Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 275 of 349
Found at i:91807684 original size:19 final size:19
Alignment explanation
Indices: 91807660--91807700 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
91807650 CTTTTTTTAC
91807660 TTTATGCGATTTAGTCCTT
1 TTTATGCGATTTAGTCCTT
91807679 TTTATGCGATTTAGTCCTT
1 TTTATGCGATTTAGTCCTT
91807698 TTT
1 TTT
91807701 CGCAATTGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.15, C:0.15, G:0.15, T:0.56
Consensus pattern (19 bp):
TTTATGCGATTTAGTCCTT
Found at i:91812800 original size:28 final size:28
Alignment explanation
Indices: 91812760--91812837 Score: 95
Period size: 29 Copynumber: 2.8 Consensus size: 28
91812750 TACATGCTTG
* *
91812760 TGGCCTACTAGGCCCAATCTCAT-TCATA
1 TGGCCCACTAGGCCCAATCACATCT-ATA
* *
91812788 TGGCCCATTAGGCCCAAATCACATCTATG
1 TGGCCCACTAGGCCC-AATCACATCTATA
91812817 TGGCCCACTAGGCCCAATCAC
1 TGGCCCACTAGGCCCAATCAC
91812838 TTTTACAGTC
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
28 19 0.44
29 23 0.53
30 1 0.02
ACGTcount: A:0.26, C:0.35, G:0.17, T:0.23
Consensus pattern (28 bp):
TGGCCCACTAGGCCCAATCACATCTATA
Found at i:91812821 original size:29 final size:28
Alignment explanation
Indices: 91812758--91812837 Score: 99
Period size: 28 Copynumber: 2.8 Consensus size: 28
91812748 CATACATGCT
* *
91812758 TGTGGCCTACTAGGCCCAATCTCATTCA
1 TGTGGCCCACTAGGCCCAATCACATTCA
* *
91812786 TATGGCCCATTAGGCCCAAATCACA-TCTA
1 TGTGGCCCACTAGGCCC-AATCACATTC-A
91812815 TGTGGCCCACTAGGCCCAATCAC
1 TGTGGCCCACTAGGCCCAATCAC
91812838 TTTTACAGTC
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
28 22 0.50
29 22 0.50
ACGTcount: A:0.25, C:0.34, G:0.17, T:0.24
Consensus pattern (28 bp):
TGTGGCCCACTAGGCCCAATCACATTCA
Found at i:91816252 original size:51 final size:46
Alignment explanation
Indices: 91816133--91816258 Score: 216
Period size: 46 Copynumber: 2.7 Consensus size: 46
91816123 TGTAACCTGC
* *
91816133 CCATAAGCGAACTTGAACTCAACTCAACGAGCTCGGGAGTTCGCAT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGGAGTTCGCAT
* *
91816179 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGGAGTTCGCAT
91816225 CCATAAGTGAACTCGAACTCAACTCAACGAGCTC
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTC
91816259 AATACTCAAA
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGGAGTTCGCAT
Found at i:91818578 original size:56 final size:56
Alignment explanation
Indices: 91818492--91818611 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
91818482 ACAAGGGATG
91818492 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
91818548 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
91818604 ATAGGCAA
1 ATGGGCAA
91818612 TAAACTAATA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.46, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:91819876 original size:79 final size:81
Alignment explanation
Indices: 91819740--91819922 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
91819730 TCGAATGATG
* *
91819740 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
91819804 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
91819819 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
91819881 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
91819899 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
91819923 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:91819938 original size:40 final size:40
Alignment explanation
Indices: 91819741--91819924 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
91819731 CGAATGATGT
* * * *
91819741 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
91819781 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
91819821 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
91819859 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
91819900 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
91819925 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:91819946 original size:79 final size:79
Alignment explanation
Indices: 91819793--91819957 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
91819783 GGACTAAGAT
* **
91819793 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
91819858 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
91819872 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
91819935 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
91819951 CCGAAGG
1 CCGAAGG
91819958 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:91826491 original size:56 final size:56
Alignment explanation
Indices: 91826405--91826524 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
91826395 ACAAGGGATG
91826405 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
91826461 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
91826517 ATGGGCAA
1 ATGGGCAA
91826525 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:91827788 original size:79 final size:81
Alignment explanation
Indices: 91827652--91827834 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
91827642 TCGAATGATG
* *
91827652 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
91827716 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
91827731 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
91827793 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
91827811 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
91827835 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:91827850 original size:40 final size:40
Alignment explanation
Indices: 91827653--91827836 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
91827643 CGAATGATGT
* * * *
91827653 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
91827693 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
91827733 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
91827771 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
91827812 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
91827837 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:91827858 original size:79 final size:79
Alignment explanation
Indices: 91827705--91827869 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
91827695 GGACTAAGAT
* **
91827705 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
91827770 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
91827784 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
91827847 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
91827863 CCGAAGG
1 CCGAAGG
91827870 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:91833876 original size:48 final size:45
Alignment explanation
Indices: 91833783--91833911 Score: 158
Period size: 48 Copynumber: 2.8 Consensus size: 45
91833773 TCAATGCTGC
* *
91833783 ATCCCAGACACGGTCTTACACGAAATCTCATA-C--TG-AAGTCAT
1 ATCCCAGATATGGTCTTACACG-AATCTCATATCGATGCAAGTCAT
91833825 ATCCCAGATATGGTCTTACACGTAATCTCATATCGATGCTAATGTCAT
1 ATCCCAGATATGGTCTTACACG-AATCTCATATCGATGC-AA-GTCAT
*
91833873 ATCCCAGATATGGTCTTACACAGGATCTCATATCGATGC
1 ATCCCAGATATGGTCTTACAC-GAATCTCATATCGATGC
91833912 CATGTCTCAG
Statistics
Matches: 76, Mismatches: 4, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
42 29 0.38
43 1 0.01
45 2 0.03
47 2 0.03
48 41 0.54
49 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.29
Consensus pattern (45 bp):
ATCCCAGATATGGTCTTACACGAATCTCATATCGATGCAAGTCAT
Found at i:91833986 original size:37 final size:37
Alignment explanation
Indices: 91833924--91834047 Score: 189
Period size: 37 Copynumber: 3.4 Consensus size: 37
91833914 TGTCTCAGTC
*
91833924 ATGGTCTTACACGT-ATCACAATGCCATAGCCCAGCT
1 ATGGTCTTACACGTCATCACGATGCCATAGCCCAGCT
*
91833960 ATGGTCTTACATGTCATCACGATGCCATAGCCCAGCT
1 ATGGTCTTACACGTCATCACGATGCCATAGCCCAGCT
* *
91833997 ATGGTCTTACACG-CTATTACGATGCCATAGCCCAGTT
1 ATGGTCTTACACGTC-ATCACGATGCCATAGCCCAGCT
91834034 ATGGTCTTACACGT
1 ATGGTCTTACACGT
91834048 ACTACATGTA
Statistics
Matches: 80, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
36 14 0.17
37 66 0.82
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (37 bp):
ATGGTCTTACACGTCATCACGATGCCATAGCCCAGCT
Found at i:91834294 original size:19 final size:19
Alignment explanation
Indices: 91834266--91834307 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
91834256 ATACTGATTA
91834266 TACA-TTATTCGATAAGTG
1 TACATTTATTCGATAAGTG
91834284 TACATTTATTCGATAAGTG
1 TACATTTATTCGATAAGTG
91834303 TACAT
1 TACAT
91834308 AAACACACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.40
Consensus pattern (19 bp):
TACATTTATTCGATAAGTG
Found at i:91838197 original size:20 final size:20
Alignment explanation
Indices: 91838147--91838235 Score: 90
Period size: 20 Copynumber: 4.5 Consensus size: 20
91838137 CGGGGCTCCA
* *
91838147 AAGTGCAAACAAGGGCA-CA
1 AAGTGCAAACAGGGGCACCG
91838166 AATGTGCAAACAGGGGCACCG
1 AA-GTGCAAACAGGGGCACCG
* ** * *
91838187 TAGTGTGAACAGAGACACCG
1 AAGTGCAAACAGGGGCACCG
*
91838207 AAGTGCAAACAGGGGCATCG
1 AAGTGCAAACAGGGGCACCG
91838227 AAGTGCAAA
1 AAGTGCAAA
91838236 TCCCGTACAA
Statistics
Matches: 55, Mismatches: 13, Indels: 3
0.77 0.18 0.04
Matches are distributed among these distances:
19 2 0.04
20 51 0.93
21 2 0.04
ACGTcount: A:0.39, C:0.20, G:0.30, T:0.10
Consensus pattern (20 bp):
AAGTGCAAACAGGGGCACCG
Found at i:91839350 original size:4 final size:4
Alignment explanation
Indices: 91839336--91839376 Score: 73
Period size: 4 Copynumber: 10.2 Consensus size: 4
91839326 GAATGAATCA
*
91839336 TCTT TCCT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT T
1 TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT T
91839377 TTTATTCTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (4 bp):
TCTT
Found at i:91841783 original size:12 final size:12
Alignment explanation
Indices: 91841766--91841797 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
91841756 CAAATCAAGC
91841766 CAAAAGAATGTT
1 CAAAAGAATGTT
91841778 CAAAAGAATGTT
1 CAAAAGAATGTT
91841790 CAAAAGAA
1 CAAAAGAA
91841798 CAGAATAGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.56, C:0.09, G:0.16, T:0.19
Consensus pattern (12 bp):
CAAAAGAATGTT
Found at i:91843726 original size:29 final size:29
Alignment explanation
Indices: 91843693--91843749 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
91843683 TTTACAACTC
91843693 ACATAACTGATAGCTCATACTTGACAGAG
1 ACATAACTGATAGCTCATACTTGACAGAG
91843722 ACATAACTGATAGCTCATACTTGACAGA
1 ACATAACTGATAGCTCATACTTGACAGA
91843750 CTTATTAAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.39, C:0.21, G:0.16, T:0.25
Consensus pattern (29 bp):
ACATAACTGATAGCTCATACTTGACAGAG
Found at i:91843847 original size:28 final size:28
Alignment explanation
Indices: 91843809--91843881 Score: 92
Period size: 28 Copynumber: 2.6 Consensus size: 28
91843799 TCTGACAGAT
* * *
91843809 TTCCACTTATAATATAGTTCCAATGAAC
1 TTCCACATATAAGATAGTCCCAATGAAC
* **
91843837 TTTCACATATAAGATAGTCCCAATGGTC
1 TTCCACATATAAGATAGTCCCAATGAAC
91843865 TTCCACATATAAGATAG
1 TTCCACATATAAGATAG
91843882 CCTTGACGAA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.36, C:0.21, G:0.11, T:0.33
Consensus pattern (28 bp):
TTCCACATATAAGATAGTCCCAATGAAC
Found at i:91849937 original size:36 final size:36
Alignment explanation
Indices: 91849886--91849954 Score: 129
Period size: 36 Copynumber: 1.9 Consensus size: 36
91849876 TGTGTTTTAG
*
91849886 AATTCGAAGGTAGTTGGGAGAAATACCGTTGGTCGA
1 AATTCGAAGGCAGTTGGGAGAAATACCGTTGGTCGA
91849922 AATTCGAAGGCAGTTGGGAGAAATACCGTTGGT
1 AATTCGAAGGCAGTTGGGAGAAATACCGTTGGT
91849955 TGAATTTGCT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.30, C:0.12, G:0.33, T:0.25
Consensus pattern (36 bp):
AATTCGAAGGCAGTTGGGAGAAATACCGTTGGTCGA
Found at i:91850396 original size:36 final size:36
Alignment explanation
Indices: 91850349--91850420 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
91850339 ATCAAAGTTA
91850349 GAAAGGATCCACAATGTATTTCATGTGTCGATGTTG
1 GAAAGGATCCACAATGTATTTCATGTGTCGATGTTG
91850385 GAAAGGATCCACAATGTATTTCATGTGTCGATGTTG
1 GAAAGGATCCACAATGTATTTCATGTGTCGATGTTG
91850421 CAACGATATC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.33
Consensus pattern (36 bp):
GAAAGGATCCACAATGTATTTCATGTGTCGATGTTG
Found at i:91855331 original size:45 final size:45
Alignment explanation
Indices: 91855267--91855525 Score: 266
Period size: 45 Copynumber: 5.9 Consensus size: 45
91855257 TAGGATTCTG
* * * *
91855267 ATATGTTTTTTCGTGTAAGACCCCGTCTAGGACGTTGGCATCAAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
*
91855312 ATATGTGTTTTGGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
*
91855357 ATATGTGTTTTCGTGTAAGACCACGTTTGGGACGTTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* * * * * *
91855402 ATATGTGGTTACGTGTAAGACCATGTCTGGGACATCGACAT---T
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* *
91855444 GTAT-TG-ATTCGTGTAAGACC-CTGTCTGGGACAG-TGGCATCG--
1 ATATGTGTTTTCGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGAT
* * ** *
91855485 ATATGAGATAGCATGTAAGACCACGTCTGGGACGTTGGCAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCAT
91855526 TGTTCATATA
Statistics
Matches: 179, Mismatches: 27, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
40 25 0.14
41 5 0.03
42 6 0.03
43 25 0.14
44 1 0.01
45 117 0.65
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (45 bp):
ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
Found at i:91864259 original size:30 final size:30
Alignment explanation
Indices: 91864215--91864277 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
91864205 ACTTAACAAG
*
91864215 CAAATGCCTCTAAAATAATAACATAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
* * *
91864245 CAAATGTCTTTAAAATAATAACAAAATTTA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
91864275 CAA
1 CAA
91864278 TAAAATAAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.54, C:0.14, G:0.03, T:0.29
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:91864352 original size:11 final size:11
Alignment explanation
Indices: 91864315--91864353 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
91864305 CAATAACAAC
91864315 AAATAGTAGCA
1 AAATAGTAGCA
* * *
91864326 ACATAATAGTA
1 AAATAGTAGCA
91864337 AAATAGTAGCA
1 AAATAGTAGCA
91864348 AAATAG
1 AAATAG
91864354 GGAGAAAATA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.56, C:0.08, G:0.15, T:0.21
Consensus pattern (11 bp):
AAATAGTAGCA
Found at i:91866932 original size:40 final size:40
Alignment explanation
Indices: 91866849--91866940 Score: 125
Period size: 40 Copynumber: 2.3 Consensus size: 40
91866839 TATTCGAATG
* *
91866849 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACT
* *
91866889 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGACT
91866929 ATATCC-GGCTAA
1 ATATCCGGGCTAA
91866941 ATCTCGAAGA
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
39 6 0.13
40 39 0.83
41 2 0.04
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACT
Found at i:91869204 original size:22 final size:22
Alignment explanation
Indices: 91869179--91869235 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
91869169 CCTACCATCA
* *
91869179 ATGTCATGACACCAGTCATGTG
1 ATGTCATGACACCAGCCATGGG
*
91869201 ATGTC-TCGACACTAGCCATGGG
1 ATGTCAT-GACACCAGCCATGGG
*
91869223 ATGTCACGACACC
1 ATGTCATGACACC
91869236 CAACCTAGAC
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
21 1 0.04
22 27 0.96
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (22 bp):
ATGTCATGACACCAGCCATGGG
Found at i:91871764 original size:29 final size:29
Alignment explanation
Indices: 91871729--91871802 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
91871719 GTTGTGAGAT
* *
91871729 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
91871758 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
91871787 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
91871803 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:91877114 original size:21 final size:21
Alignment explanation
Indices: 91877090--91877131 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
91877080 AAAATAAAGA
*
91877090 TAATTAATCATATCAGATCAT
1 TAATTAATCAAATCAGATCAT
* *
91877111 TAATTGATCAAATCTGATCAT
1 TAATTAATCAAATCAGATCAT
91877132 GCATGCAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.40, C:0.14, G:0.07, T:0.38
Consensus pattern (21 bp):
TAATTAATCAAATCAGATCAT
Found at i:91879537 original size:3 final size:3
Alignment explanation
Indices: 91879524--91879557 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
91879514 ACAAAGTTAA
91879524 AAT AA- AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
91879558 GAGAACGGTG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:91882615 original size:19 final size:20
Alignment explanation
Indices: 91882580--91882620 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
91882570 TTATTTTTAT
* *
91882580 AAATTTTTAAAACAATATTA
1 AAATTTATAAAACAATACTA
91882600 AAATTTATAAAA-AATACTA
1 AAATTTATAAAACAATACTA
91882619 AA
1 AA
91882621 TAAATTTCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (20 bp):
AAATTTATAAAACAATACTA
Found at i:91896792 original size:22 final size:22
Alignment explanation
Indices: 91896765--91896809 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
91896755 ATTGAGATGA
91896765 TTTTTATCAATTAAAACTTTAT
1 TTTTTATCAATTAAAACTTTAT
91896787 TTTTTATCAATTAAAACTTTAT
1 TTTTTATCAATTAAAACTTTAT
91896809 T
1 T
91896810 CTATCACCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.36, C:0.09, G:0.00, T:0.56
Consensus pattern (22 bp):
TTTTTATCAATTAAAACTTTAT
Found at i:91901570 original size:22 final size:22
Alignment explanation
Indices: 91901545--91901588 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
91901535 TATTGTGGGA
*
91901545 AGGACATTTGTTTGAAGAATAT
1 AGGACATTTGTTCGAAGAATAT
91901567 AGGACATTTGTTCGAAGAATAT
1 AGGACATTTGTTCGAAGAATAT
91901589 CCATCAAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.36, C:0.07, G:0.23, T:0.34
Consensus pattern (22 bp):
AGGACATTTGTTCGAAGAATAT
Found at i:91906356 original size:30 final size:30
Alignment explanation
Indices: 91906320--91906378 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
91906310 TGAAGTATTT
*
91906320 TAAAAATTTGGTTG-CTCTTTTTGTAAATAA
1 TAAAAATTT-GATGCCTCTTTTTGTAAATAA
91906350 TAAAAATTTGATGCCTCTTTTTGTAAATA
1 TAAAAATTTGATGCCTCTTTTTGTAAATA
91906379 TTTTCAAAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 3 0.11
30 24 0.89
ACGTcount: A:0.34, C:0.08, G:0.12, T:0.46
Consensus pattern (30 bp):
TAAAAATTTGATGCCTCTTTTTGTAAATAA
Found at i:91912472 original size:64 final size:64
Alignment explanation
Indices: 91912391--91912574 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
91912381 AGACATTATG
* *
91912391 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * * *
91912455 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACGCCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
91912520 AA
63 AA
* * * *
91912522 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
91912575 CGAACTATAT
Statistics
Matches: 96, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 21 0.22
65 8 0.08
66 16 0.17
67 30 0.31
68 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:91915792 original size:68 final size:65
Alignment explanation
Indices: 91915586--91915835 Score: 215
Period size: 68 Copynumber: 3.8 Consensus size: 65
91915576 CATAATTTTG
* * *
91915586 GCTCTCTTGTACACATGGTGTACACATAGTATCAC-CGATGTGACCTAGCCA-CTTTA-TCTCGT
1 GCTCTCTTGTACACATGGTGTACACATAGTATCACAC-ATGCGACCTAGCTACCTCTATTCTCGT
91915648 A
65 A
** * * * * * * * *
91915649 GCTCTCTTGTTTACACGGTGTCCTTCACTTGGAACCACACATGCAACCTAGCTACATCTA-TCTC
1 GCTCTCTTGTACACATGGTG---TACACATAGTATCACACATGCGACCTAGCTACCTCTATTCTC
91915713 GTA
63 GTA
*
91915716 GCTCTCTTGT-CTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACCTCATAATGTCT
1 GCTCTCTTGTAC-ACATGGTGTACACATAGTATCACACATGCGACCTAGCTACCTC-T-AT-TCT
91915780 CGTA
62 CGTA
* * * *
91915784 GCTCTCTTGTACACATGGTATACATCA-CGTATTACACATGTGACCTAGCTAC
1 GCTCTCTTGTACACATGGTGTACA-CATAGTATCACACATGCGACCTAGCTAC
91915836 ATACCATCTG
Statistics
Matches: 147, Mismatches: 28, Indels: 19
0.76 0.14 0.10
Matches are distributed among these distances:
63 17 0.12
64 27 0.18
65 1 0.01
66 22 0.15
67 28 0.19
68 49 0.33
69 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.31
Consensus pattern (65 bp):
GCTCTCTTGTACACATGGTGTACACATAGTATCACACATGCGACCTAGCTACCTCTATTCTCGTA
Found at i:91916091 original size:42 final size:42
Alignment explanation
Indices: 91916032--91916113 Score: 164
Period size: 42 Copynumber: 2.0 Consensus size: 42
91916022 TTCCATGTCG
91916032 AATTAATATTGAACATTTAAATCATCATAATTATACTTACCA
1 AATTAATATTGAACATTTAAATCATCATAATTATACTTACCA
91916074 AATTAATATTGAACATTTAAATCATCATAATTATACTTAC
1 AATTAATATTGAACATTTAAATCATCATAATTATACTTAC
91916114 TTTCAACACC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.45, C:0.13, G:0.02, T:0.39
Consensus pattern (42 bp):
AATTAATATTGAACATTTAAATCATCATAATTATACTTACCA
Found at i:91924165 original size:20 final size:20
Alignment explanation
Indices: 91924140--91924192 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
91924130 ATAATTTTAC
*
91924140 AAAATTAAAAAATTGATAAA
1 AAAATTTAAAAATTGATAAA
91924160 AAAATTTAAAAATTGATAAA
1 AAAATTTAAAAATTGATAAA
*
91924180 ATAATTTAAAAAT
1 AAAATTTAAAAAT
91924193 ATTTTTTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (20 bp):
AAAATTTAAAAATTGATAAA
Found at i:91927240 original size:15 final size:15
Alignment explanation
Indices: 91927220--91927249 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
91927210 AACCTCTTCA
91927220 CTAGATCACTATAAC
1 CTAGATCACTATAAC
91927235 CTAGATCACTATAAC
1 CTAGATCACTATAAC
91927250 TTTAGATAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.27, G:0.07, T:0.27
Consensus pattern (15 bp):
CTAGATCACTATAAC
Found at i:91929123 original size:22 final size:22
Alignment explanation
Indices: 91929098--91929163 Score: 114
Period size: 22 Copynumber: 3.0 Consensus size: 22
91929088 ATTACCATTC
91929098 ATTTGTGGATAAATTGTCAGTA
1 ATTTGTGGATAAATTGTCAGTA
91929120 ATTTGTGGATAAATTGTCAGTA
1 ATTTGTGGATAAATTGTCAGTA
* *
91929142 ATTTGTGGATAAACTGCCAGTA
1 ATTTGTGGATAAATTGTCAGTA
91929164 CTCTAAACAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.32, C:0.08, G:0.23, T:0.38
Consensus pattern (22 bp):
ATTTGTGGATAAATTGTCAGTA
Found at i:91930694 original size:23 final size:23
Alignment explanation
Indices: 91930665--91930709 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
91930655 GGAAATTGAG
**
91930665 CTTGAGTTTTAAGGAAAAATTCC
1 CTTGAGTTCCAAGGAAAAATTCC
91930688 CTTGAGTTCCAAGGAAAAATTC
1 CTTGAGTTCCAAGGAAAAATTC
91930710 ACTAACTCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.31
Consensus pattern (23 bp):
CTTGAGTTCCAAGGAAAAATTCC
Found at i:91938257 original size:25 final size:25
Alignment explanation
Indices: 91938223--91938272 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
91938213 ATATACTATG
91938223 TTCATTTCCTAAGCTACCCCTTTAA
1 TTCATTTCCTAAGCTACCCCTTTAA
91938248 TTCATTTCCTAAGCTACCCCTTTAA
1 TTCATTTCCTAAGCTACCCCTTTAA
91938273 ACCTCTCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.32, G:0.04, T:0.40
Consensus pattern (25 bp):
TTCATTTCCTAAGCTACCCCTTTAA
Found at i:91939861 original size:19 final size:19
Alignment explanation
Indices: 91939837--91939874 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
91939827 AGGTACACAG
91939837 TAAACATTATAGGTTAGGT
1 TAAACATTATAGGTTAGGT
91939856 TAAACATTATAGGTTAGGT
1 TAAACATTATAGGTTAGGT
91939875 CTATTTACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.05, G:0.21, T:0.37
Consensus pattern (19 bp):
TAAACATTATAGGTTAGGT
Found at i:91944091 original size:30 final size:30
Alignment explanation
Indices: 91944056--91944113 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
91944046 TTAGTATGAA
91944056 GACAGGAAACCAAAGAAACAATAGCTTACC
1 GACAGGAAACCAAAGAAACAATAGCTTACC
91944086 GACAGGAAACCAAAGAAACAATAGCTTA
1 GACAGGAAACCAAAGAAACAATAGCTTA
91944114 TCTCTACGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.52, C:0.21, G:0.17, T:0.10
Consensus pattern (30 bp):
GACAGGAAACCAAAGAAACAATAGCTTACC
Found at i:91945773 original size:24 final size:24
Alignment explanation
Indices: 91945745--91945794 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
91945735 ATTTATTCAA
91945745 GAATAAAAAAAATCCAACTGATTT
1 GAATAAAAAAAATCCAACTGATTT
91945769 GAATAAAAAAAATCCAACTGATTT
1 GAATAAAAAAAATCCAACTGATTT
91945793 GA
1 GA
91945795 GCTTTAGATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.54, C:0.12, G:0.10, T:0.24
Consensus pattern (24 bp):
GAATAAAAAAAATCCAACTGATTT
Found at i:91949333 original size:38 final size:38
Alignment explanation
Indices: 91949207--91949333 Score: 182
Period size: 38 Copynumber: 3.3 Consensus size: 38
91949197 AACCGTACTA
*
91949207 TTATTCAGGCTTAGTGCCTAGCAGGTTTAGTGCTGGTG
1 TTATTCAGGCTTAGTGCCTAGCAGGCTTAGTGCTGGTG
* *
91949245 TTATTTAGGCTTAGTGCCTAGCAGGCTTAGTACTGGTG
1 TTATTCAGGCTTAGTGCCTAGCAGGCTTAGTGCTGGTG
* * * *
91949283 TTTTTCAGGCTTAGTGCCTACCAGGCTTAGTGCCGATG
1 TTATTCAGGCTTAGTGCCTAGCAGGCTTAGTGCTGGTG
*
91949321 TTATTCAAGCTTA
1 TTATTCAGGCTTA
91949334 TTTCTAGTGT
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 78 1.00
ACGTcount: A:0.18, C:0.18, G:0.27, T:0.37
Consensus pattern (38 bp):
TTATTCAGGCTTAGTGCCTAGCAGGCTTAGTGCTGGTG
Found at i:91951239 original size:75 final size:75
Alignment explanation
Indices: 91951112--91951262 Score: 275
Period size: 75 Copynumber: 2.0 Consensus size: 75
91951102 CCCCTTTTTA
* * *
91951112 ACACTTATACTTAATGAATATTAAAAACAAAGTAAAACATAATTATGTTCTCATAAATGATCTTT
1 ACACTTATACTCAATGAATATTAAAAACAAAGTAAAACATAATTATGCTCTCATAAATCATCTTT
91951177 GCAAAAACTC
66 GCAAAAACTC
91951187 ACACTTATACTCAATGAATATTAAAAACAAAGTAAAACATAATTATGCTCTCATAAATCATCTTT
1 ACACTTATACTCAATGAATATTAAAAACAAAGTAAAACATAATTATGCTCTCATAAATCATCTTT
91951252 GCAAAAACTC
66 GCAAAAACTC
91951262 A
1 A
91951263 TTGCATGGAA
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
75 73 1.00
ACGTcount: A:0.47, C:0.17, G:0.06, T:0.30
Consensus pattern (75 bp):
ACACTTATACTCAATGAATATTAAAAACAAAGTAAAACATAATTATGCTCTCATAAATCATCTTT
GCAAAAACTC
Found at i:91959890 original size:22 final size:22
Alignment explanation
Indices: 91959865--91959908 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
91959855 GGTAAGAAAA
*
91959865 TTATTTAATTGAAAAAATTAAT
1 TTATCTAATTGAAAAAATTAAT
**
91959887 TTATCTAATTGAATTAATTAAT
1 TTATCTAATTGAAAAAATTAAT
91959909 AAATAATGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (22 bp):
TTATCTAATTGAAAAAATTAAT
Found at i:91963241 original size:27 final size:26
Alignment explanation
Indices: 91963204--91963315 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
91963194 AGCATGGCTG
* *
91963204 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
91963230 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
91963258 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
91963285 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
91963312 CCAG
1 CCAG
91963316 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 5 0.07
27 55 0.72
28 16 0.21
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:91963263 original size:54 final size:54
Alignment explanation
Indices: 91963204--91963315 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
91963194 AGCATGGCTG
*
91963204 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAACCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAACCA
* * * * *
91963258 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAACCA
91963312 CCAG
1 CCAG
91963316 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAACCA
Found at i:91969787 original size:27 final size:26
Alignment explanation
Indices: 91969750--91969861 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
91969740 AGTATGGCTG
* *
91969750 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
91969776 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
91969804 CCAGAACAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
91969831 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
91969858 CCAG
1 CCAG
91969862 GACGCTTCCT
Statistics
Matches: 78, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
26 5 0.06
27 57 0.73
28 16 0.21
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:91969809 original size:54 final size:54
Alignment explanation
Indices: 91969750--91969861 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
91969740 AGTATGGCTG
*
91969750 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * * *
91969804 CCAGAACAGATATTTGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
91969858 CCAG
1 CCAG
91969862 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:91986244 original size:6 final size:6
Alignment explanation
Indices: 91986235--91986260 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
91986225 TTAAAATTGC
91986235 AAATAA AAATAA AAATAA AAATAA AA
1 AAATAA AAATAA AAATAA AAATAA AA
91986261 TTTTCTTCTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:91994426 original size:44 final size:42
Alignment explanation
Indices: 91994302--91994448 Score: 143
Period size: 42 Copynumber: 3.4 Consensus size: 42
91994292 GTCCATGATG
* * * * *
91994302 TGGTCTTACATGCAATCAAATATCGATGTCACTGTCCCAGATA
1 TGGTCTTACACGAAATCAAATA-CGATGCCAATGTCCCAGACA
* *
91994345 GGGTCTTACACGAAATCAAATACGATGCCGATGTCCCAGACA
1 TGGTCTTACACGAAATCAAATACGATGCCAATGTCCCAGACA
* * * *
91994387 TGGTCTTACATGTAAATCTCAAAT-TGATGCCAATGTCCCAAACG
1 TGGTCTTACACG-AAA--TCAAATACGATGCCAATGTCCCAGACA
*
91994431 TGGTCTTACACAAAATCA
1 TGGTCTTACACGAAATCA
91994449 CACATCAAAA
Statistics
Matches: 86, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
41 3 0.03
42 26 0.30
43 25 0.29
44 26 0.30
45 6 0.07
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.27
Consensus pattern (42 bp):
TGGTCTTACACGAAATCAAATACGATGCCAATGTCCCAGACA
Found at i:92006284 original size:15 final size:17
Alignment explanation
Indices: 92006249--92006289 Score: 59
Period size: 15 Copynumber: 2.5 Consensus size: 17
92006239 TATGTTAAAC
92006249 TTTATATTTTATGTATTA
1 TTTAT-TTTTATGTATTA
92006267 TTTATTTTTAT-T-TTA
1 TTTATTTTTATGTATTA
92006282 TTTATTTT
1 TTTATTTT
92006290 ATGATTTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 11 0.48
16 1 0.04
17 6 0.26
18 5 0.22
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (17 bp):
TTTATTTTTATGTATTA
Found at i:92008798 original size:19 final size:19
Alignment explanation
Indices: 92008774--92008820 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
92008764 CTTTCTTTCT
92008774 TTTGCATT-CATTCCATGCA
1 TTTGCATTGCATTCCAT-CA
*
92008793 TTTGCATTGCATTGCATCA
1 TTTGCATTGCATTCCATCA
92008812 TTTGCATTG
1 TTTGCATTG
92008821 GATTTTCACA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 19 0.73
20 7 0.27
ACGTcount: A:0.19, C:0.21, G:0.15, T:0.45
Consensus pattern (19 bp):
TTTGCATTGCATTCCATCA
Found at i:92014022 original size:88 final size:88
Alignment explanation
Indices: 92013915--92014166 Score: 405
Period size: 88 Copynumber: 2.9 Consensus size: 88
92013905 GTTGAAATCA
* * * *
92013915 ACAATTCTTATCTCATTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGTGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
92013980 TGGCATTGGAGCGGCTCGAAGCC
66 TGGCATTGGAGCGGCTCGAAGCC
* * * *
92014003 ACAGTTTGTATCTCCTTGAAGTTCCAGTGAAGAAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGTGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
92014068 TGGCATTGGAGCGGCTCGAAGCC
66 TGGCATTGGAGCGGCTCGAAGCC
* * *
92014091 ACAATTCGTATCTCCTTGAAGTTCCAATAGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGTGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
92014156 TGGCATTGGAG
66 TGGCATTGGAG
92014167 TAGACTGAAT
Statistics
Matches: 149, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
88 149 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.27
Consensus pattern (88 bp):
ACAATTCGTATCTCCTTGAAGTTCCAGTGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
TGGCATTGGAGCGGCTCGAAGCC
Found at i:92014170 original size:44 final size:44
Alignment explanation
Indices: 92013943--92014170 Score: 183
Period size: 44 Copynumber: 5.2 Consensus size: 44
92013933 AAGTTTCAGC
92013943 GGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCATT
1 GGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCATT
** * * * * * * * ** *
92013987 GGAGCGGCTCGAAGCCAC-AGTTTGTATCTCCTTGAAGTTCCAGT
1 GGAGTAGATCGAAGCTACAAATCTCT-TCTCCCTGAAATGGCATT
* *
92014031 GAAGAAGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCATT
1 GGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCATT
** * * * * ** *
92014075 GGAGCGGCTCGAAGCCAC-AAT-TCGTATCTCCTTGAAGTTCCAAT
1 GGAGTAGATCGAAGCTACAAATCTC-T-TCTCCCTGAAATGGCATT
* *
92014119 AGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGGCATT
1 GGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCATT
92014163 GGAGTAGA
1 GGAGTAGA
92014171 CTGAATATAC
Statistics
Matches: 131, Mismatches: 47, Indels: 12
0.69 0.25 0.06
Matches are distributed among these distances:
42 2 0.02
43 8 0.06
44 111 0.85
45 8 0.06
46 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (44 bp):
GGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATGGCATT
Found at i:92014514 original size:133 final size:133
Alignment explanation
Indices: 92014184--92014522 Score: 369
Period size: 133 Copynumber: 2.5 Consensus size: 133
92014174 AATATACCAA
* * *
92014184 TCCTACCTCCCTGAAGTTGTAGTGGAGCGGATCAAAGATAGCAAATCTTATCTCTTTGAAATTGC
1 TCCTATCTCCCTGAAGTTGTAGTGGAGCGGATCAAAGATAGC-AATCTTATCTCCTTGAAGTTGC
* * * *
92014249 AATAGAGTAGAGTTAAAGCTATAAACCTTATCTCCTTGAAGTTGCAGTGGGGCAGGTTGAAATTA
65 AATAGAGTAGAGTTAAAGCCACAAACATTATCTCCTTGAAGTTGCAGTGGGGCAAGTTGAAATTA
*
92014314 CGAG
130 CAAG
* * * * * ** *
92014318 TCCTATCTCCCTGAAGTTGCAGTGGAGCGGATCAAAGATGGTGAATATTATCTTCAAGAAGTTGT
1 TCCTATCTCCCTGAAGTTGTAGTGGAGCGGATCAAAGATAG-CAATCTTATCTCCTTGAAGTTGC
* * * *
92014383 AGTGGAGTAGA-TTGAAGCCACAAACATTATC-CCTCTGAAGTTGCAGTGGGGCAAGTTGAAGTT
65 AATAGAGTAGAGTTAAAGCCACAAACATTATCTCCT-TGAAGTTGCAGTGGGGCAAGTTGAAATT
92014446 ACAAG
129 ACAAG
* * * * * * *
92014451 TCTTATTTCCCTGAAATTGTAGTGGAGCAGA-CTGAAGAAAGCATATCTTATCTCCTTGTAGTTG
1 TCCTATCTCCCTGAAGTTGTAGTGGAGCGGATC-AAAGATAGCA-ATCTTATCTCCTTGAAGTTG
92014515 CAATAGAG
64 CAATAGAG
92014523 CAAATCAAGC
Statistics
Matches: 164, Mismatches: 37, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
132 5 0.03
133 97 0.59
134 62 0.38
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (133 bp):
TCCTATCTCCCTGAAGTTGTAGTGGAGCGGATCAAAGATAGCAATCTTATCTCCTTGAAGTTGCA
ATAGAGTAGAGTTAAAGCCACAAACATTATCTCCTTGAAGTTGCAGTGGGGCAAGTTGAAATTAC
AAG
Found at i:92018928 original size:10 final size:10
Alignment explanation
Indices: 92018913--92018967 Score: 51
Period size: 10 Copynumber: 5.6 Consensus size: 10
92018903 TCTTTCCCCC
92018913 TTTTCTTTCT
1 TTTTCTTTCT
92018923 TTTTCTTTCT
1 TTTTCTTTCT
* *
92018933 GTTT-TTTGT
1 TTTTCTTTCT
*
92018942 TTTGGCTTTC-
1 TTT-TCTTTCT
*
92018952 TTTTCTTTTT
1 TTTTCTTTCT
92018962 TTTTCT
1 TTTTCT
92018968 ATTTCTTTTA
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
9 10 0.29
10 22 0.63
11 3 0.09
ACGTcount: A:0.00, C:0.15, G:0.07, T:0.78
Consensus pattern (10 bp):
TTTTCTTTCT
Found at i:92018986 original size:16 final size:15
Alignment explanation
Indices: 92018967--92019000 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
92018957 TTTTTTTTTC
*
92018967 TATTTCTTTTATTACT
1 TATTTATTTTATTA-T
92018983 TATTTATTTTATTAT
1 TATTTATTTTATTAT
92018998 TAT
1 TAT
92019001 AATAATATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.71
Consensus pattern (15 bp):
TATTTATTTTATTAT
Found at i:92030092 original size:28 final size:29
Alignment explanation
Indices: 92030039--92030097 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 29
92030029 CTGAAATATT
92030039 ATTAAATAATTAGAAAAGAATCAT-AATG
1 ATTAAATAATTAGAAAAGAATCATAAATG
* *
92030067 ATTAAATAATTGGAAAAGGA-CTATAAATG
1 ATTAAATAATTAGAAAAGAATC-ATAAATG
92030096 AT
1 AT
92030098 GTGGTGAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 1 0.04
28 20 0.74
29 6 0.22
ACGTcount: A:0.54, C:0.03, G:0.14, T:0.29
Consensus pattern (29 bp):
ATTAAATAATTAGAAAAGAATCATAAATG
Found at i:92035532 original size:57 final size:58
Alignment explanation
Indices: 92035409--92035562 Score: 152
Period size: 57 Copynumber: 2.7 Consensus size: 58
92035399 CTTATTATAG
* * * * *
92035409 AAAGGATTTAGCCCAGACGGGTAATCCTA-ATATAAGCCCTCTCGAGCATATGTTATGAA
1 AAAGGATTTAGCCCGGACAGGTAATCC-AGAT-TAAGCTCTCTAGAGCATATGTCATGAA
** *
92035468 TTA-GATTTAGCCCGGACAGGTAATCCAGATTAAGCTCTTTAGAGCATATGTCAT-AA
1 AAAGGATTTAGCCCGGACAGGTAATCCAGATTAAGCTCTCTAGAGCATATGTCATGAA
* ** * *
92035524 AAAGGATTTAGCCCGAACTTGTAATCCTGACTAAGCTCT
1 AAAGGATTTAGCCCGGACAGGTAATCCAGATTAAGCTCT
92035563 ATTGAGTATA
Statistics
Matches: 78, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
56 3 0.04
57 51 0.65
58 23 0.29
59 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.28
Consensus pattern (58 bp):
AAAGGATTTAGCCCGGACAGGTAATCCAGATTAAGCTCTCTAGAGCATATGTCATGAA
Found at i:92036187 original size:22 final size:23
Alignment explanation
Indices: 92036151--92036202 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
92036141 TTGTATTTGG
*
92036151 TTTTTTATATGAATTTATTT-AT
1 TTTTTTAAATGAATTTATTTAAT
*
92036173 TTATTTTAAAT-AATTTTTTTAAT
1 TT-TTTTAAATGAATTTATTTAAT
92036196 TTTTTTA
1 TTTTTTA
92036203 CAATTATTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
22 15 0.58
23 11 0.42
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (23 bp):
TTTTTTAAATGAATTTATTTAAT
Found at i:92036971 original size:12 final size:12
Alignment explanation
Indices: 92036945--92036979 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
92036935 GTTGAAAATC
*
92036945 AAAAACAGAATAA
1 AAAAACA-AAGAA
92036958 AAAAACAAAGAA
1 AAAAACAAAGAA
92036970 AAAAACAAAG
1 AAAAACAAAG
92036980 GCCCAAAAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 14 0.67
13 7 0.33
ACGTcount: A:0.80, C:0.09, G:0.09, T:0.03
Consensus pattern (12 bp):
AAAAACAAAGAA
Found at i:92042161 original size:93 final size:93
Alignment explanation
Indices: 92042048--92042219 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
92042038 CGCCCATAAG
* *
92042048 CGAACTCGGACTCAACTCAACGAGCTAGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
92042113 ACGAGTTCAGATGCCTAGTTACATCTCA
66 ACGAGTTCAGATGCCTAGTTACATCTCA
* *
92042141 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
92042206 ACGAGTTCGGATGC
66 ACGAGTTCAGATGC
92042220 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTAGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCAGATGCCTAGTTACATCTCA
Found at i:92042213 original size:46 final size:46
Alignment explanation
Indices: 92042041--92042216 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
92042031 TGTAACCCGC
* * * *
92042041 CCATAAGCGAACTCGGACTCAACTCAACGAGCTAGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
92042087 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-G--GAC-A-TTCGCAT
*
92042137 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
92042180 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
92042217 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 2 0.02
46 61 0.56
47 27 0.25
48 2 0.02
49 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:92042235 original size:46 final size:46
Alignment explanation
Indices: 92042090--92042228 Score: 135
Period size: 47 Copynumber: 3.0 Consensus size: 46
92042080 TTCGCATCCA
*
92042090 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGC-CTAGTTA-CATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC
* * * * *
92042138 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA--
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATC
92042183 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
92042229 CTAGTGACAT
Statistics
Matches: 74, Mismatches: 10, Indels: 16
0.74 0.10 0.16
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 28 0.38
47 29 0.39
48 2 0.03
49 4 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
Found at i:92045009 original size:46 final size:46
Alignment explanation
Indices: 92044904--92045021 Score: 157
Period size: 46 Copynumber: 2.6 Consensus size: 46
92044894 TGTCTTCGAC
** * *
92044904 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATAAT
* *
92044950 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCCATATA-ACTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATA-TAAT
*
92044996 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
92045022 CTGTCCTGTC
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
45 1 0.02
46 62 0.98
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (46 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATAAT
Found at i:92046159 original size:31 final size:32
Alignment explanation
Indices: 92046095--92046165 Score: 126
Period size: 32 Copynumber: 2.2 Consensus size: 32
92046085 ATAGAATTTC
*
92046095 ATCACGAAATTTTCACACAATCATGCAATCAT
1 ATCATGAAATTTTCACACAATCATGCAATCAT
92046127 ATCATGAAATTTTCACACAATCATG-AATCAT
1 ATCATGAAATTTTCACACAATCATGCAATCAT
92046158 ATCATGAA
1 ATCATGAA
92046166 CCTCAAAATA
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
31 14 0.37
32 24 0.63
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.30
Consensus pattern (32 bp):
ATCATGAAATTTTCACACAATCATGCAATCAT
Found at i:92049368 original size:46 final size:46
Alignment explanation
Indices: 92049263--92049380 Score: 157
Period size: 46 Copynumber: 2.6 Consensus size: 46
92049253 TGTCTTCGAC
** * *
92049263 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATAAT
* *
92049309 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCCATATA-ACTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATA-TAAT
*
92049355 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
92049381 CTGTCTTGTC
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
45 1 0.02
46 62 0.98
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (46 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATAAT
Found at i:92052326 original size:30 final size:30
Alignment explanation
Indices: 92052292--92052351 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
92052282 ACTTAACAAG
92052292 CAAATACATCTAAAATAATAACAAAATTAA
1 CAAATACATCTAAAATAATAACAAAATTAA
* * *
92052322 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATACATCTAAAATAATAACAAAATTAA
92052352 TAATAAAGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.60, C:0.13, G:0.02, T:0.25
Consensus pattern (30 bp):
CAAATACATCTAAAATAATAACAAAATTAA
Found at i:92054139 original size:20 final size:20
Alignment explanation
Indices: 92054116--92054156 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
92054106 GATTTGATTC
* *
92054116 TAATTATATTTATTTATCTT
1 TAATTAAATGTATTTATCTT
92054136 TAATTAAATGTATTTATCTT
1 TAATTAAATGTATTTATCTT
92054156 T
1 T
92054157 TTAGAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (20 bp):
TAATTAAATGTATTTATCTT
Found at i:92054900 original size:46 final size:46
Alignment explanation
Indices: 92054827--92055002 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
92054817 CTAGACCAAT
92054827 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * * *
92054873 TTCGAACTCGTTGAGTTAAGTCTGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
92054918 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
92054966 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
92055003 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.58
47 25 0.24
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:92057622 original size:20 final size:18
Alignment explanation
Indices: 92057588--92057624 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
92057578 GCAACTCATA
92057588 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
92057606 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
92057625 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:92060468 original size:46 final size:44
Alignment explanation
Indices: 92060394--92060600 Score: 170
Period size: 46 Copynumber: 4.6 Consensus size: 44
92060384 GTCGATGCCG
* * *
92060394 TGTCCCAGACAGGTCTTACACT-GACACATGTAACCGT-GCTGACGCA
1 TGTCCCAGACATGTCTTACACTAG-CACATCT---CGTAGCCGACGCA
*
92060440 TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACACA
1 TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
* * * * *
92060484 TGTCCCGGACATGTCTGACATTGGCTAACATCTCG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTAGC--ACATCTCGTA-GCCGACGCA
* * * * *
92060530 TGTCCCAGACATGTCTTACACTGGCTC-TCATACTGTGGCTGATGCA
1 TGTCCCAGACATGTCTTACACTAGCACATC-T-C-GTAGCCGACGCA
92060576 TGTCCCAGACATGTCTTACACTAGC
1 TGTCCCAGACATGTCTTACACTAGC
92060601 CCTCGTCTCA
Statistics
Matches: 135, Mismatches: 17, Indels: 18
0.79 0.10 0.11
Matches are distributed among these distances:
43 5 0.04
44 30 0.22
45 2 0.01
46 97 0.72
47 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (44 bp):
TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
Found at i:92060620 original size:46 final size:44
Alignment explanation
Indices: 92060437--92060645 Score: 163
Period size: 46 Copynumber: 4.6 Consensus size: 44
92060427 CCGTGCTGAC
*
92060437 GCATGTCCCAGACATGTCTTACACTAGCACATC-TCGTA-GCCGAC
1 GCATGTCCCAGACATGTCTTACACTAGC-CATCATC-TATGCCGAT
* * * * * * * *
92060481 ACATGTCCCGGACATGTCTGACATTGGCTAACATCTCGAGGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATCATCT--ATGCCGAT
* * *
92060527 GCATGTCCCAGACATGTCTTACACTGGCTC-TCATACTGTGGCTGAT
1 GCATGTCCCAGACATGTCTTACACTAGC-CATCAT-CTAT-GCCGAT
* *
92060573 GCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAATGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATCATCT--ATGCCGAT
*
92060619 GCCATGTCCCATACATGGTCTTACACT
1 G-CATGTCCCAGACAT-GTCTTACACT
92060646 GGCACACAAA
Statistics
Matches: 131, Mismatches: 22, Indels: 20
0.76 0.13 0.12
Matches are distributed among these distances:
43 3 0.02
44 25 0.19
45 4 0.03
46 73 0.56
47 16 0.12
48 10 0.08
ACGTcount: A:0.22, C:0.32, G:0.20, T:0.26
Consensus pattern (44 bp):
GCATGTCCCAGACATGTCTTACACTAGCCATCATCTATGCCGAT
Found at i:92063574 original size:20 final size:18
Alignment explanation
Indices: 92063540--92063576 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
92063530 GCAACTCATA
92063540 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
92063558 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
92063577 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:92064655 original size:9 final size:9
Alignment explanation
Indices: 92064643--92064669 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
92064633 TCCCCTTTAC
92064643 TATTATTTT
1 TATTATTTT
92064652 TATTATTTT
1 TATTATTTT
92064661 TATTATTTT
1 TATTATTTT
92064670 ACAGGGAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (9 bp):
TATTATTTT
Found at i:92066465 original size:13 final size:13
Alignment explanation
Indices: 92066443--92066467 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
92066433 TTAATAAATT
92066443 TAATTAAAATTTC
1 TAATTAAAATTTC
92066456 TAATTAAAATTT
1 TAATTAAAATTT
92066468 TTTTCAATCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (13 bp):
TAATTAAAATTTC
Found at i:92078935 original size:16 final size:16
Alignment explanation
Indices: 92078894--92078952 Score: 66
Period size: 16 Copynumber: 3.6 Consensus size: 16
92078884 TAAAGCCCAA
*
92078894 TATTATAACAAACTTAAT
1 TATTATAA-AAA-ATAAT
92078912 TATTATAATAAAAT-AT
1 TATTATAA-AAAATAAT
*
92078928 TATCATAAAAAATAAT
1 TATTATAAAAAATAAT
92078944 TATTATAAA
1 TATTATAAA
92078953 GAGAACGACT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
15 5 0.14
16 19 0.53
17 1 0.03
18 11 0.31
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (16 bp):
TATTATAAAAAATAAT
Found at i:92083548 original size:36 final size:38
Alignment explanation
Indices: 92083508--92083586 Score: 101
Period size: 37 Copynumber: 2.1 Consensus size: 38
92083498 ATTAATTAAC
92083508 ATTTT-AAATTAAAAAAATTAAAAAA-ATATAAAAAT-T
1 ATTTTAAAATTAAAAAAATTAAAAAATA-ATAAAAATAT
** *
92083544 ATTTTAAAATTAAAATTATTAAAAAATAATAAATATAT
1 ATTTTAAAATTAAAAAAATTAAAAAATAATAAAAATAT
92083582 ATTTT
1 ATTTT
92083587 TAATATCTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
36 5 0.14
37 25 0.68
38 7 0.19
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (38 bp):
ATTTTAAAATTAAAAAAATTAAAAAATAATAAAAATAT
Found at i:92083569 original size:17 final size:17
Alignment explanation
Indices: 92083513--92083570 Score: 53
Period size: 17 Copynumber: 3.2 Consensus size: 17
92083503 TTAACATTTT
**
92083513 AAATTAAAAAAATTAAAA
1 AAATTAAAATTATT-AAA
**
92083531 AAATATAAAAATTATTTTA
1 AAAT-T-AAAATTATTAAA
92083550 AAATTAAAATTATTAAA
1 AAATTAAAATTATTAAA
92083567 AAAT
1 AAAT
92083571 AATAAATATA
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
17 14 0.44
18 5 0.16
19 6 0.19
20 7 0.22
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
AAATTAAAATTATTAAA
Found at i:92088144 original size:18 final size:20
Alignment explanation
Indices: 92088121--92088159 Score: 64
Period size: 18 Copynumber: 2.0 Consensus size: 20
92088111 AAGTATCGAG
92088121 TATCAATA-ATTTTC-AAAA
1 TATCAATACATTTTCTAAAA
92088139 TATCAATACATTTTCTAAAA
1 TATCAATACATTTTCTAAAA
92088159 T
1 T
92088160 TGATGCCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 8 0.42
19 6 0.32
20 5 0.26
ACGTcount: A:0.46, C:0.13, G:0.00, T:0.41
Consensus pattern (20 bp):
TATCAATACATTTTCTAAAA
Found at i:92089406 original size:15 final size:15
Alignment explanation
Indices: 92089386--92089415 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
92089376 GTGATGAGAA
*
92089386 ATATGTGAAATAATG
1 ATATGTGAAACAATG
92089401 ATATGTGAAACAATG
1 ATATGTGAAACAATG
92089416 TACATATGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.03, G:0.20, T:0.30
Consensus pattern (15 bp):
ATATGTGAAACAATG
Found at i:92093223 original size:23 final size:23
Alignment explanation
Indices: 92093169--92093224 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
92093159 CGCTTCTGCG
* * *
92093169 GTGTTCTATTATCCGCTTTAACA
1 GTGTTCTGTTATCCACTTCAACA
* *
92093192 GTGTCCTGTTATCCACTTCGACA
1 GTGTTCTGTTATCCACTTCAACA
92093215 GTGTTCTGTT
1 GTGTTCTGTT
92093225 CTGTTCCATA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.16, C:0.23, G:0.18, T:0.43
Consensus pattern (23 bp):
GTGTTCTGTTATCCACTTCAACA
Found at i:92096244 original size:15 final size:15
Alignment explanation
Indices: 92096224--92096265 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
92096214 GTCCCTATAC
92096224 TTTTCAAAATTTGAA
1 TTTTCAAAATTTGAA
92096239 TTTTCAAAATTTGAA
1 TTTTCAAAATTTGAA
* *
92096254 ATTTCAATATTT
1 TTTTCAAAATTT
92096266 ACGTAAATGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.38, C:0.07, G:0.05, T:0.50
Consensus pattern (15 bp):
TTTTCAAAATTTGAA
Found at i:92098140 original size:27 final size:27
Alignment explanation
Indices: 92098102--92098155 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
92098092 TCATGAGAAG
92098102 TTATTTTTTTTATTGTATTCATTGGTA
1 TTATTTTTTTTATTGTATTCATTGGTA
92098129 TTATTTTTTTTATTGTATTCATTGGTA
1 TTATTTTTTTTATTGTATTCATTGGTA
92098156 CTCGAATAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.19, C:0.04, G:0.11, T:0.67
Consensus pattern (27 bp):
TTATTTTTTTTATTGTATTCATTGGTA
Found at i:92100515 original size:20 final size:19
Alignment explanation
Indices: 92100488--92100543 Score: 66
Period size: 16 Copynumber: 3.1 Consensus size: 19
92100478 TATTTTGTGA
92100488 ATTTAATATTAAAGTGATT
1 ATTTAATATTAAAGTGATT
92100507 ATCTTAATATT--A-T-ATT
1 AT-TTAATATTAAAGTGATT
92100523 AATTTAATATTAAAGTGATT
1 -ATTTAATATTAAAGTGATT
92100543 A
1 A
92100544 AGTTTAATCA
Statistics
Matches: 31, Mismatches: 0, Indels: 12
0.72 0.00 0.28
Matches are distributed among these distances:
16 11 0.35
17 3 0.10
18 2 0.06
19 4 0.13
20 11 0.35
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (19 bp):
ATTTAATATTAAAGTGATT
Found at i:92103328 original size:21 final size:21
Alignment explanation
Indices: 92103302--92103343 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
92103292 GCTTAAAACT
92103302 TCTAACTCTAATAACGGGTAC
1 TCTAACTCTAATAACGGGTAC
92103323 TCTAACTCTAATAACGGGTAC
1 TCTAACTCTAATAACGGGTAC
92103344 CTATGGCGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (21 bp):
TCTAACTCTAATAACGGGTAC
Found at i:92106306 original size:26 final size:26
Alignment explanation
Indices: 92106255--92106306 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
92106245 CAAGAAATAC
* *
92106255 AAAATTTGAACCTAGACCGAGGGAAG
1 AAAATTCGAACCTAGACCCAGGGAAG
*
92106281 AAAATTCGAACCTAGACCCAGTGAAG
1 AAAATTCGAACCTAGACCCAGGGAAG
92106307 GTCGAGCAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.42, C:0.19, G:0.23, T:0.15
Consensus pattern (26 bp):
AAAATTCGAACCTAGACCCAGGGAAG
Found at i:92111780 original size:48 final size:46
Alignment explanation
Indices: 92111660--92111780 Score: 140
Period size: 46 Copynumber: 2.6 Consensus size: 46
92111650 TGATATGTGT
*
92111660 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGCCCACATTATGAGA
*
92111706 GAC-AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATAT-A-A
1 G-CTAGTGTAAGACATGTCTGGGACATGCATC-GCC-C-ACAT-TATGAGA
* *
92111754 GCTAGTGTAAAACCTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
92111781 GCGTCAACTT
Statistics
Matches: 65, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
46 29 0.45
47 4 0.06
48 25 0.38
49 4 0.06
50 3 0.05
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGCCCACATTATGAGA
Found at i:92111813 original size:44 final size:41
Alignment explanation
Indices: 92111756--92111869 Score: 133
Period size: 44 Copynumber: 2.7 Consensus size: 41
92111746 ATATATAAGC
* * * *
92111756 TAGTGTAAAACCTGTCTGGGACATGGCGTCAAC-TTGTTGTGTG
1 TAGTGTAAGACCTGTCTGGGACATGGCATCAACATTG--AT-AG
*
92111799 TTAGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATAG
1 -TAGTGTAAGACCTGTCTGGGACATGGCATCAACATTGATAG
92111841 -AGTGTAAGACCTGTCTGGGACATGGCATC
1 TAGTGTAAGACCTGTCTGGGACATGGCATC
92111870 GGCCTTGATA
Statistics
Matches: 64, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
40 29 0.45
42 1 0.02
43 1 0.02
44 30 0.47
45 3 0.05
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.29
Consensus pattern (41 bp):
TAGTGTAAGACCTGTCTGGGACATGGCATCAACATTGATAG
Found at i:92111856 original size:40 final size:40
Alignment explanation
Indices: 92111801--92111879 Score: 140
Period size: 40 Copynumber: 2.0 Consensus size: 40
92111791 GTTGTGTGTT
92111801 AGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATAG
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATAG
* *
92111841 AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTTGATA
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATA
92111880 TATGAAAGTC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (40 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATAG
Found at i:92111913 original size:49 final size:47
Alignment explanation
Indices: 92111841--92111969 Score: 150
Period size: 49 Copynumber: 2.7 Consensus size: 47
92111831 ACATTGATAG
* * *
92111841 AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTTGATATATGAAAGTC
1 AGTGTAAGACCTGTCTAGGACATGGCATCGACCTTG--ATATGAAAGCC
* **
92111890 AGTGTAAGACCTGTCTAGGACATGGCATCGACTTTGATATGCTAGCC
1 AGTGTAAGACCTGTCTAGGACATGGCATCGACCTTGATATGAAAGCC
* * *
92111937 AATGTAAGACCATGTCGAGGACATGGCGTCGAC
1 AGTGTAAGACC-TGTCTAGGACATGGCATCGAC
92111970 ATCTTATCCC
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
47 18 0.26
48 19 0.27
49 33 0.47
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCTGTCTAGGACATGGCATCGACCTTGATATGAAAGCC
Found at i:92118615 original size:31 final size:29
Alignment explanation
Indices: 92118579--92118636 Score: 71
Period size: 31 Copynumber: 1.9 Consensus size: 29
92118569 AATAGTATTT
*
92118579 TATTAATTTAATATTAAAGTGATTATCTTAA
1 TATTAAATTAA-ATTAAA-TGATTATCTTAA
* *
92118610 TATTAAATTAAATTTAATGTTTATCTT
1 TATTAAATTAAATTAAATGATTATCTT
92118637 GTAGATAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 9 0.38
30 5 0.21
31 10 0.42
ACGTcount: A:0.40, C:0.03, G:0.05, T:0.52
Consensus pattern (29 bp):
TATTAAATTAAATTAAATGATTATCTTAA
Found at i:92118707 original size:26 final size:27
Alignment explanation
Indices: 92118644--92118708 Score: 75
Period size: 26 Copynumber: 2.5 Consensus size: 27
92118634 CTTGTAGATA
*
92118644 AATATT-ATATTAATTTAATAAGATTT
1 AATATTAATATTAATATAATAAGATTT
*
92118670 AATATTAA-ATTAATATAAT-ATATATT
1 AATATTAATATTAATATAATAAGAT-TT
92118696 AAT-TTAATATTAA
1 AATATTAATATTAA
92118709 AATGATTAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
25 7 0.21
26 26 0.76
27 1 0.03
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.48
Consensus pattern (27 bp):
AATATTAATATTAATATAATAAGATTT
Found at i:92119514 original size:14 final size:13
Alignment explanation
Indices: 92119475--92119517 Score: 68
Period size: 13 Copynumber: 3.3 Consensus size: 13
92119465 TCAAATAGAG
92119475 AATTTGATTAAAA
1 AATTTGATTAAAA
92119488 AATTTGATTAAAA
1 AATTTGATTAAAA
**
92119501 AATTTTCTTAAAA
1 AATTTGATTAAAA
92119514 AATT
1 AATT
92119518 AATTTTGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.51, C:0.02, G:0.05, T:0.42
Consensus pattern (13 bp):
AATTTGATTAAAA
Found at i:92120187 original size:58 final size:61
Alignment explanation
Indices: 92120076--92120191 Score: 168
Period size: 58 Copynumber: 2.0 Consensus size: 61
92120066 AGTGATTATC
*
92120076 TTAATATTAAATTAAATTAATTATTTATCTTGTAGATAAATATTCTATTAATTTAATACAT
1 TTAATATTAAATTAAATTAATTATTTATCTTGTAGATAAATATTATATTAATTTAATACAT
* *
92120137 TTAATATTTAATTTAATTTAA-TATTTATC-T-T-GATAAATATTATATTAATTTAATA
1 TTAATA-TTAAATTAAATTAATTATTTATCTTGTAGATAAATATTATATTAATTTAATA
92120192 TTAAAGTAAT
Statistics
Matches: 51, Mismatches: 3, Indels: 5
0.86 0.05 0.08
Matches are distributed among these distances:
58 23 0.45
59 1 0.02
60 1 0.02
61 14 0.27
62 12 0.24
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (61 bp):
TTAATATTAAATTAAATTAATTATTTATCTTGTAGATAAATATTATATTAATTTAATACAT
Found at i:92120210 original size:58 final size:61
Alignment explanation
Indices: 92120081--92120211 Score: 155
Period size: 58 Copynumber: 2.2 Consensus size: 61
92120071 TTATCTTAAT
* * * *
92120081 ATTAAATTAAATTAATTATTTATCTTGTAGATAAATATTCTATTAATTTAATACATTTAATA
1 ATTAATTTAATTTAATTATTTATCTTGTAGATAAATATTATATTAATTTAATA-ATTAAATA
*
92120143 TTTAATTTAATTTAA-TATTTATC-T-T-GATAAATATTATATTAATTTAAT-ATTAAAGTA
1 ATTAATTTAATTTAATTATTTATCTTGTAGATAAATATTATATTAATTTAATAATTAAA-TA
92120200 ATTAAGTTTAAT
1 ATTAA-TTTAAT
92120212 CATAGTTGAA
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
56 5 0.08
57 6 0.10
58 28 0.46
59 1 0.02
60 1 0.02
61 8 0.13
62 12 0.20
ACGTcount: A:0.43, C:0.03, G:0.04, T:0.50
Consensus pattern (61 bp):
ATTAATTTAATTTAATTATTTATCTTGTAGATAAATATTATATTAATTTAATAATTAAATA
Found at i:92122276 original size:22 final size:22
Alignment explanation
Indices: 92122248--92122304 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 22
92122238 AAAAAAAAAG
*
92122248 AAAATAGCAACAAAACATGAAA
1 AAAATAGCAACAAAAAATGAAA
* *
92122270 AAAATAGCAAGAAAAAAATTAAA
1 AAAATAGCAA-CAAAAAATGAAA
*
92122293 AAAATAACAACA
1 AAAATAGCAACA
92122305 TTTTTTTTTG
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
22 11 0.38
23 18 0.62
ACGTcount: A:0.72, C:0.11, G:0.07, T:0.11
Consensus pattern (22 bp):
AAAATAGCAACAAAAAATGAAA
Found at i:92129592 original size:50 final size:50
Alignment explanation
Indices: 92129517--92129793 Score: 419
Period size: 50 Copynumber: 5.5 Consensus size: 50
92129507 CCATGGCAAC
* *
92129517 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
92129567 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
92129617 AAGTGATAAGTGATAGCTTCGGCTACACTTATTTGATCAAGGATAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
*
92129667 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
** * * *
92129717 AAGTGATAAGTGATAGCTTCAACTACACTTATTTGATCAAGGAGAAATGGC
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAAT-GA
* * *
92129768 AAGTAAAAAGTGGTAGCTTCGGCTAC
1 AAGTGATAAGTGATAGCTTCGGCTAC
92129794 CTGATCAATG
Statistics
Matches: 206, Mismatches: 20, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
50 184 0.89
51 22 0.11
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:92129811 original size:31 final size:31
Alignment explanation
Indices: 92129773--92129831 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
92129763 ATGGCAAGTA
92129773 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
*
92129804 AAAAGTGGTAGTTTCGGCTACCTGATCA
1 AAAAGTGGTAGCTTCGGCTACCTGATCA
92129832 TCGGCTACTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (31 bp):
AAAAGTGGTAGCTTCGGCTACCTGATCAATG
Found at i:92129838 original size:46 final size:46
Alignment explanation
Indices: 92129786--92129877 Score: 130
Period size: 46 Copynumber: 2.0 Consensus size: 46
92129776 AGTGGTAGCT
* * *
92129786 TCGGCTACCTGATCAATGAAAAGTGGTAGTTTCGGCTACCTGATCA
1 TCGGCTACCTGATCAATGAAAAATGGTAGCTCCGGCTACCTGATCA
* * *
92129832 TCGGCTACTTGATTAGTGAAAAATGGTAGCTCCGGCTACCTGATCA
1 TCGGCTACCTGATCAATGAAAAATGGTAGCTCCGGCTACCTGATCA
92129878 GTGAATAGTG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (46 bp):
TCGGCTACCTGATCAATGAAAAATGGTAGCTCCGGCTACCTGATCA
Found at i:92129881 original size:31 final size:31
Alignment explanation
Indices: 92129833--92129901 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
92129823 ACCTGATCAT
* * *
92129833 CGGCTACTTGATTAGTGAAAAATGGTAGCTC
1 CGGCTACCTGATCAGTGAAAAATGATAGCTC
* * *
92129864 CGGCTACCTGATCAGTGAATAGTGATAGCTT
1 CGGCTACCTGATCAGTGAAAAATGATAGCTC
92129895 CGGCTAC
1 CGGCTAC
92129902 AAGTGACAAG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (31 bp):
CGGCTACCTGATCAGTGAAAAATGATAGCTC
Found at i:92149092 original size:20 final size:20
Alignment explanation
Indices: 92149069--92149135 Score: 75
Period size: 20 Copynumber: 3.4 Consensus size: 20
92149059 AAGCACAAAT
*
92149069 GTGCAATTAGAGGCACTGAA
1 GTGCAATAAGAGGCACTGAA
* *
92149089 GTGCAAAAAGAGGCAC-AAA
1 GTGCAATAAGAGGCACTGAA
92149108 TGTGCAATAAGAGGCA-TCGAA
1 -GTGCAATAAGAGGCACT-GAA
92149129 GTGCAAT
1 GTGCAAT
92149136 TCCGTATAAG
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
19 2 0.05
20 35 0.90
21 2 0.05
ACGTcount: A:0.40, C:0.15, G:0.28, T:0.16
Consensus pattern (20 bp):
GTGCAATAAGAGGCACTGAA
Found at i:92151100 original size:13 final size:13
Alignment explanation
Indices: 92151084--92151108 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
92151074 TTCTTTATTT
92151084 TATTTTTATTTTC
1 TATTTTTATTTTC
92151097 TATTTTTATTTT
1 TATTTTTATTTT
92151109 TTTAATTAGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.00, T:0.80
Consensus pattern (13 bp):
TATTTTTATTTTC
Found at i:92151102 original size:7 final size:6
Alignment explanation
Indices: 92151077--92151109 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
92151067 TTACGATTTC
92151077 TTTA-T TTTATT TTTATT TTCTATT TTTATT TTT
1 TTTATT TTTATT TTTATT TT-TATT TTTATT TTT
92151110 TTAATTAGGT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 4 0.15
6 16 0.62
7 6 0.23
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTATT
Found at i:92156206 original size:19 final size:19
Alignment explanation
Indices: 92156169--92156206 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
92156159 CCTTGGTTCA
92156169 TCAAAAAGGAGTTATTAGGC
1 TCAAAAAGGAG-TATTAGGC
92156189 TCAAATAAGGAG-ATTAGG
1 TCAAA-AAGGAGTATTAGG
92156207 TATTCATAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 6 0.35
20 5 0.29
21 6 0.35
ACGTcount: A:0.42, C:0.08, G:0.26, T:0.24
Consensus pattern (19 bp):
TCAAAAAGGAGTATTAGGC
Found at i:92157347 original size:12 final size:12
Alignment explanation
Indices: 92157326--92157355 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
92157316 AATTTGGATG
*
92157326 TTATTGTTATTA
1 TTATTTTTATTA
92157338 TTATTTTTATTA
1 TTATTTTTATTA
92157350 TTATTT
1 TTATTT
92157356 CGTAGGTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.73
Consensus pattern (12 bp):
TTATTTTTATTA
Found at i:92158361 original size:18 final size:17
Alignment explanation
Indices: 92158338--92158392 Score: 58
Period size: 18 Copynumber: 3.2 Consensus size: 17
92158328 ACAATTCTTT
92158338 TCTCTTCTTCTTTTTTCC
1 TCTCTTCTTCTTTTTT-C
* *
92158356 TCTCTTCATCTATTTTC
1 TCTCTTCTTCTTTTTTC
*
92158373 TCTTCTACTTC-TTTTTC
1 TC-TCTTCTTCTTTTTTC
92158390 TCT
1 TCT
92158393 ATAGCCGAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
16 1 0.03
17 10 0.32
18 20 0.65
ACGTcount: A:0.05, C:0.31, G:0.00, T:0.64
Consensus pattern (17 bp):
TCTCTTCTTCTTTTTTC
Found at i:92159661 original size:28 final size:28
Alignment explanation
Indices: 92159618--92159733 Score: 164
Period size: 28 Copynumber: 4.2 Consensus size: 28
92159608 AGAGGAAGCG
92159618 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
*
92159646 TTTTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* *
92159674 TTCTGGTGGCCCTGCCACAATTATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
* * *
92159702 ATCTGGTGACTCTGTCAC-AATATCTG-
1 TTCTGGTGGCTCTGCCACAAATATCTGT
92159728 TTCTGG
1 TTCTGG
92159734 CAGCCATGCT
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
26 5 0.06
27 7 0.09
28 66 0.85
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:92161957 original size:48 final size:48
Alignment explanation
Indices: 92161886--92161982 Score: 185
Period size: 48 Copynumber: 2.0 Consensus size: 48
92161876 GTCCAGCCGA
*
92161886 AATTCCTAAGCCACTATAGGTAGGGTTTCCAAGCTTTTCAAGCTCATT
1 AATTCCTAAGCCACCATAGGTAGGGTTTCCAAGCTTTTCAAGCTCATT
92161934 AATTCCTAAGCCACCATAGGTAGGGTTTCCAAGCTTTTCAAGCTCATT
1 AATTCCTAAGCCACCATAGGTAGGGTTTCCAAGCTTTTCAAGCTCATT
92161982 A
1 A
92161983 GTAAGTGCTC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (48 bp):
AATTCCTAAGCCACCATAGGTAGGGTTTCCAAGCTTTTCAAGCTCATT
Found at i:92180413 original size:46 final size:46
Alignment explanation
Indices: 92180255--92180444 Score: 218
Period size: 46 Copynumber: 4.0 Consensus size: 46
92180245 AAAGGGTAAG
* * * *
92180255 ATGCCGATGCCATGTCCCAGACATGATCTTACATTGGCTCTTATATATCA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTC--ATATA--A
* *
92180305 GTGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCCTACATATAA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAG-CT-CATATAA
* *
92180353 AGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATAA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCATATAA
** * *
92180399 ATGATGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATAA
1 ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCATATAA
92180445 CCCTAGTATC
Statistics
Matches: 122, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
46 47 0.39
47 2 0.02
48 34 0.28
50 36 0.30
51 2 0.02
52 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (46 bp):
ATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCATATAA
Found at i:92180443 original size:94 final size:96
Alignment explanation
Indices: 92180257--92180436 Score: 274
Period size: 94 Copynumber: 1.9 Consensus size: 96
92180247 AGGGTAAGAT
* * * *
92180257 GCCGATGCCATGTCCCAGACATGATCTTACATTGGCTCTTATATATCAGTGCCGATGCCATGTTC
1 GCCGATGCCATGTCCCAGACATGATCTTACACTAGCTC-TATATA-CAATGACGATGCCATGTTC
92180322 CAAACATGGTCTTACACTAGCCTACATATAAAG
64 CAAACATGGTCTTACACTAGCCTACATATAAAG
* *
92180355 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-ATATA-AATGATGATGCCATGTTCCA
1 GCCGATGCCATGTCCCAGACATGATCTTACACTAGCTCTATATACAATGACGATGCCATGTTCCA
92180418 AACATGGTCTTACACTAGC
66 AACATGGTCTTACACTAGC
92180437 TCACATAACC
Statistics
Matches: 76, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
94 36 0.47
96 5 0.07
98 35 0.46
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.28
Consensus pattern (96 bp):
GCCGATGCCATGTCCCAGACATGATCTTACACTAGCTCTATATACAATGACGATGCCATGTTCCA
AACATGGTCTTACACTAGCCTACATATAAAG
Found at i:92181467 original size:13 final size:13
Alignment explanation
Indices: 92181433--92181478 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
92181423 AAATGAGTAT
*
92181433 TTTTCT-TTGTTTT
1 TTTTCTATT-TTTA
92181446 TTTTCTATTTTTGA
1 TTTTCTATTTTT-A
92181460 TTTT-TATTTTTA
1 TTTTCTATTTTTA
92181472 TTTTCTA
1 TTTTCTA
92181479 CTCACTTTGC
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
12 5 0.17
13 18 0.62
14 6 0.21
ACGTcount: A:0.11, C:0.07, G:0.04, T:0.78
Consensus pattern (13 bp):
TTTTCTATTTTTA
Found at i:92182437 original size:20 final size:20
Alignment explanation
Indices: 92182409--92182460 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 20
92182399 CTAAATAAGA
92182409 CAAAATAAAAATATATCA-TC
1 CAAAATAAAAATATA-CAGTC
* *
92182429 CAAACTAAAATTATACAGTC
1 CAAAATAAAAATATACAGTC
92182449 CAAAAATAAAAA
1 C-AAAATAAAAA
92182461 AAACTAAAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 2 0.08
20 16 0.62
21 8 0.31
ACGTcount: A:0.62, C:0.15, G:0.02, T:0.21
Consensus pattern (20 bp):
CAAAATAAAAATATACAGTC
Found at i:92184225 original size:34 final size:34
Alignment explanation
Indices: 92184182--92184247 Score: 123
Period size: 34 Copynumber: 1.9 Consensus size: 34
92184172 TGTAGGCCTT
*
92184182 ACATTAGTATCACGACATGAGGTAAGGATGTCTC
1 ACATTAGTATCACGACACGAGGTAAGGATGTCTC
92184216 ACATTAGTATCACGACACGAGGTAAGGATGTC
1 ACATTAGTATCACGACACGAGGTAAGGATGTC
92184248 ATGACATTGG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.24
Consensus pattern (34 bp):
ACATTAGTATCACGACACGAGGTAAGGATGTCTC
Found at i:92187693 original size:23 final size:23
Alignment explanation
Indices: 92187656--92187699 Score: 63
Period size: 22 Copynumber: 1.9 Consensus size: 23
92187646 ATTTATAATT
92187656 TTCTTTGTAATTTA-GTTTTCAG
1 TTCTTTGTAATTTAGGTTTTCAG
*
92187678 TTCTTTTTAGATTTAGGTTTTC
1 TTCTTTGTA-ATTTAGGTTTTC
92187700 TTTTTAGTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 8 0.42
23 5 0.26
24 6 0.32
ACGTcount: A:0.16, C:0.09, G:0.14, T:0.61
Consensus pattern (23 bp):
TTCTTTGTAATTTAGGTTTTCAG
Found at i:92195004 original size:56 final size:57
Alignment explanation
Indices: 92194930--92195041 Score: 181
Period size: 56 Copynumber: 2.0 Consensus size: 57
92194920 CTCTACACTA
*
92194930 CCATAACAACTTTCAGCTATGGTCCTACTCGTTTTACTGTCAAATCATCTCTTGTTT
1 CCATAACAACTTTCAGCTATGGTCCTACTCGTTTTACTGTCAAATCATATCTTGTTT
* * *
92194987 CCAT-ACATCTTTTAGCTATGGTCTTACTCGTTTTACTGTCAAATCATATCTTGTT
1 CCATAACAACTTTCAGCTATGGTCCTACTCGTTTTACTGTCAAATCATATCTTGTT
92195042 GTCACAGCAT
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
56 47 0.92
57 4 0.08
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.43
Consensus pattern (57 bp):
CCATAACAACTTTCAGCTATGGTCCTACTCGTTTTACTGTCAAATCATATCTTGTTT
Done.