Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 274 of 349
Found at i:91459300 original size:42 final size:42
Alignment explanation
Indices: 91459238--91459393 Score: 150
Period size: 42 Copynumber: 3.7 Consensus size: 42
91459228 TAAGATGCCA
* ** *
91459238 ATGCCATGTCCCAAACATGGTCTTACATGGGATCTCACATCG
1 ATGCCATATCCCAAACATGGTCTTACATGAAATCTCATATCG
* * * * *
91459280 ATGCCATATCCCAGATATGGTCTTATACGAAATCTCATTTCG
1 ATGCCATATCCCAAACATGGTCTTACATGAAATCTCATATCG
* * * * * *
91459322 ATGCCGTGTCCCAGACGTGGTTTTACATGAAATCTCATATCA
1 ATGCCATATCCCAAACATGGTCTTACATGAAATCTCATATCG
** *
91459364 ACACCATATCCCAAATATGGTCTTACATGA
1 ATGCCATATCCCAAACATGGTCTTACATGA
91459394 CAACACATAC
Statistics
Matches: 88, Mismatches: 26, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
42 88 1.00
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAAACATGGTCTTACATGAAATCTCATATCG
Found at i:91465566 original size:22 final size:21
Alignment explanation
Indices: 91465533--91465574 Score: 75
Period size: 22 Copynumber: 2.0 Consensus size: 21
91465523 TCGATATCAG
91465533 ACTAAAGTATCGATACTTTAT
1 ACTAAAGTATCGATACTTTAT
91465554 ACTAACAGTATCGATACTTTA
1 ACTAA-AGTATCGATACTTTA
91465575 CAAGATATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.36
Consensus pattern (21 bp):
ACTAAAGTATCGATACTTTAT
Found at i:91467680 original size:107 final size:108
Alignment explanation
Indices: 91467489--91467694 Score: 256
Period size: 107 Copynumber: 1.9 Consensus size: 108
91467479 TACCATCATA
* *
91467489 ATAATATAAATTATTTAAAATGATAAGGTTATTTTACTAATTTTCTTAACCAAGTTGGTATTGAG
1 ATAATATAAATTATTTAAAATGATAAGGTTATTTTACTAATTTCCTTAACCAAGTTGGTATCGAG
* *
91467554 TTGACTTGTGACACTAACTTAATCACACATTTAAGCAATAGAT
66 TTGACTTGTGACACCAACTTAATCACACAATTAAGCAATAGAT
* ** * * ** *
91467597 ATAATATAACTTATTTAAAAT-ATGACTGTTA-TTTAGTAATTTCCTTGATTAAGTTGGTGTCGA
1 ATAATATAAATTATTTAAAATGAT-AAGGTTATTTTACTAATTTCCTTAACCAAGTTGGTATCGA
*
91467660 GTTGA-TTCGTGACACCAACTTAGTCACACAATTAA
65 GTTGACTT-GTGACACCAACTTAATCACACAATTAA
91467695 ATAATAGTAT
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
106 2 0.02
107 56 0.67
108 25 0.30
ACGTcount: A:0.36, C:0.12, G:0.13, T:0.39
Consensus pattern (108 bp):
ATAATATAAATTATTTAAAATGATAAGGTTATTTTACTAATTTCCTTAACCAAGTTGGTATCGAG
TTGACTTGTGACACCAACTTAATCACACAATTAAGCAATAGAT
Found at i:91472725 original size:13 final size:13
Alignment explanation
Indices: 91472707--91472734 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
91472697 AGAGATGAGA
91472707 TGTTTAGTTCACT
1 TGTTTAGTTCACT
91472720 TGTTTAGTTCACT
1 TGTTTAGTTCACT
91472733 TG
1 TG
91472735 AAAATATGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.18, T:0.54
Consensus pattern (13 bp):
TGTTTAGTTCACT
Found at i:91479460 original size:40 final size:40
Alignment explanation
Indices: 91479416--91479507 Score: 184
Period size: 40 Copynumber: 2.3 Consensus size: 40
91479406 AATGAACAAC
91479416 TTTTGTGAAGTTGTTTTCATGAAAACACCTAAGAGGACCA
1 TTTTGTGAAGTTGTTTTCATGAAAACACCTAAGAGGACCA
91479456 TTTTGTGAAGTTGTTTTCATGAAAACACCTAAGAGGACCA
1 TTTTGTGAAGTTGTTTTCATGAAAACACCTAAGAGGACCA
91479496 TTTTGTGAAGTT
1 TTTTGTGAAGTT
91479508 TATAAAATAG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (40 bp):
TTTTGTGAAGTTGTTTTCATGAAAACACCTAAGAGGACCA
Found at i:91480082 original size:48 final size:48
Alignment explanation
Indices: 91480008--91480328 Score: 255
Period size: 48 Copynumber: 6.7 Consensus size: 48
91479998 TGATATGTGT
* *
91480008 GCTAGTGTAAGACCATGTATGGGACATGGCATCAGCCACATTATAAGA
1 GCTAGTGTAAGACCATGTCTGAGACATGGCATCAGCCACATTATAAGA
* * *
91480056 GCTAGTGTAAGACCATGTTTGAGACATGGCATC-G--GCATTGATAGGTGA
1 GCTAGTGTAAGACCATGTCTGAGACATGGCATCAGCCACATT-ATA--AGA
* * **** ** *
91480104 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTGTTGA-TATGTGT
1 GCTAGTGTAAGACCATGTCTGAGACATGGCATCAG-CCACATTATAAGA
** *
91480152 GCTAGTGTAAGACCATGTCTGAGACATGAAATCAGCCACATTATGAGA
1 GCTAGTGTAAGACCATGTCTGAGACATGGCATCAGCCACATTATAAGA
* * *
91480200 GCCAGTGTAAAACCATGTCTGAGACATGGCATCAG---CATTGAGACGAGA
1 GCTAGTGTAAGACCATGTCTGAGACATGGCATCAGCCACATT-ATA--AGA
* * * **
91480248 GCTAGTGTAATACCATGTCTGGGACATGGCATCAGCCTCGA-TATGTGA
1 GCTAGTGTAAGACCATGTCTGAGACATGGCATCAGCCAC-ATTATAAGA
* *
91480296 GCCAGTGTAAGACCATATCT-AGGACATGGCATC
1 GCTAGTGTAAGACCATGTCTGA-GACATGGCATC
91480329 GGTAATTTAC
Statistics
Matches: 221, Mismatches: 36, Indels: 32
0.76 0.12 0.11
Matches are distributed among these distances:
45 8 0.04
46 4 0.02
47 2 0.01
48 198 0.90
49 1 0.00
50 3 0.01
51 3 0.01
52 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGAGACATGGCATCAGCCACATTATAAGA
Found at i:91480162 original size:96 final size:96
Alignment explanation
Indices: 91479998--91480328 Score: 330
Period size: 96 Copynumber: 3.4 Consensus size: 96
91479988 GACATTTGGG
* * * *
91479998 TGATATGTGTGCTAGTGTAAGACCATGTATGGGACATGGCATCAGCCACATT-ATA--AGAGCTA
1 TGATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAG---TATTGATATGAGAGCTA
*
91480060 GTGTAAGACCATGTTTGAGACATGGCATCGGCAT
63 GTGTAAGACCATGTCTGAGACATGGCATCGGCAT
* * * * * *
91480094 TGATAGGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTGTTGATATGTGTGCTAGTG
1 TGATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGTATTGATATGAGAGCTAGTG
** *
91480159 TAAGACCATGTCTGAGACATGAAATCAGCCA-
66 TAAGACCATGTCTGAGACATGGCATC-GGCAT
* * * * * * *
91480190 -CATTATGAGAGCCAGTGTAAAACCATGTCTGAGACATGGCATCAGCATTGAGACGAGAGCTAGT
1 TGA-TATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGTATTGATATGAGAGCTAGT
* * * *
91480254 GTAATACCATGTCTGGGACATGGCATCAGCCT
65 GTAAGACCATGTCTGAGACATGGCATCGGCAT
* * *
91480286 CGATATGTGAGCCAGTGTAAGACCATATCTAGGACATGGCATC
1 TGATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
91480329 GGTAATTTAC
Statistics
Matches: 190, Mismatches: 38, Indels: 14
0.79 0.16 0.06
Matches are distributed among these distances:
93 2 0.01
94 3 0.02
95 2 0.01
96 179 0.94
97 4 0.02
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.25
Consensus pattern (96 bp):
TGATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGTATTGATATGAGAGCTAGTG
TAAGACCATGTCTGAGACATGGCATCGGCAT
Found at i:91480263 original size:144 final size:144
Alignment explanation
Indices: 91479998--91480311 Score: 457
Period size: 144 Copynumber: 2.2 Consensus size: 144
91479988 GACATTTGGG
* ** *
91479998 TGATATGTGTGCTAGTGTAAGACCATGTATGGGACATGGCATCAGCCACATTATAAGAGCTAGTG
1 TGATATGTGTGCTAGTGTAAGACCATGTATGAGACATGAAATCAGCCACATTATAAGAGCCAGTG
* * * * * *
91480063 TAAGACCATGTTTGAGACATGGCATCGGCATTGATAGGTGAGCTAGTGTAAGACCATGTCTGGGA
66 TAAAACCATGTCTGAGACATGGCATCAGCATTGAGACGAGAGCTAGTGTAAGACCATGTCTGGGA
* **
91480128 CATGGCATCGGTGT
131 CATGGCATCAGCCT
* *
91480142 TGATATGTGTGCTAGTGTAAGACCATGTCTGAGACATGAAATCAGCCACATTATGAGAGCCAGTG
1 TGATATGTGTGCTAGTGTAAGACCATGTATGAGACATGAAATCAGCCACATTATAAGAGCCAGTG
*
91480207 TAAAACCATGTCTGAGACATGGCATCAGCATTGAGACGAGAGCTAGTGTAATACCATGTCTGGGA
66 TAAAACCATGTCTGAGACATGGCATCAGCATTGAGACGAGAGCTAGTGTAAGACCATGTCTGGGA
91480272 CATGGCATCAGCCT
131 CATGGCATCAGCCT
* * *
91480286 CGATATGTGAGCCAGTGTAAGACCAT
1 TGATATGTGTGCTAGTGTAAGACCAT
91480312 ATCTAGGACA
Statistics
Matches: 151, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
144 151 1.00
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (144 bp):
TGATATGTGTGCTAGTGTAAGACCATGTATGAGACATGAAATCAGCCACATTATAAGAGCCAGTG
TAAAACCATGTCTGAGACATGGCATCAGCATTGAGACGAGAGCTAGTGTAAGACCATGTCTGGGA
CATGGCATCAGCCT
Found at i:91487196 original size:29 final size:29
Alignment explanation
Indices: 91487154--91487210 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
91487144 TTATGGAAGA
* * *
91487154 GATGGAGAACTTGTTCGTTGAGAGTTCGC
1 GATGAAGAACTTGTTCATTGAGAATTCGC
91487183 GATGAAGAACTTGTTCATTGAGAATTCG
1 GATGAAGAACTTGTTCATTGAGAATTCG
91487211 TGTCAAGGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.26, C:0.12, G:0.30, T:0.32
Consensus pattern (29 bp):
GATGAAGAACTTGTTCATTGAGAATTCGC
Found at i:91489740 original size:9 final size:11
Alignment explanation
Indices: 91489707--91489736 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
91489697 AATGTCACGA
*
91489707 TATATATAATT
1 TATATATAAGT
91489718 TATATATAAGT
1 TATATATAAGT
91489729 TATATATA
1 TATATATA
91489737 TTATGTTAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (11 bp):
TATATATAAGT
Found at i:91492545 original size:98 final size:95
Alignment explanation
Indices: 91492352--91492666 Score: 300
Period size: 94 Copynumber: 3.3 Consensus size: 95
91492342 ACGCCGACGC
* * * * *
91492352 CATGTCCCAGACATGGTCTTACACTGGCTAGTACATC-AAAT-TCGATGCCATGTCCCAGATAGG
1 CATGTCCCAGGCAT-GTCTTACACTAGCT-CT-CATCTTAATGTCGATGCCATGTCCCAGACAGG
*
91492415 TCTTACACT-GACTT-TCATATATCAAGGCCGATG
63 TCTTACACTAG-CTTGT-ATATCTCAAGGCCGATG
* * * ** * *
91492448 CCATGTCCCAGGCAGGTCTTATACTGGCTCTCATCTATCGGTGTCGATGCCACGTCCCAGCCAGG
1 -CATGTCCCAGGCATGTCTTACACTAGCTCTCATCT-T-AATGTCGATGCCATGTCCCAGACAGG
* *
91492513 TCTTACACTAGCTTGTATATCTCGAGGTCGATG
63 TCTTACACTAGCTTGTATATCTCAAGGCCGATG
* * * * * *
91492546 CATGT-CCTGGACATGTCTTACACTAGCTCTCGTCTTAATGCCAAT-ACATGTCCCAGACATGTC
1 CATGTCCCAGG-CATGTCTTACACTAGCTCTCATCTTAATGTCGATGCCATGTCCCAGACAGGTC
*
91492609 TTACACTAGCTAGTATATCTCAAGGCCGATG
65 TTACACTAGCTTGTATATCTCAAGGCCGATG
*
91492640 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGGCATGTCTTACACTAGC
91492667 ACACATATCA
Statistics
Matches: 179, Mismatches: 31, Indels: 19
0.78 0.14 0.08
Matches are distributed among these distances:
94 67 0.37
95 9 0.05
96 18 0.10
97 38 0.21
98 45 0.25
99 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (95 bp):
CATGTCCCAGGCATGTCTTACACTAGCTCTCATCTTAATGTCGATGCCATGTCCCAGACAGGTCT
TACACTAGCTTGTATATCTCAAGGCCGATG
Found at i:91492567 original size:48 final size:48
Alignment explanation
Indices: 91492352--91492666 Score: 205
Period size: 49 Copynumber: 6.6 Consensus size: 48
91492342 ACGCCGACGC
* * * ***
91492352 CATGTCCCAGACATGGTCTTACACTGGCTAGTACA--TCAAATTCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTTGTATATCTCAAGGCCGATG
* * *
91492399 CCATGTCCCAGATAGGTCTTACACT-GACTT-TCATATATCAAGGCCGATG
1 -CATGTCCCAGACATGTCTTACACTAG-CTTGT-ATATCTCAAGGCCGATG
* * * * * * * * *
91492448 CCATGTCCCAGGCAGGTCTTATACTGGCTCT-CATCTATC-GGTGTCGATG
1 -CATGTCCCAGACATGTCTTACACTAGCT-TGTATATCTCAAG-GCCGATG
* * * * *
91492497 CCACGTCCCAGCCAGGTCTTACACTAGCTTGTATATCTCGAGGTCGATG
1 -CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
** * ** * * * *
91492546 CATGTCCTGGACATGTCTTACACTAGC-TCT-CGTCTTAATGCCAATA
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
*
91492592 CATGTCCCAGACATGTCTTACACTAGCTAGTATATCTCAAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
91492640 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
91492667 ACACATATCA
Statistics
Matches: 210, Mismatches: 46, Indels: 22
0.76 0.17 0.08
Matches are distributed among these distances:
46 35 0.17
47 17 0.08
48 73 0.35
49 82 0.39
50 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
Found at i:91492607 original size:46 final size:48
Alignment explanation
Indices: 91492501--91492666 Score: 156
Period size: 48 Copynumber: 3.5 Consensus size: 48
91492491 TCGATGCCAC
* * ** * * * * *
91492501 GTCCCAGCCAGGTCTTACACTAGCTTGTATATCTCGAGGTCGATGCAT
1 GTCCCAGACATGTCTTACACTAGCTACTACATCTCAAGGCCAATACAT
** * * *
91492549 GTCCTGGACATGTCTTACACTAGCT-CT-CGTCTTAATGCCAATACAT
1 GTCCCAGACATGTCTTACACTAGCTACTACATCTCAAGGCCAATACAT
* * * *
91492595 GTCCCAGACATGTCTTACACTAGCTAGTATATCTCAAGGCCGATGCAT
1 GTCCCAGACATGTCTTACACTAGCTACTACATCTCAAGGCCAATACAT
91492643 GTCCCAGACATGTCTTACACTAGC
1 GTCCCAGACATGTCTTACACTAGC
91492667 ACACATATCA
Statistics
Matches: 94, Mismatches: 22, Indels: 4
0.78 0.18 0.03
Matches are distributed among these distances:
46 34 0.36
47 2 0.02
48 58 0.62
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (48 bp):
GTCCCAGACATGTCTTACACTAGCTACTACATCTCAAGGCCAATACAT
Found at i:91496054 original size:19 final size:19
Alignment explanation
Indices: 91496030--91496069 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
91496020 GAAGCATCCA
91496030 AGCTCGTTGAGTTGGTCCG
1 AGCTCGTTGAGTTGGTCCG
91496049 AGCTCGTTGAGTTGGTCCG
1 AGCTCGTTGAGTTGGTCCG
91496068 AG
1 AG
91496070 TTCATTTTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.12, C:0.20, G:0.38, T:0.30
Consensus pattern (19 bp):
AGCTCGTTGAGTTGGTCCG
Found at i:91499034 original size:48 final size:48
Alignment explanation
Indices: 91498976--91499697 Score: 1291
Period size: 48 Copynumber: 15.0 Consensus size: 48
91498966 ATATACACAC
* *
91498976 ATCTCCTACATATTTCACACTAGCCATTCAGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
91499024 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
91499072 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
91499120 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
91499168 ATCTCATTCATATTTCAAACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
91499216 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
91499264 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
91499312 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
91499360 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACACATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
91499408 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
91499456 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
91499504 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
91499552 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
91499600 ATCTCATACATATTTCACACTAGCCATTCAGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
91499648 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
91499696 AT
1 AT
91499698 ATATTTATCT
Statistics
Matches: 651, Mismatches: 23, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 651 1.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:91506766 original size:58 final size:57
Alignment explanation
Indices: 91506699--91506840 Score: 135
Period size: 57 Copynumber: 2.5 Consensus size: 57
91506689 TATGTTGTAA
* * * * * *
91506699 ATAGAATTTAGCCTGGACAGGTAATTCTAATGTAAGCACTCTT-GAGCTTATGTTATAG
1 ATAGGATTTAGCCTGGACAGGTAATCCAAAT-TAAGCACT-TTAGAGCATATGCTACAG
* ** * * *
91506757 ATTGGATTTAGCCCAGACGGGTAATCCAAATTAAGCTCTTTAGAGCATATGCTACGG
1 ATAGGATTTAGCCTGGACAGGTAATCCAAATTAAGCACTTTAGAGCATATGCTACAG
91506814 ATAGGATTTAGCCTGGACTA-GTAATCC
1 ATAGGATTTAGCCTGGAC-AGGTAATCC
91506841 TGCTGTAAAA
Statistics
Matches: 66, Mismatches: 16, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
56 2 0.03
57 40 0.61
58 24 0.36
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (57 bp):
ATAGGATTTAGCCTGGACAGGTAATCCAAATTAAGCACTTTAGAGCATATGCTACAG
Found at i:91510416 original size:17 final size:17
Alignment explanation
Indices: 91510394--91510432 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
91510384 GTGTCATTGA
91510394 GTTAGTATTAAAGTTTC
1 GTTAGTATTAAAGTTTC
91510411 GTTAGTATTAAAGTTTC
1 GTTAGTATTAAAGTTTC
91510428 GTTAG
1 GTTAG
91510433 GAAATTTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.28, C:0.05, G:0.21, T:0.46
Consensus pattern (17 bp):
GTTAGTATTAAAGTTTC
Found at i:91512688 original size:37 final size:37
Alignment explanation
Indices: 91512629--91512727 Score: 126
Period size: 37 Copynumber: 2.7 Consensus size: 37
91512619 ACTGGTATAT
* * * *
91512629 ATATATTGAAAGGTGTCTTGGAAATGATATTTAATTG
1 ATATATTGAAAAGTGACATGGAAATGATATTTAATTA
* *
91512666 ATATATTGAAATGTGACATGGAAATGATATTTATTTA
1 ATATATTGAAAAGTGACATGGAAATGATATTTAATTA
* *
91512703 ATATATTAAAAAGTGACATGTAAAT
1 ATATATTGAAAAGTGACATGGAAAT
91512728 ATGTGATTAT
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 54 1.00
ACGTcount: A:0.41, C:0.03, G:0.17, T:0.38
Consensus pattern (37 bp):
ATATATTGAAAAGTGACATGGAAATGATATTTAATTA
Found at i:91523223 original size:27 final size:27
Alignment explanation
Indices: 91523193--91523246 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
91523183 CGACTGGTGT
91523193 GTTGCAGCACAAGGGGACTTATTCCCC
1 GTTGCAGCACAAGGGGACTTATTCCCC
91523220 GTTGCAGCACAAGGGGACTTATTCCCC
1 GTTGCAGCACAAGGGGACTTATTCCCC
91523247 TTTGAATGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.22
Consensus pattern (27 bp):
GTTGCAGCACAAGGGGACTTATTCCCC
Found at i:91532562 original size:13 final size:13
Alignment explanation
Indices: 91532544--91532569 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
91532534 CCCGGATAAT
91532544 TGAATTATTGAAG
1 TGAATTATTGAAG
91532557 TGAATTATTGAAG
1 TGAATTATTGAAG
91532570 ATGTGAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.38
Consensus pattern (13 bp):
TGAATTATTGAAG
Found at i:91537107 original size:20 final size:20
Alignment explanation
Indices: 91537082--91537122 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
91537072 CTTTATATAT
91537082 TTTTTAGAATTTTTTTAAAA
1 TTTTTAGAATTTTTTTAAAA
* *
91537102 TTTTTATATTTTTTTTAAAA
1 TTTTTAGAATTTTTTTAAAA
91537122 T
1 T
91537123 ATAAATTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (20 bp):
TTTTTAGAATTTTTTTAAAA
Found at i:91537142 original size:22 final size:20
Alignment explanation
Indices: 91537114--91537159 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
91537104 TTTATATTTT
91537114 TTTTAAAATATAAATTTTGGAA
1 TTTTAAAA-AT-AATTTTGGAA
* *
91537136 TTTTAAAAATTATTTTGTAA
1 TTTTAAAAATAATTTTGGAA
91537156 TTTT
1 TTTT
91537160 TGTTGAGAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 12 0.55
21 2 0.09
22 8 0.36
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (20 bp):
TTTTAAAAATAATTTTGGAA
Found at i:91537647 original size:19 final size:19
Alignment explanation
Indices: 91537620--91537656 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
91537610 GTTTATTTAT
*
91537620 GTCATTCTTATTAAAAATG
1 GTCACTCTTATTAAAAATG
*
91537639 GTCACTCTTCTTAAAAAT
1 GTCACTCTTATTAAAAAT
91537657 TCTAATAGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.35, C:0.16, G:0.08, T:0.41
Consensus pattern (19 bp):
GTCACTCTTATTAAAAATG
Found at i:91537787 original size:12 final size:12
Alignment explanation
Indices: 91537770--91537794 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
91537760 GGATTAAAAT
91537770 ATAATTTGCCCG
1 ATAATTTGCCCG
91537782 ATAATTTGCCCG
1 ATAATTTGCCCG
91537794 A
1 A
91537795 ATATTAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (12 bp):
ATAATTTGCCCG
Found at i:91538153 original size:38 final size:38
Alignment explanation
Indices: 91538102--91538177 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
91538092 TATTATCCTC
91538102 AATAACTCCATTAAAGAAGAAACAACTCAAAACACCAT
1 AATAACTCCATTAAAGAAGAAACAACTCAAAACACCAT
91538140 AATAACTCCATTAAAGAAGAAACAACTCAAAACACCAT
1 AATAACTCCATTAAAGAAGAAACAACTCAAAACACCAT
91538178 CAATCGGATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.55, C:0.24, G:0.05, T:0.16
Consensus pattern (38 bp):
AATAACTCCATTAAAGAAGAAACAACTCAAAACACCAT
Found at i:91540416 original size:29 final size:27
Alignment explanation
Indices: 91540350--91540416 Score: 71
Period size: 31 Copynumber: 2.3 Consensus size: 27
91540340 GAGTTTCACG
* *
91540350 TGTATAATTGCACCAAATTAAAGTTTA
1 TGTATAATTGCACCAAATCAAAGTTCA
*
91540377 TGTATCGAATTGCACATTAAATCAAAGTTCA
1 TGTAT--AATTGCAC--CAAATCAAAGTTCA
91540408 TGTATAATT
1 TGTATAATT
91540417 TTGAGATTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
27 5 0.15
29 12 0.36
31 16 0.48
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37
Consensus pattern (27 bp):
TGTATAATTGCACCAAATCAAAGTTCA
Found at i:91542707 original size:15 final size:15
Alignment explanation
Indices: 91542687--91542717 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
91542677 AAGGGTACAG
91542687 AGAGGAAAAAAGGAA
1 AGAGGAAAAAAGGAA
91542702 AGAGGAAAAAAGGAA
1 AGAGGAAAAAAGGAA
91542717 A
1 A
91542718 TTTTTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (15 bp):
AGAGGAAAAAAGGAA
Found at i:91544413 original size:21 final size:21
Alignment explanation
Indices: 91544387--91544434 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
91544377 ACTGGGTGGA
91544387 TCAGCTCTCAAAAGCTTCTGT
1 TCAGCTCTCAAAAGCTTCTGT
* *
91544408 TCAGCTCTTATAAGCTTCTGT
1 TCAGCTCTCAAAAGCTTCTGT
*
91544429 TTAGCT
1 TCAGCT
91544435 TTCGAGCTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.40
Consensus pattern (21 bp):
TCAGCTCTCAAAAGCTTCTGT
Found at i:91545378 original size:25 final size:25
Alignment explanation
Indices: 91545344--91545393 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
91545334 TGCATACAAG
91545344 TTAGGCTATTACATGGCCTGACATA
1 TTAGGCTATTACATGGCCTGACATA
*
91545369 TTAGGCTATTACATGGCCTGGCATA
1 TTAGGCTATTACATGGCCTGACATA
91545394 CTGGCGTGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (25 bp):
TTAGGCTATTACATGGCCTGACATA
Found at i:91547581 original size:25 final size:22
Alignment explanation
Indices: 91547538--91547583 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
91547528 AGGTTAAATT
*
91547538 AGTAAATTAATAAATAAGTTAA
1 AGTAAATTAATAAAAAAGTTAA
91547560 AGTAAATTGACATAAACAAAGTTA
1 AGTAAATT-A-ATAAA-AAAGTTA
91547584 TCATTATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 8 0.40
23 1 0.05
24 5 0.25
25 6 0.30
ACGTcount: A:0.57, C:0.04, G:0.11, T:0.28
Consensus pattern (22 bp):
AGTAAATTAATAAAAAAGTTAA
Found at i:91548073 original size:8 final size:8
Alignment explanation
Indices: 91548059--91548107 Score: 71
Period size: 8 Copynumber: 6.1 Consensus size: 8
91548049 AATATTAGGG
91548059 GTAAAATT
1 GTAAAATT
*
91548067 ATAAAATT
1 GTAAAATT
91548075 GTAAAATT
1 GTAAAATT
91548083 GTAAAATT
1 GTAAAATT
*
91548091 GTAAAACT
1 GTAAAATT
*
91548099 ATAAAATT
1 GTAAAATT
91548107 G
1 G
91548108 CCATAATATA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 35 1.00
ACGTcount: A:0.53, C:0.02, G:0.10, T:0.35
Consensus pattern (8 bp):
GTAAAATT
Found at i:91548080 original size:16 final size:16
Alignment explanation
Indices: 91548059--91548107 Score: 80
Period size: 16 Copynumber: 3.1 Consensus size: 16
91548049 AATATTAGGG
91548059 GTAAAATTATAAAATT
1 GTAAAATTATAAAATT
*
91548075 GTAAAATTGTAAAATT
1 GTAAAATTATAAAATT
*
91548091 GTAAAACTATAAAATT
1 GTAAAATTATAAAATT
91548107 G
1 G
91548108 CCATAATATA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.53, C:0.02, G:0.10, T:0.35
Consensus pattern (16 bp):
GTAAAATTATAAAATT
Found at i:91551028 original size:48 final size:48
Alignment explanation
Indices: 91550967--91551186 Score: 174
Period size: 48 Copynumber: 4.6 Consensus size: 48
91550957 TGATATGTGT
* * * * *
91550967 GCCAGTGTAAGACCATGTCTGGGATATGGCATCGACATTGATATGTGT
1 GCCAGTGAAAGACCATGTCTGGGACATGGCATCGACATTAATATGAGA
* * * * * *
91551015 GCTAGAGAAAGACCATGTCTGGGACATGGCATTGGCCA-CAACATGAGA
1 GCCAGTGAAAGACCATGTCTGGGACATGGCA-TCGACATTAATATGAGA
* * * *
91551063 GCCAGTGTAAA-ACCATGTCTGGGATATGGCATCGGCATTAAGACGAGA
1 GCCAGTG-AAAGACCATGTCTGGGACATGGCATCGACATTAATATGAGA
* * * * ** * *
91551111 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACATGTGA
1 GCCAGTGAAAGACCATGTCTGGGACATGGCATCGACATTAATATGAGA
* * *
91551159 GCCAGTGTAAGACCATGTTTGGAACATG
1 GCCAGTGAAAGACCATGTCTGGGACATG
91551187 TTTGGAACAT
Statistics
Matches: 137, Mismatches: 31, Indels: 8
0.78 0.18 0.05
Matches are distributed among these distances:
47 6 0.04
48 124 0.91
49 7 0.05
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (48 bp):
GCCAGTGAAAGACCATGTCTGGGACATGGCATCGACATTAATATGAGA
Found at i:91551131 original size:96 final size:96
Alignment explanation
Indices: 91550967--91551176 Score: 303
Period size: 96 Copynumber: 2.2 Consensus size: 96
91550957 TGATATGTGT
* * * * *
91550967 GCCAGTGTAAGACCATGTCTGGGATATGGCATCGACATTGATATGTGTGCTAGAGAAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGATATGGCATCGACATTAAGACGAGAGCTAGAGAAAGACCATG
*
91551032 TCTGGGACATGGCATTGGCCACAACATGAGA
66 TCTGGGACATGGCATCGGCCACAACATGAGA
* * * *
91551063 GCCAGTGTAAAACCATGTCTGGGATATGGCATCGGCATTAAGACGAGAGCTAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGATATGGCATCGACATTAAGACGAGAGCTAGAGAAAGACCATG
* * *
91551128 TCTGGGACATGGCATCGGCCTCGACATGTGA
66 TCTGGGACATGGCATCGGCCACAACATGAGA
91551159 GCCAGTGTAAGACCATGT
1 GCCAGTGTAAGACCATGT
91551177 TTGGAACATG
Statistics
Matches: 100, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
96 100 1.00
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (96 bp):
GCCAGTGTAAGACCATGTCTGGGATATGGCATCGACATTAAGACGAGAGCTAGAGAAAGACCATG
TCTGGGACATGGCATCGGCCACAACATGAGA
Found at i:91551188 original size:11 final size:11
Alignment explanation
Indices: 91551172--91551197 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
91551162 AGTGTAAGAC
91551172 CATGTTTGGAA
1 CATGTTTGGAA
91551183 CATGTTTGGAA
1 CATGTTTGGAA
91551194 CATG
1 CATG
91551198 GAATCGGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.35
Consensus pattern (11 bp):
CATGTTTGGAA
Found at i:91574574 original size:43 final size:43
Alignment explanation
Indices: 91574475--91574576 Score: 116
Period size: 43 Copynumber: 2.4 Consensus size: 43
91574465 TGGGATTCAG
91574475 CCCAGACGAGTAATCCATTAATCTCAGTATGGAATGGATTTAA
1 CCCAGACGAGTAATCCATTAATCTCAGTATGGAATGGATTTAA
* * * * * * *
91574518 CCTAGATGGGTAATCCATTGATTTCAGTATATGAA-GGATTTAT
1 CCCAGACGAGTAATCCATTAATCTCAGTAT-GGAATGGATTTAA
*
91574561 CCCGGACGAGTAATCC
1 CCCAGACGAGTAATCC
91574577 CAAGTTGAAC
Statistics
Matches: 47, Mismatches: 11, Indels: 2
0.78 0.18 0.03
Matches are distributed among these distances:
43 44 0.94
44 3 0.06
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (43 bp):
CCCAGACGAGTAATCCATTAATCTCAGTATGGAATGGATTTAA
Found at i:91580177 original size:27 final size:27
Alignment explanation
Indices: 91580146--91580323 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
91580136 TAAATTGTAC
91580146 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
91580173 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
91580199 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
91580227 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
91580255 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
91580282 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
91580309 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
91580324 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:91580260 original size:82 final size:81
Alignment explanation
Indices: 91580147--91580302 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
91580137 AAATTGTACA
* *
91580147 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
91580211 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
91580228 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
91580293 TGCGAGTTGA
65 TGCGAATTGA
91580303 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:91580314 original size:82 final size:81
Alignment explanation
Indices: 91580143--91580323 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
91580133 GATTAAATTG
* *
91580143 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
91580208 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
91580224 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
91580288 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
91580306 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
91580324 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:91586504 original size:27 final size:27
Alignment explanation
Indices: 91586473--91586650 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
91586463 TAAATTGTAC
91586473 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
91586500 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
91586526 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
91586554 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
91586582 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
91586609 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
91586636 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
91586651 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:91586587 original size:82 final size:81
Alignment explanation
Indices: 91586474--91586629 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
91586464 AAATTGTACA
* *
91586474 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
91586538 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
91586555 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
91586620 TGCGAGTTGA
65 TGCGAATTGA
91586630 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:91586641 original size:82 final size:81
Alignment explanation
Indices: 91586470--91586650 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
91586460 GATTAAATTG
* *
91586470 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
91586535 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
91586551 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
91586615 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
91586633 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
91586651 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:91590471 original size:21 final size:21
Alignment explanation
Indices: 91590446--91590492 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
91590436 GGACACGGTC
91590446 TGGCCATACGGGCGTGTGGTA
1 TGGCCATACGGGCGTGTGGTA
91590467 TGGCCATACGGGCGTGTGGTA
1 TGGCCATACGGGCGTGTGGTA
*
91590488 CGGCC
1 TGGCC
91590493 GTGTGACCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.43, T:0.21
Consensus pattern (21 bp):
TGGCCATACGGGCGTGTGGTA
Found at i:91593637 original size:21 final size:21
Alignment explanation
Indices: 91593613--91593688 Score: 55
Period size: 21 Copynumber: 3.5 Consensus size: 21
91593603 CTAGGAACTA
91593613 TGTGATCTGAACTCATTGAGT
1 TGTGATCTGAACTCATTGAGT
* ** *
91593634 TGTGGTCTGAGTTCA-TGATAT
1 TGTGATCTGAACTCATTGA-GT
91593655 ATGTGGCATCTGAACTCATTGAGT
1 -TGT-G-ATCTGAACTCATTGAGT
* *
91593679 TATGGTCTGA
1 TGTGATCTGA
91593689 GTTCATAATG
Statistics
Matches: 40, Mismatches: 10, Indels: 10
0.67 0.17 0.17
Matches are distributed among these distances:
20 3 0.08
21 18 0.45
22 4 0.10
23 3 0.08
24 9 0.22
25 3 0.08
ACGTcount: A:0.22, C:0.13, G:0.26, T:0.38
Consensus pattern (21 bp):
TGTGATCTGAACTCATTGAGT
Found at i:91594212 original size:16 final size:16
Alignment explanation
Indices: 91594191--91594226 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
91594181 ATTTACAAAG
91594191 CTTTAAAGCTTACCCC
1 CTTTAAAGCTTACCCC
*
91594207 CTTTAAAGCTTACCCT
1 CTTTAAAGCTTACCCC
91594223 CTTT
1 CTTT
91594227 CCTTTCTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.22, C:0.33, G:0.06, T:0.39
Consensus pattern (16 bp):
CTTTAAAGCTTACCCC
Found at i:91597895 original size:47 final size:47
Alignment explanation
Indices: 91597826--91597920 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
91597816 ACTAAAAAAT
91597826 CACAAACGTTGCGCGTGTCGTGCCTCGAACCCAGGCACCTCCCACGC
1 CACAAACGTTGCGCGTGTCGTGCCTCGAACCCAGGCACCTCCCACGC
91597873 CACAAACGTTGCGCGTGTCGTGCCTCGAACCCAGGCACCTCCCACGC
1 CACAAACGTTGCGCGTGTCGTGCCTCGAACCCAGGCACCTCCCACGC
91597920 C
1 C
91597921 CCCTAGCGTG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.19, C:0.43, G:0.23, T:0.15
Consensus pattern (47 bp):
CACAAACGTTGCGCGTGTCGTGCCTCGAACCCAGGCACCTCCCACGC
Found at i:91600598 original size:53 final size:53
Alignment explanation
Indices: 91600429--91600624 Score: 194
Period size: 53 Copynumber: 3.6 Consensus size: 53
91600419 AAGGTACCAA
* * * * * *
91600429 GTAAGACCATGTCAAGGCAAGGCATTGGTAAGTTTTACAAGGCAAGGAAATCAT
1 GTAAGACCATGTCAAGACATGGCAATGGTAAG-TTCATAAGGCAAGGATATCAT
* * * * * * * **
91600483 GTAAGACCATGTCAAGACATCGCATTGATAAACTACGATAAGGAAAAGATCCCAT
1 GTAAGACCATGTCAAGACATGGCAATGGT-AAGTTC-ATAAGGCAAGGATATCAT
* * * *
91600538 GTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGCAAGGATATCAC
1 GTAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAAGGCAAGGATATCAT
91600591 GTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 GTAAGACCATGTCAAGACATGGCAATGGTAAGTT
91600625 TAAAAAGGAA
Statistics
Matches: 111, Mismatches: 29, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
53 44 0.40
54 29 0.26
55 38 0.34
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.21
Consensus pattern (53 bp):
GTAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAAGGCAAGGATATCAT
Found at i:91606288 original size:28 final size:29
Alignment explanation
Indices: 91606221--91606288 Score: 120
Period size: 29 Copynumber: 2.4 Consensus size: 29
91606211 GTGTGCAAGT
*
91606221 CTAAGTGTGCGAGTTTGATTATGTAAGCA
1 CTAAGTGTGCGAGTTTGATTATATAAGCA
91606250 CTAAGTGTGCGAGTTTGATTATATAA-CA
1 CTAAGTGTGCGAGTTTGATTATATAAGCA
91606278 CTAAGTGTGCG
1 CTAAGTGTGCG
91606289 GACTTACTAT
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
28 13 0.34
29 25 0.66
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.34
Consensus pattern (29 bp):
CTAAGTGTGCGAGTTTGATTATATAAGCA
Found at i:91611886 original size:47 final size:47
Alignment explanation
Indices: 91611823--91612324 Score: 710
Period size: 47 Copynumber: 10.6 Consensus size: 47
91611813 CCCTTCGGGA
* * *
91611823 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
91611870 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGG-
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
91611916 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
91611963 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
91612010 CTTATCACATATATATACACTTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
91612059 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
91612106 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
91612153 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
91612200 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
91612249 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
91612298 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
91612325 TATTCAAATA
Statistics
Matches: 422, Mismatches: 24, Indels: 18
0.91 0.05 0.04
Matches are distributed among these distances:
45 1 0.00
46 43 0.10
47 246 0.58
49 130 0.31
50 2 0.00
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:91612107 original size:143 final size:141
Alignment explanation
Indices: 91611823--91612324 Score: 744
Period size: 143 Copynumber: 3.5 Consensus size: 141
91611813 CCCTTCGGGA
* * *
91611823 CTTATCACATTTATACACT-TCCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACA
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
91611887 CTTTCACATTCATCACATTGGCCATTCGG-CTTATCTCATATATGCATGTTCACATTCATCACAT
65 CTTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACAT
91611951 TGGCCATTCGGC
130 TGGCCATTCGGC
* *
91611963 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
*
91612028 ACTTTCACATTCATCACATTGGTCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACA
64 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACA
91612093 TTGGCCATTCGGC
129 TTGGCCATTCGGC
* * * *
91612106 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACA-
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
* *
91612170 TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACT-TTCACATTCATCA
66 T-TTCACATTCATCACATTGGCCATTCGGCCTTATCTC--ATATATGCA-TGTTCACATTCATCA
* *
91612234 CATCGGCCATTAGGC
127 CATTGGCCATTCGGC
*
91612249 CTTATCACATATATATACACT-TTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
1 CTTATCAC--ATATATACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATA
91612313 CACTTTCACATT
63 CACTTTCACATT
91612325 TATTCAAATA
Statistics
Matches: 328, Mismatches: 22, Indels: 19
0.89 0.06 0.05
Matches are distributed among these distances:
139 1 0.00
140 49 0.15
141 41 0.12
142 37 0.11
143 139 0.42
144 1 0.00
145 58 0.18
146 2 0.01
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (141 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATT
GGCCATTCGGC
Found at i:91612174 original size:190 final size:190
Alignment explanation
Indices: 91611823--91612324 Score: 843
Period size: 190 Copynumber: 2.6 Consensus size: 190
91611813 CCCTTCGGGA
* *
91611823 CTTATCACAT-T-TATACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
91611886 ACTTTCACATTCATCACATTGGCCATTCGG-CTTATCTCATATATGCATGTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACA
91611950 TTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
131 TTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
* * *
91612010 CTTATCACATATATATACACTTTCACATTCATCACATTGGTCATTCGGCCTTATCTCATATATGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
91612075 A-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCAC
66 ACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCAC
91612139 ATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
130 ATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
* *
91612200 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATAT
* * *
91612265 ACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACT-TTCACATT
64 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCA-TGTTCACATT
91612325 TATTCAAATA
Statistics
Matches: 294, Mismatches: 13, Indels: 11
0.92 0.04 0.03
Matches are distributed among these distances:
187 10 0.03
188 2 0.01
189 75 0.26
190 147 0.50
192 58 0.20
193 2 0.01
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (190 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACA
TTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:91613839 original size:56 final size:56
Alignment explanation
Indices: 91613772--91613891 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
91613762 TATTAGTTTA
91613772 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
91613828 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
91613884 TTGCCCAT
1 TTGCCCAT
91613892 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:91625568 original size:6 final size:6
Alignment explanation
Indices: 91625550--91625657 Score: 53
Period size: 6 Copynumber: 17.3 Consensus size: 6
91625540 AAGAAACATT
* * * *
91625550 ATCAGA A-CTAGA ATCAGA ATCAGA ATTAG- GTGACAAA ATCAGA ATCAGT
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
* * *
91625599 ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAAA
1 ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATC-AGA
91625650 ATCAGA AT
1 ATCAGA AT
91625658 GTGAATACAA
Statistics
Matches: 76, Mismatches: 14, Indels: 24
0.67 0.12 0.21
Matches are distributed among these distances:
5 6 0.08
6 54 0.71
7 13 0.17
8 3 0.04
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:91625589 original size:25 final size:25
Alignment explanation
Indices: 91625561--91625628 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
91625551 TCAGAACTAG
* *
91625561 AATCAGAATCAGAATTAGGTGACAA
1 AATCAGAATCAGAATCAGGTAACAA
* *
91625586 AATCAGAATCAGTATCAGGTAACAG
1 AATCAGAATCAGAATCAGGTAACAA
*
91625611 AATCAAAATCAGAATCAG
1 AATCAGAATCAGAATCAG
91625629 TATCAGGTAA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.19
Consensus pattern (25 bp):
AATCAGAATCAGAATCAGGTAACAA
Found at i:91625611 original size:19 final size:19
Alignment explanation
Indices: 91625589--91625646 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
91625579 GTGACAAAAT
91625589 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
*
91625608 CAGAATCA--A--A---AT
1 CAGAATCAGTATCAGGTAA
91625620 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
91625639 CAGAATCA
1 CAGAATCA
91625647 AAAATCAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 9 0.30
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
19 17 0.57
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (19 bp):
CAGAATCAGTATCAGGTAA
Found at i:91625618 original size:31 final size:31
Alignment explanation
Indices: 91625583--91625657 Score: 141
Period size: 31 Copynumber: 2.4 Consensus size: 31
91625573 AATTAGGTGA
91625583 CAAAATCAGAATCAGTATCAGGTAACAGAAT
1 CAAAATCAGAATCAGTATCAGGTAACAGAAT
91625614 CAAAATCAGAATCAGTATCAGGTAACAGAAT
1 CAAAATCAGAATCAGTATCAGGTAACAGAAT
91625645 CAAAAATCAGAAT
1 C-AAAATCAGAAT
91625658 GTGAATACAA
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
31 32 0.74
32 11 0.26
ACGTcount: A:0.51, C:0.16, G:0.15, T:0.19
Consensus pattern (31 bp):
CAAAATCAGAATCAGTATCAGGTAACAGAAT
Found at i:91625645 original size:25 final size:25
Alignment explanation
Indices: 91625533--91625646 Score: 88
Period size: 25 Copynumber: 4.4 Consensus size: 25
91625523 TTAACCCATT
* * *
91625533 ACAGAATAAGAAACATTATCA-G-A
1 ACAGAATCAGAATCAGTATCAGGTA
* * *
91625556 ACTAGAATCAGAATCAGAATTAGGTG
1 AC-AGAATCAGAATCAGTATCAGGTA
*
91625582 ACAAAATCAGAATCAGTATCAGGTA
1 ACAGAATCAGAATCAGTATCAGGTA
91625607 ACAGAATCAAAATCAGAATCAGTATCAGGTA
1 ACAG------AATCAGAATCAGTATCAGGTA
91625638 ACAGAATCA
1 ACAGAATCA
91625647 AAAATCAGAA
Statistics
Matches: 71, Mismatches: 11, Indels: 16
0.72 0.11 0.16
Matches are distributed among these distances:
23 2 0.03
24 14 0.20
25 28 0.39
26 2 0.03
31 25 0.35
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.19
Consensus pattern (25 bp):
ACAGAATCAGAATCAGTATCAGGTA
Found at i:91625836 original size:27 final size:26
Alignment explanation
Indices: 91625797--91625888 Score: 103
Period size: 27 Copynumber: 3.4 Consensus size: 26
91625787 CAGTTATCAA
* * *
91625797 ATATTGTGACAGAGTCACCTGATACAG
1 ATATTGTGGCAGAGACACCAGA-ACAG
91625824 ATATTGTGGCAGAGACACCAGAACAG
1 ATATTGTGGCAGAGACACCAGAACAG
* *
91625850 ATATTTGTGGCATAGCCACCAGAAACAG
1 ATA-TTGTGGCAGAGACACCAG-AACAG
*
91625878 ATAATGTGGCA
1 ATATTGTGGCA
91625889 AAGCCACTTA
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
26 7 0.12
27 42 0.74
28 8 0.14
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (26 bp):
ATATTGTGGCAGAGACACCAGAACAG
Found at i:91626082 original size:22 final size:22
Alignment explanation
Indices: 91626054--91626118 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
91626044 GCAAATACGT
*
91626054 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
91626076 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
91626098 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
91626119 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:91626602 original size:27 final size:27
Alignment explanation
Indices: 91626546--91626847 Score: 333
Period size: 27 Copynumber: 11.2 Consensus size: 27
91626536 GGGCAAAATG
* * * * *
91626546 GTAATTTTACCCCACA-AGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
91626572 GTAATTCCACCCTACAGGAGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
91626599 GTAATTCTACCCTACAGGGGTA-TTCGG
1 GTAATTCTACCCTACAGGGGTATTTC-A
91626626 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
** * *
91626653 GTAATTCTACCCTATTGCGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
91626680 GTATTTTTACCCTACAGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
91626706 GATATTTCTACCCTACAGGGGTATCTCG
1 G-TAATTCTACCCTACAGGGGTATTTCA
* * *
91626734 GTAATTCCACCCTACAGGAGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
91626761 GTAATTCTACCCTACAGGGGTA-TTCGG
1 GTAATTCTACCCTACAGGGGTATTTC-A
91626788 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
91626815 GTAATTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
91626842 GTAATT
1 GTAATT
91626848 TTGTAAATAG
Statistics
Matches: 232, Mismatches: 37, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
26 18 0.08
27 207 0.89
28 7 0.03
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:91626676 original size:81 final size:81
Alignment explanation
Indices: 91626545--91626839 Score: 382
Period size: 81 Copynumber: 3.7 Consensus size: 81
91626535 GGGGCAAAAT
* * * * * *
91626545 GGTAATTTTACCCCACA-AGGTATCTCGGTAATTCCACCCTACAGGAGTATTTTAGTAATTCTAC
1 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGAGTATTTTAGTAATTCTAC
91626609 CCTACAGGGGTATTCG
66 CCTACAGGGGTATTCG
** ** * *
91626625 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATTGCG-GTATTTCGGTATTTTTA
1 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAG-GAGTATTTTAGTAATTCTA
91626689 CCCTACAGGGGTATTTC-
65 CCCTACAGGGGTA-TTCG
* * * * *
91626706 GATATTTCTACCCTACAGGGGTATCTCGGTAATTCCACCCTACAGGAGTATTTTAGTAATTCTAC
1 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGAGTATTTTAGTAATTCTAC
91626771 CCTACAGGGGTATTCG
66 CCTACAGGGGTATTCG
91626787 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGG-GTATTT
1 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTAC-AGGAGTATTT
91626840 CGGTAATTTT
Statistics
Matches: 181, Mismatches: 28, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
80 19 0.10
81 155 0.86
82 7 0.04
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.34
Consensus pattern (81 bp):
GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGAGTATTTTAGTAATTCTAC
CCTACAGGGGTATTCG
Found at i:91626863 original size:54 final size:54
Alignment explanation
Indices: 91626546--91626847 Score: 387
Period size: 54 Copynumber: 5.6 Consensus size: 54
91626536 GGGCAAAATG
* * * * * * *
91626546 GTAATTTTACCCCACA-AGGTATCTCGGTAATTCCACCCTACAGGAGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
91626599 GTAATTCTACCCTACAGGGGTA-TTCGGGTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTC-GGTAATTCTACCCTACAGGGGTATTTCA
** * * *
91626653 GTAATTCTACCCTATTGCGGTATTTCGGTATTTTTACCCTACAGGGGTATTTC-
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
* * * * *
91626706 GATATTTCTACCCTACAGGGGTATCTCGGTAATTCCACCCTACAGGAGTATTTTA
1 G-TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
91626761 GTAATTCTACCCTACAGGGGTA-TTCGGGTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTC-GGTAATTCTACCCTACAGGGGTATTTCA
*
91626815 GTAATTCTACCCTACAAGGGTATTTCGGTAATT
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATT
91626848 TTGTAAATAG
Statistics
Matches: 214, Mismatches: 28, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
53 19 0.09
54 188 0.88
55 7 0.03
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (54 bp):
GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
Found at i:91626916 original size:27 final size:27
Alignment explanation
Indices: 91626886--91627189 Score: 227
Period size: 27 Copynumber: 11.3 Consensus size: 27
91626876 TGTAAATCAG
* *
91626886 GGGTACTTTT-GTAATTTTACAAGTCGA
1 GGGTA-TTTTAGTAATTTTACAAGACAA
* * * ***
91626913 GGGTATTTCAATAA-TTTACAGGTTGA
1 GGGTATTTTAGTAATTTTACAAGACAA
* * * *
91626939 GGGTATTTCAGTAATTTCACAAGTCAG
1 GGGTATTTTAGTAATTTTACAAGACAA
* *
91626966 GGGTATTTTGGTAATTTTACAA-ACTAG
1 GGGTATTTTAGTAATTTTACAAGAC-AA
91626993 GGGTATTTT-GATAATTTTACAA-ACAA
1 GGGTATTTTAG-TAATTTTACAAGACAA
*
91627019 GGGGTATTTTAGTAATTTTACAAG-CTAG
1 -GGGTATTTTAGTAATTTTACAAGAC-AA
*
91627047 GGGTATTTT-GATAATTTTATAA-ACAAA
1 GGGTATTTTAG-TAATTTTACAAGAC-AA
*
91627074 GGGTATTTTAGTAATTTTGCAA-ACCAA
1 GGGTATTTTAGTAATTTTACAAGA-CAA
* * *
91627101 GGGTATTTTGGTGATTTTATAA-ACCAA
1 GGGTATTTTAGTAATTTTACAAGA-CAA
*
91627128 GGGTATTTTAGTAATTTTATAA-ACCAA
1 GGGTATTTTAGTAATTTTACAAGA-CAA
* *
91627155 GGGTATTTTGGTAATTTTACAAG-CCA
1 GGGTATTTTAGTAATTTTACAAGACAA
91627181 GGGTATTTT
1 GGGTATTTT
91627190 GGTGATTTGG
Statistics
Matches: 234, Mismatches: 30, Indels: 27
0.80 0.10 0.09
Matches are distributed among these distances:
26 41 0.18
27 189 0.81
28 4 0.02
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGTATTTTAGTAATTTTACAAGACAA
Found at i:91626940 original size:26 final size:26
Alignment explanation
Indices: 91626901--91626973 Score: 94
Period size: 26 Copynumber: 2.8 Consensus size: 26
91626891 CTTTTGTAAT
91626901 TTTACAAGTCGAGGGTATTTCAATAA
1 TTTACAAGTCGAGGGTATTTCAATAA
* * *
91626927 TTTACAGGTTGAGGGTATTTCAGTAA
1 TTTACAAGTCGAGGGTATTTCAATAA
91626953 TTTCACAAGTC-AGGGGTATTT
1 TTT-ACAAGTCGA-GGGTATTT
91626974 TGGTAATTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
26 27 0.68
27 13 0.32
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.37
Consensus pattern (26 bp):
TTTACAAGTCGAGGGTATTTCAATAA
Found at i:91627009 original size:54 final size:53
Alignment explanation
Indices: 91626966--91627189 Score: 286
Period size: 54 Copynumber: 4.2 Consensus size: 53
91626956 CACAAGTCAG
* * *
91626966 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACAA
1 GGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGATAATTTTACAAACAA
* * * *
91627019 GGGGTATTTTAGTAATTTTACAAGCTAGGGGTATTTTGATAATTTTATAAACAAA
1 -GGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGATAATTTTACAAAC-AA
* * * *
91627074 GGGTATTTTAGTAATTTTGCAAACCAAGGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGATAATTTTACAAA-CAA
* * * *
91627128 GGGTATTTTAGTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAGCCA
1 GGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGATAATTTTACAAACAA
91627181 GGGTATTTT
1 GGGTATTTT
91627190 GGTGATTTGG
Statistics
Matches: 153, Mismatches: 15, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
53 11 0.07
54 139 0.91
55 3 0.02
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (53 bp):
GGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGATAATTTTACAAACAA
Found at i:91627050 original size:81 final size:80
Alignment explanation
Indices: 91626938--91627189 Score: 292
Period size: 81 Copynumber: 3.1 Consensus size: 80
91626928 TTACAGGTTG
* * * * *
91626938 AGGGTATTTCAGTAATTTCACAAG-TCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTT
1 AGGGTATTTTAGTAATTTTACAAGCT-AGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTT
91627002 GATAATTTTACAAACA
65 GATAATTTTACAAACA
*
91627018 AGGGGTATTTTAGTAATTTTACAAGCTAGGGGTATTTTGATAATTTTATAAACAAAGGGTATTTT
1 A-GGGTATTTTAGTAATTTTACAAGCTAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTT
*
91627083 -AGTAATTTTGCAAACCA
65 GA-TAATTTTACAAA-CA
* * * * * * * *
91627100 AGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTAATTTTATAAACCAAGGGTATTTTG
1 AGGGTATTTTAGTAATTTTACAAGCTAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTG
* * *
91627165 GTAATTTTACAAGCC
66 ATAATTTTACAAACA
91627180 AGGGTATTTT
1 AGGGTATTTT
91627190 GGTGATTTGG
Statistics
Matches: 147, Mismatches: 20, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
80 13 0.09
81 130 0.88
82 4 0.03
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.39
Consensus pattern (80 bp):
AGGGTATTTTAGTAATTTTACAAGCTAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTG
ATAATTTTACAAACA
Found at i:91635410 original size:33 final size:32
Alignment explanation
Indices: 91635373--91635485 Score: 111
Period size: 33 Copynumber: 3.4 Consensus size: 32
91635363 TACCTAAAAG
91635373 GTACAATTGGAAAAGGAAATGTACACTGTATGT
1 GTACAATT-GAAAAGGAAATGTACACTGTATGT
* * * *
91635406 GTACAACTTAAAAAGGAAACGTACACTTTGTGT
1 GTACAA-TTGAAAAGGAAATGTACACTGTATGT
* * * *
91635439 GTATACTTGAAAAGGAAATGTACGCCT-TGTGT
1 GTACAATTGAAAAGGAAATGTAC-ACTGTATGT
91635471 GTACAATGTGAAAAG
1 GTACAAT-TGAAAAG
91635486 TGGTAGCTTA
Statistics
Matches: 66, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
32 25 0.38
33 39 0.59
34 2 0.03
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.27
Consensus pattern (32 bp):
GTACAATTGAAAAGGAAATGTACACTGTATGT
Found at i:91635623 original size:31 final size:31
Alignment explanation
Indices: 91635478--91635625 Score: 201
Period size: 31 Copynumber: 4.8 Consensus size: 31
91635468 TGTGTACAAT
*
91635478 GTGAAAAGTGGTAGCTT-ATGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCA-GCTACCTAATCA
*
91635509 GTGAAAAGTGGTAGCTTCGGCTACCTAATCA
1 GTGAAAAGTGGTAGCTTCAGCTACCTAATCA
* * *
91635540 GTGAAAAGTAGTAGCTTCGGCTA-CTAGATTA
1 GTGAAAAGTGGTAGCTTCAGCTACCTA-ATCA
*
91635571 GTGAAAAGTGGTAGCTCCAGCTACCTAATCA
1 GTGAAAAGTGGTAGCTTCAGCTACCTAATCA
*
91635602 GTGAATAGTGGTAGCTTCAGCTAC
1 GTGAAAAGTGGTAGCTTCAGCTAC
91635626 AAGTGACAAG
Statistics
Matches: 104, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
30 3 0.03
31 98 0.94
32 3 0.03
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.27
Consensus pattern (31 bp):
GTGAAAAGTGGTAGCTTCAGCTACCTAATCA
Found at i:91635746 original size:27 final size:27
Alignment explanation
Indices: 91635715--91635779 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
91635705 TAGTTGAACT
*
91635715 ATGGCAAAGTGATAAAGTGTGCCAATC
1 ATGGCAAAGTGATAAAGTGTGCCAAAC
*
91635742 ATGGCAAAGTGATATAGTGTGCCAAAC
1 ATGGCAAAGTGATAAAGTGTGCCAAAC
*
91635769 ATAGCAAAGTG
1 ATGGCAAAGTG
91635780 TTCAGTGATG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.38, C:0.14, G:0.26, T:0.22
Consensus pattern (27 bp):
ATGGCAAAGTGATAAAGTGTGCCAAAC
Found at i:91635899 original size:34 final size:34
Alignment explanation
Indices: 91635827--91635900 Score: 112
Period size: 34 Copynumber: 2.2 Consensus size: 34
91635817 CATGGAAAAG
91635827 TGTGAAACGTAGGTATGGTATTTCCATACCGAGC
1 TGTGAAACGTAGGTATGGTATTTCCATACCGAGC
* * * *
91635861 TGTGAAATGTAGGTATGGTGTTTCCATACTGAGT
1 TGTGAAACGTAGGTATGGTATTTCCATACCGAGC
91635895 TGTGAA
1 TGTGAA
91635901 TCCTGGCACT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (34 bp):
TGTGAAACGTAGGTATGGTATTTCCATACCGAGC
Found at i:91639856 original size:27 final size:27
Alignment explanation
Indices: 91639818--91639898 Score: 153
Period size: 27 Copynumber: 3.0 Consensus size: 27
91639808 ATAGATTAGT
*
91639818 TAGCACGTAAAGCATACGTGTTATCAA
1 TAGCACATAAAGCATACGTGTTATCAA
91639845 TAGCACATAAAGCATACGTGTTATCAA
1 TAGCACATAAAGCATACGTGTTATCAA
91639872 TAGCACATAAAGCATACGTGTTATCAA
1 TAGCACATAAAGCATACGTGTTATCAA
91639899 ATATAATCTT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.26
Consensus pattern (27 bp):
TAGCACATAAAGCATACGTGTTATCAA
Found at i:91649184 original size:56 final size:56
Alignment explanation
Indices: 91649098--91649217 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
91649088 ACAAGGGATG
91649098 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
91649154 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
91649210 ATGGGCAA
1 ATGGGCAA
91649218 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:91650741 original size:49 final size:47
Alignment explanation
Indices: 91650662--91651166 Score: 712
Period size: 47 Copynumber: 10.6 Consensus size: 47
91650652 TATTTGAATA
*
91650662 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
91650709 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
91650758 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
91650807 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
91650856 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
91650903 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
91650950 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
91650999 AATGTGAACA-TGTGTATGTGTAATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
91651046 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
91651093 AATTTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
91651140 GATGTGGAAGTGTGTAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
91651167 TCCCGAAGGA
Statistics
Matches: 423, Mismatches: 27, Indels: 16
0.91 0.06 0.03
Matches are distributed among these distances:
46 2 0.00
47 236 0.56
49 183 0.43
50 2 0.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:91651161 original size:143 final size:142
Alignment explanation
Indices: 91650662--91651145 Score: 769
Period size: 143 Copynumber: 3.4 Consensus size: 142
91650652 TATTTGAATA
* *
91650662 AATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA-AGTGTATA
1 AATGTGAAAGTGATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG--TG
* * * *
91650725 TATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA-AGTGTATATATATGTGATAAGGC
63 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG--CATATATGAGATAAGGC
* *
91650789 CTAATGGCCGATGTGATG
125 CGAATGGCCAATGTGATG
91650807 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTA
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTA
91650872 TGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAAT
65 TGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAAT
91650937 GGCCAATGTGATG
130 GGCCAATGTGATG
91650950 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTA
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTA
*
91651015 TGTGTAATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAAT
65 TGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAAT
91651080 GGCCAATGTGATG
130 GGCCAATGTGATG
* *
91651093 AATTTGAAAGTG-TATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTG
1 AATGTGAAAGTGATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
91651146 GAAGTGTGTA
Statistics
Matches: 324, Mismatches: 11, Indels: 12
0.93 0.03 0.03
Matches are distributed among these distances:
141 40 0.12
143 184 0.57
145 54 0.17
146 1 0.00
147 44 0.14
148 1 0.00
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.28
Consensus pattern (142 bp):
AATGTGAAAGTGATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTAT
GTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATG
GCCAATGTGATG
Found at i:91657030 original size:27 final size:27
Alignment explanation
Indices: 91656992--91657045 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
91656982 GAGAATAGGA
91656992 AAGGGTGATAAGGTTTCTATTTTTAAT
1 AAGGGTGATAAGGTTTCTATTTTTAAT
91657019 AAGGGTGATAAGGTTTCTATTTTTAAT
1 AAGGGTGATAAGGTTTCTATTTTTAAT
91657046 CATGTATGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.30, C:0.04, G:0.22, T:0.44
Consensus pattern (27 bp):
AAGGGTGATAAGGTTTCTATTTTTAAT
Found at i:91657322 original size:56 final size:56
Alignment explanation
Indices: 91657255--91657366 Score: 179
Period size: 56 Copynumber: 2.0 Consensus size: 56
91657245 TGGAGGGGTG
* * *
91657255 AGCCATTGGGAGTGTTCTTGGTACACATCGTCTACAAACTATTATAGATGGGTATT
1 AGCCATTGGGAGTGTTCTCGGTACACATCATCTACAAACTATTACAGATGGGTATT
* *
91657311 AGCCATTGGGAGTGTTCTCGGTACGCATCATTTACAAACTATTACAGATGGGTATT
1 AGCCATTGGGAGTGTTCTCGGTACACATCATCTACAAACTATTACAGATGGGTATT
91657367 CCTACTCCTA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 51 1.00
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (56 bp):
AGCCATTGGGAGTGTTCTCGGTACACATCATCTACAAACTATTACAGATGGGTATT
Found at i:91658869 original size:23 final size:23
Alignment explanation
Indices: 91658792--91658906 Score: 81
Period size: 23 Copynumber: 4.8 Consensus size: 23
91658782 AACTCACCAT
* *
91658792 AGCTCGTATGAGCTTACCGATATATC
1 AGCTCATATGAGCTTACTG--AT-TC
* * * *
91658818 AGCTCGTAAGAGCTTGCTGTTCTC
1 AGCTCATATGAGCTTACTGAT-TC
*
91658842 AGCTCATATGATCTTACTGATTC
1 AGCTCATATGAGCTTACTGATTC
* *
91658865 AGCTCGTCA-GAGCTTACTGTTTC
1 AGCTCAT-ATGAGCTTACTGATTC
91658888 AGCTCA-ATAGAGCTTACTG
1 AGCTCATAT-GAGCTTACTG
91658907 TCCATCAGCT
Statistics
Matches: 72, Mismatches: 14, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
21 1 0.01
23 35 0.49
24 20 0.28
26 16 0.22
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.33
Consensus pattern (23 bp):
AGCTCATATGAGCTTACTGATTC
Found at i:91658878 original size:47 final size:46
Alignment explanation
Indices: 91658816--91658906 Score: 130
Period size: 47 Copynumber: 2.0 Consensus size: 46
91658806 TACCGATATA
* *
91658816 TCAGCTCGTAAGAGCTTGCTGTTCTCAGCTC-ATATGATCTTACTGAT
1 TCAGCTCGTAAGAGCTTACTGTT-TCAGCTCAATA-GAGCTTACTGAT
*
91658863 TCAGCTCGTCAGAGCTTACTGTTTCAGCTCAATAGAGCTTACTG
1 TCAGCTCGTAAGAGCTTACTGTTTCAGCTCAATAGAGCTTACTG
91658907 TCCATCAGCT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
46 16 0.40
47 24 0.60
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (46 bp):
TCAGCTCGTAAGAGCTTACTGTTTCAGCTCAATAGAGCTTACTGAT
Found at i:91658907 original size:23 final size:22
Alignment explanation
Indices: 91658816--91658907 Score: 94
Period size: 23 Copynumber: 4.0 Consensus size: 22
91658806 TACCGATATA
* *
91658816 TCAGCTCGTAAGAGCTTGCTGTT
1 TCAGCTCAT-AGAGCTTACTGTT
* *
91658839 CTCAGCTCATATGATCTTACTGAT
1 -TCAGCTCATA-GAGCTTACTGTT
*
91658863 TCAGCTCGTCAGAGCTTACTGTT
1 TCAGCTCAT-AGAGCTTACTGTT
91658886 TCAGCTCAATAGAGCTTACTGT
1 TCAGCTC-ATAGAGCTTACTGT
91658908 CCATCAGCTT
Statistics
Matches: 57, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
23 38 0.67
24 19 0.33
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.35
Consensus pattern (22 bp):
TCAGCTCATAGAGCTTACTGTT
Found at i:91661645 original size:24 final size:26
Alignment explanation
Indices: 91661595--91661646 Score: 72
Period size: 24 Copynumber: 2.0 Consensus size: 26
91661585 GTATCATATC
*
91661595 TCTTTTCAATCAAATATAATTATATGA
1 TCTTTTCAA-CAAATATAATTACATGA
91661622 TCTTTTCAA-AAA-ATAATTACATGA
1 TCTTTTCAACAAATATAATTACATGA
91661646 T
1 T
91661647 AAAAAATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 12 0.50
25 3 0.12
27 9 0.38
ACGTcount: A:0.42, C:0.12, G:0.04, T:0.42
Consensus pattern (26 bp):
TCTTTTCAACAAATATAATTACATGA
Found at i:91662103 original size:12 final size:12
Alignment explanation
Indices: 91662086--91662111 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
91662076 GTAATCTTTG
91662086 TTAAAAACAAAA
1 TTAAAAACAAAA
91662098 TTAAAAACAAAA
1 TTAAAAACAAAA
91662110 TT
1 TT
91662112 TGTTGTAACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.23
Consensus pattern (12 bp):
TTAAAAACAAAA
Found at i:91662845 original size:24 final size:27
Alignment explanation
Indices: 91662800--91662859 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 27
91662790 CCAAAATACT
* *
91662800 TCCTTAATTATTAGGTTATAAT-TTTTA
1 TCCTTAATTAATA-GTTATAATAATTTA
91662827 TCCTTAATTAATA-TT-TAATAATTTA
1 TCCTTAATTAATAGTTATAATAATTTA
91662852 TCC-TAATT
1 TCCTTAATT
91662860 TTTTCATTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
24 9 0.30
25 9 0.30
27 12 0.40
ACGTcount: A:0.33, C:0.10, G:0.03, T:0.53
Consensus pattern (27 bp):
TCCTTAATTAATAGTTATAATAATTTA
Found at i:91663894 original size:16 final size:16
Alignment explanation
Indices: 91663873--91663906 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
91663863 TAGTAATTTT
91663873 ATGTTAAAG-GACTAAA
1 ATGTTAAAGTGA-TAAA
91663889 ATGTTAAAGTGATAAA
1 ATGTTAAAGTGATAAA
91663905 AT
1 AT
91663907 TATAAGGACT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 15 0.88
17 2 0.12
ACGTcount: A:0.50, C:0.03, G:0.18, T:0.29
Consensus pattern (16 bp):
ATGTTAAAGTGATAAA
Found at i:91670870 original size:12 final size:12
Alignment explanation
Indices: 91670853--91670890 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
91670843 CTTCAAAATC
* *
91670853 CCTAAATTCTCT
1 CCTAAAATCCCT
91670865 CCTAAAATCCCT
1 CCTAAAATCCCT
91670877 CCTAAAATCCCT
1 CCTAAAATCCCT
91670889 CC
1 CC
91670891 AACCGATCAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.29, C:0.42, G:0.00, T:0.29
Consensus pattern (12 bp):
CCTAAAATCCCT
Found at i:91677359 original size:46 final size:46
Alignment explanation
Indices: 91677224--91677437 Score: 143
Period size: 46 Copynumber: 4.6 Consensus size: 46
91677214 GTTATTGTGG
* * ** * * *
91677224 GCTAATGTAAGACATGTCTGGGACATGCATCAGCGGC-ATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACGAGT
* * * **
91677270 GCCAGCGTAAGACCATGTTTGGGACATGGCATCGGAATCGAGACGAGT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGAGT
91677318 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTAAG-
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACG--AGT
* ** * * *
91677365 CCT-GCATAAGACATGTCTGGGACATGTATTGG-CTACGAGATGA-T
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGAGT
91677409 AG-TCAGTGTAAGACCATGTCTGGGACATG
1 -GCT-AGTGTAAGA-CATGTCTGGGACATG
91677438 GCATTGACAT
Statistics
Matches: 132, Mismatches: 25, Indels: 21
0.74 0.14 0.12
Matches are distributed among these distances:
44 2 0.02
45 2 0.02
46 61 0.46
47 43 0.33
48 23 0.17
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGAGT
Found at i:91677436 original size:47 final size:45
Alignment explanation
Indices: 91677318--91677484 Score: 142
Period size: 47 Copynumber: 3.6 Consensus size: 45
91677308 CGAGACGAGT
* * * **
91677318 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCAT-TGACACGAGATATAA
** * *
91677364 GCCT-GCATAAGACATGTCTGGGACATGTATTGGCTACGAGATGAT-A
1 G-CTAGTGTAAGACATGTCTGGGACATGCATTGAC-ACGAGAT-ATAA
*
91677410 G-TCAGTGTAAGACCATGTCTGGGACATGGCATTGACATGAGATATAA
1 GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATTGACACGAGATATAA
*
91677457 GCTAGTGTAAGATCATGTCTAGGACATG
1 GCTAGTGTAAGA-CATGTCTGGGACATG
91677485 GCACCGGAAA
Statistics
Matches: 97, Mismatches: 15, Indels: 18
0.75 0.12 0.14
Matches are distributed among these distances:
44 1 0.01
45 2 0.02
46 40 0.41
47 47 0.48
48 7 0.07
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATTGACACGAGATATAA
Found at i:91678684 original size:21 final size:22
Alignment explanation
Indices: 91678644--91678684 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
91678634 TCAAATTGGT
91678644 CACACGGGCGTGTCGCCCCTCC
1 CACACGGGCGTGTCGCCCCTCC
*
91678666 CACACTGGCGTGT-GCCCCT
1 CACACGGGCGTGTCGCCCCT
91678685 ATGCCAAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.10, C:0.46, G:0.27, T:0.17
Consensus pattern (22 bp):
CACACGGGCGTGTCGCCCCTCC
Found at i:91680618 original size:53 final size:53
Alignment explanation
Indices: 91680537--91680744 Score: 202
Period size: 55 Copynumber: 3.8 Consensus size: 53
91680527 ATCCTTTTGA
* * * *
91680537 AACTTACCATTGCCATGTCTTGACATGGTCTTATAAGGTATCCTTGCCTTATG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* * * *
91680590 AACTCACCAATGCCATGCCTTGGCATGGTATTACATGGGA-CCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-G
* * * * **
91680644 TAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* ** *
91680698 AACCTTACCAATTGCTATGCCTTGGTATGATCTTACATGGTATCCTT
1 AA-CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
91680745 AAACCCTAAT
Statistics
Matches: 123, Mismatches: 26, Indels: 10
0.77 0.16 0.06
Matches are distributed among these distances:
52 2 0.02
53 43 0.35
54 8 0.07
55 68 0.55
56 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
Found at i:91680689 original size:108 final size:110
Alignment explanation
Indices: 91680537--91680737 Score: 271
Period size: 108 Copynumber: 1.8 Consensus size: 110
91680527 ATCCTTTTGA
* * * **
91680537 AACTTACCATTGCCATGTCTTGACATGGTCTTATAAGGTATCCTTGCCTTATGAA-CTCACCAA-
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACAAGATATCCTTGCCTTAAAAACCTCACCAAT
*
91680600 TGCCATGCCTTGGCATGGTATTACATGGGACCTTTGCCTTATAGT
66 TGCCATGCCTTGGCATGATATTACATGGGACCTTTGCCTTATAGT
* * * *
91680645 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAAAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACAAGATATCCTTGCCTTAAAAACCTCACCAAT
* * *
91680710 TGCTATGCCTTGGTATGATCTTACATGG
66 TGCCATGCCTTGGCATGATATTACATGG
91680738 TATCCTTAAA
Statistics
Matches: 78, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
108 47 0.60
109 7 0.09
110 24 0.31
ACGTcount: A:0.24, C:0.23, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACAAGATATCCTTGCCTTAAAAACCTCACCAAT
TGCCATGCCTTGGCATGATATTACATGGGACCTTTGCCTTATAGT
Found at i:91680899 original size:41 final size:41
Alignment explanation
Indices: 91680853--91680944 Score: 184
Period size: 41 Copynumber: 2.2 Consensus size: 41
91680843 TGAATAATTT
91680853 CATAAAATAAATATACACATGCTGGAAATTAACAAAATTAA
1 CATAAAATAAATATACACATGCTGGAAATTAACAAAATTAA
91680894 CATAAAATAAATATACACATGCTGGAAATTAACAAAATTAA
1 CATAAAATAAATATACACATGCTGGAAATTAACAAAATTAA
91680935 CATAAAATAA
1 CATAAAATAA
91680945 TAGAATATTG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.58, C:0.12, G:0.07, T:0.24
Consensus pattern (41 bp):
CATAAAATAAATATACACATGCTGGAAATTAACAAAATTAA
Found at i:91682665 original size:34 final size:34
Alignment explanation
Indices: 91682606--91682671 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
91682596 GTTTCGGTTA
* *
91682606 GGGCCTTAGCCCAATACAGTAACAGTATCAGTGT
1 GGGCCTTAGCCCAATACAATAACAGTAACAGTGT
* * *
91682640 GGGCCTTAGCCCACTTCAATGACAGTAACAGT
1 GGGCCTTAGCCCAATACAATAACAGTAACAGT
91682672 ACAGTTATGC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.23
Consensus pattern (34 bp):
GGGCCTTAGCCCAATACAATAACAGTAACAGTGT
Found at i:91692231 original size:27 final size:26
Alignment explanation
Indices: 91692201--91692276 Score: 66
Period size: 27 Copynumber: 2.8 Consensus size: 26
91692191 GTATACATGG
*
91692201 GGTAGTCTGCTAGGACAGTAAACACAA
1 GGTAGTCTGCTAGGACAATAAACAC-A
*
91692228 GGTAGTC--CATCGGAACAATAAACACA
1 GGTAGTCTGC-TAGG-ACAATAAACACA
* *
91692254 GGCTAGTCTGCCAGGACATTAAA
1 GG-TAGTCTGCTAGGACAATAAA
91692277 TATGGGATGA
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
25 1 0.03
26 6 0.15
27 29 0.74
28 2 0.05
29 1 0.03
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (26 bp):
GGTAGTCTGCTAGGACAATAAACACA
Found at i:91692380 original size:27 final size:27
Alignment explanation
Indices: 91692349--91692407 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
91692339 ATTAAGCATG
* *
91692349 AGGTAGTCCGCTAGGACATTAAATACA
1 AGGTAGTCCGCCAGGACATTAAACACA
* *
91692376 GGGTAGTCCGCCGGGACATTAAACACA
1 AGGTAGTCCGCCAGGACATTAAACACA
91692403 AGGTA
1 AGGTA
91692408 AACTACCAAG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.34, C:0.20, G:0.27, T:0.19
Consensus pattern (27 bp):
AGGTAGTCCGCCAGGACATTAAACACA
Found at i:91692925 original size:29 final size:29
Alignment explanation
Indices: 91692883--91692940 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
91692873 ATTAAGAAGG
91692883 AATAACTAAGTGACAAATATATCTGTCAA
1 AATAACTAAGTGACAAATATATCTGTCAA
91692912 AATAACTAAGTGACAAATATATCTGTCAA
1 AATAACTAAGTGACAAATATATCTGTCAA
91692941 GACTATTCCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.48, C:0.14, G:0.10, T:0.28
Consensus pattern (29 bp):
AATAACTAAGTGACAAATATATCTGTCAA
Found at i:91696721 original size:20 final size:20
Alignment explanation
Indices: 91696696--91696749 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
91696686 AGGGGCATAT
91696696 GCCCGTGTGGCCTGGGACAC
1 GCCCGTGTGGCCTGGGACAC
*
91696716 GCCCGTGTGGCCTGGGACAT
1 GCCCGTGTGGCCTGGGACAC
91696736 GCCCGTGTGGCCTG
1 GCCCGTGTGGCCTG
91696750 CCCATGGGCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.07, C:0.33, G:0.41, T:0.19
Consensus pattern (20 bp):
GCCCGTGTGGCCTGGGACAC
Found at i:91697619 original size:53 final size:52
Alignment explanation
Indices: 91697526--91697683 Score: 156
Period size: 52 Copynumber: 3.0 Consensus size: 52
91697516 CATGGTCTTA
* * * ** *
91697526 CACGGATCACATAACATACCGATGCCATATCTTAGATATGGTCTTATACGGAAT
1 CACGAATCACAT-A-ATACCAATGCCATAGCCCAGCTATGGTCTTATACGGAAT
* * *
91697580 CAC-ATTATCACATAATACCAATGCCATAGCCCTGCTATGGTATTATACGGGAT
1 CACGA--ATCACATAATACCAATGCCATAGCCCAGCTATGGTCTTATACGGAAT
* ** *
91697633 CTCGAATCACATTGTACCGATGCCATAGCCCAGCTATGGTCTTATACGGAA
1 CACGAATCACATAATACCAATGCCATAGCCCAGCTATGGTCTTATACGGAA
91697684 GTACATATCA
Statistics
Matches: 85, Mismatches: 16, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
52 40 0.47
53 33 0.39
54 5 0.06
55 7 0.08
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (52 bp):
CACGAATCACATAATACCAATGCCATAGCCCAGCTATGGTCTTATACGGAAT
Found at i:91711144 original size:69 final size:69
Alignment explanation
Indices: 91711033--91711165 Score: 239
Period size: 69 Copynumber: 1.9 Consensus size: 69
91711023 AAAAATAGAG
* * *
91711033 ATTTAGAACATATTAATCCGAAAATAATTAACCACCGTAAATCGCAGAATATGTACTAATATACC
1 ATTTAGAACATATTAATCCGAAAATAATTAACCAACGTAAATCACAGAATAAGTACTAATATACC
91711098 AAAA
66 AAAA
91711102 ATTTAGAACATATTAATCCGAAAATAATTAACCAACGTAAATCACAGAATAAGTACTAATATAC
1 ATTTAGAACATATTAATCCGAAAATAATTAACCAACGTAAATCACAGAATAAGTACTAATATAC
91711166 TAAGTATCAG
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
69 61 1.00
ACGTcount: A:0.49, C:0.17, G:0.08, T:0.26
Consensus pattern (69 bp):
ATTTAGAACATATTAATCCGAAAATAATTAACCAACGTAAATCACAGAATAAGTACTAATATACC
AAAA
Found at i:91712937 original size:31 final size:31
Alignment explanation
Indices: 91712894--91712961 Score: 127
Period size: 31 Copynumber: 2.2 Consensus size: 31
91712884 AGTACACTTC
*
91712894 ATTTCAATGATTAAATTTCGTAATTTTTTTG
1 ATTTAAATGATTAAATTTCGTAATTTTTTTG
91712925 ATTTAAATGATTAAATTTCGTAATTTTTTTG
1 ATTTAAATGATTAAATTTCGTAATTTTTTTG
91712956 ATTTAA
1 ATTTAA
91712962 TTAATTGATA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.32, C:0.04, G:0.09, T:0.54
Consensus pattern (31 bp):
ATTTAAATGATTAAATTTCGTAATTTTTTTG
Found at i:91713880 original size:7 final size:8
Alignment explanation
Indices: 91713856--91713880 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
91713846 TATTTTAGTT
91713856 AAATTAAA
1 AAATTAAA
91713864 AAATTAAA
1 AAATTAAA
91713872 AAATTAAA
1 AAATTAAA
91713880 A
1 A
91713881 TCTTATTCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AAATTAAA
Found at i:91715566 original size:16 final size:16
Alignment explanation
Indices: 91715545--91715580 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
91715535 CTTATTTTTA
91715545 CATCAAGATTATGCAC
1 CATCAAGATTATGCAC
*
91715561 CATCAAGATTGTGCAC
1 CATCAAGATTATGCAC
91715577 CATC
1 CATC
91715581 TCCTTTACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.25
Consensus pattern (16 bp):
CATCAAGATTATGCAC
Found at i:91726679 original size:23 final size:23
Alignment explanation
Indices: 91726648--91726691 Score: 56
Period size: 22 Copynumber: 1.9 Consensus size: 23
91726638 ATTATTTTAA
91726648 TTTATTTA-TATATATTTTGGTTAT
1 TTTATTTATTAT-TA-TTTGGTTAT
91726672 TTTA-TTATTATTATTTGGTT
1 TTTATTTATTATTATTTGGTT
91726692 TTGGATTGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 7 0.37
23 5 0.26
24 7 0.37
ACGTcount: A:0.23, C:0.00, G:0.09, T:0.68
Consensus pattern (23 bp):
TTTATTTATTATTATTTGGTTAT
Found at i:91732632 original size:46 final size:46
Alignment explanation
Indices: 91732518--91732737 Score: 178
Period size: 48 Copynumber: 4.7 Consensus size: 46
91732508 CTATCAGTGT
* * *
91732518 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTT-GTATATCACGAGGT
1 CGATG-CATGTCCCAGACATGTCTTACACTAGCTTCG-ATCTCA--AGGC
* *
91732567 CGATGCATGTCTCAGACATGTCTTACACTAGCTCTCGA-CTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT-TCGATCTCAAGGC
* ** *
91732613 CGATGCATGTCCCAGACATGTCTTACACTGGCTTAAATATCTCAAGGT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTT--CGATCTCAAGGC
* * * * **
91732661 CGATGCATGTCCTAAACATGTCTTACATTGGCTCTC-ATGCT-GTGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT-TCGAT-CTCAAGGC
* *
91732707 TGATGCATGTCCCGGACATGTCTTACACTAG
1 CGATGCATGTCCCAGACATGTCTTACACTAG
91732738 TACACACGTC
Statistics
Matches: 140, Mismatches: 24, Indels: 17
0.77 0.13 0.09
Matches are distributed among these distances:
45 1 0.01
46 62 0.44
47 3 0.02
48 65 0.46
49 8 0.06
50 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTCGATCTCAAGGC
Found at i:91732636 original size:94 final size:94
Alignment explanation
Indices: 91732518--91732737 Score: 266
Period size: 94 Copynumber: 2.3 Consensus size: 94
91732508 CTATCAGTGT
* ** * *
91732518 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCACGAGGTCGATGCATGT-CTCAG
1 CGATG-CATGTCCCAGACATGTCTTACACTAGCTTAAATATCACAAGGTCGATGCATGTCCT-AA
91732582 ACATGTCTTACACTAGCTCTCGACT-CAAT-GC
64 ACATGTCTTACACTAGCTCTC-A-TGCAATGGC
* *
91732613 CGATGCATGTCCCAGACATGTCTTACACTGGCTTAAATATCTCAAGGTCGATGCATGTCCTAAAC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTAAATATCACAAGGTCGATGCATGTCCTAAAC
* * **
91732678 ATGTCTTACATTGGCTCTCATGCTGTGGC
66 ATGTCTTACACTAGCTCTCATGCAATGGC
* *
91732707 TGATGCATGTCCCGGACATGTCTTACACTAG
1 CGATGCATGTCCCAGACATGTCTTACACTAG
91732738 TACACACGTC
Statistics
Matches: 108, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
92 1 0.01
93 3 0.03
94 97 0.90
95 7 0.06
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (94 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTAAATATCACAAGGTCGATGCATGTCCTAAAC
ATGTCTTACACTAGCTCTCATGCAATGGC
Found at i:91738951 original size:43 final size:42
Alignment explanation
Indices: 91738864--91738977 Score: 104
Period size: 43 Copynumber: 2.7 Consensus size: 42
91738854 AGCTCGTACA
* * ** * * *
91738864 ATGCCATATCCTAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCATAGCCTAGATATGGTCTTACACGAAATAAAATAACG
*
91738906 ATGCCGATAGCCTAGCTATGGTCTTACACGAAATAAAATAACG
1 ATGCC-ATAGCCTAGATATGGTCTTACACGAAATAAAATAACG
* *
91738949 ATGCCA-ATGTCCCAGACATGGTCTTACAC
1 ATGCCATA-G-CCTAGATATGGTCTTACAC
91738978 ATACTCACAT
Statistics
Matches: 58, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
41 1 0.02
42 7 0.12
43 50 0.86
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.28
Consensus pattern (42 bp):
ATGCCATAGCCTAGATATGGTCTTACACGAAATAAAATAACG
Found at i:91750616 original size:20 final size:20
Alignment explanation
Indices: 91750591--91750632 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
91750581 ATTAGAGTTC
*
91750591 CACTGACCTTCAACTTCTTA
1 CACTGACATTCAACTTCTTA
91750611 CACTGACATTCAACTTCTTA
1 CACTGACATTCAACTTCTTA
91750631 CA
1 CA
91750633 TGGCACAGCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.33, G:0.05, T:0.33
Consensus pattern (20 bp):
CACTGACATTCAACTTCTTA
Found at i:91753388 original size:21 final size:22
Alignment explanation
Indices: 91753362--91753402 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
91753352 AACTTGACAC
*
91753362 AAGGGC-ACACGCCTGTGTGGG
1 AAGGGCAACACGCCGGTGTGGG
91753383 AAGGGCAACACGCCGGTGTG
1 AAGGGCAACACGCCGGTGTG
91753403 ACCAATTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.22, C:0.24, G:0.41, T:0.12
Consensus pattern (22 bp):
AAGGGCAACACGCCGGTGTGGG
Found at i:91759624 original size:12 final size:13
Alignment explanation
Indices: 91759607--91759633 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
91759597 CACGGAATGA
91759607 TTTTTTGAAAATT
1 TTTTTTGAAAATT
91759620 TTTTTTGAAAATT
1 TTTTTTGAAAATT
91759633 T
1 T
91759634 CGACGTTTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (13 bp):
TTTTTTGAAAATT
Found at i:91762689 original size:18 final size:18
Alignment explanation
Indices: 91762648--91762691 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
91762638 GTGCCCCAAG
*
91762648 CCACACGGGTGTGTGAGT
1 CCACACGGGCGTGTGAGT
**
91762666 AGACACGGGCGTGTGAGT
1 CCACACGGGCGTGTGAGT
91762684 CCACACGG
1 CCACACGG
91762692 CCCATCTACA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.20, C:0.25, G:0.39, T:0.16
Consensus pattern (18 bp):
CCACACGGGCGTGTGAGT
Found at i:91765656 original size:46 final size:46
Alignment explanation
Indices: 91765589--91765681 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
91765579 GCTAAATAAG
91765589 ACCCTGGATTTTAATGAAGGCTAAAGGAAAAGGTTCTTTAGCACTA
1 ACCCTGGATTTTAATGAAGGCTAAAGGAAAAGGTTCTTTAGCACTA
91765635 ACCCTGGATTTTAATGAAGGCTAAAGGAAAAGGTTCTTTAGCACTA
1 ACCCTGGATTTTAATGAAGGCTAAAGGAAAAGGTTCTTTAGCACTA
91765681 A
1 A
91765682 TTATGAGATA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (46 bp):
ACCCTGGATTTTAATGAAGGCTAAAGGAAAAGGTTCTTTAGCACTA
Found at i:91770243 original size:40 final size:40
Alignment explanation
Indices: 91770149--91770293 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
91770139 TACTCGAATG
*
91770149 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
91770190 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
91770230 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
91770270 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
91770294 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:91778300 original size:40 final size:40
Alignment explanation
Indices: 91778206--91778350 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
91778196 TACTCGAATG
*
91778206 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
91778247 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
91778287 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* * *
91778327 ATATCCGGGTTAAGACCCAAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
91778351 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 61 0.67
41 28 0.31
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:91781443 original size:45 final size:45
Alignment explanation
Indices: 91781379--91781470 Score: 184
Period size: 45 Copynumber: 2.0 Consensus size: 45
91781369 GGGTGCACGA
91781379 TAACTCATCAAATACCCTAATGGTATTTTCTAACCAAAATTCTGC
1 TAACTCATCAAATACCCTAATGGTATTTTCTAACCAAAATTCTGC
91781424 TAACTCATCAAATACCCTAATGGTATTTTCTAACCAAAATTCTGC
1 TAACTCATCAAATACCCTAATGGTATTTTCTAACCAAAATTCTGC
91781469 TA
1 TA
91781471 TCTCCCGGTT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.34
Consensus pattern (45 bp):
TAACTCATCAAATACCCTAATGGTATTTTCTAACCAAAATTCTGC
Found at i:91793487 original size:46 final size:45
Alignment explanation
Indices: 91793379--91793512 Score: 128
Period size: 46 Copynumber: 2.9 Consensus size: 45
91793369 GATTTATCAA
* * *
91793379 TCATCTCG-TAGCCGATGCATGTCCCAGACATGTCTTACACTGGCT
1 TCATCTCGATA-CCGATGCATGTCCCGGACATGTCTTACACTAGCG
* * ***
91793424 TACGTCTTGAGGTCGATGCATGTCCCGGACATGTCTTACACTAGCAG
1 T-CATCTCGATACCGATGCATGTCCCGGACATGTCTTACACTAGC-G
91793471 TCATCTCGATACCGATGCAATGTCCCAGG-CATGGTCTTACAC
1 TCATCTCGATACCGATGC-ATGTCCC-GGACAT-GTCTTACAC
91793513 AGGCTCTCAT
Statistics
Matches: 70, Mismatches: 13, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
45 1 0.01
46 47 0.67
47 11 0.16
48 11 0.16
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.28
Consensus pattern (45 bp):
TCATCTCGATACCGATGCATGTCCCGGACATGTCTTACACTAGCG
Found at i:91793538 original size:94 final size:92
Alignment explanation
Indices: 91793379--91793562 Score: 237
Period size: 94 Copynumber: 2.0 Consensus size: 92
91793369 GATTTATCAA
* * **
91793379 TCATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTTGAGGTCGATGCA
1 TCATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACAGGCTTACATAATGAGGTCGATGCA
* * *
91793444 TGTCCCGGACATGTCTTACACTAGCAG
66 TGTCCCAGACACGCCTTACACTAGCAG
* *
91793471 TCATCTCGATA-CCGATGCAATGTCCCAGGCATGGTCTTACACAGGCTCT-CATAATGTGGTCGA
1 TCATCTCG-TAGCCGATGC-ATGTCCCAGACAT-GTCTTACACAGGCT-TACATAATGAGGTCGA
91793534 TGCATGTCCCAGACACGCCTTACACTAGC
62 TGCATGTCCCAGACACGCCTTACACTAGC
91793563 CCACAATAAC
Statistics
Matches: 79, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
92 15 0.19
93 14 0.18
94 49 0.62
95 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (92 bp):
TCATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACAGGCTTACATAATGAGGTCGATGCA
TGTCCCAGACACGCCTTACACTAGCAG
Found at i:91797699 original size:27 final size:26
Alignment explanation
Indices: 91797644--91797701 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
91797634 TACATCTCAA
* *
91797644 AGGGGCATATCAGTCATTTACCATGT
1 AGGGGCATATCAATCATTTACAATGT
*
91797670 AGGGGCATTTCAATCATTTTACTAAT-T
1 AGGGGCATATCAATCA-TTTAC-AATGT
91797697 AGGGG
1 AGGGG
91797702 GTCTAGGTAC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 14 0.52
27 11 0.41
28 2 0.07
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.33
Consensus pattern (26 bp):
AGGGGCATATCAATCATTTACAATGT
Found at i:91799724 original size:46 final size:46
Alignment explanation
Indices: 91799641--91799757 Score: 121
Period size: 46 Copynumber: 2.5 Consensus size: 46
91799631 GTGCCGATGC
* * *
91799641 CATGTCCCAGACACGGTCTTACACTGACAATCATCTCGTA-GTCGGTA
1 CATGTCCCAGACA-TGTCTTACACTGACAATCATCTCG-AGGCCGATA
* * * * *
91799688 CCTGTCCCAGACATGTCTTACACTGGC-TTACGTCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGACAAT-CATCTCGAGGCCGATA
91799734 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
91799758 AGCTCTCGTC
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
45 2 0.03
46 45 0.76
47 12 0.20
ACGTcount: A:0.22, C:0.32, G:0.20, T:0.26
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGACAATCATCTCGAGGCCGATA
Found at i:91799768 original size:46 final size:46
Alignment explanation
Indices: 91799690--91799856 Score: 176
Period size: 46 Copynumber: 3.6 Consensus size: 46
91799680 AGTCGGTACC
*
91799690 TGTCCCAGACATGTCTTACACTGGCT-TACGTCTCGAGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCGAGGCCGATGCA
* *
91799736 TGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCGATGCCA
1 TGTCCCAGACATGTCTTACACTAGCTCTCGTCTCGAGGCCGATG-CA
* * * * * * *
91799783 TATCCCCGACATGGTTTTACACTAGCTCTCATAAT-GTGGGCGATGCA
1 TGTCCCAGACAT-GTCTTACACTAGCTCTCGT-CTCGAGGCCGATGCA
* *
91799830 TGTCTCAGACATGTCTTACATTAGCTC
1 TGTCCCAGACATGTCTTACACTAGCTC
91799857 ACAAACAAAT
Statistics
Matches: 100, Mismatches: 17, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
46 52 0.52
47 24 0.24
48 23 0.23
49 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (46 bp):
TGTCCCAGACATGTCTTACACTAGCTCTCGTCTCGAGGCCGATGCA
Found at i:91806565 original size:46 final size:47
Alignment explanation
Indices: 91806445--91806614 Score: 142
Period size: 47 Copynumber: 3.7 Consensus size: 47
91806435 TGGGTAAAGT
* **
91806445 GCCGATGCCATGTCCCAGACACGGTCTTACACTGACTATCATCTTGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACAC-GACTATCATCTAATA
* * *
91806493 GCCGATG-CATGTCCCAAACAT-GTCTTACTA-G-CTCTCGTCTCAATA
1 GCCGATGCCATGTCCCAGACATGGTCTTAC-ACGACTATCATCT-AATA
* * *
91806538 -CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA--TAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACAC-GACTATCATCTAA--TA
91806585 GCCGATG-CATGTCCCAGACAT-GTCTTACAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACAC
91806615 TAGCTCAGAA
Statistics
Matches: 103, Mismatches: 9, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
44 13 0.13
45 19 0.18
46 24 0.23
47 29 0.28
48 18 0.17
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACGACTATCATCTAATA
Found at i:91806604 original size:47 final size:46
Alignment explanation
Indices: 91806443--91806620 Score: 163
Period size: 46 Copynumber: 3.8 Consensus size: 46
91806433 TATGGGTAAA
* * * **
91806443 GTGCCGATGCCATGTCCCAGACACGGTCTTACACTGACTATCATCTT
1 GTGCCGATGCCATGTCCCAGACA-TGTCTTACACTGGCTCTCATAAT
*
91806490 GTAGCCGATG-CATGTCCCAAACATGTCTTACTAGCT--CTCGTC-TCAA-
1 GT-GCCGATGCCATGTCCCAGACATGTCTTAC-A-CTGGCTC-TCAT-AAT
*
91806536 -TACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT
1 GTGCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTCATAAT
*
91806582 GTGGCCGATG-CATGTCCCAGACATGTCTTACACTAGCTC
1 GT-GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTC
91806621 AGAAACAAAT
Statistics
Matches: 109, Mismatches: 9, Indels: 27
0.75 0.06 0.19
Matches are distributed among these distances:
44 8 0.07
45 19 0.17
46 35 0.32
47 32 0.29
48 15 0.14
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.28
Consensus pattern (46 bp):
GTGCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCTCATAAT
Found at i:91806642 original size:92 final size:90
Alignment explanation
Indices: 91806449--91806631 Score: 219
Period size: 92 Copynumber: 2.0 Consensus size: 90
91806439 TAAAGTGCCG
**
91806449 ATGCCATGTCCCAGACACGGTCTTACACTGACTATCATCTTGTAGCCGATGCATGTCCCAAACAT
1 ATGCCATGTCCCAGACACGGTCTTACACTGACTATCATAATGTAGCCGATGCATGTCCCAAACAT
* * **
91806514 GTCTTACTAGCTCTCGTCTCAATACCG
66 GTCTTACTA-C-CTAGTCTCAAAACAA
* * * * *
91806541 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGACAT
1 ATGCCATGTCCCAGACACGGTCTTACACTGACTATCATAATGTAGCCGATGCATGTCCCAAACAT
91806606 GTCTTAC-A-CTAG-CTCAGAAACAA
66 GTCTTACTACCTAGTCTCA-AAACAA
91806629 ATG
1 ATG
91806632 ACCTAAATGT
Statistics
Matches: 79, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
87 4 0.05
88 9 0.11
91 1 0.01
92 65 0.82
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.27
Consensus pattern (90 bp):
ATGCCATGTCCCAGACACGGTCTTACACTGACTATCATAATGTAGCCGATGCATGTCCCAAACAT
GTCTTACTACCTAGTCTCAAAACAA
Done.