Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 276 of 349
Found at i:92195273 original size:45 final size:45
Alignment explanation
Indices: 92195223--92195349 Score: 141
Period size: 44 Copynumber: 2.9 Consensus size: 45
92195213 GTCCTATTTA
* * *
92195223 CCATGATGCCACAACGTCTTTCAGCCATGGTCTTACTCATTTTTG
1 CCATGATGCCATAACATCTTTCAGCCATGGTCTTACTCATTGTTG
* * * *
92195268 TCATGATGTCATAACATCTTTTAGCTAT-GTCTTACTCATTGTTG
1 CCATGATGCCATAACATCTTTCAGCCATGGTCTTACTCATTGTTG
* * * *
92195312 CCCTTATGCCATAACAACTTTCA-ACATGGTCTTACTCA
1 CCATGATGCCATAACATCTTTCAGCCATGGTCTTACTCA
92195350 GTTTAGGCAT
Statistics
Matches: 66, Mismatches: 15, Indels: 3
0.79 0.18 0.04
Matches are distributed among these distances:
43 2 0.03
44 42 0.64
45 22 0.33
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.38
Consensus pattern (45 bp):
CCATGATGCCATAACATCTTTCAGCCATGGTCTTACTCATTGTTG
Found at i:92197323 original size:12 final size:12
Alignment explanation
Indices: 92197306--92197333 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
92197296 GCTTATAAGA
92197306 CAAATTTTATGT
1 CAAATTTTATGT
92197318 CAAATTTTATGT
1 CAAATTTTATGT
92197330 CAAA
1 CAAA
92197334 ATAAACCACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.39, C:0.11, G:0.07, T:0.43
Consensus pattern (12 bp):
CAAATTTTATGT
Found at i:92198693 original size:45 final size:45
Alignment explanation
Indices: 92198634--92198808 Score: 188
Period size: 45 Copynumber: 3.9 Consensus size: 45
92198624 CGATGTCGAT
* *
92198634 GTCCCAGACATGGTCTTACACGTAACCACATATATAGAAGCCAAC
1 GTCCCAGACATGGTCTTACACGAAAACACATATATAGAAGCCAAC
** * * * *
92198679 GTCCCAGATGTGGTCTTACTCGAAAACGCATATATCGATGCCAAC
1 GTCCCAGACATGGTCTTACACGAAAACACATATATAGAAGCCAAC
* * * * * * * *
92198724 GTCCTAGACGTGGTCTTACTCAAAAACAAATATATCGATGCCAAT
1 GTCCCAGACATGGTCTTACACGAAAACACATATATAGAAGCCAAC
*
92198769 GTCCCAGACATGGTCTTACAAGAAAACACATATATCAGAA
1 GTCCCAGACATGGTCTTACACGAAAACACATATAT-AGAA
92198809 TCCTACGGTT
Statistics
Matches: 107, Mismatches: 22, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
45 105 0.98
46 2 0.02
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (45 bp):
GTCCCAGACATGGTCTTACACGAAAACACATATATAGAAGCCAAC
Found at i:92218939 original size:31 final size:31
Alignment explanation
Indices: 92218901--92218961 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
92218891 TTTCACATTT
92218901 CATATTTCATAACACTAGGCCGAAGCCTTTC
1 CATATTTCATAACACTAGGCCGAAGCCTTTC
** *
92218932 CATATTTCATATTACTGGGCCGAAGCCTTT
1 CATATTTCATAACACTAGGCCGAAGCCTTT
92218962 ATTGTAAACG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.33
Consensus pattern (31 bp):
CATATTTCATAACACTAGGCCGAAGCCTTTC
Found at i:92219274 original size:24 final size:24
Alignment explanation
Indices: 92219155--92219274 Score: 163
Period size: 24 Copynumber: 5.0 Consensus size: 24
92219145 GCTTTTTCAT
* *
92219155 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* *
92219180 ACAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTG
*
92219203 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
92219227 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
92219251 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
92219275 CACTTCCTCC
Statistics
Matches: 87, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 16 0.18
24 64 0.74
25 7 0.08
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:92219348 original size:20 final size:20
Alignment explanation
Indices: 92219323--92219389 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
92219313 TCATAAATAC
*
92219323 ATCATGTGCATGTCATACAT
1 ATCATGTGCATATCATACAT
92219343 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
92219363 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
92219383 ACCATGT
1 ATCATGT
92219390 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:92219454 original size:25 final size:25
Alignment explanation
Indices: 92219426--92219473 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
92219416 ATGTATAAAC
* *
92219426 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGAAAAATGGTCATTTTTA
92219451 CCTAGGGGAAAAATGGTCATTTT
1 CCTAGGGGAAAAATGGTCATTTT
92219474 CATATTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.27, C:0.12, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGAAAAATGGTCATTTTTA
Found at i:92223682 original size:27 final size:28
Alignment explanation
Indices: 92223649--92223703 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 28
92223639 TACTCCCTTT
* *
92223649 TAGTTTT-ATGGCTTAACTAGAACCCTC
1 TAGTTTTAAAGGCTTAACTAAAACCCTC
92223676 TAGTTTTACAAGGCTTAACTAAAACCCT
1 TAGTTTTA-AAGGCTTAACTAAAACCCT
92223704 TTGCAAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 7 0.29
29 17 0.71
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.35
Consensus pattern (28 bp):
TAGTTTTAAAGGCTTAACTAAAACCCTC
Found at i:92226136 original size:13 final size:13
Alignment explanation
Indices: 92226118--92226147 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
92226108 GAAATAACAG
*
92226118 GAATTAACTACTT
1 GAATTAACTACTC
92226131 GAATTAACTACTC
1 GAATTAACTACTC
92226144 GAAT
1 GAAT
92226148 CCAAACTAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (13 bp):
GAATTAACTACTC
Found at i:92226610 original size:12 final size:12
Alignment explanation
Indices: 92226593--92226623 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
92226583 CCCACACACT
92226593 CATGTGTCAGGC
1 CATGTGTCAGGC
92226605 CATGTGTCAGGC
1 CATGTGTCAGGC
*
92226617 CAGGTGT
1 CATGTGT
92226624 TAGGTCGTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.16, C:0.23, G:0.35, T:0.26
Consensus pattern (12 bp):
CATGTGTCAGGC
Found at i:92230181 original size:30 final size:29
Alignment explanation
Indices: 92230147--92230209 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 29
92230137 ATGAATTGGA
92230147 AGCTTTGGCACTAAATGTGCGATTTAAACT
1 AGCTTTGGCACTAAATGTGCGATTT-AACT
*
92230177 AGCTTTGGCACTAAGTGTGCGATTTAACT
1 AGCTTTGGCACTAAATGTGCGATTTAACT
92230206 AGCT
1 AGCT
92230210 CCGGCTACTT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 8 0.25
30 24 0.75
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.33
Consensus pattern (29 bp):
AGCTTTGGCACTAAATGTGCGATTTAACT
Found at i:92234354 original size:14 final size:14
Alignment explanation
Indices: 92234335--92234367 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
92234325 TAGAATTCAT
92234335 AACTAGCTTGGCAA
1 AACTAGCTTGGCAA
92234349 AACTAGCTTGGCAA
1 AACTAGCTTGGCAA
92234363 AACTA
1 AACTA
92234368 AGCGATTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.21
Consensus pattern (14 bp):
AACTAGCTTGGCAA
Found at i:92236071 original size:27 final size:27
Alignment explanation
Indices: 92236041--92236315 Score: 245
Period size: 27 Copynumber: 10.2 Consensus size: 27
92236031 ATTATTGTTT
*
92236041 TACCCTCGATTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
*
92236068 TACCCTCGATTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
92236095 TACCCTCGA-TCAGTAAAATTACGAAAA
1 TACCCTCGATTTA-TAAAATTACCAAAA
* * * *
92236122 TACCCTAG-TCTGTAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * * *
92236148 TACCCTTGGTTTGTAAAATTACCGAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
92236175 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
92236202 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAA
* * * *
92236229 TACCACT-GGTTTGTGAAATTACCGAAA
1 TACC-CTCGATTTATAAAATTACCAAAA
* **
92236256 TGCCCTTAATTTATAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * *
92236283 TACCCTTGATTTACAAAGTTA-CAGAAA
1 TACCCTCGATTTATAAAATTACCA-AAA
92236310 TACCCT
1 TACCCT
92236316 TAACTTTCTA
Statistics
Matches: 209, Mismatches: 31, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
26 28 0.13
27 180 0.86
28 1 0.00
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCAAAA
Found at i:92236248 original size:81 final size:80
Alignment explanation
Indices: 92236055--92236287 Score: 306
Period size: 81 Copynumber: 2.9 Consensus size: 80
92236045 CTCGATTTAC
* ** * * ** *
92236055 AAAATTACCAAAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACGAA
1 AAAATTACCAAAATACCCT-GGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
92236120 AATA-CCCTAGTCTGT
65 AATACCCCTAGTCTGT
*
92236135 AAAATTACTAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTACCAAAATACCC-TGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
*
92236200 AATACCCCTAGTTTGT
65 AATACCCCTAGTCTGT
* * * *
92236216 AAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATGCCCTTAATTTATAAAATTACCAA
1 AAAATTACCAAAATACC-CTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
92236281 AATACCC
65 AATACCC
92236288 TTGATTTACA
Statistics
Matches: 135, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
80 58 0.43
81 76 0.56
82 1 0.01
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.28
Consensus pattern (80 bp):
AAAATTACCAAAATACCCTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAA
ATACCCCTAGTCTGT
Found at i:92236310 original size:54 final size:53
Alignment explanation
Indices: 92236049--92236373 Score: 215
Period size: 54 Copynumber: 6.0 Consensus size: 53
92236039 TTTACCCTCG
* * **
92236049 ATTTACAAAATTACCAAAATACCCTCGATTTACAAAATTACCAAAATACCCTCG
1 ATTTATAAAATTACCAAAATACCCTTGATTTACAAAATTA-CAAAATACCCTTA
* * * * ** *
92236103 A-TCAGTAAAATTACGAAAATACCCTAG-TCTGTAAAATTACTAAAATACCCTTG
1 ATTTA-TAAAATTACCAAAATACCCTTGATTTACAAAATTAC-AAAATACCCTTA
* * * ** ** *
92236156 GTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTA
1 ATTTATAAAATTACCAAAATACCCTTGATTTACAAAATTA-CAAAATACCCTTA
* * * *** * *
92236210 GTTTGTAAAATTACCAAAATACCAC-TGGTTTGTGAAATTACCGAAATGCCCTTA
1 ATTTATAAAATTACCAAAATACC-CTTGATTTACAAAATTA-CAAAATACCCTTA
*
92236264 ATTTATAAAATTACCAAAATACCCTTGATTTACAAAGTTACAGAAATACCCTTA
1 ATTTATAAAATTACCAAAATACCCTTGATTTACAAAATTACA-AAATACCCTTA
* *** * * *
92236318 ACTTTCTAAAAATTATGGAAATACCATTGGTTTAACAAAATTACTGAAATACCCTT
1 A-TTTAT-AAAATTACCAAAATACCCTTGATTT-ACAAAATTAC-AAAATACCCTT
92236374 GGTTTGTAGA
Statistics
Matches: 216, Mismatches: 43, Indels: 21
0.77 0.15 0.08
Matches are distributed among these distances:
52 1 0.00
53 42 0.19
54 128 0.59
55 6 0.03
56 20 0.09
57 19 0.09
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (53 bp):
ATTTATAAAATTACCAAAATACCCTTGATTTACAAAATTACAAAATACCCTTA
Found at i:92236311 original size:81 final size:78
Alignment explanation
Indices: 92236055--92236316 Score: 278
Period size: 81 Copynumber: 3.2 Consensus size: 78
92236045 CTCGATTTAC
* * ** * * * *
92236055 AAAATTACCAAAATACCCTCGATTTACAAAATTACCAAAATACCCTCGA-TCAGTAAAATTACGA
1 AAAATTA-CAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTA-TAAAATTACCA
92236119 AAATACCCTAGTCTGT
64 AAATACCCTAGT-TGT
*
92236135 AAAATTACTAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTAC-AAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTATAAAATTACCAA
92236200 AATACCCCTAGTTTGT
65 AATA-CCCTAG-TTGT
* * *
92236216 AAAATTACCAAAATACCAC-TGGTTTGTGAAATTACCGAAATGCCCTTAATTTATAAAATTACCA
1 AAAATTA-CAAAATACC-CTTGGTTTGTAAAATTACCGAAATACCCTCAATTTATAAAATTACCA
*
92236280 AAATACCCTTGATT-T
64 AAATACCCTAG-TTGT
92236295 ACAAAGTTACAGAAATACCCTT
1 A-AAA-TTACA-AAATACCCTT
92236317 AACTTTCTAA
Statistics
Matches: 157, Mismatches: 15, Indels: 19
0.82 0.08 0.10
Matches are distributed among these distances:
79 3 0.02
80 69 0.44
81 82 0.52
82 3 0.02
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (78 bp):
AAAATTACAAAATACCCTTGGTTTGTAAAATTACCGAAATACCCTCAATTTATAAAATTACCAAA
ATACCCTAGTTGT
Found at i:92236316 original size:27 final size:27
Alignment explanation
Indices: 92236041--92236374 Score: 143
Period size: 27 Copynumber: 12.3 Consensus size: 27
92236031 ATTATTGTTT
*
92236041 TACCCTCGATTTACAAAATTACCA-AAA
1 TACCCTTGATTTACAAAATTA-CAGAAA
*
92236068 TACCCTCGATTTACAAAATTACCA-AAA
1 TACCCTTGATTTACAAAATTA-CAGAAA
* * *
92236095 TACCCTCGA-TCAGTAAAATTAC-GAAAA
1 TACCCTTGATTTA-CAAAATTACAG-AAA
* * **
92236122 TACCCTAG-TCTGTAAAATTACTA-AAA
1 TACCCTTGATTTACAAAATTAC-AGAAA
* ** *
92236148 TACCCTTGGTTTGTAAAATTACCGAAA
1 TACCCTTGATTTACAAAATTACAGAAA
** **
92236175 TACCCTCAATTTGTAAAATTACCA-AAA
1 TACCCTTGATTTACAAAATTA-CAGAAA
* **
92236202 TACCCCT-AGTTTGTAAAATTACCA-AAA
1 TACCCTTGA-TTTACAAAATTA-CAGAAA
* *** *
92236229 TACCAC-TGGTTTGTGAAATTACCGAAA
1 TACC-CTTGATTTACAAAATTACAGAAA
* * *
92236256 TGCCCTTAATTTATAAAATTACCA-AAA
1 TACCCTTGATTTACAAAATTA-CAGAAA
*
92236283 TACCCTTGATTTACAAAGTTACAGAAA
1 TACCCTTGATTTACAAAATTACAGAAA
* **
92236310 TACCCTTAACTTT-CTAAAAATTATGGAAA
1 TACCCTTGA-TTTAC--AAAATTACAGAAA
* * *
92236339 TACCATTGGTTTAACAAAATTACTGAAA
1 TACCCTTGATTT-ACAAAATTACAGAAA
92236367 TACCCTTG
1 TACCCTTG
92236375 GTTTGTAGAT
Statistics
Matches: 248, Mismatches: 38, Indels: 41
0.76 0.12 0.13
Matches are distributed among these distances:
26 27 0.11
27 177 0.71
28 27 0.11
29 16 0.06
30 1 0.00
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACAGAAA
Found at i:92236523 original size:27 final size:27
Alignment explanation
Indices: 92236432--92236523 Score: 116
Period size: 27 Copynumber: 3.4 Consensus size: 27
92236422 ACCCCTATTA
* *
92236432 GGTAAAAAGACCATAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
92236459 GGTAAAGA-GACCGTAAAGCCCCTGTAG
1 GGTAAA-ATGACCGTAAAGCCCCTGTAG
* *
92236486 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
92236513 GGTAAAATGAC
1 GGTAAAATGAC
92236524 GAATGTGCCC
Statistics
Matches: 58, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
27 56 0.97
28 2 0.03
ACGTcount: A:0.36, C:0.21, G:0.25, T:0.18
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:92237419 original size:25 final size:26
Alignment explanation
Indices: 92237322--92237457 Score: 190
Period size: 26 Copynumber: 5.3 Consensus size: 26
92237312 GAGGAAGTCC
* *
92237322 AAAAGGGCTTATGCCCTAGATTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
92237348 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
92237374 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
92237400 AAAAGGGCTT-TGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
92237425 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
92237448 AAAAGAGGCT
1 AAAAG-GGCT
92237458 AGGCCTCCAG
Statistics
Matches: 101, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
23 5 0.05
24 8 0.08
25 32 0.32
26 56 0.55
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:92238626 original size:38 final size:38
Alignment explanation
Indices: 92238575--92238865 Score: 204
Period size: 38 Copynumber: 6.9 Consensus size: 38
92238565 ATGAAAAAAT
*
92238575 GTGGTGCTAAGTGGATATACCACGGTTATACGTGTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTATACATGTAAC
*
92238613 GTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGTAAC
1 GTGGTGCTAAGTGGATATACCACG---------GTT-ATACATGTAAC
* *
92238661 GTGGTGCTAAGTGGATATGCCACGGTTACATATATTGAATCATTAAC
1 GTGGTGCTAAGTGGATATACCACGGTT--ATACA-TG------TAAC
* *
92238708 GTGGTGCTAAGTAGATATACCACGGTTAAACATGTAAC
1 GTGGTGCTAAGTGGATATACCACGGTTATACATGTAAC
* *
92238746 GTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAAC
1 GTGGTGCTAAGTGGATATACCACGGTT--ATACA-TG------TAAC
* * * *
92238793 GTAGTGCTAAGTGGATATACCACGATTAAACATGTAAT
1 GTGGTGCTAAGTGGATATACCACGGTTATACATGTAAC
* *
92238831 GTGGTGCTAAGTGGATATGCCATGGTTATACATGT
1 GTGGTGCTAAGTGGATATACCACGGTTATACATGT
92238866 TAATTTGAAA
Statistics
Matches: 201, Mismatches: 25, Indels: 54
0.72 0.09 0.19
Matches are distributed among these distances:
38 86 0.43
39 2 0.01
40 7 0.03
41 4 0.02
44 4 0.02
45 6 0.03
47 59 0.29
48 33 0.16
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (38 bp):
GTGGTGCTAAGTGGATATACCACGGTTATACATGTAAC
Found at i:92238731 original size:47 final size:46
Alignment explanation
Indices: 92238609--92238816 Score: 261
Period size: 47 Copynumber: 4.6 Consensus size: 46
92238599 GTTATACGTG
* *
92238609 TAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGAT-CAT
*
92238656 GTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGAATCAT
1 -TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTG-ATCAT
* *
92238704 TAACGTGGTGCTAAGTAGATATACCACGGTTA-A-ACA-TG-----
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATCAT
*
92238742 TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGA-TCAT
*
92238789 TAACGTAGTGCTAAGTGGATATACCACG
1 TAACGTGGTGCTAAGTGGATATACCACG
92238817 ATTAAACATG
Statistics
Matches: 139, Mismatches: 11, Indels: 21
0.81 0.06 0.12
Matches are distributed among these distances:
38 30 0.22
39 1 0.01
40 2 0.01
41 2 0.01
44 2 0.01
45 2 0.01
46 1 0.01
47 56 0.40
48 41 0.29
49 2 0.01
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (46 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATCAT
Found at i:92238763 original size:85 final size:85
Alignment explanation
Indices: 92238652--92238858 Score: 360
Period size: 85 Copynumber: 2.4 Consensus size: 85
92238642 ACATATTGAT
*
92238652 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGAATCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGAATCATTAACGTAGTGCTA
*
92238717 AGTAGATATACCACGGTTAA
66 AGTAGATATACCACGATTAA
*
92238737 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTAGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGAATCATTAACGTAGTGCTA
*
92238802 AGTGGATATACCACGATTAA
66 AGTAGATATACCACGATTAA
* *
92238822 ACATGTAATGTGGTGCTAAGTGGATATGCCATGGTTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
92238859 TACATGTTAA
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 116 1.00
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.30
Consensus pattern (85 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGAATCATTAACGTAGTGCTA
AGTAGATATACCACGATTAA
Found at i:92240156 original size:6 final size:6
Alignment explanation
Indices: 92240142--92240172 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
92240132 TTTAATCATA
92240142 TTTACAT TTTAAT TTTAAT TTTAAT TTTAAT
1 TTTA-AT TTTAAT TTTAAT TTTAAT TTTAAT
92240173 ATAATCACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 20 0.83
7 4 0.17
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (6 bp):
TTTAAT
Found at i:92242673 original size:15 final size:15
Alignment explanation
Indices: 92242653--92242694 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
92242643 GCTGTAAATG
92242653 GGATTTCCTTATCAT
1 GGATTTCCTTATCAT
* *
92242668 GGATTTCTTTATCTT
1 GGATTTCCTTATCAT
*
92242683 AGATTTCCTTAT
1 GGATTTCCTTAT
92242695 TCTGGGCTTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.19, C:0.17, G:0.12, T:0.52
Consensus pattern (15 bp):
GGATTTCCTTATCAT
Found at i:92245464 original size:38 final size:38
Alignment explanation
Indices: 92245409--92245702 Score: 210
Period size: 38 Copynumber: 7.0 Consensus size: 38
92245399 GAAATGAAAA
*
92245409 AACGTGGTGCTAAGTGGATATACCACGGTTATACGTGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
* *
92245447 AACATGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGT
1 AACGTGGTGCTAAGTGGATATACCACG---------GTT-ATACATGT
* *
92245495 AACGTGGTGCTAAGTGGATATGCCACGGTTATATATATTGAATCATT
1 AACGTGGTGCTAAGTGGATATACCACGG-T-TATACA-TG------T
* *
92245542 AACGTGGTGCTAAGTAGATATACCACGGTTAAACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
* *
92245580 AACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATT
1 AACGTGGTGCTAAGTGGATATACCACGGTT--ATACA-TG------T
* * *
92245627 AACGTAGTGCTAAGTGGATATACCACGATTAAACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
* *
92245665 AACGTGGTGCTAAGTGGATATGCCATGGTTATACATGT
1 AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
92245703 TAATTTGAAA
Statistics
Matches: 203, Mismatches: 25, Indels: 56
0.71 0.09 0.20
Matches are distributed among these distances:
38 89 0.44
40 8 0.04
41 5 0.02
44 4 0.02
45 7 0.03
46 1 0.00
47 57 0.28
48 32 0.16
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (38 bp):
AACGTGGTGCTAAGTGGATATACCACGGTTATACATGT
Found at i:92245568 original size:47 final size:46
Alignment explanation
Indices: 92245446--92245653 Score: 243
Period size: 47 Copynumber: 4.6 Consensus size: 46
92245436 GTTATACGTG
* * *
92245446 TAACATGGTGCTAAGTGGATATACCACGATTACACATATTGATACAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGAT-CAT
* *
92245493 GTAACGTGGTGCTAAGTGGATATGCCACGGTTATATATATTGAATCAT
1 -TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTG-ATCAT
* *
92245541 TAACGTGGTGCTAAGTAGATATACCACGGTTA-A-ACA-TG-----
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATCAT
*
92245579 TAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
1 TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGA-TCAT
*
92245626 TAACGTAGTGCTAAGTGGATATACCACG
1 TAACGTGGTGCTAAGTGGATATACCACG
92245654 ATTAAACATG
Statistics
Matches: 137, Mismatches: 13, Indels: 21
0.80 0.08 0.12
Matches are distributed among these distances:
38 30 0.22
39 1 0.01
40 2 0.01
41 2 0.01
44 2 0.01
45 2 0.01
46 1 0.01
47 56 0.41
48 39 0.28
49 2 0.01
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (46 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTACATATATTGATCAT
Found at i:92245601 original size:85 final size:85
Alignment explanation
Indices: 92245489--92245697 Score: 364
Period size: 85 Copynumber: 2.5 Consensus size: 85
92245479 ACATATTGAT
*
92245489 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTATATATATTGAATCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTATATATATTGAATCATTAACGTAGTGCTA
*
92245554 AGTAGATATACCACGGTTAA
66 AGTAGATATACCACGATTAA
* *
92245574 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTAGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTATATATATTGAATCATTAACGTAGTGCTA
*
92245639 AGTGGATATACCACGATTAA
66 AGTAGATATACCACGATTAA
*
92245659 ACATGTAACGTGGTGCTAAGTGGATATGCCATGGTTATA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTATA
92245698 CATGTTAATT
Statistics
Matches: 117, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
85 117 1.00
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (85 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTATATATATTGAATCATTAACGTAGTGCTA
AGTAGATATACCACGATTAA
Found at i:92247757 original size:48 final size:48
Alignment explanation
Indices: 92247585--92247766 Score: 146
Period size: 48 Copynumber: 3.9 Consensus size: 48
92247575 TATCCTAGAT
* *
92247585 ATGGTCTTACATGGGACCACATAACGATGCCAATGCCATGTCCAAGAC
1 ATGGTCTTACATGGGATCACATAACGATGCCAATGCCATGTCCCAGAC
* * *
92247633 ATGGTCTTACATGGGATATCACATATC-AAGGC--TG--ATAG-CCCAG-C
1 ATGGTCTTACATGGG--ATCACATAACGATGCCAATGCCAT-GTCCCAGAC
* * * * * ** *
92247677 TATAGTCTTACACGATG-TCTCATTATAATGCCAATGCCATGTCCCGGAC
1 -ATGGTCTTACATG-GGATCACATAACGATGCCAATGCCATGTCCCAGAC
92247726 ATGGTCTTACATGGGATCACATAACGATGCCAATGCCATGT
1 ATGGTCTTACATGGGATCACATAACGATGCCAATGCCATGT
92247767 TCTTACATGG
Statistics
Matches: 99, Mismatches: 22, Indels: 26
0.67 0.15 0.18
Matches are distributed among these distances:
43 5 0.05
44 4 0.04
45 17 0.17
46 4 0.04
47 4 0.04
48 53 0.54
49 4 0.04
50 8 0.08
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (48 bp):
ATGGTCTTACATGGGATCACATAACGATGCCAATGCCATGTCCCAGAC
Found at i:92260080 original size:18 final size:18
Alignment explanation
Indices: 92260057--92260092 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
92260047 GGTGAGATCG
92260057 AGAATTGGAAATAAATCT
1 AGAATTGGAAATAAATCT
92260075 AGAATTGGAAATAAATCT
1 AGAATTGGAAATAAATCT
92260093 GGATATCACG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.06, G:0.17, T:0.28
Consensus pattern (18 bp):
AGAATTGGAAATAAATCT
Found at i:92291073 original size:12 final size:12
Alignment explanation
Indices: 92291056--92291080 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
92291046 GTTTGGCACA
92291056 GCCTAGCACACG
1 GCCTAGCACACG
92291068 GCCTAGCACACG
1 GCCTAGCACACG
92291080 G
1 G
92291081 GCATGTATGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.40, G:0.28, T:0.08
Consensus pattern (12 bp):
GCCTAGCACACG
Found at i:92291859 original size:54 final size:54
Alignment explanation
Indices: 92291791--92291897 Score: 135
Period size: 54 Copynumber: 2.0 Consensus size: 54
92291781 CCGTGTGGCC
* * * * *
92291791 CAAGTTAGAGAGTTACATGGG-TAGAGACACGGGCTGGGACACAGTCATGTGTCT
1 CAAGTCAGAGAGTTACACGGGCAAG-GACACGAGCTGGGACACAGCCATGTGTCT
* *
92291845 CAAGTCAGTGAGTTACACGGGCAAGGAGACGAGCTGGGACACAGCCATGTGTC
1 CAAGTCAGAGAGTTACACGGGCAAGGACACGAGCTGGGACACAGCCATGTGTC
92291898 CCCATTTTGA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
54 43 0.96
55 2 0.04
ACGTcount: A:0.28, C:0.20, G:0.34, T:0.19
Consensus pattern (54 bp):
CAAGTCAGAGAGTTACACGGGCAAGGACACGAGCTGGGACACAGCCATGTGTCT
Found at i:92292092 original size:21 final size:22
Alignment explanation
Indices: 92292052--92292092 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
92292042 CGTTTAGTTC
*
92292052 TAAAATCATTTTTAAGGACTTG
1 TAAAATCATATTTAAGGACTTG
*
92292074 TAAACTCATATTT-AGGACT
1 TAAAATCATATTTAAGGACT
92292093 GTATGCATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39
Consensus pattern (22 bp):
TAAAATCATATTTAAGGACTTG
Found at i:92297056 original size:7 final size:7
Alignment explanation
Indices: 92297044--92297072 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
92297034 TTGGGGGAAT
92297044 TTTGGAG
1 TTTGGAG
92297051 TTTGGAG
1 TTTGGAG
92297058 TTTGGAG
1 TTTGGAG
92297065 TTTGGAG
1 TTTGGAG
92297072 T
1 T
92297073 GATGTGGGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.41, T:0.45
Consensus pattern (7 bp):
TTTGGAG
Found at i:92297369 original size:11 final size:11
Alignment explanation
Indices: 92297341--92297407 Score: 68
Period size: 12 Copynumber: 6.2 Consensus size: 11
92297331 AAAATTAATT
*
92297341 TTTTTTTAATA
1 TTTTTTTATTA
92297352 TTATTTTTATTA
1 TT-TTTTTATTA
*
92297364 TTTTTTTCTGTA
1 TTTTTTTAT-TA
92297376 TTTTTTTATTA
1 TTTTTTTATTA
92297387 ---TTTTATTA
1 TTTTTTTATTA
*
92297395 TTTTGTTATTA
1 TTTTTTTATTA
92297406 TT
1 TT
92297408 GTTTAGATAT
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
8 8 0.17
11 19 0.40
12 20 0.43
ACGTcount: A:0.19, C:0.01, G:0.03, T:0.76
Consensus pattern (11 bp):
TTTTTTTATTA
Found at i:92297403 original size:8 final size:8
Alignment explanation
Indices: 92297350--92297404 Score: 51
Period size: 8 Copynumber: 6.9 Consensus size: 8
92297340 TTTTTTTTAA
92297350 TATTATTTT
1 TATTA-TTT
92297359 TATTATTT
1 TATTATTT
*
92297367 T-TT-TCTG
1 TATTAT-TT
*
92297374 TATTTTTT
1 TATTATTT
92297382 TATTATTT
1 TATTATTT
92297390 TATTATTT
1 TATTATTT
*
92297398 TGTTATT
1 TATTATT
92297405 ATTGTTTAGA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
6 1 0.03
7 4 0.10
8 28 0.72
9 6 0.15
ACGTcount: A:0.18, C:0.02, G:0.04, T:0.76
Consensus pattern (8 bp):
TATTATTT
Found at i:92299142 original size:31 final size:32
Alignment explanation
Indices: 92299089--92299148 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 32
92299079 ATTCGTTTCA
* *
92299089 CATCTATGTTCACATGGCAAGACTTTTCAGCT
1 CATCTATGTTCACATAGCAAGACTCTTCAGCT
92299121 CATCT-TGTTCACACTAG-AAGACTCTTCA
1 CATCTATGTTCACA-TAGCAAGACTCTTCA
92299149 ACATTCGGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
31 18 0.72
32 7 0.28
ACGTcount: A:0.27, C:0.27, G:0.13, T:0.33
Consensus pattern (32 bp):
CATCTATGTTCACATAGCAAGACTCTTCAGCT
Found at i:92300122 original size:19 final size:19
Alignment explanation
Indices: 92300098--92300143 Score: 76
Period size: 19 Copynumber: 2.4 Consensus size: 19
92300088 CGAAATTATT
92300098 TTAAAATAA-AGGAACGAAA
1 TTAAAA-AAGAGGAACGAAA
92300117 TTAAAAAAGAGGAACGAAA
1 TTAAAAAAGAGGAACGAAA
92300136 TTAAAAAA
1 TTAAAAAA
92300144 AAAACAAACA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
18 2 0.08
19 24 0.92
ACGTcount: A:0.65, C:0.04, G:0.15, T:0.15
Consensus pattern (19 bp):
TTAAAAAAGAGGAACGAAA
Found at i:92308566 original size:7 final size:7
Alignment explanation
Indices: 92308554--92308578 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
92308544 GAAGCCTCTT
92308554 CCCCTTC
1 CCCCTTC
92308561 CCCCTTC
1 CCCCTTC
92308568 CCCCTTC
1 CCCCTTC
92308575 CCCC
1 CCCC
92308579 ATCCTTGTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.76, G:0.00, T:0.24
Consensus pattern (7 bp):
CCCCTTC
Found at i:92317663 original size:31 final size:32
Alignment explanation
Indices: 92317625--92317713 Score: 126
Period size: 31 Copynumber: 2.8 Consensus size: 32
92317615 TTTCTTCTTG
* *
92317625 ACATTCCAGCTACTGTCCAACAACCAAACA-C
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACC
*
92317656 ACATTCCAGCTCCCGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACAC-C
*
92317689 ACATTCCAGCTCCTATCCAGCAACC
1 ACATTCCAGCTCCTGTCCAGCAACC
92317714 TGAAACAGAG
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
31 27 0.53
33 24 0.47
ACGTcount: A:0.33, C:0.43, G:0.08, T:0.17
Consensus pattern (32 bp):
ACATTCCAGCTCCTGTCCAGCAACCAAACACC
Found at i:92317863 original size:12 final size:12
Alignment explanation
Indices: 92317848--92317882 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
92317838 GAGGTAATTG
92317848 CTGAACCTACTA
1 CTGAACCTACTA
92317860 CTGAACCTACTA
1 CTGAACCTACTA
*
92317872 CTGAAACTACT
1 CTGAACCTACT
92317883 GAAAATTTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.34, C:0.31, G:0.09, T:0.26
Consensus pattern (12 bp):
CTGAACCTACTA
Found at i:92321332 original size:12 final size:12
Alignment explanation
Indices: 92321315--92321339 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
92321305 AGTGATACAA
92321315 AGTTAGGAGTAG
1 AGTTAGGAGTAG
92321327 AGTTAGGAGTAG
1 AGTTAGGAGTAG
92321339 A
1 A
92321340 AAATATTGAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.00, G:0.40, T:0.24
Consensus pattern (12 bp):
AGTTAGGAGTAG
Found at i:92327656 original size:16 final size:16
Alignment explanation
Indices: 92327635--92327667 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
92327625 TATTATTTTT
92327635 GGGCCTTGGACTTCTA
1 GGGCCTTGGACTTCTA
92327651 GGGCCTTGGACTTCTA
1 GGGCCTTGGACTTCTA
92327667 G
1 G
92327668 ACTTAAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.24, G:0.33, T:0.30
Consensus pattern (16 bp):
GGGCCTTGGACTTCTA
Found at i:92328193 original size:13 final size:14
Alignment explanation
Indices: 92328175--92328204 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
92328165 AGTTTTACTT
92328175 TTATTTTTAAT-TA
1 TTATTTTTAATATA
92328188 TTATTTTTAATATA
1 TTATTTTTAATATA
92328202 TTA
1 TTA
92328205 GCTTCTTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
TTATTTTTAATATA
Found at i:92328221 original size:141 final size:143
Alignment explanation
Indices: 92328060--92328341 Score: 316
Period size: 141 Copynumber: 2.0 Consensus size: 143
92328050 TTTTTGACAC
** * * *** *** *
92328060 ATTAACTTATTTGATTAGATGGTCAAATGTTAGTGATTCTGTTTTTGAGTTTTAAGTTCAATTCC
1 ATTAACTTATTTGATTAGATGGTCAAATAATAATAATTCTAAATTTGAGTCCCAAGATCAATTCC
** * * * **
92328125 TATTCTACTCATATTTGTA-TTTTTATTTCATGTTGTTTCAAGTT-TTACTTTTATTTTTAATTA
66 TATTCTAAGCACATTTATATTTTTTAATTCATGTTACTTCAAGTTCTTACTTTTATTTTTAATTA
*
92328188 TTATTTTTAATAT
131 ATATTTTTAATAT
* * * *
92328201 ATTAGCTTCTTTGATTAGATGGTTAAATAATAATAATTTTAAATTTGAGTCCCAAGATCAATTCC
1 ATTAACTTATTTGATTAGATGGTCAAATAATAATAATTCTAAATTTGAGTCCCAAGATCAATTCC
* *
92328266 TCTTCTAAGCACATTTATATTTTTTAATTCATGTTACTTCAAGTTCTTATTTTTATTTTTAATTA
66 TATTCTAAGCACATTTATATTTTTTAATTCATGTTACTTCAAGTTCTTACTTTTATTTTTAATTA
*
92328331 ATGTTTTTAAT
131 ATATTTTTAAT
92328342 TAATAAATAT
Statistics
Matches: 113, Mismatches: 26, Indels: 2
0.80 0.18 0.01
Matches are distributed among these distances:
141 64 0.57
142 22 0.19
143 27 0.24
ACGTcount: A:0.28, C:0.10, G:0.10, T:0.53
Consensus pattern (143 bp):
ATTAACTTATTTGATTAGATGGTCAAATAATAATAATTCTAAATTTGAGTCCCAAGATCAATTCC
TATTCTAAGCACATTTATATTTTTTAATTCATGTTACTTCAAGTTCTTACTTTTATTTTTAATTA
ATATTTTTAATAT
Found at i:92328339 original size:13 final size:13
Alignment explanation
Indices: 92328321--92328345 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
92328311 CTTATTTTTA
92328321 TTTTTAATTAATG
1 TTTTTAATTAATG
92328334 TTTTTAATTAAT
1 TTTTTAATTAAT
92328346 AAATATATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (13 bp):
TTTTTAATTAATG
Found at i:92328982 original size:13 final size:13
Alignment explanation
Indices: 92328964--92328988 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
92328954 CAATATATTT
92328964 ATTAATTAAAAAC
1 ATTAATTAAAAAC
92328977 ATTAATTAAAAA
1 ATTAATTAAAAA
92328989 AAAAACTTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (13 bp):
ATTAATTAAAAAC
Found at i:92333406 original size:59 final size:59
Alignment explanation
Indices: 92333333--92333453 Score: 224
Period size: 59 Copynumber: 2.1 Consensus size: 59
92333323 CGAGCTCTGG
92333333 CTTGTAATCCTTCTCATTCACACCCACTACAAACATTTGCTTGGAGCAGAGATCACAAC
1 CTTGTAATCCTTCTCATTCACACCCACTACAAACATTTGCTTGGAGCAGAGATCACAAC
* *
92333392 CTTGTAATCCTTCTCGTTTACACCCACTACAAACATTTGCTTGGAGCAGAGATCACAAC
1 CTTGTAATCCTTCTCATTCACACCCACTACAAACATTTGCTTGGAGCAGAGATCACAAC
92333451 CTT
1 CTT
92333454 CTTATCACCA
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 60 1.00
ACGTcount: A:0.29, C:0.30, G:0.12, T:0.29
Consensus pattern (59 bp):
CTTGTAATCCTTCTCATTCACACCCACTACAAACATTTGCTTGGAGCAGAGATCACAAC
Found at i:92333778 original size:8 final size:8
Alignment explanation
Indices: 92333765--92333792 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
92333755 AGGAGGGCCA
92333765 AATTGAAG
1 AATTGAAG
92333773 AATTGAAG
1 AATTGAAG
92333781 AATTGAAG
1 AATTGAAG
92333789 AATT
1 AATT
92333793 ATTGGTTGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.21, T:0.29
Consensus pattern (8 bp):
AATTGAAG
Found at i:92333853 original size:18 final size:18
Alignment explanation
Indices: 92333832--92333874 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
92333822 GAAATTGTCA
92333832 AAATTTTATATATAGTTT
1 AAATTTTATATATAGTTT
* * *
92333850 AAATTTGATTTTTAGTTT
1 AAATTTTATATATAGTTT
*
92333868 ATATTTT
1 AAATTTT
92333875 TTAGGAGAAA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (18 bp):
AAATTTTATATATAGTTT
Found at i:92340155 original size:7 final size:7
Alignment explanation
Indices: 92340143--92340167 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
92340133 CTTTCCCTTT
92340143 CCACTTA
1 CCACTTA
92340150 CCACTTA
1 CCACTTA
92340157 CCACTTA
1 CCACTTA
92340164 CCAC
1 CCAC
92340168 CATTTCCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.48, G:0.00, T:0.24
Consensus pattern (7 bp):
CCACTTA
Found at i:92344819 original size:9 final size:9
Alignment explanation
Indices: 92344795--92344830 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
92344785 AAATTTGTTG
*
92344795 GAAAAAATA
1 GAAAAAAAA
92344804 GAGAAAAAAA
1 GA-AAAAAAA
92344814 GAAAAAAAA
1 GAAAAAAAA
92344823 GAAAAAAA
1 GAAAAAAA
92344831 TATTGAGCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
9 17 0.68
10 8 0.32
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (9 bp):
GAAAAAAAA
Found at i:92344819 original size:19 final size:17
Alignment explanation
Indices: 92344795--92344830 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 17
92344785 AAATTTGTTG
92344795 GAAAAAATAGAGAAAAAAA
1 GAAAAAA-A-AGAAAAAAA
92344814 GAAAAAAAAGAAAAAAA
1 GAAAAAAAAGAAAAAAA
92344831 TATTGAGCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.53
18 1 0.06
19 7 0.41
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (17 bp):
GAAAAAAAAGAAAAAAA
Found at i:92348307 original size:3 final size:3
Alignment explanation
Indices: 92348299--92348323 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
92348289 GTCAGCCCCA
92348299 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
92348324 TTATTATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:92356053 original size:46 final size:46
Alignment explanation
Indices: 92355986--92356130 Score: 197
Period size: 45 Copynumber: 3.2 Consensus size: 46
92355976 GGAAAATGAT
92355986 TAAGACCATAGTTGAAAGACACTATGGCACTATACCAGAGAATAAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATACCAGAGAATAAA
* * *
92356032 TAAGACCATAATTGAAAGACACTATGACACTAT-CC-GAAGGATAAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATACCAG-AGAATAAA
* * * *
92356077 TAAGACCATAGTTGAAAGATACTATGGCACCATACCAGA-AATGAG
1 TAAGACCATAGTTGAAAGACACTATGGCACTATACCAGAGAATAAA
92356122 TAAGACCAT
1 TAAGACCAT
92356131 GACGGAAAGA
Statistics
Matches: 86, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
44 1 0.01
45 50 0.58
46 34 0.40
47 1 0.01
ACGTcount: A:0.45, C:0.18, G:0.17, T:0.20
Consensus pattern (46 bp):
TAAGACCATAGTTGAAAGACACTATGGCACTATACCAGAGAATAAA
Found at i:92356139 original size:45 final size:43
Alignment explanation
Indices: 92355986--92356147 Score: 148
Period size: 45 Copynumber: 3.6 Consensus size: 43
92355976 GGAAAATGAT
92355986 TAAGACCATAGTTGAAAGACACTATGGCACTATACCAGAGAATAAA
1 TAAGACCATAG--GAAAGACACTATGGCACTATACCAGA-AATAAA
* *
92356032 TAAGACCATAATTGAAAGACACTATGACACTAT-CC-GAAGGATAAA
1 TAAGACCAT-A-GGAAAGACACTATGGCACTATACCAGAA--ATAAA
* * * *
92356077 TAAGACCATAGTTGAAAGATACTATGGCACCATACCAGAAATGAG
1 TAAGACCATAG--GAAAGACACTATGGCACTATACCAGAAATAAA
*
92356122 TAAGACCATGACGGAAAGACATTATG
1 TAAGACCAT-A-GGAAAGACACTATG
92356148 ACATCATGAT
Statistics
Matches: 96, Mismatches: 10, Indels: 21
0.76 0.08 0.17
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 56 0.58
46 31 0.32
47 5 0.05
ACGTcount: A:0.44, C:0.17, G:0.19, T:0.20
Consensus pattern (43 bp):
TAAGACCATAGGAAAGACACTATGGCACTATACCAGAAATAAA
Found at i:92356168 original size:45 final size:45
Alignment explanation
Indices: 92356119--92356309 Score: 285
Period size: 45 Copynumber: 4.3 Consensus size: 45
92356109 TACCAGAAAT
* * * *
92356119 GAGTAAGACCATGACGGAAAGACATTATGACATCATGATTCTATC
1 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTATC
92356164 GAGTAAGACCATGACTGAAAGACGTT-TGGCATCACGATTCTATC
1 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTATC
* *
92356208 GAGTAAGACTATGACTGAAAGACGTTATGGCATCACGATTCTATT
1 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTATC
* * *
92356253 AAGTAAGACCATGATTGAGAGACGTTATGGCATCACGATTCTATC
1 GAGTAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTATC
*
92356298 AAGTAAGACCAT
1 GAGTAAGACCAT
92356310 AGCTAAAAGA
Statistics
Matches: 134, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
44 41 0.31
45 93 0.69
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (45 bp):
GAGTAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTATC
Found at i:92356236 original size:89 final size:90
Alignment explanation
Indices: 92356119--92356309 Score: 285
Period size: 89 Copynumber: 2.1 Consensus size: 90
92356109 TACCAGAAAT
* *
92356119 GAGTAAGACCATGACGGAAAGACATTATGACATCATGATTCTATCGAGTAAGACCATGACTGAAA
1 GAGTAAGACCATGACGGAAAGACATTATGACATCACGATTCTATCAAGTAAGACCATGACTGAAA
92356184 GACGTT-TGGCATCACGATTCTATC
66 GACGTTATGGCATCACGATTCTATC
* * * * * * *
92356208 GAGTAAGACTATGACTGAAAGACGTTATGGCATCACGATTCTATTAAGTAAGACCATGATTGAGA
1 GAGTAAGACCATGACGGAAAGACATTATGACATCACGATTCTATCAAGTAAGACCATGACTGAAA
92356273 GACGTTATGGCATCACGATTCTATC
66 GACGTTATGGCATCACGATTCTATC
*
92356298 AAGTAAGACCAT
1 GAGTAAGACCAT
92356310 AGCTAAAAGA
Statistics
Matches: 90, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
89 62 0.69
90 28 0.31
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (90 bp):
GAGTAAGACCATGACGGAAAGACATTATGACATCACGATTCTATCAAGTAAGACCATGACTGAAA
GACGTTATGGCATCACGATTCTATC
Found at i:92356333 original size:90 final size:89
Alignment explanation
Indices: 92356120--92356333 Score: 252
Period size: 89 Copynumber: 2.4 Consensus size: 89
92356110 ACCAGAAATG
** ** * * *
92356120 AGTAAGACCATGACGGAAAGACATTATGACATCATGATTCTATCGAGTAAGACCATGACTGAAAG
1 AGTAAGACCATGACTAAAAGACGCTATGAGATCACGATTCTATCAAGTAAGACCATGACTGAAAG
*
92356185 ACGTTTGGCATCACGATTCTATCG
66 ACGTTTGGCATCACGATTCTATCA
* * * * * *
92356209 AGTAAGACTATGACTGAAAGACGTTATG-GCATCACGATTCTATTAAGTAAGACCATGATTGAGA
1 AGTAAGACCATGACTAAAAGACGCTATGAG-ATCACGATTCTATCAAGTAAGACCATGACTGAAA
92356273 GACGTTATGGCATCACGATTCTATCA
65 GACGTT-TGGCATCACGATTCTATCA
*
92356299 AGTAAGACCAT-AGCTAAAAGATGCTATGAGATCAC
1 AGTAAGACCATGA-CTAAAAGACGCTATGAGATCAC
92356334 AAATCAAACA
Statistics
Matches: 107, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
89 61 0.57
90 45 0.42
91 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (89 bp):
AGTAAGACCATGACTAAAAGACGCTATGAGATCACGATTCTATCAAGTAAGACCATGACTGAAAG
ACGTTTGGCATCACGATTCTATCA
Found at i:92356350 original size:90 final size:89
Alignment explanation
Indices: 92356167--92356365 Score: 222
Period size: 90 Copynumber: 2.2 Consensus size: 89
92356157 TTCTATCGAG
* * * *
92356167 TAAGACCATGACTGAAAGACGTTTGGCATCACGATTCTATCGAGTAAGACTATGACTGAAAGACG
1 TAAGACCATGATTGAAAGACGTTTGGCATCACGATTCTATCAAGTAAGACCATGACTAAAAGACG
* * * * ** *
92356232 TTATGGCATCACGATTCTATTAAG
66 CTATGGCATCACAAATCAAACAAA
*
92356256 TAAGACCATGATTGAGAGACGTTATGGCATCACGATTCTATCAAGTAAGACCAT-AGCTAAAAGA
1 TAAGACCATGATTGAAAGACGTT-TGGCATCACGATTCTATCAAGTAAGACCATGA-CTAAAAGA
*
92356320 TGCTATGAG-ATCACAAATCAAACAAA
64 CGCTATG-GCATCACAAATCAAACAAA
* *
92356346 TAAGATCATGGTTGAAAGAC
1 TAAGACCATGATTGAAAGAC
92356366 ACTCTGGCAA
Statistics
Matches: 91, Mismatches: 16, Indels: 5
0.81 0.14 0.04
Matches are distributed among these distances:
89 22 0.24
90 68 0.75
91 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (89 bp):
TAAGACCATGATTGAAAGACGTTTGGCATCACGATTCTATCAAGTAAGACCATGACTAAAAGACG
CTATGGCATCACAAATCAAACAAA
Found at i:92356394 original size:46 final size:45
Alignment explanation
Indices: 92356339--92356511 Score: 220
Period size: 46 Copynumber: 3.8 Consensus size: 45
92356329 ATCACAAATC
* *
92356339 AAACAAATAAGATCATGGTTGAAAGACACTCTGGCAACACGATGGA
1 AAACAAATAAGACCATGGTTGAAAGACACTATGGCAACACGAT-GA
* *
92356385 AAACAAATAAGACCATGGTTGAAAGACACTATGGCAACACAACAGA
1 AAACAAATAAGACCATGGTTGAAAGACACTATGGCAACACGA-TGA
** * * *
92356431 AAATGAATAAGACCATGGCTGAAAGACACTATGGCATCAAGATGA
1 AAACAAATAAGACCATGGTTGAAAGACACTATGGCAACACGATGA
* * *
92356476 GAATAAATAAGACCATGGTTGAAAGACACCATGGCA
1 AAACAAATAAGACCATGGTTGAAAGACACTATGGCA
92356512 TACTCTGATC
Statistics
Matches: 111, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
45 34 0.31
46 77 0.69
ACGTcount: A:0.46, C:0.17, G:0.21, T:0.16
Consensus pattern (45 bp):
AAACAAATAAGACCATGGTTGAAAGACACTATGGCAACACGATGA
Found at i:92356426 original size:91 final size:91
Alignment explanation
Indices: 92356339--92356511 Score: 247
Period size: 92 Copynumber: 1.9 Consensus size: 91
92356329 ATCACAAATC
* * * *
92356339 AAACAAATAAGATCATGGTTGAAAGACACTCTGGCAACACGATGGAAAACAAATAAGACCATGGT
1 AAACAAATAAGACCATGGCTGAAAGACACTATGGCAACAAGAT-GAAAACAAATAAGACCATGGT
*
92356404 TGAAAGACACTATGGCAACACAACAGA
65 TGAAAGACACCATGGCAACACAACAGA
** * * *
92356431 AAATGAATAAGACCATGGCTGAAAGACACTATGGCATCAAGATGAGAATAAATAAGACCATGGTT
1 AAACAAATAAGACCATGGCTGAAAGACACTATGGCAACAAGATGAAAACAAATAAGACCATGGTT
92356496 GAAAGACACCATGGCA
66 GAAAGACACCATGGCA
92356512 TACTCTGATC
Statistics
Matches: 71, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
91 35 0.49
92 36 0.51
ACGTcount: A:0.46, C:0.17, G:0.21, T:0.16
Consensus pattern (91 bp):
AAACAAATAAGACCATGGCTGAAAGACACTATGGCAACAAGATGAAAACAAATAAGACCATGGTT
GAAAGACACCATGGCAACACAACAGA
Found at i:92356466 original size:92 final size:91
Alignment explanation
Indices: 92356344--92356511 Score: 255
Period size: 91 Copynumber: 1.8 Consensus size: 91
92356334 AAATCAAACA
* * * *
92356344 AATAAGATCATGGTTGAAAGACACTCTGGCAACACGATGGAAAACAAATAAGACCATGGTTGAAA
1 AATAAGACCATGGCTGAAAGACACTATGGCAACAAGAT-GAAAACAAATAAGACCATGGTTGAAA
*
92356409 GACACTATGGCAACACAACAGAAAATG
65 GACACCATGGCAACACAACAGAAAATG
* * *
92356436 AATAAGACCATGGCTGAAAGACACTATGGCATCAAGATGAGAATAAATAAGACCATGGTTGAAAG
1 AATAAGACCATGGCTGAAAGACACTATGGCAACAAGATGAAAACAAATAAGACCATGGTTGAAAG
92356501 ACACCATGGCA
66 ACACCATGGCA
92356512 TACTCTGATC
Statistics
Matches: 68, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
91 35 0.51
92 33 0.49
ACGTcount: A:0.45, C:0.17, G:0.21, T:0.17
Consensus pattern (91 bp):
AATAAGACCATGGCTGAAAGACACTATGGCAACAAGATGAAAACAAATAAGACCATGGTTGAAAG
ACACCATGGCAACACAACAGAAAATG
Found at i:92363273 original size:22 final size:22
Alignment explanation
Indices: 92363247--92363295 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
92363237 CCGTAGAGTC
* *
92363247 TCATACTACCCTTAAAGGGCTT
1 TCATACTACCCGTAAAAGGCTT
*
92363269 TCATACTACTCGTAAAAGGCTT
1 TCATACTACCCGTAAAAGGCTT
92363291 TCATA
1 TCATA
92363296 ACTATGTGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.33
Consensus pattern (22 bp):
TCATACTACCCGTAAAAGGCTT
Found at i:92366756 original size:28 final size:28
Alignment explanation
Indices: 92366725--92366794 Score: 68
Period size: 28 Copynumber: 2.5 Consensus size: 28
92366715 ATATATGTAT
92366725 ATGGCACTTAGTGTGCAAAATATTAAGA
1 ATGGCACTTAGTGTGCAAAATATTAAGA
* * ** * * *
92366753 ATGGAACTTGGTGTGTGAGATATTGAGT
1 ATGGCACTTAGTGTGCAAAATATTAAGA
*
92366781 ATGACACTTAGTGT
1 ATGGCACTTAGTGT
92366795 ACGAGACATC
Statistics
Matches: 32, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.31, C:0.09, G:0.27, T:0.33
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCAAAATATTAAGA
Found at i:92370249 original size:17 final size:17
Alignment explanation
Indices: 92370218--92370275 Score: 86
Period size: 16 Copynumber: 3.6 Consensus size: 17
92370208 TATTATTTGA
*
92370218 ATAACCTTTTT-AATCC
1 ATAACCTTTTTCAATCG
92370234 ATAACCTTTTTCAATCG
1 ATAACCTTTTTCAATCG
92370251 ATAACC-TTTTC-ATCG
1 ATAACCTTTTTCAATCG
92370266 ATAACCTTTT
1 ATAACCTTTT
92370276 CATTGTAAAC
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
15 10 0.26
16 19 0.49
17 10 0.26
ACGTcount: A:0.29, C:0.24, G:0.03, T:0.43
Consensus pattern (17 bp):
ATAACCTTTTTCAATCG
Found at i:92370267 original size:15 final size:15
Alignment explanation
Indices: 92370218--92370309 Score: 96
Period size: 15 Copynumber: 5.9 Consensus size: 15
92370208 TATTATTTGA
* *
92370218 ATAACCTTTTTAATCC
1 ATAACC-TTTTCATCG
92370234 ATAACCTTTTTCAATCG
1 ATAACC-TTTTC-ATCG
92370251 ATAACCTTTTCATCG
1 ATAACCTTTTCATCG
*
92370266 ATAACCTTTTCATTG
1 ATAACCTTTTCATCG
* *
92370281 -TAAACCTTTTCGTCA
1 AT-AACCTTTTCATCG
92370296 ATAACCTTTTCATC
1 ATAACCTTTTCATC
92370310 CTTTTCATTG
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
14 1 0.02
15 39 0.59
16 17 0.26
17 9 0.14
ACGTcount: A:0.28, C:0.25, G:0.04, T:0.42
Consensus pattern (15 bp):
ATAACCTTTTCATCG
Found at i:92370502 original size:14 final size:15
Alignment explanation
Indices: 92370478--92370506 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
92370468 ACATCATAAT
92370478 TTTATAATGAAATAC
1 TTTATAATGAAATAC
92370493 TTTA-AATGAAATAC
1 TTTATAATGAAATAC
92370507 AAACTTACCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.38
Consensus pattern (15 bp):
TTTATAATGAAATAC
Found at i:92371597 original size:22 final size:22
Alignment explanation
Indices: 92371569--92371613 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
92371559 GAAAATCTTA
92371569 CTAGAAATAGGTCCGGGTTTTG
1 CTAGAAATAGGTCCGGGTTTTG
92371591 CTAGAAATAGGTCCGGGTTTTG
1 CTAGAAATAGGTCCGGGTTTTG
92371613 C
1 C
92371614 ACTTTCATAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.22, C:0.16, G:0.31, T:0.31
Consensus pattern (22 bp):
CTAGAAATAGGTCCGGGTTTTG
Found at i:92373312 original size:22 final size:22
Alignment explanation
Indices: 92373274--92373315 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
92373264 TAGCAATTCT
*
92373274 GACATTCTAATCTCTGTGTTAC
1 GACATTCTAATCCCTGTGTTAC
92373296 GACATT-TAACTCCCTGTGTT
1 GACATTCTAA-TCCCTGTGTT
92373316 GCAGCATAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.40
Consensus pattern (22 bp):
GACATTCTAATCCCTGTGTTAC
Found at i:92387087 original size:40 final size:39
Alignment explanation
Indices: 92386996--92387178 Score: 188
Period size: 40 Copynumber: 4.6 Consensus size: 39
92386986 TCCTCGTTCA
* * * *
92386996 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
92387035 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
92387074 GAATGCCTTCGGGACTTTACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * * * * *
92387114 AAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
92387155 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
92387179 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
39 37 0.31
40 75 0.62
41 8 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:92394969 original size:40 final size:40
Alignment explanation
Indices: 92394848--92395108 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
92394838 TCCTCGTTCA
* * * * *
92394848 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
92394887 AATGCCTTCGGGAC-TAACCCGGATTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
92394925 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
92394965 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
92395005 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
92395045 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
92395085 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
92395109 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 17, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
37 8 0.04
38 25 0.13
39 31 0.16
40 127 0.64
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:92400750 original size:273 final size:273
Alignment explanation
Indices: 92400263--92400815 Score: 980
Period size: 273 Copynumber: 2.0 Consensus size: 273
92400253 TGCTTCAAGG
*
92400263 CAGTTGAAGATACATGGGTGAAACTACCCTACTCATGATTTGGAGTTAGCTGCTGTGGGTTTTGC
1 CAGTTGAAGATACATGGGTGAAACAACCCTACTCATGATTTGGAGTTAGCTGCTGTGGGTTTTGC
*
92400328 ACTTAAGATTTGGCGTCATTATTTGTATAGGGAAAGGTGTGTTATCTATATAGATCATAAGAGCC
66 ACTCAAGATTTGGCGTCATTATTTGTATAGGGAAAGGTGTGTTATCTATATAGATCATAAGAGCC
*
92400393 TTAAGTATCTCATTACCCAAAAGGAGTTGAATTTAAGACAATGACATTGGATTGAGTTGTTAAAG
131 TTAAGTACCTCATTACCCAAAAGGAGTTGAATTTAAGACAATGACATTGGATTGAGTTGTTAAAG
**
92400458 GATTATGATTGTGTGATAGAGTATTATACTGGCAAGGCGAATGTAATTTTTGATGCTTTGAGTAG
196 GATTATGATTGTGTGATAGAGTATTATACTGGCAAGGAAAATGTAATTTTTGATGCTTTGAGTAG
*
92400523 GAAGTTGATGGCA
261 GAAGTCGATGGCA
* *
92400536 CAGTTGAAGATACATGGGTGAAACAACCCTACTCATGATTTGGAGTTAGCTGTTGTGGTTTTTGC
1 CAGTTGAAGATACATGGGTGAAACAACCCTACTCATGATTTGGAGTTAGCTGCTGTGGGTTTTGC
* * * *
92400601 ACTCAAGATTTGGCGTTATTATTTGTATGGGGAAATGTGTGTTATCTATATGGATCATAAGAGCC
66 ACTCAAGATTTGGCGTCATTATTTGTATAGGGAAAGGTGTGTTATCTATATAGATCATAAGAGCC
*
92400666 TTAAGTACCTCATTACCCAAAAGGAGTTGAATTTAAGACAGTGACATTGGATTGAGTTGTTAAAG
131 TTAAGTACCTCATTACCCAAAAGGAGTTGAATTTAAGACAATGACATTGGATTGAGTTGTTAAAG
92400731 GATTATGATTGTGTGATAGAGTATTATACTGGCAAGGAAAATGTAATTTTTGATGCTTTGAGTAG
196 GATTATGATTGTGTGATAGAGTATTATACTGGCAAGGAAAATGTAATTTTTGATGCTTTGAGTAG
92400796 GAAGTCGATGGCA
261 GAAGTCGATGGCA
*
92400809 AAGTTGA
1 CAGTTGA
92400816 GAGCTCTGTT
Statistics
Matches: 266, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
273 266 1.00
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (273 bp):
CAGTTGAAGATACATGGGTGAAACAACCCTACTCATGATTTGGAGTTAGCTGCTGTGGGTTTTGC
ACTCAAGATTTGGCGTCATTATTTGTATAGGGAAAGGTGTGTTATCTATATAGATCATAAGAGCC
TTAAGTACCTCATTACCCAAAAGGAGTTGAATTTAAGACAATGACATTGGATTGAGTTGTTAAAG
GATTATGATTGTGTGATAGAGTATTATACTGGCAAGGAAAATGTAATTTTTGATGCTTTGAGTAG
GAAGTCGATGGCA
Found at i:92404492 original size:28 final size:28
Alignment explanation
Indices: 92404460--92404529 Score: 90
Period size: 28 Copynumber: 2.5 Consensus size: 28
92404450 AATGAGATTG
92404460 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
* *
92404488 GCACTAAGTGTACGAGTTTGACTATTAA
1 GCACTAAGTGTGCGAGTTTGAATATTAA
92404516 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
92404530 GACTTACTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 32 0.86
29 4 0.11
30 1 0.03
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATATTAA
Found at i:92406429 original size:23 final size:24
Alignment explanation
Indices: 92406403--92406452 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
92406393 CCTATACTTG
92406403 TGATGTGTGAAATGT-TGTGAAAA
1 TGATGTGTGAAATGTATGTGAAAA
* * *
92406426 TGATTTGTGATATGTATGTTAAAA
1 TGATGTGTGAAATGTATGTGAAAA
92406450 TGA
1 TGA
92406453 GGTTAATACA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 13 0.57
24 10 0.43
ACGTcount: A:0.34, C:0.00, G:0.26, T:0.40
Consensus pattern (24 bp):
TGATGTGTGAAATGTATGTGAAAA
Found at i:92411056 original size:17 final size:15
Alignment explanation
Indices: 92411026--92411060 Score: 52
Period size: 17 Copynumber: 2.2 Consensus size: 15
92411016 CTGCATGATG
92411026 TTTCTTTCTCCTTCT
1 TTTCTTTCTCCTTCT
92411041 TTTCTTCTCTTCCTTCT
1 TTTCTT-TC-TCCTTCT
92411058 TTT
1 TTT
92411061 ATTTTTTATC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.33
16 2 0.11
17 10 0.56
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTCTTTCTCCTTCT
Found at i:92411391 original size:21 final size:21
Alignment explanation
Indices: 92411367--92411419 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
92411357 CATTTTCAGT
*
92411367 AACTTCTTCTTCTTCAGTAAC
1 AACTTCTTCTTCTGCAGTAAC
* *
92411388 AACTTCCTCTTCTGCAGTAGC
1 AACTTCTTCTTCTGCAGTAAC
92411409 AACTTCCTTCT
1 AACTT-CTTCT
92411420 AAACAACAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.21, C:0.32, G:0.08, T:0.40
Consensus pattern (21 bp):
AACTTCTTCTTCTGCAGTAAC
Found at i:92411393 original size:18 final size:18
Alignment explanation
Indices: 92411361--92411399 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
92411351 CTTTCTCATT
** *
92411361 TTCAGTAACTTCTTCTTC
1 TTCAGTAACAACTTCCTC
92411379 TTCAGTAACAACTTCCTC
1 TTCAGTAACAACTTCCTC
92411397 TTC
1 TTC
92411400 TGCAGTAGCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.21, C:0.31, G:0.05, T:0.44
Consensus pattern (18 bp):
TTCAGTAACAACTTCCTC
Found at i:92428609 original size:18 final size:19
Alignment explanation
Indices: 92428572--92428610 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
92428562 GAAAATAATC
*
92428572 AAATAATAACCAATGAAAG
1 AAATAATAACCAAGGAAAG
*
92428591 AAATAAT-ACCCAGGAAAG
1 AAATAATAACCAAGGAAAG
92428609 AA
1 AA
92428611 TCCACTTAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.62, C:0.13, G:0.13, T:0.13
Consensus pattern (19 bp):
AAATAATAACCAAGGAAAG
Found at i:92432859 original size:23 final size:23
Alignment explanation
Indices: 92432832--92432878 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
92432822 AAGACAAATG
92432832 ATAAGAA-AAGACAATAAAAATAA
1 ATAAGAATAAGA-AATAAAAATAA
*
92432855 ATAAGAATAATAAATAAAAATAA
1 ATAAGAATAAGAAATAAAAATAA
92432878 A
1 A
92432879 AATTTATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 19 0.86
24 3 0.14
ACGTcount: A:0.74, C:0.02, G:0.06, T:0.17
Consensus pattern (23 bp):
ATAAGAATAAGAAATAAAAATAA
Found at i:92433893 original size:17 final size:17
Alignment explanation
Indices: 92433871--92433906 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
92433861 TGTGTAGTTC
92433871 AAAAATATT-TTTTAATT
1 AAAAAT-TTATTTTAATT
92433888 AAAAATTTATTTTAATT
1 AAAAATTTATTTTAATT
92433905 AA
1 AA
92433907 TTTTAAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 2 0.11
17 16 0.89
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
AAAAATTTATTTTAATT
Found at i:92438959 original size:25 final size:25
Alignment explanation
Indices: 92438931--92439011 Score: 67
Period size: 25 Copynumber: 3.2 Consensus size: 25
92438921 AACTAAATGG
92438931 GAAAAAATTAACCAATAAGTAGGGA
1 GAAAAAATTAACCAATAAGTAGGGA
* *** * *
92438956 GAAAACATATGGTC-ATAACTAAATGG-
1 GAAAAAAT-TAACCAATAAGT--AGGGA
92438982 GAAAAAATTAACCAATAAGTAGGGA
1 GAAAAAATTAACCAATAAGTAGGGA
92439007 GAAAA
1 GAAAA
92439012 CGTATGGTCT
Statistics
Matches: 39, Mismatches: 12, Indels: 10
0.64 0.20 0.16
Matches are distributed among these distances:
24 3 0.08
25 19 0.49
26 14 0.36
27 3 0.08
ACGTcount: A:0.54, C:0.09, G:0.20, T:0.17
Consensus pattern (25 bp):
GAAAAAATTAACCAATAAGTAGGGA
Found at i:92438995 original size:51 final size:51
Alignment explanation
Indices: 92438919--92439020 Score: 195
Period size: 51 Copynumber: 2.0 Consensus size: 51
92438909 TATGCTAAAG
92438919 ATAACTAAATGGGAAAAAATTAACCAATAAGTAGGGAGAAAACATATGGTC
1 ATAACTAAATGGGAAAAAATTAACCAATAAGTAGGGAGAAAACATATGGTC
*
92438970 ATAACTAAATGGGAAAAAATTAACCAATAAGTAGGGAGAAAACGTATGGTC
1 ATAACTAAATGGGAAAAAATTAACCAATAAGTAGGGAGAAAACATATGGTC
92439021 TTTCTAGTAC
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.50, C:0.10, G:0.21, T:0.20
Consensus pattern (51 bp):
ATAACTAAATGGGAAAAAATTAACCAATAAGTAGGGAGAAAACATATGGTC
Found at i:92438999 original size:26 final size:26
Alignment explanation
Indices: 92438919--92438999 Score: 71
Period size: 26 Copynumber: 3.2 Consensus size: 26
92438909 TATGCTAAAG
92438919 ATAACTAAATGGGAAAAAATTAACCA
1 ATAACTAAATGGGAAAAAATTAACCA
* ***
92438945 ATAAGT--A-GGGAGAAAACATATGGTC-
1 ATAACTAAATGGGA-AAAA-AT-TAACCA
92438970 ATAACTAAATGGGAAAAAATTAACCA
1 ATAACTAAATGGGAAAAAATTAACCA
92438996 ATAA
1 ATAA
92439000 GTAGGGAGAA
Statistics
Matches: 40, Mismatches: 8, Indels: 14
0.65 0.13 0.23
Matches are distributed among these distances:
23 4 0.10
24 5 0.12
25 9 0.22
26 13 0.32
27 5 0.12
28 4 0.10
ACGTcount: A:0.54, C:0.10, G:0.16, T:0.20
Consensus pattern (26 bp):
ATAACTAAATGGGAAAAAATTAACCA
Found at i:92455863 original size:47 final size:47
Alignment explanation
Indices: 92455785--92456192 Score: 620
Period size: 47 Copynumber: 8.6 Consensus size: 47
92455775 CCCTTCGGGA
* * * * * *
92455785 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGG-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
92455831 CTCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CT-TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
92455879 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
92455926 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
92455973 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
92456020 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
92456069 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
92456118 CTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
92456167 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
92456193 CACAATTATC
Statistics
Matches: 336, Mismatches: 20, Indels: 11
0.92 0.05 0.03
Matches are distributed among these distances:
46 2 0.01
47 194 0.58
48 2 0.01
49 137 0.41
51 1 0.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:92456228 original size:98 final size:96
Alignment explanation
Indices: 92455840--92456192 Score: 557
Period size: 98 Copynumber: 3.7 Consensus size: 96
92455830 GCTCTGTCAC
* *
92455840 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACATTCACAT
* *
92455905 TCATCACATCGGCTATTAGGCCTTATCAC--
66 TCATCACATCAGCCATTAGGCCTTATCACAT
*
92455934 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACATTCACAT
* *
92455999 TCATCACATCGGCCATTAGACCTTATCACAT
66 TCATCACATCAGCCATTAGGCCTTATCACAT
* * *
92456030 GTATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATGTATATACACTTTCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA--TATATACACATTCAC
*
92456095 ATTCATCACATCGGCCATTAGGCCTTATCACAT
64 ATTCATCACATCAGCCATTAGGCCTTATCACAT
* *
92456128 ATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACATTCACAT
92456193 CACAATTATC
Statistics
Matches: 244, Mismatches: 11, Indels: 6
0.93 0.04 0.02
Matches are distributed among these distances:
94 91 0.37
96 61 0.25
98 92 0.38
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (96 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACATTCACAT
TCATCACATCAGCCATTAGGCCTTATCACAT
Found at i:92459835 original size:40 final size:40
Alignment explanation
Indices: 92459775--92460051 Score: 466
Period size: 40 Copynumber: 6.9 Consensus size: 40
92459765 CGAATACACG
* * * * *
92459775 TCACCAGCATGATTGCTCTTCGGGATTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
92459815 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
92459855 TCGCTAGCATGAATGCTCTTC-GGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
92459894 TCACTATCATGAATGCTCTTCGGGACTTAGTCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAG-CCCGGATACA
92459935 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
92459975 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCAGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
92460015 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
92460052 TTAGTACTCG
Statistics
Matches: 224, Mismatches: 11, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
39 37 0.17
40 148 0.66
41 39 0.17
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:92460076 original size:40 final size:40
Alignment explanation
Indices: 92459792--92460130 Score: 233
Period size: 40 Copynumber: 8.5 Consensus size: 40
92459782 CATGATTGCT
* * *
92459792 CTTCGGGATTTAGCACGGATATA-TCAC-TAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTTAGCA-CAATGC
* * *
92459831 TCTTCGGGACTTAGCCCGGATACA-TCGC-TAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTCACTTAGCA-CAATGC
* * *
92459871 TCTTC-GGACTTAGCCCGGATACA-TCAC-TATCATGAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTCACTTAGCA-CAATGC
* *
92459910 TCTTCGGGACTTAGTCCCGGATACA-TCAC-TAGCATGAATGC
1 -CTTCGGGACTTAG-CCCGGATATAGTCACTTAGCA-CAATGC
* *
92459951 TCTTCGGGACTTAGCCCGGATACA-TCAC-TAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTCACTTAGCA-CAATGC
* * *
92459991 TCTTCGGGACTTAGCCCAGATACA-TCAC-TAGCATGAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTCACTTAGCA-CAATGC
* *
92460031 TCTTCGGGACTTAGCCCGGATTTAGT-AC-TCGCCACCAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTCACTTAG-CA-CAATGC
* * *
92460072 CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCACTTAGCACAATGC
92460112 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
92460131 CATCATTCGA
Statistics
Matches: 271, Mismatches: 20, Indels: 16
0.88 0.07 0.05
Matches are distributed among these distances:
39 40 0.15
40 175 0.65
41 54 0.20
42 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTTAGCACAATGC
Found at i:92460092 original size:160 final size:161
Alignment explanation
Indices: 92459775--92460130 Score: 465
Period size: 160 Copynumber: 2.2 Consensus size: 161
92459765 CGAATACACG
* * * * *
92459775 TCACCAGCATGATTGCTCTTCGGGATTTAGCACGGATATATCACTAGCATGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
* * * **
92459840 CTTAGCCCGGATACATCGCTAGCATGAATGCTCTTCGGACTTAGCCCGGATACATCACTATCATG
66 CTTAGCCCAGATACATCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATACATCACTACCACC
92459905 AATGCTCTTCGGGACTTAGTCCCGGATA-CA
131 AATGCTCTTCGGGACTTAGTCCCGGATATCA
92459935 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
** *
92460000 CTTAGCCCAGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCC
66 CTTAGCCCAGATACATCACTAGCATGAATGCTCTTC-GGACTTAGCCCGGATACA-TCACT-ACC
**
92460064 ACCAATGC-CTTC-GGATCTTAGT-CCGGATATGG
128 ACCAATGCTCTTCGGGA-CTTAGTCCCGGATATCA
* *
92460096 TCACTTAGCA-CAAAGC-CTTCGGGACTTAGCCCGGA
1 TCAC-TAGCATGAATGCTCTTCGGGACTTAGCCCGGA
92460131 CATCATTCGA
Statistics
Matches: 173, Mismatches: 17, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
160 123 0.71
161 37 0.21
162 13 0.08
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (161 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
CTTAGCCCAGATACATCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATACATCACTACCACC
AATGCTCTTCGGGACTTAGTCCCGGATATCA
Found at i:92460472 original size:29 final size:29
Alignment explanation
Indices: 92460433--92460511 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
92460423 CTTAATAATC
*
92460433 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
92460463 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
92460492 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
92460512 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:92462704 original size:22 final size:22
Alignment explanation
Indices: 92462677--92462729 Score: 106
Period size: 22 Copynumber: 2.4 Consensus size: 22
92462667 ACTTTCACAT
92462677 TCATCACATCGGCCATTAGGCC
1 TCATCACATCGGCCATTAGGCC
92462699 TCATCACATCGGCCATTAGGCC
1 TCATCACATCGGCCATTAGGCC
92462721 TCATCACAT
1 TCATCACAT
92462730 ATATACACTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.25, C:0.36, G:0.15, T:0.25
Consensus pattern (22 bp):
TCATCACATCGGCCATTAGGCC
Found at i:92462706 original size:47 final size:47
Alignment explanation
Indices: 92462606--92462707 Score: 125
Period size: 47 Copynumber: 2.2 Consensus size: 47
92462596 CTTCGGGACT
* * * *
92462606 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCTC
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCTC
* * *
92462653 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC-C
1 TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCTC
92462699 TCATCACAT
1 T-ATCACAT
92462708 CGGCCATTAG
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
46 2 0.04
47 44 0.96
ACGTcount: A:0.26, C:0.32, G:0.10, T:0.31
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCTC
Found at i:92462811 original size:116 final size:116
Alignment explanation
Indices: 92462607--92462823 Score: 337
Period size: 116 Copynumber: 1.9 Consensus size: 116
92462597 TTCGGGACTT
* * * * *
92462607 ATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCTCTGTCACATATATACACTTT
1 ATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCTCTATCACATATATACACTTT
92462672 CACATTCATCACATCGGCCATTAGGCCTCATCACATCGGCCATTAGGCCTC
66 CACATTCATCACATCGGCCATTAGGCCTCATCACATCGGCCATTAGGCCTC
* * *
92462723 ATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC-CTTATCACATATATACACTT
1 ATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCTC-TATCACATATATACACTT
*
92462787 TCACATTCATCACATCGGCCATTAGGCCTTATCACAT
65 TCACATTCATCACATCGGCCATTAGGCCTCATCACAT
92462824 ATATATACAC
Statistics
Matches: 91, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
115 1 0.01
116 90 0.99
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.31
Consensus pattern (116 bp):
ATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCTCTATCACATATATACACTTT
CACATTCATCACATCGGCCATTAGGCCTCATCACATCGGCCATTAGGCCTC
Found at i:92462847 original size:49 final size:49
Alignment explanation
Indices: 92462699--92463082 Score: 676
Period size: 49 Copynumber: 8.0 Consensus size: 49
92462689 CCATTAGGCC
*
92462699 TCATCACATCGGCCATTAGGCCTCATCAC--ATATATACACTTTCACAT
1 TCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACAT
*
92462746 TCATCACATCGGCTATTAGGCCTTATCAC--ATATATACACTTTCACAT
1 TCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACAT
92462793 TCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACAT
1 TCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACAT
92462842 TCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACAT
1 TCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACAT
92462889 TCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACAT
1 TCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACAT
*
92462938 TCATCACATCGGCCATTAGGCCTTATCACATGTATATACACTTTCACAT
1 TCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACAT
*
92462987 TCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACAT
1 TCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACAT
92463036 TCATCACATCGGCCATTAGGCCTTATCACATATATATACA--TTCACAT
1 TCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACAT
92463083 CACAATTATC
Statistics
Matches: 327, Mismatches: 6, Indels: 8
0.96 0.02 0.02
Matches are distributed among these distances:
47 127 0.39
49 200 0.61
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (49 bp):
TCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACAT
Found at i:92462861 original size:96 final size:96
Alignment explanation
Indices: 92462699--92463082 Score: 691
Period size: 96 Copynumber: 4.0 Consensus size: 96
92462689 CCATTAGGCC
* *
92462699 TCATCACATCGGCCATTAGGCCTCATCAC--ATATATACACTTTCACATTCATCACATCGGCTAT
1 TCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCAT
92462762 TAGGCCTTATCACATATATACACTTTCACAT
66 TAGGCCTTATCACATATATACACTTTCACAT
92462793 TCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCAT
1 TCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCAT
92462858 TAGGCCTTATCACATATATACACTTTCACAT
66 TAGGCCTTATCACATATATACACTTTCACAT
92462889 TCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCAT
1 TCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCAT
92462954 TAGGCCTTATCACATGTATATACACTTTCACAT
66 TAGGCCTTATCACA--TATATACACTTTCACAT
*
92462987 TCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCAT
1 TCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCAT
* *
92463052 TAGGCCTTATCACATATATATACATTCACAT
66 TAGGCCTTATCACATATATACACTTTCACAT
92463083 CACAATTATC
Statistics
Matches: 281, Mismatches: 5, Indels: 6
0.96 0.02 0.02
Matches are distributed among these distances:
94 28 0.10
96 158 0.56
98 95 0.34
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (96 bp):
TCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCAT
TAGGCCTTATCACATATATACACTTTCACAT
Found at i:92464878 original size:20 final size:20
Alignment explanation
Indices: 92464853--92464892 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
92464843 GTGACATTTC
92464853 TCACCAAATAGATAGTGGCG
1 TCACCAAATAGATAGTGGCG
92464873 TCACCAAATAGATAGTGGCG
1 TCACCAAATAGATAGTGGCG
92464893 CCAAATCTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (20 bp):
TCACCAAATAGATAGTGGCG
Found at i:92464898 original size:17 final size:18
Alignment explanation
Indices: 92464855--92464898 Score: 63
Period size: 20 Copynumber: 2.4 Consensus size: 18
92464845 GACATTTCTC
92464855 ACCAAATAGATAGTGGCG
1 ACCAAATAGATAGTGGCG
92464873 TCACCAAATAGATAGTGGCG
1 --ACCAAATAGATAGTGGCG
92464893 -CCAAAT
1 ACCAAAT
92464899 CTTCAAAGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.25
20 18 0.75
ACGTcount: A:0.39, C:0.20, G:0.23, T:0.18
Consensus pattern (18 bp):
ACCAAATAGATAGTGGCG
Found at i:92465730 original size:29 final size:29
Alignment explanation
Indices: 92465691--92465769 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
92465681 CTTAATAATC
*
92465691 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
92465721 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
92465750 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
92465770 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:92468075 original size:49 final size:49
Alignment explanation
Indices: 92467909--92468309 Score: 662
Period size: 47 Copynumber: 8.4 Consensus size: 49
92467899 GCTCTGTCAC
*
92467909 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC--
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
*
92467956 ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC--
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
92468003 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
92468052 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
*
92468099 ATATATACACTTTCACATTCATCACATCGGCCATTAGACCTTATCACATAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--AT
92468150 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
*
92468199 GTATATACACTTTC-CATTCATCACATCGGCCATTAGG-C-TATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
*
92468245 ATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
92468294 ATATATACA--TTCACAT
1 ATATATACACTTTCACAT
92468310 CACAATTATC
Statistics
Matches: 337, Mismatches: 8, Indels: 18
0.93 0.02 0.05
Matches are distributed among these distances:
46 20 0.06
47 168 0.50
48 24 0.07
49 79 0.23
51 46 0.14
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (49 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
Found at i:92468088 original size:96 final size:96
Alignment explanation
Indices: 92467905--92468309 Score: 685
Period size: 96 Copynumber: 4.2 Consensus size: 96
92467895 CTCGGCTCTG
*
92467905 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC--ATATATACACTT
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
*
92467968 TCACATTCATCACATCGGCTATTAGGCCTTA
66 TCACATTCATCACATCGGCCATTAGGCCTTA
92467999 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
92468064 TCACATTCATCACATCGGCCATTAGGCCTTA
66 TCACATTCATCACATCGGCCATTAGGCCTTA
*
92468095 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGACCTTATCACATATATATATACAC
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATATACAC
92468160 TTTCACATTCATCACATCGGCCATTAGGCCTTA
64 TTTCACATTCATCACATCGGCCATTAGGCCTTA
*
92468193 TCACATGTATATACACTTTC-CATTCATCACATCGGCCATTAGG-C-TATCACATATATATACAT
1 TCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
92468255 TTTCACATTCATCACATCGGCCATTAGGCCTTA
64 TTTCACATTCATCACATCGGCCATTAGGCCTTA
* *
92468288 TCACATATATATACATTCACAT
1 TCACATATATACACTTTCACAT
92468310 CACAATTATC
Statistics
Matches: 297, Mismatches: 7, Indels: 14
0.93 0.02 0.04
Matches are distributed among these distances:
93 11 0.04
94 53 0.18
95 49 0.16
96 92 0.31
97 6 0.02
98 51 0.17
99 22 0.07
100 13 0.04
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (96 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
TCACATTCATCACATCGGCCATTAGGCCTTA
Found at i:92468347 original size:18 final size:20
Alignment explanation
Indices: 92468324--92468363 Score: 57
Period size: 18 Copynumber: 2.1 Consensus size: 20
92468314 ATTATCCAAA
92468324 ATATACT-TCATATAT-CAC
1 ATATACTATCATATATACAC
*
92468342 ATATACTATCATGTATACAC
1 ATATACTATCATATATACAC
92468362 AT
1 AT
92468364 TGTCTTGGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 7 0.37
19 7 0.37
20 5 0.26
ACGTcount: A:0.40, C:0.20, G:0.03, T:0.38
Consensus pattern (20 bp):
ATATACTATCATATATACAC
Found at i:92481138 original size:62 final size:62
Alignment explanation
Indices: 92481060--92481185 Score: 218
Period size: 62 Copynumber: 2.0 Consensus size: 62
92481050 ATAGTGAAAG
92481060 TAAAATTGGGATGCCAACTGTATGTGCTTTGTGTTAGAAGACATTAATTTGTT-AAAGATAGT
1 TAAAATTGGGATGCCAACTGTATGTGCTTTGTGTTAGAAGACATTAATTT-TTGAAAGATAGT
* *
92481122 TAAAATTGGGATGCCAACTGTGTGTGTTTTGTGTTAGAAGACATTAATTTTTGAAAGATAGT
1 TAAAATTGGGATGCCAACTGTATGTGCTTTGTGTTAGAAGACATTAATTTTTGAAAGATAGT
92481184 TA
1 TA
92481186 TATGTGCCTT
Statistics
Matches: 61, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
61 2 0.03
62 59 0.97
ACGTcount: A:0.32, C:0.07, G:0.23, T:0.38
Consensus pattern (62 bp):
TAAAATTGGGATGCCAACTGTATGTGCTTTGTGTTAGAAGACATTAATTTTTGAAAGATAGT
Found at i:92482273 original size:16 final size:17
Alignment explanation
Indices: 92482252--92482286 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
92482242 TAATGTTTAG
92482252 GAAAATTA-TTAATTGA
1 GAAAATTACTTAATTGA
92482268 GAAAATTATCTTAATTGA
1 GAAAATTA-CTTAATTGA
92482286 G
1 G
92482287 GGGTTAATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
18 9 0.53
ACGTcount: A:0.46, C:0.03, G:0.14, T:0.37
Consensus pattern (17 bp):
GAAAATTACTTAATTGA
Found at i:92483451 original size:20 final size:21
Alignment explanation
Indices: 92483412--92483451 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
92483402 CGTGTTTGCT
* *
92483412 TTCCGTTTAGCTCTTATGAGC
1 TTCCGTTTAACTCATATGAGC
92483433 TTCCG-TTAACTCATATGAG
1 TTCCGTTTAACTCATATGAG
92483452 TTTCAGTCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.20, C:0.23, G:0.17, T:0.40
Consensus pattern (21 bp):
TTCCGTTTAACTCATATGAGC
Found at i:92483536 original size:21 final size:21
Alignment explanation
Indices: 92483511--92483575 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 21
92483501 TAGCCTTCGG
92483511 GCTTCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCACTTATGT
*
92483532 GCTTCAG-TTAGC-CTTCA-G-
1 GCTTCCGTTTAGCACTT-ATGT
*
92483550 GCTTCCATTTAGCACTTATGT
1 GCTTCCGTTTAGCACTTATGT
92483571 GCTTC
1 GCTTC
92483576 ACCTAGACTT
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
18 5 0.14
19 10 0.28
20 10 0.28
21 11 0.31
ACGTcount: A:0.15, C:0.26, G:0.18, T:0.40
Consensus pattern (21 bp):
GCTTCCGTTTAGCACTTATGT
Found at i:92483537 original size:39 final size:39
Alignment explanation
Indices: 92483493--92483593 Score: 157
Period size: 39 Copynumber: 2.6 Consensus size: 39
92483483 GCTCTGATGA
* *
92483493 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCAGGCTTCCATTTAGCACTTATGT
92483532 GCTTCAGTTAGCCTTCAGGCTTCCATTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCAGGCTTCCATTTAGCACTTATGT
** *
92483571 GCTTCACCTAGACTTCAGGCTTC
1 GCTTCAGTTAGCCTTCAGGCTTC
92483594 AGATCATGAT
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 57 1.00
ACGTcount: A:0.16, C:0.28, G:0.20, T:0.37
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCAGGCTTCCATTTAGCACTTATGT
Found at i:92484968 original size:20 final size:21
Alignment explanation
Indices: 92484929--92484968 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
92484919 TTTGGCATGA
*
92484929 TTTTCAACTATTTTAGGGTCAT
1 TTTTCAACTA-TTAAGGGTCAT
92484951 TTTTCAACTA-TAAGGGTC
1 TTTTCAACTATTAAGGGTC
92484969 CAAGGTTTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
22 10 0.59
ACGTcount: A:0.25, C:0.15, G:0.15, T:0.45
Consensus pattern (21 bp):
TTTTCAACTATTAAGGGTCAT
Found at i:92488343 original size:32 final size:33
Alignment explanation
Indices: 92488254--92488366 Score: 158
Period size: 33 Copynumber: 3.5 Consensus size: 33
92488244 CACCTAAAAG
* *
92488254 GTACAACTAGAAAAGGAAATGTACACTGTGTGT
1 GTACAACTTGAAAAGGAAATGTACACTTTGTGT
* *
92488287 GTACAACTTAAAAAGGAAACGTACACTTTGTGT
1 GTACAACTTGAAAAGGAAATGTACACTTTGTGT
*
92488320 GTAC-ACTTGAAAAGGAAATGTACACCTTGTGT
1 GTACAACTTGAAAAGGAAATGTACACTTTGTGT
92488352 GTACAA-TGTGAAAAG
1 GTACAACT-TGAAAAG
92488367 TGGTAGCTTC
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
32 30 0.42
33 41 0.58
ACGTcount: A:0.39, C:0.13, G:0.22, T:0.26
Consensus pattern (33 bp):
GTACAACTTGAAAAGGAAATGTACACTTTGTGT
Found at i:92488433 original size:33 final size:30
Alignment explanation
Indices: 92488354--92488439 Score: 93
Period size: 31 Copynumber: 2.7 Consensus size: 30
92488344 CCTTGTGTGT
*
92488354 ACAATGTGAAAAGTGGTAGCTTCGGCTACTTG
1 ACAA-GTG-AAAGTGGTAGCTTCGGCTACGTG
92488386 ATC-AGTGAATAGTGGTAGCTTCGGCTACAAGTG
1 A-CAAGTGAA-AGTGGTAGCTTCGGCTAC--GTG
92488419 ACAAGTGATAAGTGGTAGCTT
1 ACAAGTGA-AAGTGGTAGCTT
92488440 TAGCTACACT
Statistics
Matches: 47, Mismatches: 1, Indels: 11
0.80 0.02 0.19
Matches are distributed among these distances:
30 2 0.04
31 21 0.45
32 3 0.06
33 20 0.43
34 1 0.02
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.28
Consensus pattern (30 bp):
ACAAGTGAAAGTGGTAGCTTCGGCTACGTG
Found at i:92488533 original size:27 final size:27
Alignment explanation
Indices: 92488502--92488554 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
92488492 ATAATTGAAC
* *
92488502 TATGGCAAAGTGATAAAGTGTTCCAAT
1 TATGGAAAAGTGATAAAGTGTGCCAAT
*
92488529 TATGGAAAAGTGATATAGTGTGCCAA
1 TATGGAAAAGTGATAAAGTGTGCCAA
92488555 ACATAGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.38, C:0.09, G:0.25, T:0.28
Consensus pattern (27 bp):
TATGGAAAAGTGATAAAGTGTGCCAAT
Found at i:92488565 original size:27 final size:27
Alignment explanation
Indices: 92488508--92488567 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
92488498 GAACTATGGC
* ** *
92488508 AAAGTGATAAAGTGTTCCAATTATGGA
1 AAAGTGATAAAGTGTGCCAAACATAGA
* *
92488535 AAAGTGATATAGTGTGCCAAACATAGT
1 AAAGTGATAAAGTGTGCCAAACATAGA
92488562 AAAGTG
1 AAAGTG
92488568 TTCAGTGATC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.27
Consensus pattern (27 bp):
AAAGTGATAAAGTGTGCCAAACATAGA
Found at i:92488648 original size:34 final size:34
Alignment explanation
Indices: 92488617--92488684 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
92488607 TAATCCATGG
* *
92488617 CAAAGTGTGAAATGTAGTTATGGTATTTCCATAC
1 CAAACTGTGAAATGTAGGTATGGTATTTCCATAC
* * *
92488651 CGATCTGTGAAATGTAGGTATGGTGTTTCCATAC
1 CAAACTGTGAAATGTAGGTATGGTATTTCCATAC
92488685 TGAGTTGTGA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (34 bp):
CAAACTGTGAAATGTAGGTATGGTATTTCCATAC
Found at i:92492961 original size:17 final size:18
Alignment explanation
Indices: 92492933--92492969 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
92492923 AAAATTTATT
*
92492933 TTATAATAAAATGATATC
1 TTATAATAAAATAATATC
92492951 TTATAAT-AAATAATATC
1 TTATAATAAAATAATATC
92492968 TT
1 TT
92492970 TTTTAGACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (18 bp):
TTATAATAAAATAATATC
Found at i:92493815 original size:22 final size:20
Alignment explanation
Indices: 92493789--92493829 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
92493779 AATAATTGTT
92493789 TTATAATAATACATTATATTAA
1 TTATAATAATA-ATT-TATTAA
*
92493811 TTATATTAATAATTTATTA
1 TTATAATAATAATTTATTA
92493830 TAAGATTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 3 0.17
22 10 0.56
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.51
Consensus pattern (20 bp):
TTATAATAATAATTTATTAA
Found at i:92493902 original size:9 final size:9
Alignment explanation
Indices: 92493888--92493913 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
92493878 ATTTGAGATT
92493888 AATATTTTA
1 AATATTTTA
92493897 AATATTTTA
1 AATATTTTA
92493906 AATATTTT
1 AATATTTT
92493914 CAAAAAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (9 bp):
AATATTTTA
Found at i:92494083 original size:43 final size:42
Alignment explanation
Indices: 92494013--92494096 Score: 125
Period size: 41 Copynumber: 2.0 Consensus size: 42
92494003 AAAATAATTT
* *
92494013 AAAAAACTATTTTTTTAAATAACTT-AAAGTTTTTAAAAGGA
1 AAAAAACAATTTTTTTAAAAAACTTAAAAGTTTTTAAAAGGA
92494054 AAAAAACAATTTTTTTAAAAAATACTTAAAAGTTTTTAAAAGG
1 AAAAAACAATTTTTTT-AAAAA-ACTTAAAAGTTTTTAAAAGG
92494097 GAAAGTGATT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
41 15 0.39
42 4 0.11
43 4 0.11
44 15 0.39
ACGTcount: A:0.51, C:0.05, G:0.07, T:0.37
Consensus pattern (42 bp):
AAAAAACAATTTTTTTAAAAAACTTAAAAGTTTTTAAAAGGA
Found at i:92494746 original size:22 final size:23
Alignment explanation
Indices: 92494701--92494747 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
92494691 TTAACAAATT
* **
92494701 TATAAATTTCTAAAATATGTAAA
1 TATAAATTTCTAAAAAATCAAAA
92494724 TATAAATTT-TAAAAAATCAAAA
1 TATAAATTTCTAAAAAATCAAAA
92494746 TA
1 TA
92494748 AATATAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 12 0.57
23 9 0.43
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.36
Consensus pattern (23 bp):
TATAAATTTCTAAAAAATCAAAA
Found at i:92494787 original size:29 final size:28
Alignment explanation
Indices: 92494723--92494824 Score: 102
Period size: 29 Copynumber: 3.6 Consensus size: 28
92494713 AAATATGTAA
*
92494723 ATATAAATTTTAAAAAATCAAAATAAAT
1 ATATAAATTTTAAAAAATCAAAAAAAAT
*
92494751 ATAAAAATTTATAAAAAAT-AAAAAAAAGT
1 ATATAAATTT-TAAAAAATCAAAAAAAA-T
*
92494780 ATTTAAATTTTAAAAAAATTGCAAAAAAAA-
1 ATATAAATTTT-AAAAAA-T-CAAAAAAAAT
*
92494810 CT-TAAATTTTAAAAA
1 ATATAAATTTTAAAAA
92494825 TATATTCTAG
Statistics
Matches: 63, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
28 22 0.35
29 31 0.49
30 2 0.03
32 8 0.13
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (28 bp):
ATATAAATTTTAAAAAATCAAAAAAAAT
Found at i:92494842 original size:31 final size:29
Alignment explanation
Indices: 92494782--92494850 Score: 86
Period size: 31 Copynumber: 2.3 Consensus size: 29
92494772 AAAAAAGTAT
92494782 TTAAATTTTAAAAAAATTGCAAAAAAAAC
1 TTAAATTTTAAAAAAATTGCAAAAAAAAC
*
92494811 TTAAATTTTAAAAATATATT-CTAGAAAAAAC
1 TTAAATTTTAAAAA-A-ATTGC-AAAAAAAAC
*
92494842 TTAATTTTT
1 TTAAATTTT
92494851 TTTTAAACTA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
29 14 0.40
30 2 0.06
31 19 0.54
ACGTcount: A:0.54, C:0.06, G:0.03, T:0.38
Consensus pattern (29 bp):
TTAAATTTTAAAAAAATTGCAAAAAAAAC
Found at i:92495042 original size:8 final size:8
Alignment explanation
Indices: 92495020--92495069 Score: 50
Period size: 8 Copynumber: 6.4 Consensus size: 8
92495010 ATCTTTTGAT
92495020 ATTT-TAA
1 ATTTATAA
*
92495027 ATTT-TAT
1 ATTTATAA
*
92495034 ATTTATAT
1 ATTTATAA
*
92495042 ATGTTAGAA
1 AT-TTATAA
92495051 ATTTATAA
1 ATTTATAA
92495059 ATTTATAA
1 ATTTATAA
92495067 ATT
1 ATT
92495070 ATTTTTATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
7 10 0.27
8 21 0.57
9 6 0.16
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (8 bp):
ATTTATAA
Found at i:92509859 original size:27 final size:27
Alignment explanation
Indices: 92509829--92509884 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
92509819 AGAAAGCAGT
92509829 GAAGATTTCTTGTTAATGTCAGCAAGC
1 GAAGATTTCTTGTTAATGTCAGCAAGC
*
92509856 GAAGATTTCTTGTTAGTGTCAGCAAGC
1 GAAGATTTCTTGTTAATGTCAGCAAGC
92509883 GA
1 GA
92509885 TTGTTCCGAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (27 bp):
GAAGATTTCTTGTTAATGTCAGCAAGC
Done.