Found at i:91179068 original size:48 final size:48
Alignment explanation
Indices: 91179009--91179160 Score: 202
Period size: 48 Copynumber: 3.2 Consensus size: 48
91178999 TAATATGTGT
*
91179009 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTTGAGAGATACAA
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGACCTTGAGAGATACAA
* * *
91179057 GCCAGTGTAAGACATGTTTGGGACATGCATCGACATTGAGACG--A-GA
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGACCTTGAGA-GATACAA
** * *
91179103 GCTAGTGTAAGACATGTCCGGGACATACATCGACCTTGAGATATACAA
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGACCTTGAGAGATACAA
91179151 GCTAGTGTAA
1 GCTAGTGTAA
91179161 AACCTGTCTA
Statistics
Matches: 89, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
46 37 0.42
47 2 0.02
48 49 0.55
49 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.28, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTTTGGGACATGCATCGACCTTGAGAGATACAA
Found at i:91179175 original size:48 final size:47
Alignment explanation
Indices: 91179009--91179177 Score: 196
Period size: 48 Copynumber: 3.6 Consensus size: 47
91178999 TAATATGTGT
* *
91179009 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTTGAGAGATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTTGAGA-ATACAA
* * * ** *
91179057 GCCAGTGTAAGACATGTTTGGGACATGCATCGACATTGAGACGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTTGAGAATACAA
* *
91179103 GCTAGTGTAAGACATGTCCGGGACATACATCGACCTTGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTTGAGA-ATACAA
* * *
91179151 GCTAGTGTAAAACCTGTCTAGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
91179178 GCGTTAGCTT
Statistics
Matches: 100, Mismatches: 19, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
46 37 0.37
47 2 0.02
48 61 0.61
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTTGAGAATACAA
Found at i:91188951 original size:29 final size:29
Alignment explanation
Indices: 91188918--91188976 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 29
91188908 TGTACCTTGA
* *
91188918 CACG-AATTTTCAATAAACAAGTTCTTCAC
1 CACGAAATTTT-AAGAAACAAGTTCTCCAC
91188947 CACGAAATTTTAAGAAACAAGTTCTCCAC
1 CACGAAATTTTAAGAAACAAGTTCTCCAC
91188976 C
1 C
91188977 TCTTCCACGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 21 0.78
30 6 0.22
ACGTcount: A:0.39, C:0.25, G:0.08, T:0.27
Consensus pattern (29 bp):
CACGAAATTTTAAGAAACAAGTTCTCCAC
Found at i:91190696 original size:19 final size:20
Alignment explanation
Indices: 91190672--91190711 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
91190662 ATGATCATGT
91190672 CAATGTACATTTTGT-AAAA
1 CAATGTACATTTTGTGAAAA
*
91190691 CAATGTAGATTTTGTGAAAA
1 CAATGTACATTTTGTGAAAA
91190711 C
1 C
91190712 GGTCCTTGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (20 bp):
CAATGTACATTTTGTGAAAA
Found at i:91195853 original size:55 final size:55
Alignment explanation
Indices: 91195794--91195923 Score: 129
Period size: 55 Copynumber: 2.4 Consensus size: 55
91195784 CCCATGTTTA
* * *
91195794 TTTAACAGGTTCGACCACGGGTGTTCCACACGGGTGTGTCG-A-ACGCCTGTGTTGT
1 TTTAACAGGTTCGACCACGGGTCTTCCACACGAGCGTGTCGCATAC-CC-GTGTTGT
* * * * *
91195849 TTTAACAAGTTCGCCCATGGTTCTTCCACACGAGCGTGTCGCATACTCGTGTTGT
1 TTTAACAGGTTCGACCACGGGTCTTCCACACGAGCGTGTCGCATACCCGTGTTGT
** *
91195904 TTTGGCAGGCTCGACCACGG
1 TTTAACAGGTTCGACCACGG
91195924 CTATATCGCA
Statistics
Matches: 59, Mismatches: 14, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
55 55 0.93
56 2 0.03
57 2 0.03
ACGTcount: A:0.17, C:0.26, G:0.28, T:0.29
Consensus pattern (55 bp):
TTTAACAGGTTCGACCACGGGTCTTCCACACGAGCGTGTCGCATACCCGTGTTGT
Found at i:91215614 original size:20 final size:20
Alignment explanation
Indices: 91215589--91215627 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
91215579 TATTAAAAAT
91215589 TCATGCAAAATGCCTTACCA
1 TCATGCAAAATGCCTTACCA
91215609 TCATGCAAAATGCCTTACC
1 TCATGCAAAATGCCTTACC
91215628 TCTTTTAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.31, G:0.10, T:0.26
Consensus pattern (20 bp):
TCATGCAAAATGCCTTACCA
Found at i:91228760 original size:340 final size:340
Alignment explanation
Indices: 91228137--91228817 Score: 1182
Period size: 340 Copynumber: 2.0 Consensus size: 340
91228127 GCCACTATGA
* *
91228137 GCGATTTTATGGGCTTAGACCGTTTTGGGCCATGTTGTGCTGGAATGGGCCGTGTAGGCCCACGG
1 GCGATTTTATGGGCTTAGACCGTTTTAGGCCATGTTGGGCTGGAATGGGCCGTGTAGGCCCACGG
* *
91228202 GCTTGTGAGCCCCACATGGGTAAACCACACGAACATGTGGAGAATATTGGGCTAGGCTATGTAGT
66 GCTTGTGAGCCCCACATGGGTAAACCACACGAACATGTGGAGAATATTAGGCCAGGCTATGTAGT
* * **
91228267 CCACACGACCAAGGCCAAATTTGGGCTTGTGGGCCTCACGGGCATGTGGGCCCATATTGGTTCGC
131 CCACACGACCAAGGCCAAATTTGGGCTTGTGGGCCACACGGGCATGTGGGCCCACATTGGACCGC
*
91228332 ATTATGGGCCTTAGGCCCATTTTCACTGTTTGATTGATAAGGTTGCACGGGTCGTCTAAGACGAC
196 ATTATGGGCCTTAGGCCCATTTTCACTATTTGATTGATAAGGTTGCACGGGTCGTCTAAGACGAC
91228397 TGTACACCTACTGTTGGGTCGGTAAGTATGCGTAGACCCCAAATTAATAAAATGACTGTTTTGCC
261 TGTACACCTACTGTTGGGTCGGTAAGTATGCGTAGACCCCAAATTAATAAAATGACTGTTTTGCC
*
91228462 TTTATGTGATAAAAT
326 CTTATGTGATAAAAT
* *
91228477 GCGATTTTATGGGCTTAGACCGTTTTAGGCTATGTTGGGCTGGAATGGGCCGTGTGGGCCCACGG
1 GCGATTTTATGGGCTTAGACCGTTTTAGGCCATGTTGGGCTGGAATGGGCCGTGTAGGCCCACGG
* *
91228542 GCTTGTGGGCCCCACATGGGTAAACCACACGAACATGTGGAGAATATTAGGCCAGGCTATGTATT
66 GCTTGTGAGCCCCACATGGGTAAACCACACGAACATGTGGAGAATATTAGGCCAGGCTATGTAGT
*
91228607 CCACACGACCAAGGCCAAATTTGGGCTTGTGGGCCACACGGGCATGTGGGCCCACATTGGACCGT
131 CCACACGACCAAGGCCAAATTTGGGCTTGTGGGCCACACGGGCATGTGGGCCCACATTGGACCGC
* *
91228672 ATTATGGGCCTTAGGCCCATTTTCACTATTTGATTGATAAGGTTGCACGGGTCGTCTGAGATGAC
196 ATTATGGGCCTTAGGCCCATTTTCACTATTTGATTGATAAGGTTGCACGGGTCGTCTAAGACGAC
* *
91228737 TGTAGACCTACTGTTGTGTCGGTAAGTATGCGTAGACCCCAAATTAATAAAATGACTGTTTTGCC
261 TGTACACCTACTGTTGGGTCGGTAAGTATGCGTAGACCCCAAATTAATAAAATGACTGTTTTGCC
*
91228802 CTTATGTGGTAAAAT
326 CTTATGTGATAAAAT
91228817 G
1 G
91228818 ACTGTTTTGC
Statistics
Matches: 321, Mismatches: 20, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
340 321 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (340 bp):
GCGATTTTATGGGCTTAGACCGTTTTAGGCCATGTTGGGCTGGAATGGGCCGTGTAGGCCCACGG
GCTTGTGAGCCCCACATGGGTAAACCACACGAACATGTGGAGAATATTAGGCCAGGCTATGTAGT
CCACACGACCAAGGCCAAATTTGGGCTTGTGGGCCACACGGGCATGTGGGCCCACATTGGACCGC
ATTATGGGCCTTAGGCCCATTTTCACTATTTGATTGATAAGGTTGCACGGGTCGTCTAAGACGAC
TGTACACCTACTGTTGGGTCGGTAAGTATGCGTAGACCCCAAATTAATAAAATGACTGTTTTGCC
CTTATGTGATAAAAT
Found at i:91228822 original size:27 final size:27
Alignment explanation
Indices: 91228784--91228991 Score: 308
Period size: 27 Copynumber: 7.7 Consensus size: 27
91228774 CCCAAATTAA
91228784 TAAAATGACTGTTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
91228811 TAAAATGACTGTTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
91228838 TAAAATGACTGTTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
*
91228865 TAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * *
91228892 TAAAATGACTATTTTTCCCTTATGGGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* *
91228919 TAAAATGACTATTTTGCTCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * *
91228946 TAAAATGATTGTTTTACCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * *
91228973 TAAGATAATTGTTTTGCCC
1 TAAAATGACTGTTTTGCCC
91228992 CTATATGTTG
Statistics
Matches: 167, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 167 1.00
ACGTcount: A:0.25, C:0.14, G:0.20, T:0.41
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATGTGG
Found at i:91234951 original size:25 final size:25
Alignment explanation
Indices: 91234898--91234952 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
91234888 GGACTCGGCA
* * * *
91234898 CAGCTCGTATGAGCTTACCGATTTG
1 CAGCTCGTAAGAGCTTAACGATATC
*
91234923 CAGCTCGTAAGAGCTTAATGATATC
1 CAGCTCGTAAGAGCTTAACGATATC
91234948 CAGCT
1 CAGCT
91234953 TGGTGGAGCT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (25 bp):
CAGCTCGTAAGAGCTTAACGATATC
Found at i:91236480 original size:37 final size:37
Alignment explanation
Indices: 91236425--91236498 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
91236415 TGAATTATGG
91236425 ATCTATTTGAGCAATGTGAATAATAAATAAGTTAAAT
1 ATCTATTTGAGCAATGTGAATAATAAATAAGTTAAAT
*
91236462 ATCTGTTTGAGCAATGTGAATAATAAATAAGTTAAAT
1 ATCTATTTGAGCAATGTGAATAATAAATAAGTTAAAT
91236499 TTGGCATTAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.45, C:0.05, G:0.15, T:0.35
Consensus pattern (37 bp):
ATCTATTTGAGCAATGTGAATAATAAATAAGTTAAAT
Found at i:91239384 original size:31 final size:30
Alignment explanation
Indices: 91239346--91239412 Score: 98
Period size: 31 Copynumber: 2.2 Consensus size: 30
91239336 ACAGTTAGTG
*
91239346 AATATGAGAGAGAATTCATCAGACTTAGCAA
1 AATATGAGAGAGAATTCATCAGACTCAGC-A
**
91239377 AATATGAGAGAGAATTTGTCAGACTCAGCA
1 AATATGAGAGAGAATTCATCAGACTCAGCA
91239407 AATATG
1 AATATG
91239413 CTCGGGAGTA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
30 7 0.21
31 26 0.79
ACGTcount: A:0.43, C:0.12, G:0.21, T:0.24
Consensus pattern (30 bp):
AATATGAGAGAGAATTCATCAGACTCAGCA
Found at i:91240201 original size:45 final size:45
Alignment explanation
Indices: 91240132--91240221 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
91240122 CCCTGGCTCC
*
91240132 GCTCTTTCGTATGTGTGTATGAAATTGACATCTAATATGAATATA
1 GCTCATTCGTATGTGTGTATGAAATTGACATCTAATATGAATATA
91240177 GCTCATTCGTATGTGTGTATGAAATTGACATCTAATATGAATATA
1 GCTCATTCGTATGTGTGTATGAAATTGACATCTAATATGAATATA
91240222 CCTGTCGAGT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (45 bp):
GCTCATTCGTATGTGTGTATGAAATTGACATCTAATATGAATATA
Found at i:91250016 original size:54 final size:54
Alignment explanation
Indices: 91249842--91250025 Score: 237
Period size: 55 Copynumber: 3.4 Consensus size: 54
91249832 CATGTCTTAA
* * *
91249842 CATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAATGCCATGCCTTGG
1 CATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGCCATGCCTTGG
** * * * *
91249895 CATGGTCTTACATGGGA-CCTTTTCCTTATAGTAACTCATTAATGCCATGTCTTGA
1 CATGGTCTTACATGATATCC-TTGCCTTATAG-AACTCATCAATGCCATGCCTTGG
* *
91249950 CATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGG
1 CATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGCCATGCCTTGG
91250004 CATGGTCTTACATGATATCCTT
1 CATGGTCTTACATGATATCCTT
91250026 ATCTTACCAA
Statistics
Matches: 111, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
52 2 0.02
53 23 0.21
54 41 0.37
55 43 0.39
56 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.36
Consensus pattern (54 bp):
CATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATGCCATGCCTTGG
Found at i:91250167 original size:47 final size:45
Alignment explanation
Indices: 91250101--91250202 Score: 107
Period size: 45 Copynumber: 2.2 Consensus size: 45
91250091 CATCTTGATG
* * *
91250101 TGGTCTTACATGGAGTCCTTGATCAATGCCAATGCCTTGTCGTGACA
1 TGGTCTTACAGGGAGTCCTTG--CAATACCAATGCCATGTCGTGACA
** *
91250148 TGGTCTTACACGGGA-TCCTTGCCTTACCAATGCCATGTCTTGACA
1 TGGTCTTACA-GGGAGTCCTTGCAATACCAATGCCATGTCGTGACA
*
91250193 TTGTCTTACA
1 TGGTCTTACA
91250203 TAGTATCCTT
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
45 28 0.60
47 16 0.34
48 3 0.06
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (45 bp):
TGGTCTTACAGGGAGTCCTTGCAATACCAATGCCATGTCGTGACA
Found at i:91253876 original size:21 final size:20
Alignment explanation
Indices: 91253852--91253891 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
91253842 CTGTGTTGAT
91253852 TTCGTATATTGGCCCATTTTC
1 TTCGT-TATTGGCCCATTTTC
* *
91253873 TTCGTTTTTGGCCCGTTTT
1 TTCGTTATTGGCCCATTTT
91253892 TCATTCCTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.07, C:0.23, G:0.17, T:0.53
Consensus pattern (20 bp):
TTCGTTATTGGCCCATTTTC
Found at i:91261607 original size:14 final size:13
Alignment explanation
Indices: 91261582--91261655 Score: 58
Period size: 14 Copynumber: 5.4 Consensus size: 13
91261572 GGGATATCAA
*
91261582 AACAAGAATTAAG
1 AACAATAATTAAG
91261595 AACACATAATTAAG
1 AACA-ATAATTAAG
* **
91261609 AACAAGTTAAATATT
1 AACAA--TAATTAAG
* *
91261624 TACAAGAATTAAG
1 AACAATAATTAAG
91261637 AACACATAATTAAG
1 AACA-ATAATTAAG
91261651 AACAA
1 AACAA
91261656 GTTAAATATT
Statistics
Matches: 46, Mismatches: 11, Indels: 8
0.71 0.17 0.12
Matches are distributed among these distances:
13 13 0.28
14 24 0.52
15 9 0.20
ACGTcount: A:0.58, C:0.11, G:0.09, T:0.22
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:91261642 original size:42 final size:42
Alignment explanation
Indices: 91261583--91261667 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
91261573 GGATATCAAA
91261583 ACAAGAATTAAGAACACATAATTAAGAACAAGTTAAATATTT
1 ACAAGAATTAAGAACACATAATTAAGAACAAGTTAAATATTT
91261625 ACAAGAATTAAGAACACATAATTAAGAACAAGTTAAATATTT
1 ACAAGAATTAAGAACACATAATTAAGAACAAGTTAAATATTT
91261667 A
1 A
91261668 TCATACAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.55, C:0.09, G:0.09, T:0.26
Consensus pattern (42 bp):
ACAAGAATTAAGAACACATAATTAAGAACAAGTTAAATATTT
Found at i:91261651 original size:21 final size:21
Alignment explanation
Indices: 91261585--91261652 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
91261575 ATATCAAAAC
91261585 AAGAATTAAGAACACATAATT
1 AAGAATTAAGAACACATAATT
* * *
91261606 AAGAA-CAAGTTA-A-ATATTT
1 AAGAATTAAG-AACACATAATT
91261625 ACAAGAATTAAGAACACATAATT
1 --AAGAATTAAGAACACATAATT
91261648 AAGAA
1 AAGAA
91261653 CAAGTTAAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 12
0.66 0.11 0.23
Matches are distributed among these distances:
19 5 0.14
20 4 0.11
21 17 0.49
22 4 0.11
23 5 0.14
ACGTcount: A:0.57, C:0.09, G:0.10, T:0.24
Consensus pattern (21 bp):
AAGAATTAAGAACACATAATT
Found at i:91261688 original size:42 final size:42
Alignment explanation
Indices: 91261583--91261682 Score: 155
Period size: 42 Copynumber: 2.3 Consensus size: 42
91261573 GGATATCAAA
*
91261583 ACAAGAATTAAGAACACATAATTAAGAACAAGTTAAATATTT
1 ACAACAATTAAGAACACATAATTAAGAACAAGTTAAATATTT
*
91261625 ACAAGAATTAAGAACACATAATTAAGAACAAGTTAAATATTT
1 ACAACAATTAAGAACACATAATTAAGAACAAGTTAAATATTT
*
91261667 ATCATACAATTTAGAA
1 A-CA-ACAATTAAGAA
91261683 AATAATAACA
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
42 43 0.80
43 2 0.04
44 9 0.17
ACGTcount: A:0.54, C:0.10, G:0.09, T:0.27
Consensus pattern (42 bp):
ACAACAATTAAGAACACATAATTAAGAACAAGTTAAATATTT
Found at i:91268757 original size:42 final size:41
Alignment explanation
Indices: 91268694--91268864 Score: 154
Period size: 42 Copynumber: 4.1 Consensus size: 41
91268684 AGTCCGACTC
*
91268694 TTAG-CACCGGCTCAAAAGCCCTTCGAGACCAAGCTCGGAT
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGAT
* * * *
91268734 TTAGACTACTGGCTCGAAGGCCCTTCG-GAACTAAG-TCCGA-
1 TTAGAC-ACTGGCTCAAAAGCCCTTCGAG-ACCAAGCTCGGAT
* * * * *
91268774 TCATGACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTT
1 TTA-GACACTGGCTC--AAAAGCCCTTCGAGACCAAGCTCGGAT
*
91268818 ATTAG-CACTGGCTCAAAAGCCCTTTGAGACCAAGCTCGGAT
1 -TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGAT
91268859 TTAGAC
1 TTAGAC
91268865 CTCGATTAGC
Statistics
Matches: 103, Mismatches: 17, Indels: 21
0.73 0.12 0.15
Matches are distributed among these distances:
40 18 0.17
41 32 0.31
42 38 0.37
43 12 0.12
44 1 0.01
45 2 0.02
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (41 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGAT
Found at i:91268975 original size:66 final size:66
Alignment explanation
Indices: 91268901--91269035 Score: 270
Period size: 66 Copynumber: 2.0 Consensus size: 66
91268891 ATATATATAT
91268901 ATCATATCACATCTGGATATCATTCCTGATACTCGAATACAATTACAGCATGTTTACTAACCATA
1 ATCATATCACATCTGGATATCATTCCTGATACTCGAATACAATTACAGCATGTTTACTAACCATA
91268966 C
66 C
91268967 ATCATATCACATCTGGATATCATTCCTGATACTCGAATACAATTACAGCATGTTTACTAACCATA
1 ATCATATCACATCTGGATATCATTCCTGATACTCGAATACAATTACAGCATGTTTACTAACCATA
91269032 C
66 C
91269033 ATC
1 ATC
91269036 GATCGATTCA
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 69 1.00
ACGTcount: A:0.35, C:0.24, G:0.09, T:0.32
Consensus pattern (66 bp):
ATCATATCACATCTGGATATCATTCCTGATACTCGAATACAATTACAGCATGTTTACTAACCATA
C
Found at i:91273832 original size:43 final size:42
Alignment explanation
Indices: 91273745--91273852 Score: 110
Period size: 43 Copynumber: 2.5 Consensus size: 42
91273735 ATCTCATACA
* * ** * *
91273745 ATGCCATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCATAGCCCAGATATGGTCTTACACGAAATCAAATAACG
*
91273787 ATGCCGATAGCCCAGCTATGGTCTTACACGAAATCAAATAACG
1 ATGCC-ATAGCCCAGATATGGTCTTACACGAAATCAAATAACG
*
91273830 ATGCCA-ATGTCCCAGACATGGTC
1 ATGCCATA-G-CCCAGATATGGTC
91273853 ACGTAATCTC
Statistics
Matches: 54, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
41 1 0.02
42 7 0.13
43 46 0.85
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (42 bp):
ATGCCATAGCCCAGATATGGTCTTACACGAAATCAAATAACG
Found at i:91291621 original size:13 final size:15
Alignment explanation
Indices: 91291593--91291625 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
91291583 TAATAAAATA
91291593 AAATATTTTATAATT
1 AAATATTTTATAATT
91291608 AAATA-TTT-TAATT
1 AAATATTTTATAATT
91291621 AAATA
1 AAATA
91291626 AATCTAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 10 0.56
14 3 0.17
15 5 0.28
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
AAATATTTTATAATT
Found at i:91294243 original size:40 final size:41
Alignment explanation
Indices: 91294188--91294286 Score: 128
Period size: 40 Copynumber: 2.4 Consensus size: 41
91294178 TACTCGAAAG
* *
91294188 GGATAACATATGAAAAGGTTGAAAAAGA-AATATCCAAAAA
1 GGATATCAAATGAAAAGGTTGAAAAAGACAATATCCAAAAA
** * *
91294228 GGATATCAAATGAAAAGGTTGAAAAAGACGTTATTCGAAAA
1 GGATATCAAATGAAAAGGTTGAAAAAGACAATATCCAAAAA
*
91294269 TGATATCAAATGAAAAGG
1 GGATATCAAATGAAAAGG
91294287 AAGAAAATGA
Statistics
Matches: 51, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
40 26 0.51
41 25 0.49
ACGTcount: A:0.53, C:0.07, G:0.20, T:0.20
Consensus pattern (41 bp):
GGATATCAAATGAAAAGGTTGAAAAAGACAATATCCAAAAA
Found at i:91294286 original size:41 final size:40
Alignment explanation
Indices: 91294157--91294326 Score: 146
Period size: 41 Copynumber: 4.2 Consensus size: 40
91294147 TTTGAATACT
* * * * * *
91294157 TGAAAATGTTGAAAAGGAAGTTACTCGAAAGGGATAACATA
1 TGAAAAGGTTGAAAAAG-AGTTATTCGAAAAGGATATCAAA
** * *
91294198 TGAAAAGGTTGAAAAAGAAATATCCAAAAAGGATATCAAA
1 TGAAAAGGTTGAAAAAGAGTTATTCGAAAAGGATATCAAA
*
91294238 TGAAAAGGTTGAAAAAGACGTTATTCGAAAATGATATCAAA
1 TGAAAAGGTTGAAAAAGA-GTTATTCGAAAAGGATATCAAA
** * * *
91294279 TGAAAAGGAAGAAAATGA-TGGAATCAGAAAAGGATATC-AA
1 TGAAAAGGTTGAAAAAGAGT-TATTC-GAAAAGGATATCAAA
91294319 TGAAAAGG
1 TGAAAAGG
91294327 CCGAAAAGGA
Statistics
Matches: 105, Mismatches: 21, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 46 0.44
41 58 0.55
ACGTcount: A:0.52, C:0.06, G:0.22, T:0.19
Consensus pattern (40 bp):
TGAAAAGGTTGAAAAAGAGTTATTCGAAAAGGATATCAAA
Found at i:91294293 original size:81 final size:80
Alignment explanation
Indices: 91294157--91294326 Score: 182
Period size: 81 Copynumber: 2.1 Consensus size: 80
91294147 TTTGAATACT
* * * * **
91294157 TGAAAATGTTGAAAAGGAAGTTACTCGAAAGGGATAACATATGAAAAGGTTGAAAAAGA-AATAT
1 TGAAAAGGTTGAAAAAGAAGTTACTCGAAAAGGATAACAAATGAAAAGGAAGAAAAAGAGAA-AT
91294221 CCA-AAAAGGATATCAAA
65 -CAGAAAAGGATATC-AA
* * * * * *
91294238 TGAAAAGGTTGAAAAAGACGTTATTCGAAAATGATATCAAATGAAAAGGAAGAAAATGATGGAAT
1 TGAAAAGGTTGAAAAAGAAGTTACTCGAAAAGGATAACAAATGAAAAGGAAGAAAAAGA-GAAAT
91294303 CAGAAAAGGATATCAA
65 CAGAAAAGGATATCAA
91294319 TGAAAAGG
1 TGAAAAGG
91294327 CCGAAAAGGA
Statistics
Matches: 74, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
81 60 0.81
82 13 0.18
83 1 0.01
ACGTcount: A:0.52, C:0.06, G:0.22, T:0.19
Consensus pattern (80 bp):
TGAAAAGGTTGAAAAAGAAGTTACTCGAAAAGGATAACAAATGAAAAGGAAGAAAAAGAGAAATC
AGAAAAGGATATCAA
Found at i:91326982 original size:25 final size:25
Alignment explanation
Indices: 91326935--91326982 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
91326925 TTATAATATG
* * *
91326935 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCATAGGTA
91326960 AAAATGACCATTATACCCATAGG
1 AAAATGACCATTATACCCATAGG
91326983 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCATAGGTA
Found at i:91327044 original size:20 final size:20
Alignment explanation
Indices: 91327019--91327065 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
91327009 ATTTTGATAA
91327019 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
91327039 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
91327059 ACATGAT
1 ACATGAT
91327066 GTGTTCATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:91327142 original size:24 final size:24
Alignment explanation
Indices: 91327115--91327233 Score: 147
Period size: 24 Copynumber: 5.0 Consensus size: 24
91327105 GAGGAAGTGT
91327115 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
91327139 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
91327162 TAAAGGGCTTATGCCCCAGTTATTA
1 AAAAGGGCTTATGCCCCAGTTA-TC
91327187 AAAAGGGCTT-TGCCCCAGTTA-C
1 AAAAGGGCTTATGCCCCAGTTATC
*
91327209 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 -AAAAG-GGCTTATGCC-CCAGTTAT
91327234 ATGATAAAGC
Statistics
Matches: 84, Mismatches: 4, Indels: 12
0.84 0.04 0.12
Matches are distributed among these distances:
23 27 0.32
24 41 0.49
25 16 0.19
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:91327201 original size:47 final size:47
Alignment explanation
Indices: 91327116--91327234 Score: 161
Period size: 47 Copynumber: 2.5 Consensus size: 47
91327106 AGGAAGTGTA
* *
91327116 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTACT
91327163 AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTT-TGCCCCAGTTACT
1 AAAGGGCTTATGCCCCAGTTA-TAAAAAGGGCTTATGCCCCAGTTACT
*
91327210 AAAAGAGGC-TAGGCCTCCAGTTATA
1 -AAAG-GGCTTATGCC-CCAGTTATA
91327235 TGATAAAGCA
Statistics
Matches: 65, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
47 33 0.51
48 22 0.34
49 10 0.15
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTACT
Found at i:91327464 original size:31 final size:31
Alignment explanation
Indices: 91327426--91327489 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
91327416 CGTTTACAGT
91327426 AAAGGCTTCGACCCAATAATATGAAATATGA
1 AAAGGCTTCGACCCAATAATATGAAATATGA
* * ** *
91327457 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGACCCAATAATATGAAATATGA
91327488 AA
1 AA
91327490 TATGAAAAGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGACCCAATAATATGAAATATGA
Found at i:91335036 original size:25 final size:25
Alignment explanation
Indices: 91334989--91335036 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
91334979 TTATAATATG
* * * *
91334989 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCATAGGTA
91335014 AAAATGACCATTATACCCATAGG
1 AAAATGACCATTATACCCATAGG
91335037 GTTTATATAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCATAGGTA
Found at i:91335098 original size:20 final size:20
Alignment explanation
Indices: 91335073--91335119 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
91335063 ATTTTGATAA
91335073 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
91335093 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
91335113 ACCTGAT
1 ACATGAT
91335120 GTGTTCATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:91335195 original size:24 final size:24
Alignment explanation
Indices: 91335168--91335287 Score: 140
Period size: 24 Copynumber: 5.0 Consensus size: 24
91335158 GGAGGAAGTG
91335168 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
91335192 CAAAAGGGCTTATGCCCCAATTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
91335216 -TAAAGGGCTTATGCCCCAGTTATT
1 CAAAAGGGCTTATGCCCCAGTTA-T
*
91335240 AAAAAGGGCTT-TGCCCCAGTTA-
1 CAAAAGGGCTTATGCCCCAGTTAT
*
91335262 CTAAAAGAGGC-TAGGCCTCCAGTTAT
1 C-AAAAG-GGCTTATGCC-CCAGTTAT
91335288 ATGATAAACC
Statistics
Matches: 83, Mismatches: 6, Indels: 12
0.82 0.06 0.12
Matches are distributed among these distances:
23 26 0.31
24 41 0.49
25 16 0.19
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:91335255 original size:47 final size:47
Alignment explanation
Indices: 91335170--91335288 Score: 152
Period size: 47 Copynumber: 2.5 Consensus size: 47
91335160 AGGAAGTGCA
* *
91335170 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAATTATT
1 AAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAATTACT
*
91335217 AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTT-TGCCCCAGTTACT
1 AAAGGGCTTATGCCCCAGTTA-TAAAAAGGGCTTATGCCCCAATTACT
*
91335264 AAAAGAGGC-TAGGCCTCCAGTTATA
1 -AAAG-GGCTTATGCC-CCAGTTATA
91335289 TGATAAACCA
Statistics
Matches: 64, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
47 32 0.50
48 22 0.34
49 10 0.16
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAATTACT
Found at i:91335515 original size:31 final size:31
Alignment explanation
Indices: 91335480--91335543 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
91335470 CGTTTACAGT
91335480 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
91335511 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
91335542 AA
1 AA
91335544 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:91342476 original size:23 final size:23
Alignment explanation
Indices: 91342445--91342504 Score: 111
Period size: 23 Copynumber: 2.6 Consensus size: 23
91342435 TGTCTCAAAG
*
91342445 CACACGGGCGTGTGCATTACCTC
1 CACATGGGCGTGTGCATTACCTC
91342468 CACATGGGCGTGTGCATTACCTC
1 CACATGGGCGTGTGCATTACCTC
91342491 CACATGGGCGTGTG
1 CACATGGGCGTGTG
91342505 AGGCTTGAAC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.17, C:0.30, G:0.30, T:0.23
Consensus pattern (23 bp):
CACATGGGCGTGTGCATTACCTC
Found at i:91343159 original size:47 final size:47
Alignment explanation
Indices: 91343087--91343179 Score: 141
Period size: 47 Copynumber: 2.0 Consensus size: 47
91343077 AATGACACGG
** * * *
91343087 GAGTGTAGAGAGCACATGGGTGTGTCCCTTGTCTCACACAGGCATGA
1 GAGTGTAGAGAGCACACAGGCGTGTCCCCTGTCTCACACAGACATGA
91343134 GAGTGTAGAGAGCACACAGGCGTGTCCCCTGTCTCACACAGACATG
1 GAGTGTAGAGAGCACACAGGCGTGTCCCCTGTCTCACACAGACATG
91343180 TGACTCTATA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 41 1.00
ACGTcount: A:0.25, C:0.25, G:0.30, T:0.20
Consensus pattern (47 bp):
GAGTGTAGAGAGCACACAGGCGTGTCCCCTGTCTCACACAGACATGA
Found at i:91347906 original size:21 final size:22
Alignment explanation
Indices: 91347873--91347915 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
91347863 TAGGAATTAG
91347873 GGTGTGTCGTTTTCTC-CTTTT
1 GGTGTGTCGTTTTCTCTCTTTT
*
91347894 GGTGTAGTC-TTTTTTCTCTTTT
1 GGTGT-GTCGTTTTCTCTCTTTT
91347916 TCTTTTTCAG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.02, C:0.16, G:0.21, T:0.60
Consensus pattern (22 bp):
GGTGTGTCGTTTTCTCTCTTTT
Found at i:91349094 original size:9 final size:10
Alignment explanation
Indices: 91349082--91349147 Score: 59
Period size: 9 Copynumber: 6.8 Consensus size: 10
91349072 TACATGGGAT
91349082 ATGATAT-AC
1 ATGATATGAC
*
91349091 ATGA-ATGAT
1 ATGATATGAC
91349100 ATGATATGCAC
1 ATGATATG-AC
*
91349111 ATGATATG-T
1 ATGATATGAC
*
91349120 ATGATATG-T
1 ATGATATGAC
91349129 ATGATATGCAC
1 ATGATATG-AC
91349140 ATGATATG
1 ATGATATG
91349148 TATGAAATGC
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
8 2 0.04
9 26 0.54
10 3 0.06
11 17 0.35
ACGTcount: A:0.38, C:0.08, G:0.20, T:0.35
Consensus pattern (10 bp):
ATGATATGAC
Found at i:91349115 original size:29 final size:29
Alignment explanation
Indices: 91349082--91349146 Score: 96
Period size: 29 Copynumber: 2.2 Consensus size: 29
91349072 TACATGGGAT
91349082 ATGATATACATGA-ATGATATGATATGCAC
1 ATGATATACATGATATG-TATGATATGCAC
**
91349111 ATGATATGTATGATATGTATGATATGCAC
1 ATGATATACATGATATGTATGATATGCAC
91349140 ATGATAT
1 ATGATAT
91349147 GTATGAAATG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
29 30 0.91
30 3 0.09
ACGTcount: A:0.38, C:0.08, G:0.18, T:0.35
Consensus pattern (29 bp):
ATGATATACATGATATGTATGATATGCAC
Found at i:91349131 original size:4 final size:5
Alignment explanation
Indices: 91349079--91349152 Score: 68
Period size: 5 Copynumber: 15.4 Consensus size: 5
91349069 TGATACATGG
* *
91349079 GATAT GATAT -ACAT GA-AT GATAT GATAT GCACAT GATAT G-TAT GATAT
1 GATAT GATAT GATAT GATAT GATAT GATAT G-ATAT GATAT GATAT GATAT
*
91349127 G-TAT GATAT GCACAT GATAT G-TAT GA
1 GATAT GATAT G-ATAT GATAT GATAT GA
91349153 AATGCACATG
Statistics
Matches: 57, Mismatches: 5, Indels: 14
0.75 0.07 0.18
Matches are distributed among these distances:
4 19 0.33
5 30 0.53
6 8 0.14
ACGTcount: A:0.38, C:0.07, G:0.20, T:0.35
Consensus pattern (5 bp):
GATAT
Found at i:91349148 original size:20 final size:20
Alignment explanation
Indices: 91349120--91349164 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
91349110 CATGATATGT
*
91349120 ATGATATGTATGATATGCAC
1 ATGATATGTATGAAATGCAC
91349140 ATGATATGTATGAAATGCAC
1 ATGATATGTATGAAATGCAC
91349160 ATGAT
1 ATGAT
91349165 GTAATCATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.33
Consensus pattern (20 bp):
ATGATATGTATGAAATGCAC
Found at i:91349152 original size:9 final size:9
Alignment explanation
Indices: 91349111--91349152 Score: 57
Period size: 9 Copynumber: 4.4 Consensus size: 9
91349101 TGATATGCAC
91349111 ATGATATGT
1 ATGATATGT
91349120 ATGATATGT
1 ATGATATGT
*
91349129 ATGATATGCAC
1 ATGATATG--T
91349140 ATGATATGT
1 ATGATATGT
91349149 ATGA
1 ATGA
91349153 AATGCACATG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 21 0.72
11 8 0.28
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.38
Consensus pattern (9 bp):
ATGATATGT
Found at i:91349256 original size:26 final size:26
Alignment explanation
Indices: 91349214--91349388 Score: 257
Period size: 26 Copynumber: 6.8 Consensus size: 26
91349204 GAGGAAGTGC
*
91349214 AAAAGGGC-TATGCCCCAGTTT-CTTG
1 AAAAGGGCTTATGCCCCAGTTTAC-CG
91349239 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
91349265 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
91349291 AAAAGGGCTTATGCCCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
91349317 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
91349343 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
91349369 AAAAGGGCTT-TGCCCTAGTT
1 AAAAGGGCTTATGCCCCAGTT
91349389 ATTAAAAGAG
Statistics
Matches: 136, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
25 17 0.12
26 118 0.87
27 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:91349292 original size:52 final size:52
Alignment explanation
Indices: 91349214--91349401 Score: 312
Period size: 52 Copynumber: 3.7 Consensus size: 52
91349204 GAGGAAGTGC
*
91349214 AAAAGGGC-TATGCCCCAGTTTCTTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
*
91349265 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
91349317 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
*
91349369 AAAAGGGCTT-TGCCCTAG-TTATT-AAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCT
91349402 AGGCCTCCAG
Statistics
Matches: 131, Mismatches: 4, Indels: 5
0.94 0.03 0.04
Matches are distributed among these distances:
49 5 0.04
50 9 0.07
51 15 0.11
52 102 0.78
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
Found at i:91357467 original size:9 final size:10
Alignment explanation
Indices: 91357446--91357502 Score: 57
Period size: 9 Copynumber: 5.8 Consensus size: 10
91357436 ATAGTGGGAT
91357446 ATGATAT-AC
1 ATGATATGAC
*
91357455 ATGA-ATGAT
1 ATGATATGAC
91357464 ATGATATGCAC
1 ATGATATG-AC
*
91357475 ATGATATG-T
1 ATGATATGAC
91357484 ATGATATGCAC
1 ATGATATG-AC
91357495 ATGATATG
1 ATGATATG
91357503 TATGAAATGC
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 2 0.05
9 17 0.44
10 3 0.08
11 17 0.44
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (10 bp):
ATGATATGAC
Found at i:91357478 original size:20 final size:20
Alignment explanation
Indices: 91357445--91357519 Score: 111
Period size: 20 Copynumber: 3.9 Consensus size: 20
91357435 GATAGTGGGA
91357445 TATGATAT--ACATGA-ATG
1 TATGATATGCACATGATATG
91357462 ATATGATATGCACATGATATG
1 -TATGATATGCACATGATATG
91357483 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
91357503 TATGAAATGCACATGAT
1 TATGATATGCACATGAT
91357520 GTAATCATAA
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
18 8 0.15
20 42 0.79
21 3 0.06
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:91357480 original size:11 final size:11
Alignment explanation
Indices: 91357464--91357519 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
91357454 CATGAATGAT
91357464 ATGATATGCAC
1 ATGATATGCAC
*
91357475 ATGATATG--T
1 ATGATATGCAC
91357484 ATGATATGCAC
1 ATGATATGCAC
*
91357495 ATGATATG--T
1 ATGATATGCAC
*
91357504 ATGAAATGCAC
1 ATGATATGCAC
91357515 ATGAT
1 ATGAT
91357520 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:91357611 original size:26 final size:26
Alignment explanation
Indices: 91357569--91357647 Score: 112
Period size: 26 Copynumber: 3.2 Consensus size: 26
91357559 GAGGAAGTGC
91357569 AAAAGGGC-TATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
91357594 AAAAGGGCTTATGCCCCAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
91357620 AAAAGGGCTT-TGCCCTAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
91357643 AAAAG
1 AAAAG
91357648 AAGCTAGGCC
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
23 5 0.10
24 4 0.08
25 15 0.30
26 26 0.52
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:91357893 original size:7 final size:7
Alignment explanation
Indices: 91357881--91357908 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
91357871 GGCCCAGTGT
91357881 TATGAAA
1 TATGAAA
91357888 TATGAAA
1 TATGAAA
91357895 TATGAAA
1 TATGAAA
91357902 TATGAAA
1 TATGAAA
91357909 AGGCTTCGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29
Consensus pattern (7 bp):
TATGAAA
Found at i:91362859 original size:10 final size:10
Alignment explanation
Indices: 91362844--91362873 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
91362834 GTTTTACACT
91362844 TAGGAGAGCA
1 TAGGAGAGCA
91362854 TAGGAGAGCA
1 TAGGAGAGCA
91362864 TAGGAGAGCA
1 TAGGAGAGCA
91362874 AAAGGAACGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.40, C:0.10, G:0.40, T:0.10
Consensus pattern (10 bp):
TAGGAGAGCA
Found at i:91375869 original size:47 final size:47
Alignment explanation
Indices: 91375815--91376099 Score: 428
Period size: 47 Copynumber: 6.1 Consensus size: 47
91375805 TTAGGATTTT
** * * *
91375815 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
91375862 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
91375909 ATGTGATGAATGCGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
91375956 ATGTGATGAATGCGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
91376003 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
91376050 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
91376097 ATG
1 ATG
91376100 CGAAACGTGT
Statistics
Matches: 222, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
47 219 0.99
48 3 0.01
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:91375915 original size:22 final size:22
Alignment explanation
Indices: 91375887--91376009 Score: 92
Period size: 22 Copynumber: 5.3 Consensus size: 22
91375877 ACATGCATAT
91375887 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* *
91375909 ATGTGATGAATG-CGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
91375933 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* *
91375956 ATGTGATGAATG-CGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
91375980 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
91376003 ATGTGAT
1 ATGTGAT
91376010 GAATGTGAAC
Statistics
Matches: 79, Mismatches: 8, Indels: 28
0.69 0.07 0.24
Matches are distributed among these distances:
22 25 0.32
23 18 0.23
24 18 0.23
25 18 0.23
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:91376126 original size:46 final size:46
Alignment explanation
Indices: 91376073--91376163 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 46
91376063 GGAAGTGTAT
* *
91376073 ATATGTGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
* * *
91376119 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATG
91376164 TGTATATATA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
Found at i:91381488 original size:42 final size:46
Alignment explanation
Indices: 91381378--91381495 Score: 127
Period size: 42 Copynumber: 2.6 Consensus size: 46
91381368 ACCACACATT
* * * *
91381378 GATGCCATATCCCAGACATGGTCTTATTCGAAGTCTCGAATCAGTGCC
1 GATGCCATGTCCCAGACATGGTCTTATACGAAGACTC--ATCAGTACC
* * *
91381426 GACGCCATGCCCCAAACATGGTCTTATACG-AGAC-C-TC-GTACC
1 GATGCCATGTCCCAGACATGGTCTTATACGAAGACTCATCAGTACC
91381468 GATGCCATGTCCCAGACATGGTCTTATA
1 GATGCCATGTCCCAGACATGGTCTTATA
91381496 GAAATCACTT
Statistics
Matches: 60, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
42 29 0.48
43 2 0.03
46 1 0.02
47 3 0.05
48 25 0.42
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (46 bp):
GATGCCATGTCCCAGACATGGTCTTATACGAAGACTCATCAGTACC
Found at i:91381584 original size:48 final size:47
Alignment explanation
Indices: 91381466--91381587 Score: 129
Period size: 48 Copynumber: 2.6 Consensus size: 47
91381456 AGACCTCGTA
* *
91381466 CCGATGCCATGTCCCAGACATGGTCTTATAGAAATCACTTATTGATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACAAATCACTTATTGATG
* * * * * *
91381513 CCGAAGCCATATCCCTGATATGGTCTTACACAGGATC-GTGTATTGATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACA-AATCACT-TATTGATG
* *
91381561 CTGATGCCATGTCCCAGGCATGGTCTT
1 CCGATGCCATGTCCCAGACATGGTCTT
91381588 TCATTGGATC
Statistics
Matches: 59, Mismatches: 14, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
47 27 0.46
48 32 0.54
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.30
Consensus pattern (47 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACAAATCACTTATTGATG
Found at i:91383063 original size:36 final size:36
Alignment explanation
Indices: 91383023--91383094 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
91383013 ATTGCATGGT
91383023 GTGCCATTATTTATCATTTTAGATTAGGATCTGAGG
1 GTGCCATTATTTATCATTTTAGATTAGGATCTGAGG
* *
91383059 GTGCCATTATTTATCATTTTAGATTGGGATTTGAGG
1 GTGCCATTATTTATCATTTTAGATTAGGATCTGAGG
91383095 TTTACCTCTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.24, C:0.10, G:0.24, T:0.43
Consensus pattern (36 bp):
GTGCCATTATTTATCATTTTAGATTAGGATCTGAGG
Found at i:91390126 original size:55 final size:55
Alignment explanation
Indices: 91390036--91390139 Score: 138
Period size: 55 Copynumber: 1.9 Consensus size: 55
91390026 ATGCCAAAAC
* *
91390036 AACACAGGCGTGCAACATGCCCGTGCATTGAAACCGTGGCCAAACCTGTCAATTT
1 AACACAGGCGTGCAACACGCCCGTGCATAGAAACCGTGGCCAAACCTGTCAATTT
* * * *
91390091 AACACAGGCGTGCGACACGCCCGTGCCA-AGCAACCGTGGTCGAACCTGT
1 AACACAGGCGTGCAACACGCCCGTG-CATAGAAACCGTGGCCAAACCTGT
91390140 GAAATTACCA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
55 40 0.95
56 2 0.05
ACGTcount: A:0.27, C:0.32, G:0.25, T:0.16
Consensus pattern (55 bp):
AACACAGGCGTGCAACACGCCCGTGCATAGAAACCGTGGCCAAACCTGTCAATTT
Found at i:91393181 original size:47 final size:47
Alignment explanation
Indices: 91393115--91393732 Score: 1024
Period size: 47 Copynumber: 13.1 Consensus size: 47
91393105 GAAATGATAG
91393115 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
91393162 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
91393211 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
91393258 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
91393305 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
91393352 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
91393401 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
91393448 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
91393495 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
91393542 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
91393589 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
91393636 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG-
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
91393682 -ACGGGCTGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
91393729 TAAG
1 TAAG
91393733 TCCCGAAGGG
Statistics
Matches: 545, Mismatches: 19, Indels: 13
0.94 0.03 0.02
Matches are distributed among these distances:
45 5 0.01
46 32 0.06
47 414 0.76
48 2 0.00
49 92 0.17
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:91393438 original size:190 final size:190
Alignment explanation
Indices: 91393115--91393732 Score: 1064
Period size: 190 Copynumber: 3.3 Consensus size: 190
91393105 GAAATGATAG
91393115 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
91393180 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
91393245 TGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
131 TGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
91393305 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
91393370 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
91393435 TGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
131 TGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
91393495 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
91393560 GTGATGAATGTGAAAGTG--TATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* *
91393623 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG-
131 TGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
91393682 -ACGGGCTGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
91393733 TCCCGAAGGG
Statistics
Matches: 409, Mismatches: 18, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
186 5 0.01
187 37 0.09
188 101 0.25
190 266 0.65
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (190 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:91405280 original size:46 final size:46
Alignment explanation
Indices: 91405227--91405443 Score: 208
Period size: 46 Copynumber: 4.6 Consensus size: 46
91405217 TGTGCAAGCT
* *
91405227 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGACGAGAGCC
* * * * *
91405273 AGTGTAAGACCATGTCTGGGACATGGCATCGG-TATAAAGACGAGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CATGACGAGAGCC
* * *
91405321 AGTGTAAGACATGTGTGGGACATGCAACGGCCTCGA-GACGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGACG-AGAGCC
* * * *
91405367 AGTGTAAGACATGTCTGGGACATGCATCGGCTAC-TAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACAT-GACGAGAGCC
91405413 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
91405444 ACTTGAGATA
Statistics
Matches: 140, Mismatches: 20, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
45 1 0.01
46 66 0.47
47 44 0.31
48 29 0.21
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGACGAGAGCC
Found at i:91405468 original size:47 final size:45
Alignment explanation
Indices: 91405222--91405492 Score: 160
Period size: 47 Copynumber: 5.8 Consensus size: 45
91405212 ATTCGTGTGC
* * *
91405222 AAGCTAGTGTAAGACATGTCTGGGACATGCATCGGC--CACATTAT
1 AAGCTAGTGTAAGACATGTCTGGGACATGCATCGACTTGAGA-TAT
* ** *
91405266 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTA-TAAAGACGA-
1 -A-AGCTAGTGTAAGA-CATGTCTGGGACAT-GCATC-G-ACTTGAGA-TAT
** * * * * **
91405316 GGGCTAGTGTAAGACATGTGTGGGACATGCAACGGCCTCGAGACGT
1 AAGCTAGTGTAAGACATGTCTGGGACATGCATC-GACTTGAGATAT
* *
91405362 AAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACT-AGATGAT
1 AAGCTAGTGTAAGACATGTCTGGGACATGCATCGACT--TGAGAT-AT
91405409 -AG-TCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATAT
1 AAGCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGACTTGAGATAT
* * *
91405455 AAGCTAGTATAAGACCGTGTCTAGGACATGGCATCGAC
1 AAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGAC
91405493 ACCTTACCCT
Statistics
Matches: 178, Mismatches: 30, Indels: 34
0.74 0.12 0.14
Matches are distributed among these distances:
45 4 0.02
46 67 0.38
47 78 0.44
48 25 0.14
49 1 0.01
51 3 0.02
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (45 bp):
AAGCTAGTGTAAGACATGTCTGGGACATGCATCGACTTGAGATAT
Found at i:91412945 original size:47 final size:47
Alignment explanation
Indices: 91412713--91412986 Score: 179
Period size: 47 Copynumber: 5.9 Consensus size: 47
91412703 GTCATTCGTG
* * * * *
91412713 TGTAAGCTAATGTAAG-ACATGTCTGGGACAT-GAATAGGCTAC-ATTA
1 TGTAAGCCAGTGTAAGAACATGTCTGGGACATGGCATCGGCT-CGA-GA
* *
91412759 TG-AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGA
1 TGTA-AGCCAGTGTAAGAACATGTCTGGGACATGGCATCGGC-TCGAGA
* *** * * *
91412807 CGGGGGCTAGTGTAAG-ACACGTCTGGGACAT-GCAACGGCCTCGAGA
1 TGTAAGCCAGTGTAAGAACATGTCTGGGACATGGCATCGG-CTCGAGA
* * *
91412853 TGTAAGCCAATGTAAG-ACATGTCTGGGACAT-GCATCGGTTATGAGA
1 TGTAAGCCAGTGTAAGAACATGTCTGGGACATGGCATCGGCT-CGAGA
* * *
91412899 TG-ATAGTCAGTGTAAGAACATGTCTGGGACATGGCATCGACTTGAGA
1 TGTA-AGCCAGTGTAAGAACATGTCTGGGACATGGCATCGGCTCGAGA
* * * * * * *
91412946 TATGAGCCGGTATAAGACCGTGTCTAGGACATGGCATCGGC
1 TGTAAGCCAGTGTAAGAACATGTCTGGGACATGGCATCGGC
91412987 ACCTTACCCT
Statistics
Matches: 179, Mismatches: 37, Indels: 23
0.75 0.15 0.10
Matches are distributed among these distances:
45 3 0.02
46 69 0.39
47 79 0.44
48 26 0.15
49 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (47 bp):
TGTAAGCCAGTGTAAGAACATGTCTGGGACATGGCATCGGCTCGAGA
Found at i:91412976 original size:140 final size:140
Alignment explanation
Indices: 91412713--91412978 Score: 304
Period size: 140 Copynumber: 1.9 Consensus size: 140
91412703 GTCATTCGTG
* * *
91412713 TGTAAGCTAATGTAAGACATGTCTGGGACATGAATAGGCTACATTATGAGAGCCAGTGTAAGACC
1 TGTAAGCCAATGTAAGACATGTCTGGGACATGAATAGGCTACATGATGAGAGCCAGTGTAAGAAC
* * * * * * *
91412778 ATGTCTGGGACATGGCATTGGCATCGAGACGGGGGCTAGTGTAAGACACGTCTGGGACATGCAAC
66 ATGTCTGGGACATGGCATCGACATCGAGACAGGAGCCAGTATAAGACACGTCTAGGACATGCAAC
91412843 GGCCTCGAGA
131 GGCCTCGAGA
* * * * * *
91412853 TGTAAGCCAATGTAAGACATGTCTGGGACATGCATCGGTTATGA-GATGATAGTCAGTGTAAGAA
1 TGTAAGCCAATGTAAGACATGTCTGGGACATGAATAGGCTA-CATGATGAGAGCCAGTGTAAGAA
* * * *
91412917 CATGTCTGGGACATGGCATCGAC-TTGAGATATGAGCCGGTATAAGAC-CGTGTCTAGGACATG
65 CATGTCTGGGACATGGCATCGACATCGAGACAGGAGCCAGTATAAGACAC--GTCTAGGACATG
91412979 GCATCGGCAC
Statistics
Matches: 103, Mismatches: 20, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
138 1 0.01
139 16 0.16
140 85 0.83
141 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (140 bp):
TGTAAGCCAATGTAAGACATGTCTGGGACATGAATAGGCTACATGATGAGAGCCAGTGTAAGAAC
ATGTCTGGGACATGGCATCGACATCGAGACAGGAGCCAGTATAAGACACGTCTAGGACATGCAAC
GGCCTCGAGA
Found at i:91415594 original size:56 final size:56
Alignment explanation
Indices: 91415530--91415667 Score: 206
Period size: 56 Copynumber: 2.5 Consensus size: 56
91415520 TCCCAGATAG
* *
91415530 GGTCTTACTCGCACACATATACCAGA-GTCACATATCGATGTCAACGTATAAAATGT
1 GGTCTTACTCGCACACATATACC-GATGTCACATATCGATGCCAACATATAAAATGT
* * *
91415586 GGTCTTACTGGCACACATATATCGATGTCACATATCGATGCCAATATATAAAATGT
1 GGTCTTACTCGCACACATATACCGATGTCACATATCGATGCCAACATATAAAATGT
*
91415642 GGTCTTACTCGCACACATATATCGAT
1 GGTCTTACTCGCACACATATACCGAT
91415668 TCCATGGTCT
Statistics
Matches: 75, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
55 2 0.03
56 73 0.97
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATACCGATGTCACATATCGATGCCAACATATAAAATGT
Found at i:91416842 original size:14 final size:15
Alignment explanation
Indices: 91416823--91416851 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
91416813 GCACAAAATT
91416823 TTCACACAT-ATAAA
1 TTCACACATAATAAA
91416837 TTCACACATAATAAA
1 TTCACACATAATAAA
91416852 AATAAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:91420433 original size:15 final size:15
Alignment explanation
Indices: 91420413--91420443 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
91420403 AAATATGAAA
91420413 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
91420428 GATATGTTTTGTATT
1 GATATGTTTTGGATT
91420443 G
1 G
91420444 GAATTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:91421143 original size:56 final size:56
Alignment explanation
Indices: 91421057--91421191 Score: 234
Period size: 56 Copynumber: 2.4 Consensus size: 56
91421047 CCATGGCATC
* *
91421057 GATATATGTGTGCGCGTAAGACCACGTTTTATACGTTGGCATCAATATGTGACTCT
1 GATATATGTGTGCGAGTAAGACCACATTTTATACGTTGGCATCAATATGTGACTCT
* *
91421113 GATATATGTGTGCGTGTAATACCACATTTTATACGTTGGCATCAATATGTGACTCT
1 GATATATGTGTGCGAGTAAGACCACATTTTATACGTTGGCATCAATATGTGACTCT
91421169 GATATATGTGTGCGAGTAAGACC
1 GATATATGTGTGCGAGTAAGACC
91421192 CTGTCTGGGA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 74 1.00
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (56 bp):
GATATATGTGTGCGAGTAAGACCACATTTTATACGTTGGCATCAATATGTGACTCT
Found at i:91422395 original size:24 final size:23
Alignment explanation
Indices: 91422359--91422403 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
91422349 TTATTTATTG
*
91422359 ATATGGATTGATATGATATATAT
1 ATATGGATTGATAAGATATATAT
*
91422382 ATATGTATATGATAAGATATAT
1 ATATGGAT-TGATAAGATATAT
91422404 TTGTAATGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 7 0.37
24 12 0.63
ACGTcount: A:0.42, C:0.00, G:0.16, T:0.42
Consensus pattern (23 bp):
ATATGGATTGATAAGATATATAT
Found at i:91422403 original size:20 final size:19
Alignment explanation
Indices: 91422369--91422408 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
91422359 ATATGGATTG
*
91422369 ATATGATATATATATATGT
1 ATATGATAGATATATATGT
*
91422388 ATATGATAAGATATATTTGT
1 ATATGAT-AGATATATATGT
91422408 A
1 A
91422409 ATGTATTTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.45
Consensus pattern (19 bp):
ATATGATAGATATATATGT
Found at i:91425996 original size:73 final size:73
Alignment explanation
Indices: 91425877--91426023 Score: 294
Period size: 73 Copynumber: 2.0 Consensus size: 73
91425867 GAATGTCTAT
91425877 TGATTTGAATTCTTGTACTAGGAATTGGTACTTAATGAAATTTCTCAAAATGTTGCCCTATTAGT
1 TGATTTGAATTCTTGTACTAGGAATTGGTACTTAATGAAATTTCTCAAAATGTTGCCCTATTAGT
91425942 AATATATA
66 AATATATA
91425950 TGATTTGAATTCTTGTACTAGGAATTGGTACTTAATGAAATTTCTCAAAATGTTGCCCTATTAGT
1 TGATTTGAATTCTTGTACTAGGAATTGGTACTTAATGAAATTTCTCAAAATGTTGCCCTATTAGT
91426015 AATATATA
66 AATATATA
91426023 T
1 T
91426024 ATGAATGAAT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 74 1.00
ACGTcount: A:0.33, C:0.11, G:0.15, T:0.41
Consensus pattern (73 bp):
TGATTTGAATTCTTGTACTAGGAATTGGTACTTAATGAAATTTCTCAAAATGTTGCCCTATTAGT
AATATATA
Found at i:91429189 original size:16 final size:16
Alignment explanation
Indices: 91429168--91429199 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
91429158 CAAGAACTTT
*
91429168 TCTTAATGTTTCAAGG
1 TCTTAATCTTTCAAGG
91429184 TCTTAATCTTTCAAGG
1 TCTTAATCTTTCAAGG
91429200 AGATTACAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.16, T:0.44
Consensus pattern (16 bp):
TCTTAATCTTTCAAGG
Found at i:91431072 original size:48 final size:47
Alignment explanation
Indices: 91430952--91431126 Score: 219
Period size: 48 Copynumber: 3.7 Consensus size: 47
91430942 TGATATGTAT
* **
91430952 GCTAGTGTAAGACATGTCTGGGACATGCATCG-GT-GACATATTGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGCGTCGAGATATACA-A
* *
91430998 GCTAGTGTAAGACATGTCTGGGACATGCATTGACGTCGAGATATACCA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCG-CGTCGAGATATACAA
* * *
91431046 GCCAGTGTAAGACATGTCTTGGACATGCATCGGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATC-GCGTCGAGATATACAA
*
91431094 GCTAGTGTAAGACCTGTCTGGGACATGGCATCG
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCG
91431127 ACATTGATGG
Statistics
Matches: 111, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
46 31 0.28
48 68 0.61
49 12 0.11
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGCGTCGAGATATACAA
Found at i:91431153 original size:49 final size:48
Alignment explanation
Indices: 91430955--91431267 Score: 189
Period size: 49 Copynumber: 6.5 Consensus size: 48
91430945 TATGTATGCT
* * *
91430955 AGTGTAAGACATGTCTGGGACAT-GCATCGGTGACA-T-AT--TGAGAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATC---GACATTGATGATGAAAGCC
* * * *
91431001 AGTGTAAGACATGTCTGGGACAT-GCATTGACGTCGA-GAT-ATACCAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATGATGA-A--AGCC
* * * * * * *
91431049 AGTGTAAGACATGTCTTGGACAT-GCATCGGCCTCGA-GATATACAAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATGAT-GA-AAGCC
*
91431097 AGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATGGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATTGAT-GATGAAAGCC
* * * * * * * * *
91431146 AGTGTAAGACCTGTTTGGGACACGACATTGGCCTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATTGAT-GATGAAAGCC
* * * **
91431195 AATGTAAGACCTATCTGGGACATGGCATCGACTTTGATG-TGCTAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATGATGAAAGCC
91431242 AGTGTAAGACCATGTCTGGGACATGG
1 AGTGTAAGACC-TGTCTGGGACATGG
91431268 GACGGCATCT
Statistics
Matches: 209, Mismatches: 45, Indels: 24
0.75 0.16 0.09
Matches are distributed among these distances:
43 3 0.01
45 2 0.01
46 28 0.13
47 15 0.07
48 75 0.36
49 80 0.38
50 3 0.01
51 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATGATGAAAGCC
Found at i:91431212 original size:98 final size:95
Alignment explanation
Indices: 91431045--91431264 Score: 266
Period size: 98 Copynumber: 2.3 Consensus size: 95
91431035 GAGATATACC
* * *
91431045 AGCCAGTGTAAGACATGTCTT-GGACATGCATCGGCCTCGAGATATACAAGCTAGTGTAAGACCT
1 AGCCAGTGTAAGACCTGT-TTGGGACACGCATCGGCCTCGAGATATACAAGCTAATGTAAGACCT
*
91431109 GTCTGGGACATGGCATCGACATTGATGGATGAG
65 ATCTGGGACATGGCATCGACATTGAT-G-TGAG
* *
91431142 AGCCAGTGTAAGACCTGTTTGGGACACGACATTGGCCTCGATATATGA-AAG-TCAATGTAAGAC
1 AGCCAGTGTAAGACCTGTTTGGGACACG-CATCGGCCTCGAGATAT-ACAAGCT-AATGTAAGAC
* **
91431205 CTATCTGGGACATGGCATCGACTTTGATGTGCT
63 CTATCTGGGACATGGCATCGACATTGATGTGAG
*
91431238 AGCCAGTGTAAGACCATGTCTGGGACA
1 AGCCAGTGTAAGACC-TGTTTGGGACA
91431265 TGGGACGGCA
Statistics
Matches: 108, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
96 19 0.18
97 35 0.32
98 53 0.49
99 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (95 bp):
AGCCAGTGTAAGACCTGTTTGGGACACGCATCGGCCTCGAGATATACAAGCTAATGTAAGACCTA
TCTGGGACATGGCATCGACATTGATGTGAG
Found at i:91431264 original size:48 final size:47
Alignment explanation
Indices: 91430955--91431267 Score: 190
Period size: 48 Copynumber: 6.5 Consensus size: 47
91430945 TATGTATGCT
* * * * *
91430955 AGTGTAAGACATGTCTGGGACAT-GCATCG-GTGACATATTG-AGAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACTTAGATA-TGCA-AGCC
* * * * *
91431001 AGTGTAAGACATGTCTGGGACAT-GCATTGACGTCGAGATATACCAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-T-TAGATATGCAAGCC
* * * * * *
91431049 AGTGTAAGACATGTCTTGGACAT-GCATCGGCCTCGAGATATACAAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATC-GACT-TAGATATGCAAGCC
91431097 AGTGTAAGACCTGTCTGGGACATGGCATCGACATT-GATGGATG-AGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-TTAGAT--ATGCA-AGCC
* * * * * * * * *
91431146 AGTGTAAGACCTGTTTGGGACACGACATTGGCCTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCA-TCGACT-TAGATATGCAAGCC
* * * * *
91431195 AATGTAAGACCTATCTGGGACATGGCATCGACTTTGATGTGCTAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACTTAGATATGCAAGCC
91431242 AGTGTAAGACCATGTCTGGGACATGG
1 AGTGTAAGACC-TGTCTGGGACATGG
91431268 GACGGCATCT
Statistics
Matches: 211, Mismatches: 41, Indels: 28
0.75 0.15 0.10
Matches are distributed among these distances:
46 28 0.13
47 20 0.09
48 86 0.41
49 71 0.34
50 4 0.02
51 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACTTAGATATGCAAGCC
Found at i:91441376 original size:45 final size:45
Alignment explanation
Indices: 91441327--91441497 Score: 206
Period size: 45 Copynumber: 3.8 Consensus size: 45
91441317 TGGTTGAGCA
91441327 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATG
* * *
91441372 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA-T--G
*
91441417 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AATG
* *
91441464 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
91441498 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 8, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 6 0.06
43 1 0.01
44 2 0.02
45 58 0.54
46 3 0.03
47 32 0.30
49 4 0.04
50 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATG
Found at i:91441481 original size:92 final size:92
Alignment explanation
Indices: 91441324--91441492 Score: 295
Period size: 92 Copynumber: 1.8 Consensus size: 92
91441314 GGATGGTTGA
* *
91441324 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGCCCGAACTCGTTGAGTT
91441389 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
*
91441416 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACGCCCGAACTCGTTGAGT
91441480 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
91441493 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
91 10 0.14
92 63 0.86
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:91448940 original size:45 final size:46
Alignment explanation
Indices: 91448891--91449015 Score: 207
Period size: 45 Copynumber: 2.7 Consensus size: 46
91448881 TGGTTGAGCA
*
91448891 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
91448936 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
91448982 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
91449016 GGGGCGGGTT
Statistics
Matches: 74, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
45 40 0.54
46 34 0.46
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:91449276 original size:19 final size:20
Alignment explanation
Indices: 91449239--91449276 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
91449229 ATAAGGTGGT
91449239 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
91449259 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
91449277 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:91453864 original size:46 final size:45
Alignment explanation
Indices: 91453808--91453974 Score: 210
Period size: 46 Copynumber: 3.6 Consensus size: 45
91453798 TGATATGTGT
91453808 GCTAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGACGAAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGAC-AAA
* *
91453854 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCATTGAGACAAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGACAA-A
* * * *
91453900 GCTAGTGTAAGACATGTCTGGGACATGCATTAGCCA-CGAGATATATAA
1 GCTAGTGTAAGACATGTCTGGGACATGCA-TCGACATTGAG--ACA-AA
*
91453948 GCTAGTGTAAGACTTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
91453975 GCGTCACCTT
Statistics
Matches: 108, Mismatches: 8, Indels: 8
0.87 0.06 0.06
Matches are distributed among these distances:
45 2 0.02
46 72 0.67
47 4 0.04
48 29 0.27
49 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.25
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGACAAA
Done.