Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 277 of 349
Found at i:92510850 original size:17 final size:17
Alignment explanation
Indices: 92510828--92510869 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
92510818 TTTATCTCCA
*
92510828 TCTTTTGTACTATTCGT
1 TCTTTTGCACTATTCGT
*
92510845 TCTTTTGCACTCTTCGT
1 TCTTTTGCACTATTCGT
92510862 TCTTTTGC
1 TCTTTTGC
92510870 CATTATAGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.07, C:0.24, G:0.12, T:0.57
Consensus pattern (17 bp):
TCTTTTGCACTATTCGT
Found at i:92514346 original size:49 final size:49
Alignment explanation
Indices: 92514290--92514508 Score: 326
Period size: 47 Copynumber: 4.6 Consensus size: 49
92514280 TATTTGGATA
92514290 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
92514339 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
92514388 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
92514435 AATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGG-CGAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG-ATGTGATG
*
92514482 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
92514509 TCCCGAAGGG
Statistics
Matches: 159, Mismatches: 8, Indels: 8
0.91 0.05 0.05
Matches are distributed among these distances:
46 2 0.01
47 93 0.58
48 1 0.01
49 63 0.40
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.29
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:92514728 original size:37 final size:37
Alignment explanation
Indices: 92514627--92514728 Score: 168
Period size: 37 Copynumber: 2.8 Consensus size: 37
92514617 CCGAGCTCTA
* *
92514627 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGAGT
92514664 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGAGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGAGT
* *
92514701 AAGACCCGATAACTTCGTGTGGAGATTT
1 AAGACCCGATGACTACGTGTGGAGATTT
92514729 CGTCTGAGCT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGAGT
Found at i:92516270 original size:41 final size:42
Alignment explanation
Indices: 92516204--92516289 Score: 111
Period size: 41 Copynumber: 2.1 Consensus size: 42
92516194 TCATATAAGT
* * **
92516204 TTCAGTTTAACCCTATTGGGTTTCTGTTTAGCTCTTTTGAGC
1 TTCAATTTAACCCTATTGGGTTTCTGTTCAGCTCTTACGAGC
* *
92516246 TTCAATTTAACCTTA-TGTGTTTCTGTTCAGCTCTTACGAGC
1 TTCAATTTAACCCTATTGGGTTTCTGTTCAGCTCTTACGAGC
92516287 TTC
1 TTC
92516290 TGTTCAACCC
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
41 25 0.66
42 13 0.34
ACGTcount: A:0.16, C:0.21, G:0.16, T:0.47
Consensus pattern (42 bp):
TTCAATTTAACCCTATTGGGTTTCTGTTCAGCTCTTACGAGC
Found at i:92516290 original size:21 final size:22
Alignment explanation
Indices: 92516266--92516325 Score: 88
Period size: 21 Copynumber: 2.8 Consensus size: 22
92516256 CCTTATGTGT
* *
92516266 TTCTGTTCAGCTCTTACGA-GC
1 TTCTGTTCAACCCTTACGAGGC
92516287 TTCTGTTCAACCCTTAC-AGGC
1 TTCTGTTCAACCCTTACGAGGC
92516308 TTCTGTTCAACCCTTACG
1 TTCTGTTCAACCCTTACG
92516326 GGTTTTTGTT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
20 1 0.03
21 34 0.97
ACGTcount: A:0.17, C:0.32, G:0.15, T:0.37
Consensus pattern (22 bp):
TTCTGTTCAACCCTTACGAGGC
Found at i:92518778 original size:31 final size:30
Alignment explanation
Indices: 92518743--92518802 Score: 75
Period size: 31 Copynumber: 2.0 Consensus size: 30
92518733 TCTTGATTGA
*
92518743 TTTATTGATTTATTACGTTTGTTTATTTTTC
1 TTTATTGATTTATTACG-TTATTTATTTTTC
* * *
92518774 TTTATTTATTTTTTTCGTTATTTATTTTT
1 TTTATTGATTTATTACGTTATTTATTTTT
92518803 ATCTCTTCAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 11 0.44
31 14 0.56
ACGTcount: A:0.15, C:0.05, G:0.07, T:0.73
Consensus pattern (30 bp):
TTTATTGATTTATTACGTTATTTATTTTTC
Found at i:92518789 original size:16 final size:16
Alignment explanation
Indices: 92518768--92518802 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
92518758 CGTTTGTTTA
*
92518768 TTTTTCTTTATTTATT
1 TTTTTCGTTATTTATT
92518784 TTTTTCGTTATTTATT
1 TTTTTCGTTATTTATT
92518800 TTT
1 TTT
92518803 ATCTCTTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.11, C:0.06, G:0.03, T:0.80
Consensus pattern (16 bp):
TTTTTCGTTATTTATT
Found at i:92519749 original size:16 final size:17
Alignment explanation
Indices: 92519724--92519763 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
92519714 CACCTACCAT
*
92519724 TTATTATTATTTT-TAA
1 TTATTTTTATTTTATAA
92519740 TTATTTTTATTTTAGTAA
1 TTATTTTTATTTTA-TAA
92519758 TTATTT
1 TTATTT
92519764 GATAATGATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 12 0.57
18 9 0.43
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.70
Consensus pattern (17 bp):
TTATTTTTATTTTATAA
Found at i:92535384 original size:24 final size:22
Alignment explanation
Indices: 92535347--92535399 Score: 70
Period size: 24 Copynumber: 2.3 Consensus size: 22
92535337 AAAATGATAA
*
92535347 ATTTTGTCAATTTAATTATTATTT
1 ATTTTTTCAATTTAATTA--ATTT
*
92535371 ATTTTTTCACTTTAATTAATTT
1 ATTTTTTCAATTTAATTAATTT
92535393 ATTTTTT
1 ATTTTTT
92535400 AGTTAAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
22 11 0.41
24 16 0.59
ACGTcount: A:0.26, C:0.06, G:0.02, T:0.66
Consensus pattern (22 bp):
ATTTTTTCAATTTAATTAATTT
Found at i:92535408 original size:21 final size:22
Alignment explanation
Indices: 92535367--92535408 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
92535357 TTTAATTATT
*
92535367 ATTTATTTTTTCACTTTAATTA
1 ATTTATTTTTTCACTTAAATTA
*
92535389 ATTTATTTTTT-AGTTAAATT
1 ATTTATTTTTTCACTTAAATT
92535409 TGATTATTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (22 bp):
ATTTATTTTTTCACTTAAATTA
Found at i:92536169 original size:13 final size:13
Alignment explanation
Indices: 92536153--92536178 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
92536143 CAATGGATGA
92536153 TTACAAATGAGTG
1 TTACAAATGAGTG
92536166 TTACAAATGAGTG
1 TTACAAATGAGTG
92536179 GGAGACTCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (13 bp):
TTACAAATGAGTG
Found at i:92536633 original size:25 final size:26
Alignment explanation
Indices: 92536592--92536651 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 26
92536582 GCGTCAACAA
*
92536592 ATAAATTA-AAAATTATAAAAATATAC
1 ATAAAATATAAAATTATAAAAAT-TAC
*
92536618 -TAAAATATAAAA-TATAAAAATTTC
1 ATAAAATATAAAATTATAAAAATTAC
92536642 ATAAAATATA
1 ATAAAATATA
92536652 TATATAGCGG
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
24 2 0.07
25 24 0.80
26 4 0.13
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (26 bp):
ATAAAATATAAAATTATAAAAATTAC
Found at i:92546141 original size:69 final size:69
Alignment explanation
Indices: 92546061--92546189 Score: 240
Period size: 69 Copynumber: 1.9 Consensus size: 69
92546051 GAGGCACATG
92546061 ATAGCCGTTTGTCTATTCATCCTAGAAGTACCAAAATGCATAAAGATTTAAAGAAAATGTACTGG
1 ATAGCCGTTTGTCTATTCATCCTAGAAGTACCAAAATGCATAAAGATTTAAAGAAAATGTACTGG
92546126 TGGA
66 TGGA
* *
92546130 ATAGCCGTTTGTCTATTCATCCTTGAAGTACCAAAATGTATAAAGATTTAAAGAAAATGT
1 ATAGCCGTTTGTCTATTCATCCTAGAAGTACCAAAATGCATAAAGATTTAAAGAAAATGT
92546190 TCAGAGACAT
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 58 1.00
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (69 bp):
ATAGCCGTTTGTCTATTCATCCTAGAAGTACCAAAATGCATAAAGATTTAAAGAAAATGTACTGG
TGGA
Found at i:92550714 original size:101 final size:101
Alignment explanation
Indices: 92550535--92550747 Score: 300
Period size: 101 Copynumber: 2.1 Consensus size: 101
92550525 TATTCAAACG
* *
92550535 TAAGACCATGGTTGGACCATGACAGTGTATATATGTAAGACCATAGCTAGGTTATGGCATTCTGA
1 TAAGACCATGGTTGGACCATGACAGTGTATATATGTAAGACCATAGCTAGGCTATGACATTCTGA
* * *
92550600 TGATAAGATCATAACTGGGTTATGGCACTATGGACA
66 TGATAAGACCATAACTGGGTTAGGGCACTATGAACA
* * * * * * *
92550636 TAAGACCATGGTTGGACTATGGCATTGTTTATATGTAAGACCATAGTTGGGCTATGACATTCTGG
1 TAAGACCATGGTTGGACCATGACAGTGTATATATGTAAGACCATAGCTAGGCTATGACATTCTGA
*
92550701 TGATAAGACCATAACTGGGTTAGGGCACTATGAACG
66 TGATAAGACCATAACTGGGTTAGGGCACTATGAACA
*
92550737 TAAGACTATGG
1 TAAGACCATGG
92550748 CAAGGCCATG
Statistics
Matches: 98, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
101 98 1.00
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.29
Consensus pattern (101 bp):
TAAGACCATGGTTGGACCATGACAGTGTATATATGTAAGACCATAGCTAGGCTATGACATTCTGA
TGATAAGACCATAACTGGGTTAGGGCACTATGAACA
Found at i:92553552 original size:16 final size:16
Alignment explanation
Indices: 92553531--92553601 Score: 106
Period size: 16 Copynumber: 4.4 Consensus size: 16
92553521 GTTTGGTTCA
*
92553531 CTGTAATTGAATAGGG
1 CTGTAATTGAATAGAG
92553547 CTGTAATTGAATAGAG
1 CTGTAATTGAATAGAG
* *
92553563 CTGTGATGGAATAGAG
1 CTGTAATTGAATAGAG
*
92553579 CTGTAATAGAATAGAG
1 CTGTAATTGAATAGAG
92553595 CTGTAAT
1 CTGTAAT
92553602 AAGTAATTCA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.30
Consensus pattern (16 bp):
CTGTAATTGAATAGAG
Found at i:92553806 original size:26 final size:26
Alignment explanation
Indices: 92553757--92553860 Score: 86
Period size: 26 Copynumber: 4.0 Consensus size: 26
92553747 ATGATTATTG
* *
92553757 TTATTGTT-ATTAAATTTTAATAAAA
1 TTATTGTTAAATATATTTTAATAAAA
*
92553782 TTATTGTTAAATATATTTTATTAAAAA
1 TTATTGTTAAATATATTTTAAT-AAAA
* * ** * *
92553809 ATAAT-TTAACCATATTTTAACATAA
1 TTATTGTTAAATATATTTTAATAAAA
* *
92553834 TTATTATTAAATATAATTTAATAAAA
1 TTATTGTTAAATATATTTTAATAAAA
92553860 T
1 T
92553861 AATATATAAT
Statistics
Matches: 59, Mismatches: 17, Indels: 5
0.73 0.21 0.06
Matches are distributed among these distances:
25 14 0.24
26 38 0.64
27 7 0.12
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (26 bp):
TTATTGTTAAATATATTTTAATAAAA
Found at i:92554629 original size:30 final size:30
Alignment explanation
Indices: 92554595--92554651 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
92554585 CAATGAGGGT
92554595 TAAATTTATTATTATACCAATCAAAATGGC
1 TAAATTTATTATTATACCAATCAAAATGGC
*
92554625 TAAATTTATTATTATACCAATTAAAAT
1 TAAATTTATTATTATACCAATCAAAAT
92554652 CATGTATAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.46, C:0.11, G:0.04, T:0.40
Consensus pattern (30 bp):
TAAATTTATTATTATACCAATCAAAATGGC
Found at i:92555001 original size:30 final size:30
Alignment explanation
Indices: 92554965--92555024 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
92554955 CAGCCTAGAG
92554965 ATAAACAATCTTGTAGGGGCAAAATCTGTT
1 ATAAACAATCTTGTAGGGGCAAAATCTGTT
*
92554995 ATAAACAATCTTTTAGGGGCAAAATCTGTT
1 ATAAACAATCTTGTAGGGGCAAAATCTGTT
92555025 TCAGAAATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (30 bp):
ATAAACAATCTTGTAGGGGCAAAATCTGTT
Found at i:92557732 original size:18 final size:19
Alignment explanation
Indices: 92557709--92557749 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
92557699 ACAATTTTAG
* *
92557709 ACAAATATATTTC-TTTCT
1 ACAAATAAATTTCGTTACT
92557727 ACAAATAAATTTCGTTACT
1 ACAAATAAATTTCGTTACT
92557746 ACAA
1 ACAA
92557750 TTGCTGTATG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.41, C:0.17, G:0.02, T:0.39
Consensus pattern (19 bp):
ACAAATAAATTTCGTTACT
Found at i:92559035 original size:46 final size:44
Alignment explanation
Indices: 92558972--92559064 Score: 102
Period size: 44 Copynumber: 2.1 Consensus size: 44
92558962 AAAGAGCTAT
* *
92558972 AATGGAATAAATTTGTAATTAGTAATTCAATTGT-TT-GGTTGAATGA
1 AATGGAATAAATCTGTAA-TAGT-ATTC--TTGTATTCAGTTGAATGA
92559018 AATGGAATAGAA-CTGTAATAGTATTCTTGTATTCAGTTGAATGA
1 AATGGAATA-AATCTGTAATAGTATTCTTGTATTCAGTTGAATGA
92559062 AAT
1 AAT
92559065 AGATTTTGTA
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
42 4 0.10
43 2 0.05
44 16 0.38
45 4 0.10
46 14 0.33
47 2 0.05
ACGTcount: A:0.38, C:0.04, G:0.19, T:0.39
Consensus pattern (44 bp):
AATGGAATAAATCTGTAATAGTATTCTTGTATTCAGTTGAATGA
Found at i:92559244 original size:15 final size:15
Alignment explanation
Indices: 92559226--92559258 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
92559216 ACAATTATTT
92559226 TTATATTAAAAT-ATA
1 TTAT-TTAAAATCATA
92559241 TTATTTAAAATCATA
1 TTATTTAAAATCATA
92559256 TTA
1 TTA
92559259 AAATATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (15 bp):
TTATTTAAAATCATA
Found at i:92559364 original size:67 final size:68
Alignment explanation
Indices: 92559268--92559560 Score: 276
Period size: 58 Copynumber: 4.6 Consensus size: 68
92559258 AAAATATTTT
92559268 TTTAGTTTTATATTAAATTATATTAAAATATTTCAAATATTTTTATAATTTAATAAAAAATTAAT
1 TTTAGTTTTATATTAAATTATATTAAAATATTTCAAATATTTTTATAATTTAATAAAAAATTAAT
92559333 ATA
66 ATA
* * **
92559336 TTTATTTTTATATT-AAGTATATTAAAATATTT----TA-TTTTA-AA-TT-ATGTTAAAA-T-A
1 TTTAGTTTTATATTAAATTATATTAAAATATTTCAAATATTTTTATAATTTAAT-AAAAAATTAA
*
92559390 T-TT
65 TATA
* **
92559393 TTTAGTTTTATATTAAATTATATTAAAATATTTCAAATATTTTTATAATTTAATAACATTTTAAT
1 TTTAGTTTTATATTAAATTATATTAAAATATTTCAAATATTTTTATAATTTAATAAAAAATTAAT
92559458 ATA
66 ATA
* *
92559461 ATTA-TTCTTATATTAAA-TATATTAAAATATTT----TA-TTTTA-AA-TT-ATATTAAAA-T-
1 TTTAGTT-TTATATTAAATTATATTAAAATATTTCAAATATTTTTATAATTTAATA-AAAAATTA
*
92559514 AT-TT
64 ATATA
*
92559518 TTTAGTTTTATATTAAATTATATTAAAATATTTTAAATATTTT
1 TTTAGTTTTATATTAAATTATATTAAAATATTTCAAATATTTT
92559561 ATTTTTATAT
Statistics
Matches: 183, Mismatches: 20, Indels: 49
0.73 0.08 0.19
Matches are distributed among these distances:
57 28 0.15
58 38 0.21
59 7 0.04
60 9 0.05
61 4 0.02
62 14 0.08
63 12 0.07
64 2 0.01
65 3 0.02
66 3 0.02
67 36 0.20
68 27 0.15
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.54
Consensus pattern (68 bp):
TTTAGTTTTATATTAAATTATATTAAAATATTTCAAATATTTTTATAATTTAATAAAAAATTAAT
ATA
Found at i:92559367 original size:25 final size:26
Alignment explanation
Indices: 92559338--92559394 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 26
92559328 TTAATATATT
92559338 TATTTTTATATT-AAGTATATTAAAA
1 TATTTTTATATTAAAGTATATTAAAA
* * *
92559363 TA-TTTTATTTTAAATTATGTTAAAA
1 TATTTTTATATTAAAGTATATTAAAA
92559388 TATTTTT
1 TATTTTT
92559395 TAGTTTTATA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 8 0.30
25 15 0.56
26 4 0.15
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.58
Consensus pattern (26 bp):
TATTTTTATATTAAAGTATATTAAAA
Found at i:92559422 original size:125 final size:125
Alignment explanation
Indices: 92559227--92559560 Score: 560
Period size: 125 Copynumber: 2.7 Consensus size: 125
92559217 CAATTATTTT
* * *
92559227 TATATTAAAATATATTATTTAAAATCATATTAAAATATTTTTTTAGTTTTATATTAAATTATATT
1 TATATTAAAATATTTTATTTTAAATTATATTAAAATA-TTTTTTAGTTTTATATTAAATTATATT
* * *
92559292 AAAATATTTCAAATATTTTTATAATTTAATAAAAAATTAATATATTTATTTTTATATTAAG
65 AAAATATTTCAAATATTTTTATAATTTAATAAAAAATTAATATAATTATTCTTATATTAAA
*
92559353 TATATTAAAATATTTTATTTTAAATTATGTTAAAATATTTTTTAGTTTTATATTAAATTATATTA
1 TATATTAAAATATTTTATTTTAAATTATATTAAAATATTTTTTAGTTTTATATTAAATTATATTA
* **
92559418 AAATATTTCAAATATTTTTATAATTTAATAACATTTTAATATAATTATTCTTATATTAAA
66 AAATATTTCAAATATTTTTATAATTTAATAAAAAATTAATATAATTATTCTTATATTAAA
92559478 TATATTAAAATATTTTATTTTAAATTATATTAAAATATTTTTTAGTTTTATATTAAATTATATTA
1 TATATTAAAATATTTTATTTTAAATTATATTAAAATATTTTTTAGTTTTATATTAAATTATATTA
*
92559543 AAATATTTTAAATATTTT
66 AAATATTTCAAATATTTT
92559561 ATTTTTATAT
Statistics
Matches: 196, Mismatches: 12, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
125 163 0.83
126 33 0.17
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (125 bp):
TATATTAAAATATTTTATTTTAAATTATATTAAAATATTTTTTAGTTTTATATTAAATTATATTA
AAATATTTCAAATATTTTTATAATTTAATAAAAAATTAATATAATTATTCTTATATTAAA
Found at i:92559438 original size:25 final size:26
Alignment explanation
Indices: 92559410--92559519 Score: 82
Period size: 25 Copynumber: 4.1 Consensus size: 26
92559400 TTATATTAAA
*
92559410 TTATATTAAAATAT-TTCAAATATTT
1 TTATATTAAAATATATTAAAATATTT
* * *
92559435 TTATAATTTAATAACATTTTAATATAATTATTC
1 TTAT-A-TTAA-AATATATT-A-A-AA-TATTT
92559468 TTATATT-AAATATATTAAAATA-TT
1 TTATATTAAAATATATTAAAATATTT
* *
92559492 TTATTTTAAATTATATTAAAATATTT
1 TTATATTAAAATATATTAAAATATTT
92559518 TT
1 TT
92559520 TAGTTTTATA
Statistics
Matches: 67, Mismatches: 8, Indels: 19
0.71 0.09 0.20
Matches are distributed among these distances:
24 7 0.10
25 20 0.30
26 7 0.10
27 5 0.07
28 5 0.07
29 8 0.12
30 1 0.01
31 3 0.04
32 3 0.04
33 8 0.12
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.54
Consensus pattern (26 bp):
TTATATTAAAATATATTAAAATATTT
Found at i:92559516 original size:33 final size:32
Alignment explanation
Indices: 92559468--92559565 Score: 115
Period size: 33 Copynumber: 2.9 Consensus size: 32
92559458 ATAATTATTC
92559468 TTATATTAAATATATTAAAATATTTTATTTTAAA
1 TTATATTAAA-ATATT-AAATATTTTATTTTAAA
*** *
92559502 TTATATTAAAATATTTTTTAGTTTTATATTAAA
1 TTATATTAAAATATTAAATA-TTTTATTTTAAA
92559535 TTATATTAAAATATTTTAAATATTTTATTTT
1 TTATATTAAAATA--TTAAATATTTTATTTT
92559566 TATATTTTTT
Statistics
Matches: 53, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
32 2 0.04
33 29 0.55
34 18 0.34
35 4 0.08
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (32 bp):
TTATATTAAAATATTAAATATTTTATTTTAAA
Found at i:92563228 original size:47 final size:46
Alignment explanation
Indices: 92563021--92563241 Score: 171
Period size: 47 Copynumber: 4.7 Consensus size: 46
92563011 ATTGTGTGCT
* *
92563021 AGTGTAAGA-CATGTCTGGGA-AT-GCATCGACCATATTAT-GAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-AAC-T-TGATGGAGAGCC
* * * ***
92563066 AGTGTAGGATCATGTTTGGGACATGGCATCTGCAAGGAGATGTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCA--T-CAACTTGATG-GAGAGCC
* * * * * * *
92563116 AGTGTAAGACCATGTTTAGGACATGGCATCAGCCTCGATTTCGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCA-ACTTGA--TGGAGAGCC
92563165 AGTGTAAGACCATGTCTGGGACATGGCATCAACTTGATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAACTTGATGGA-GAGCC
*
92563212 AGTGTAAGACCATGTCTGGGACATAGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
92563242 GGCATTCTAC
Statistics
Matches: 139, Mismatches: 25, Indels: 22
0.75 0.13 0.12
Matches are distributed among these distances:
45 8 0.06
46 13 0.09
47 36 0.26
48 12 0.09
49 34 0.24
50 35 0.25
51 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAACTTGATGGAGAGCC
Found at i:92567437 original size:29 final size:29
Alignment explanation
Indices: 92567379--92567535 Score: 221
Period size: 29 Copynumber: 5.5 Consensus size: 29
92567369 ATAGTAAGTC
*
92567379 CGCACACTTAGTG-TTATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
92567407 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
92567436 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
*
92567465 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
* * * * *
92567493 TGCACACTTAGTGCTATGCA-ATTTAAACC
1 CGCACACTTAGTGCT-TACATAATCAAACT
92567522 CGCACACTTAGTGC
1 CGCACACTTAGTGC
92567536 CAATCTCATG
Statistics
Matches: 117, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
28 39 0.33
29 76 0.65
30 2 0.02
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCAAACT
Found at i:92567486 original size:57 final size:58
Alignment explanation
Indices: 92567379--92567535 Score: 221
Period size: 57 Copynumber: 2.7 Consensus size: 58
92567369 ATAGTAAGTC
*
92567379 CGCACACTTAGTG-TTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
*
92567436 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
* * * * *
92567493 TGCACACTTAGTGCTATGCA-ATTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCT-TACATAATCAAACTCGCACACTTAGTGC
92567536 CAATCTCATG
Statistics
Matches: 91, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
57 60 0.66
58 31 0.34
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (58 bp):
CGCACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACT
Found at i:92576071 original size:29 final size:29
Alignment explanation
Indices: 92576009--92576165 Score: 203
Period size: 29 Copynumber: 5.5 Consensus size: 29
92575999 ATAGTAAGTC
*
92576009 CGCACACTTAGTG-TTATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
92576037 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
*
92576066 CACACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
*
92576095 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
* * * * * *
92576123 TGCATACTTAGTGCTATGCA-ATTTAAACC
1 CGCACACTTAGTGCT-TACATAATCAAACT
92576152 CGCACACTTAGTGC
1 CGCACACTTAGTGC
92576166 CAATCTCATG
Statistics
Matches: 113, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
28 38 0.34
29 73 0.65
30 2 0.02
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCAAACT
Found at i:92576118 original size:57 final size:58
Alignment explanation
Indices: 92576011--92576165 Score: 199
Period size: 57 Copynumber: 2.7 Consensus size: 58
92576001 AGTAAGTCCG
*
92576011 CACACTTAGTG-TTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACTCA
1 CACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACTCA
* **
92576068 CACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGC-TATATAATCAAACTTG
1 CACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACTCA
* * * * *
92576125 CATACTTAGTGCTATGCA-ATTTAAACCCGCACACTTAGTGC
1 CACACTTAGTGCT-TACATAATCAAACTCGCACACTTAGTGC
92576166 CAATCTCATG
Statistics
Matches: 87, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
57 56 0.64
58 31 0.36
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.30
Consensus pattern (58 bp):
CACACTTAGTGCTTACATAATCAAACTCGCACACTTAGTGCTTACATAATCAAACTCA
Found at i:92592631 original size:37 final size:37
Alignment explanation
Indices: 92592581--92592651 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
92592571 TCCATAAATG
92592581 TGCTAAGCATGGGACAAAAATATGTATAAATTACGGT
1 TGCTAAGCATGGGACAAAAATATGTATAAATTACGGT
*
92592618 TGCTAAGCATGGGATAAAAATATGTATAAATTAC
1 TGCTAAGCATGGGACAAAAATATGTATAAATTAC
92592652 AGTTTATCAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.42, C:0.10, G:0.20, T:0.28
Consensus pattern (37 bp):
TGCTAAGCATGGGACAAAAATATGTATAAATTACGGT
Found at i:92611855 original size:40 final size:40
Alignment explanation
Indices: 92611761--92611986 Score: 323
Period size: 40 Copynumber: 5.7 Consensus size: 40
92611751 GGATTTAACT
* * **
92611761 GGATATAGCT-ACTCGCTCAAATGTCTTCGGGAC-TAGCTT
1 GGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCC
* *
92611800 GGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
*
92611840 GGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
*
92611880 GGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
92611920 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* *
92611960 GGA-ATTAGTCACTAGCACAAATGCCTT
1 GGATA-TAGTAACTCGCACAAATGCCTT
92611987 TGTTATCATC
Statistics
Matches: 172, Mismatches: 12, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
38 1 0.01
39 29 0.17
40 142 0.83
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
Found at i:92618743 original size:40 final size:40
Alignment explanation
Indices: 92618636--92618839 Score: 263
Period size: 40 Copynumber: 5.2 Consensus size: 40
92618626 AAACCAAGTA
* * *
92618636 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
92618675 TCTTCGGGAC-CAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
92618714 CCTTCGGAACTTAACCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
92618754 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
92618794 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
92618834 CCTTCG
1 CCTTCG
92618840 TTATCATCCG
Statistics
Matches: 146, Mismatches: 15, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
38 2 0.01
39 38 0.26
40 106 0.73
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:92624488 original size:25 final size:25
Alignment explanation
Indices: 92624413--92624519 Score: 81
Period size: 25 Copynumber: 4.3 Consensus size: 25
92624403 GGTCACTGAT
** *
92624413 TTCAGCTCTTATGAGCTTCCCAATA
1 TTCAGCTCACATGAGCTTCCCATTA
* ** * *
92624438 CTCAGCTTGCATGAGCTTCTCGTTA
1 TTCAGCTCACATGAGCTTCCCATTA
*
92624463 TTTAGCTCACATGAGCTTCCCATTA
1 TTCAGCTCACATGAGCTTCCCATTA
* * * *
92624488 TTCAACTCAGAGGAGCTTACCATT-
1 TTCAGCTCACATGAGCTTCCCATTA
*
92624512 TACAGCTC
1 TTCAGCTC
92624520 GTATGGGCAT
Statistics
Matches: 62, Mismatches: 20, Indels: 1
0.75 0.24 0.01
Matches are distributed among these distances:
24 6 0.10
25 56 0.90
ACGTcount: A:0.23, C:0.28, G:0.15, T:0.34
Consensus pattern (25 bp):
TTCAGCTCACATGAGCTTCCCATTA
Found at i:92631893 original size:33 final size:31
Alignment explanation
Indices: 92631856--92631917 Score: 72
Period size: 33 Copynumber: 1.9 Consensus size: 31
92631846 CCTTGCTAAG
92631856 GAAAATAG-ATGGAGAAAAGAAGAGAAAAAAAAA
1 GAAAA-AGAATGGA-AAAAGAAGA-AAAAAAAAA
*
92631889 GAAAAAGAAATGTAAAAAGAAGAAAAAAA
1 GAAAAAG-AATGGAAAAAGAAGAAAAAAA
92631918 TAGGGTGATT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
32 8 0.31
33 14 0.54
34 4 0.15
ACGTcount: A:0.73, C:0.00, G:0.21, T:0.06
Consensus pattern (31 bp):
GAAAAAGAATGGAAAAAGAAGAAAAAAAAAA
Found at i:92631896 original size:21 final size:21
Alignment explanation
Indices: 92631870--92631915 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
92631860 ATAGATGGAG
92631870 AAAAGAAGA-GAAAAAAAAAGA
1 AAAAGAA-ATGAAAAAAAAAGA
* *
92631891 AAAAGAAATGTAAAAAGAAGA
1 AAAAGAAATGAAAAAAAAAGA
92631912 AAAA
1 AAAA
92631916 AATAGGGTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 21 0.95
ACGTcount: A:0.78, C:0.00, G:0.17, T:0.04
Consensus pattern (21 bp):
AAAAGAAATGAAAAAAAAAGA
Found at i:92635547 original size:27 final size:28
Alignment explanation
Indices: 92635490--92635549 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 28
92635480 CTAAGAACTT
*
92635490 TTTTAAGTTATAAATTATAAATATATTA
1 TTTTAAGTTATAAATTATAAATAAATTA
* *
92635518 TTTT-AGTTATAAATTGT-ATTAAATTA
1 TTTTAAGTTATAAATTATAAATAAATTA
*
92635544 ATTTAA
1 TTTTAA
92635550 AATAATTATA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
26 10 0.37
27 13 0.48
28 4 0.15
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (28 bp):
TTTTAAGTTATAAATTATAAATAAATTA
Found at i:92656277 original size:26 final size:26
Alignment explanation
Indices: 92656239--92656343 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
92656229 TGATACAAAT
* *
92656239 TGATAATGAGTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
92656265 TGATAATGGGTTAGGTAAATGTT---
1 TGATAATGGGTTAGGTAAATGTTCCA
92656288 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
92656314 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
92656340 TGAT
1 TGAT
92656344 GGGAATTTCA
Statistics
Matches: 75, Mismatches: 1, Indels: 6
0.91 0.01 0.07
Matches are distributed among these distances:
23 23 0.31
26 52 0.69
ACGTcount: A:0.31, C:0.05, G:0.27, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:92656310 original size:49 final size:49
Alignment explanation
Indices: 92656238--92656336 Score: 180
Period size: 49 Copynumber: 2.0 Consensus size: 49
92656228 TTGATACAAA
*
92656238 TTGATAATGAGTTAGGTAAATGTTCTATGATAATGGGTTAGGTAAATGT
1 TTGATAATGAGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGT
*
92656287 TTGATAATGGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGT
1 TTGATAATGAGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGT
92656336 T
1 T
92656337 CCATGATGGG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.31, C:0.03, G:0.27, T:0.38
Consensus pattern (49 bp):
TTGATAATGAGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGT
Found at i:92657857 original size:26 final size:26
Alignment explanation
Indices: 92657828--92657880 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
92657818 TTTACAGTTT
*
92657828 TACCCGTAGTAGATAAATT-ACCGAAA
1 TACCCCTAG-AGATAAATTGACCGAAA
* *
92657854 TACCCCTAGAGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
92657880 T
1 T
92657881 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.40, C:0.21, G:0.13, T:0.26
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:92667181 original size:17 final size:17
Alignment explanation
Indices: 92667151--92667183 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
92667141 TAATCAGTGC
92667151 AATCAATTAGCATATAA
1 AATCAATTAGCATATAA
92667168 AATCACATTA-CATATA
1 AATCA-ATTAGCATATA
92667184 GTAACTTGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.52, C:0.15, G:0.03, T:0.30
Consensus pattern (17 bp):
AATCAATTAGCATATAA
Found at i:92667690 original size:34 final size:34
Alignment explanation
Indices: 92667646--92667722 Score: 100
Period size: 34 Copynumber: 2.3 Consensus size: 34
92667636 AAATATGTCG
* * *
92667646 TGCTTGTAACAAAATAAAATAGATACAAATATCA
1 TGCTTATAACAAAACAAAACAGATACAAATATCA
* * *
92667680 TGCTTATAACAGAACAAAACATATACGAATATCA
1 TGCTTATAACAAAACAAAACAGATACAAATATCA
92667714 TGCTTATAA
1 TGCTTATAA
92667723 ACGAATGAGG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.49, C:0.14, G:0.09, T:0.27
Consensus pattern (34 bp):
TGCTTATAACAAAACAAAACAGATACAAATATCA
Found at i:92680402 original size:42 final size:43
Alignment explanation
Indices: 92680355--92680437 Score: 109
Period size: 42 Copynumber: 2.0 Consensus size: 43
92680345 ATGTGTTCTC
92680355 GTGTAAGAC-CATGTCT-GGAATGTTGGCA-TCATATTTGATTTT
1 GTGTAAGACTC-TGTCTGGGAATG-TGGCATTCATATTTGATTTT
* *
92680397 GTGTAAGACTCTGTCTGGGACTGTGGCATTGATATTTGATT
1 GTGTAAGACTCTGTCTGGGAATGTGGCATTCATATTTGATT
92680438 ACATGTAAGT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
42 19 0.53
43 17 0.47
ACGTcount: A:0.22, C:0.12, G:0.27, T:0.40
Consensus pattern (43 bp):
GTGTAAGACTCTGTCTGGGAATGTGGCATTCATATTTGATTTT
Found at i:92680446 original size:43 final size:42
Alignment explanation
Indices: 92680356--92680446 Score: 96
Period size: 43 Copynumber: 2.1 Consensus size: 42
92680346 TGTGTTCTCG
***
92680356 TGTAAGACCATGTCTGGAATGTTGGCATCATATTTGATTTTG
1 TGTAAGACCATGTCTGGAATGTTGGCATCATATTTGATTACA
* *
92680398 TGTAAGACTC-TGTCTGGGACTG-TGGCATTGATATTTGATTACA
1 TGTAAGAC-CATGTCT-GGAATGTTGGCA-TCATATTTGATTACA
92680441 TGTAAG
1 TGTAAG
92680447 TCCACATCTG
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
42 18 0.44
43 23 0.56
ACGTcount: A:0.24, C:0.12, G:0.25, T:0.38
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGAATGTTGGCATCATATTTGATTACA
Found at i:92685100 original size:20 final size:20
Alignment explanation
Indices: 92685075--92685114 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
92685065 TTGCTAAAAG
92685075 ACTACGAGCTTGATATTGAT
1 ACTACGAGCTTGATATTGAT
92685095 ACTACGAGCTTGATATTGAT
1 ACTACGAGCTTGATATTGAT
92685115 TACCATCTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (20 bp):
ACTACGAGCTTGATATTGAT
Found at i:92697595 original size:44 final size:41
Alignment explanation
Indices: 92697545--92697704 Score: 131
Period size: 43 Copynumber: 3.8 Consensus size: 41
92697535 ATATGTGTTC
92697545 TCGTGTAAGACCATGTCTGGGACATTGGCATCAACTTATGATT
1 TCGTGTAAGACCATGTCTGGGACATTGGCATCAA-TT-TGATT
* * * * **
92697588 TATGTGTAAGACCACGTCTAGGACGTTGGCATTGTATTTGATT
1 T-CGTGTAAGACCATGTCTGGGACATTGGCA-TCAATTTGATT
* * *
92697631 TCGTGTAAGACCCTGTCTGGGACAGTGGCATTGATATTTGATT
1 TCGTGTAAGACCATGTCTGGGACATTGGCA-TCA-ATTTGATT
* * * ** *
92697674 ACATGTAAGATCACATCTGGGACGTTGGCAT
1 TCGTGTAAGACCATGTCTGGGACATTGGCAT
92697705 TGTACGAGCT
Statistics
Matches: 93, Mismatches: 21, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
42 27 0.29
43 37 0.40
44 27 0.29
45 2 0.02
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (41 bp):
TCGTGTAAGACCATGTCTGGGACATTGGCATCAATTTGATT
Found at i:92697693 original size:43 final size:41
Alignment explanation
Indices: 92697592--92697708 Score: 137
Period size: 43 Copynumber: 2.8 Consensus size: 41
92697582 ATGATTTATG
* * *
92697592 TGTAAGACCACGTCTAGGACGTTGGCATTGTATTTGATTTCG
1 TGTAAGA-CACGTCTGGGACGTTGGCATTGTATTTGATTACA
*
92697634 TGTAAGACCCTGTCTGGGACAG-TGGCATTGATATTTGATTACA
1 TGTAAGACAC-GTCTGGGAC-GTTGGCATTG-TATTTGATTACA
*
92697677 TGTAAGATCACATCTGGGACGTTGGCATTGTA
1 TGTAAGA-CACGTCTGGGACGTTGGCATTGTA
92697709 CGAGCTTTCC
Statistics
Matches: 64, Mismatches: 6, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
41 2 0.03
42 26 0.41
43 34 0.53
44 2 0.03
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.33
Consensus pattern (41 bp):
TGTAAGACACGTCTGGGACGTTGGCATTGTATTTGATTACA
Found at i:92697903 original size:20 final size:20
Alignment explanation
Indices: 92697878--92697924 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
92697868 AAAATATGCT
*
92697878 ATATGTGTAAATGAAT-TGGA
1 ATATGTG-AAATGAATATGAA
*
92697898 ATATGTGAAATGTATATGAA
1 ATATGTGAAATGAATATGAA
92697918 ATATGTG
1 ATATGTG
92697925 GTTTGAGATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 7 0.29
20 17 0.71
ACGTcount: A:0.40, C:0.00, G:0.23, T:0.36
Consensus pattern (20 bp):
ATATGTGAAATGAATATGAA
Found at i:92698632 original size:12 final size:12
Alignment explanation
Indices: 92698617--92698649 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
92698607 ACGGGCAGGG
92698617 ACACGGGCGCAC
1 ACACGGGCGCAC
92698629 ACACGGGCGCAC
1 ACACGGGCGCAC
*
92698641 ACACAGGCG
1 ACACGGGCG
92698650 TGTGCTAGGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.27, C:0.39, G:0.33, T:0.00
Consensus pattern (12 bp):
ACACGGGCGCAC
Found at i:92708754 original size:25 final size:26
Alignment explanation
Indices: 92708718--92708767 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 26
92708708 TAATACTTAG
92708718 ATTAATAGTATT-TTATTAAT-TTAAT
1 ATTAATAGTATTATT-TTAATATTAAT
92708743 ATTAA-AGTTATTATTTTAATATTAA
1 ATTAATAG-TATTATTTTAATATTAA
92708768 ATTTAATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
24 2 0.09
25 14 0.64
26 6 0.27
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (26 bp):
ATTAATAGTATTATTTTAATATTAAT
Found at i:92708755 original size:20 final size:19
Alignment explanation
Indices: 92708730--92708779 Score: 68
Period size: 20 Copynumber: 2.7 Consensus size: 19
92708720 TAATAGTATT
92708730 TTATTAATTTAATATTAAA
1 TTATTAATTTAATATTAAA
*
92708749 GTTATTATTTTAATATTAAA
1 -TTATTAATTTAATATTAAA
92708769 -T-TTAATTTAAT
1 TTATTAATTTAAT
92708780 GTTTATCTCG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 9 0.32
18 1 0.04
20 18 0.64
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (19 bp):
TTATTAATTTAATATTAAA
Found at i:92708827 original size:62 final size:59
Alignment explanation
Indices: 92708757--92708874 Score: 166
Period size: 62 Copynumber: 1.9 Consensus size: 59
92708747 AAGTTATTAT
* * *
92708757 TTTAATATTAAATTTAATTTAATGTTTATCTCGTAGATAAATATTATATT-ATTTTAATAAGA
1 TTTAATATTAAATTTAATCTAAT-TTTATCT--T-GATAAATATTAGATTAAATTTAATAAGA
92708819 TTTAATATTAAATTTAATCTAATTTTATCTTGATAAATATTAGATTAAATTTAATA
1 TTTAATATTAAATTTAATCTAATTTTATCTTGATAAATATTAGATTAAATTTAATA
92708875 TTAAAGTGAT
Statistics
Matches: 52, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
58 14 0.27
59 9 0.17
61 7 0.13
62 22 0.42
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (59 bp):
TTTAATATTAAATTTAATCTAATTTTATCTTGATAAATATTAGATTAAATTTAATAAGA
Found at i:92711561 original size:21 final size:21
Alignment explanation
Indices: 92711514--92711555 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
92711504 TCCTCAATCC
92711514 AAATCTGATTTCTTTGGTTCT
1 AAATCTGATTTCTTTGGTTCT
92711535 AAATCTGATTTCTTTGGTTCT
1 AAATCTGATTTCTTTGGTTCT
92711556 TGATCTAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.14, G:0.14, T:0.52
Consensus pattern (21 bp):
AAATCTGATTTCTTTGGTTCT
Found at i:92715145 original size:20 final size:20
Alignment explanation
Indices: 92715122--92715238 Score: 51
Period size: 20 Copynumber: 5.8 Consensus size: 20
92715112 AAGCCACCAG
92715122 TAATGCAGACAAGCTTCCAA
1 TAATGCAGACAAGCTTCCAA
** * *
92715142 TAATGTGGTCAAG-TCACCAA
1 TAATGCAGACAAGCT-TCCAA
* * *
92715162 TAATGCAGATAA-ATTGCCAG
1 TAATGCAGACAAGCTT-CCAA
* *
92715182 TAGTGTAGACAAGCTGT-CAA
1 TAATGCAGACAAGCT-TCCAA
* * * *
92715202 TATTGCAAATAAGCTACCAA
1 TAATGCAGACAAGCTTCCAA
**
92715222 TAATATAGACAAGCTTC
1 TAATGCAGACAAGCTTC
92715239 TAGTAATATG
Statistics
Matches: 65, Mismatches: 26, Indels: 12
0.63 0.25 0.12
Matches are distributed among these distances:
19 1 0.02
20 62 0.95
21 1 0.02
22 1 0.02
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.25
Consensus pattern (20 bp):
TAATGCAGACAAGCTTCCAA
Found at i:92715573 original size:37 final size:37
Alignment explanation
Indices: 92715523--92715608 Score: 145
Period size: 37 Copynumber: 2.3 Consensus size: 37
92715513 GAGAATGAGA
* *
92715523 ACAACATGTTTTTCAAATCAGTAATAAACATAACCAT
1 ACAACATGCTTTTCAAATCAGTAATAAACATAACCAC
*
92715560 ACAACATGCTTTTCAAATCAGTAATAAACATTACCAC
1 ACAACATGCTTTTCAAATCAGTAATAAACATAACCAC
92715597 ACAACATGCTTT
1 ACAACATGCTTT
92715609 CACAAAATAG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.43, C:0.22, G:0.06, T:0.29
Consensus pattern (37 bp):
ACAACATGCTTTTCAAATCAGTAATAAACATAACCAC
Found at i:92716339 original size:344 final size:344
Alignment explanation
Indices: 92715712--92716730 Score: 1912
Period size: 344 Copynumber: 3.0 Consensus size: 344
92715702 CATAAATCAA
92715712 GCATTAGACCCACACCTGATAGTAAATCCGGTGTGAAACTCCACTCTAAAGAATGTCTACACTCA
1 GCATTAGACCCACACCTGATAGTAAATCCGGTGTGAAACTCCACTCTAAAGAATGTCTACACTCA
*
92715777 AATCTTAGCTAATGGAATACCGATCTGTTATCAAGGTGACTTTTTATTAATTAATAGTCTTTAAA
66 AATCTTAGCTAATGGAATACCGATCTGTTATCAAGGTGACTTTTTATTAATGAATAGTCTTTAAA
*
92715842 TACTTTTTGTGATTAATCACCTAATTTAAATCATCCATTTAGAACTTAATCTTATAAATAATCAC
131 TACTTTTTGTGATTAATCACTTAATTTAAATCATCCATTTAGAACTTAATCTTATAAATAATCAC
92715907 CCGTACAATGGTTTCATTCCCAAAACTAGGAGCTTTTTGGAATGGTCTCGATCGACCCTTCATTA
196 CCGTACAATGGTTTCATTCCCAAAACTAGGAGCTTTTTGGAATGGTCTCGATCGACCCTTCATTA
92715972 AAAATAGAGTATGATATGTTAATACACGAGGAAAAATACATTATAAGTCTTTGTAGACATTCGAT
261 AAAATAGAGTATGATATGTTAATACACGAGGAAAAATACATTATAAGTCTTTGTAGACATTCGAT
92716037 TAAAAGATATATATAACTT
326 TAAAAGATATATATAACTT
*
92716056 GCATTAGAACCACACCTGATAGTAAATCCGGTGTGAAACTCCACTCTAAAGAATGTCTACACTCA
1 GCATTAGACCCACACCTGATAGTAAATCCGGTGTGAAACTCCACTCTAAAGAATGTCTACACTCA
92716121 AATCTTAGCTAATGGAATACCGATCTGTTATCAAGGTGACTTTTTATTAATGAATAGTCTTTAAA
66 AATCTTAGCTAATGGAATACCGATCTGTTATCAAGGTGACTTTTTATTAATGAATAGTCTTTAAA
*
92716186 TACTTTTTGTGATTAATCAATTAATTTAAATCATCCATTTAGAACTTAATCTTATAAATAATCAC
131 TACTTTTTGTGATTAATCACTTAATTTAAATCATCCATTTAGAACTTAATCTTATAAATAATCAC
* *
92716251 TCGTACAATGGTTTCATTCCCAAAACTAGGAGCTTTTTGGAATGGTCTCAATCGACCCTTCATTA
196 CCGTACAATGGTTTCATTCCCAAAACTAGGAGCTTTTTGGAATGGTCTCGATCGACCCTTCATTA
*
92716316 AAAATAGAGTATGATATGTTAATACACAAGGAAAAATACATTATAAGTCTTTGTAGACATTCGAT
261 AAAATAGAGTATGATATGTTAATACACGAGGAAAAATACATTATAAGTCTTTGTAGACATTCGAT
92716381 TAAAAGATATATATAACTT
326 TAAAAGATATATATAACTT
* * *
92716400 GTATTAGACCCACACCTGATAGTAAATTCGGTGTGAAACTCCACTCTAAAGAATATCTACACTCA
1 GCATTAGACCCACACCTGATAGTAAATCCGGTGTGAAACTCCACTCTAAAGAATGTCTACACTCA
*
92716465 AATCTTAGCTAATGGAATACTGATCTGTTATCAAGGTGACTTTTTATTAATGAATAGTCTTTAAA
66 AATCTTAGCTAATGGAATACCGATCTGTTATCAAGGTGACTTTTTATTAATGAATAGTCTTTAAA
* *
92716530 TACTTTTTGTGATTAATCACTTAATTTAAATCATCCGTTTAGAAATTAATCTTATAAATAATCAC
131 TACTTTTTGTGATTAATCACTTAATTTAAATCATCCATTTAGAACTTAATCTTATAAATAATCAC
*
92716595 CCGTACAATGGTTTCATTCCCAAAACTAGGAGCTTTTTAGAATGGTCTCGATCGACCCTTCATTA
196 CCGTACAATGGTTTCATTCCCAAAACTAGGAGCTTTTTGGAATGGTCTCGATCGACCCTTCATTA
92716660 AAAATAGAGTATGATATGTTAATACACGAGGAAAAATACATTATAAGTCTTTGTAGACATTCGAT
261 AAAATAGAGTATGATATGTTAATACACGAGGAAAAATACATTATAAGTCTTTGTAGACATTCGAT
92716725 TAAAAG
326 TAAAAG
92716731 GAAAAGGTAG
Statistics
Matches: 656, Mismatches: 19, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
344 656 1.00
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (344 bp):
GCATTAGACCCACACCTGATAGTAAATCCGGTGTGAAACTCCACTCTAAAGAATGTCTACACTCA
AATCTTAGCTAATGGAATACCGATCTGTTATCAAGGTGACTTTTTATTAATGAATAGTCTTTAAA
TACTTTTTGTGATTAATCACTTAATTTAAATCATCCATTTAGAACTTAATCTTATAAATAATCAC
CCGTACAATGGTTTCATTCCCAAAACTAGGAGCTTTTTGGAATGGTCTCGATCGACCCTTCATTA
AAAATAGAGTATGATATGTTAATACACGAGGAAAAATACATTATAAGTCTTTGTAGACATTCGAT
TAAAAGATATATATAACTT
Found at i:92723785 original size:11 final size:11
Alignment explanation
Indices: 92723771--92723798 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
92723761 AAGGAACAAG
92723771 AAACAGGCCAA
1 AAACAGGCCAA
92723782 AAACAGGCCAA
1 AAACAGGCCAA
92723793 AAACAG
1 AAACAG
92723799 AGAAAATGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.57, C:0.25, G:0.18, T:0.00
Consensus pattern (11 bp):
AAACAGGCCAA
Found at i:92728209 original size:55 final size:53
Alignment explanation
Indices: 92728071--92728210 Score: 127
Period size: 55 Copynumber: 2.5 Consensus size: 53
92728061 TGCGATATGG
* * * * * * *
92728071 CTGTGGTCGAGCCTGCCAAAACAATACGAGCGTGCGACACGCCCGTGTGGAAGA
1 CTGTGGTCGAACCTG-AAAAATAACACGGGCGTGCGACACGCCCGTGTCGAACA
* * * *
92728125 CTCGTGGTTGAAACTGAAAAACTAGCACGGGCGTGCGACACGCCCGTGTCTAACA
1 CT-GTGGTCGAACCTGAAAAA-TAACACGGGCGTGCGACACGCCCGTGTCGAACA
*
92728180 CCTGTGGTCGAACCTGTTAAAATAACACGGG
1 -CTGTGGTCGAACCTG-AAAAATAACACGGG
92728211 TGTGGGGCTT
Statistics
Matches: 67, Mismatches: 15, Indels: 7
0.75 0.17 0.08
Matches are distributed among these distances:
54 6 0.09
55 55 0.82
56 6 0.09
ACGTcount: A:0.27, C:0.26, G:0.29, T:0.18
Consensus pattern (53 bp):
CTGTGGTCGAACCTGAAAAATAACACGGGCGTGCGACACGCCCGTGTCGAACA
Found at i:92729796 original size:49 final size:49
Alignment explanation
Indices: 92729739--92729838 Score: 173
Period size: 49 Copynumber: 2.0 Consensus size: 49
92729729 GCCGTGTGTG
92729739 ACACACGGCCATGCGACACAGTCCCCTGTAGGTCTTTAAAGGTTACATT
1 ACACACGGCCATGCGACACAGTCCCCTGTAGGTCTTTAAAGGTTACATT
* * *
92729788 ACACACGGCCATGCGGCACGGTTCCCTGTAGGTCTTTAAAGGTTACATT
1 ACACACGGCCATGCGACACAGTCCCCTGTAGGTCTTTAAAGGTTACATT
92729837 AC
1 AC
92729839 GAGAGTTACA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (49 bp):
ACACACGGCCATGCGACACAGTCCCCTGTAGGTCTTTAAAGGTTACATT
Found at i:92733136 original size:46 final size:46
Alignment explanation
Indices: 92733086--92733310 Score: 163
Period size: 46 Copynumber: 4.8 Consensus size: 46
92733076 TGTTTGGGCA
*
92733086 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * * * *
92733132 TCCGAACTCGTTGAGTTGAGTCCAAGTT--C-GA-GAGATGTACTAGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCA-AATG
*
92733176 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * * * * *
92733224 CCCGAGCCCACTT-ATGGATGCGAATGCCCGAGCTCACTTATGGATGCGAATG
1 TCCGAGCTC-GTTGA--G-T-TG-A-GTCCGAGTTCACTTATGGATGCAAATG
* *
92733276 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTAT
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTAT
92733311 AGGTGGGTTA
Statistics
Matches: 139, Mismatches: 24, Indels: 32
0.71 0.12 0.16
Matches are distributed among these distances:
42 1 0.01
43 6 0.04
44 3 0.02
46 74 0.53
47 3 0.02
48 5 0.04
49 7 0.05
50 3 0.02
51 3 0.02
52 34 0.24
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:92733283 original size:26 final size:26
Alignment explanation
Indices: 92733199--92733284 Score: 154
Period size: 26 Copynumber: 3.3 Consensus size: 26
92733189 TGAGTTGAGT
*
92733199 CCGAGTTCACTTATGGATGCGAATGC
1 CCGAGCTCACTTATGGATGCGAATGC
*
92733225 CCGAGCCCACTTATGGATGCGAATGC
1 CCGAGCTCACTTATGGATGCGAATGC
92733251 CCGAGCTCACTTATGGATGCGAATGC
1 CCGAGCTCACTTATGGATGCGAATGC
92733277 CCGAGCTC
1 CCGAGCTC
92733285 GTTGAGTTGA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 57 1.00
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (26 bp):
CCGAGCTCACTTATGGATGCGAATGC
Found at i:92736015 original size:50 final size:51
Alignment explanation
Indices: 92735958--92736056 Score: 137
Period size: 50 Copynumber: 2.0 Consensus size: 51
92735948 AAATGAAAGG
* * *
92735958 ACCATATCGTGTAAGACCGTAACTAGTGAGCTATGGCGTCATAT-GGAAAC
1 ACCATATCGTATAAGACCATAACTAGTGAGCTATGGCATCATATAGGAAAC
* * *
92736008 ACCATATCTTATAAGACCATAACTAGTGGGTTATGGCATCATATAGGAA
1 ACCATATCGTATAAGACCATAACTAGTGAGCTATGGCATCATATAGGAA
92736057 GAACTAAAGG
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
50 38 0.90
51 4 0.10
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.26
Consensus pattern (51 bp):
ACCATATCGTATAAGACCATAACTAGTGAGCTATGGCATCATATAGGAAAC
Found at i:92736228 original size:26 final size:26
Alignment explanation
Indices: 92736167--92736239 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
92736157 ACATGTCAGA
*
92736167 AAATGGAAGCCTTTGTGGCCATCTATG
1 AAATGGAAGCCTTTGTGG-CATATATG
* *
92736194 AAATGGAAGTCTTTGTGGCATATCTG
1 AAATGGAAGCCTTTGTGGCATATATG
*
92736220 AAATGGAAGCCTCTGTGGCA
1 AAATGGAAGCCTTTGTGGCA
92736240 GTCTGTGAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
26 24 0.59
27 17 0.41
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
AAATGGAAGCCTTTGTGGCATATATG
Found at i:92737636 original size:20 final size:20
Alignment explanation
Indices: 92737613--92737674 Score: 61
Period size: 20 Copynumber: 3.1 Consensus size: 20
92737603 GACAACATGA
*
92737613 CAGTATTGTGGACAAGCCAC
1 CAGTAATGTGGACAAGCCAC
* * ****
92737633 CAGTAATGTAGATAAATTGC
1 CAGTAATGTGGACAAGCCAC
92737653 CAGTAATGTGGACAAGCCAC
1 CAGTAATGTGGACAAGCCAC
92737673 CA
1 CA
92737675 AAATTTTAAT
Statistics
Matches: 29, Mismatches: 13, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (20 bp):
CAGTAATGTGGACAAGCCAC
Found at i:92737811 original size:38 final size:38
Alignment explanation
Indices: 92737769--92737852 Score: 107
Period size: 38 Copynumber: 2.2 Consensus size: 38
92737759 AATAATAGGG
* * *
92737769 TAGGCATGATTGAAACATTTAATCAGTAGCAGAAACAA
1 TAGGCATGATTGAAACATTCAATCAGCAACAGAAACAA
* * *
92737807 TAGGCATGATTTAAACATTCGATCAGCAACAGAAACAG
1 TAGGCATGATTGAAACATTCAATCAGCAACAGAAACAA
92737845 T-GGCATGA
1 TAGGCATGA
92737853 ATTATCATGC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
37 7 0.17
38 33 0.82
ACGTcount: A:0.42, C:0.15, G:0.20, T:0.23
Consensus pattern (38 bp):
TAGGCATGATTGAAACATTCAATCAGCAACAGAAACAA
Found at i:92742405 original size:29 final size:29
Alignment explanation
Indices: 92742363--92742420 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
92742353 AATACCAATG
92742363 TTAGTTTCAATTTTATAGCCCAAAGTAAT
1 TTAGTTTCAATTTTATAGCCCAAAGTAAT
92742392 TTAGTTTCAATTTTATAGCCCAAAGTAAT
1 TTAGTTTCAATTTTATAGCCCAAAGTAAT
92742421 CATCTTATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.14, G:0.10, T:0.41
Consensus pattern (29 bp):
TTAGTTTCAATTTTATAGCCCAAAGTAAT
Found at i:92747030 original size:16 final size:16
Alignment explanation
Indices: 92747005--92747036 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
92746995 TTATTTTTCA
92747005 ATTTCATTTATAAAAT
1 ATTTCATTTATAAAAT
*
92747021 ATTTCCTTTATAAAAT
1 ATTTCATTTATAAAAT
92747037 TCTTGAGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (16 bp):
ATTTCATTTATAAAAT
Found at i:92747721 original size:32 final size:33
Alignment explanation
Indices: 92747680--92747742 Score: 110
Period size: 32 Copynumber: 1.9 Consensus size: 33
92747670 TAGAAAATGA
*
92747680 CCTAGGTTGAATTCAAGCTTTAAA-GCTCAAGC
1 CCTAGGTTGAATTCAAGCCTTAAATGCTCAAGC
92747712 CCTAGGTTGAATTCAAGCCTTAAATGCTCAA
1 CCTAGGTTGAATTCAAGCCTTAAATGCTCAA
92747743 ACCCGTGCCC
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 23 0.79
33 6 0.21
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (33 bp):
CCTAGGTTGAATTCAAGCCTTAAATGCTCAAGC
Found at i:92754123 original size:49 final size:49
Alignment explanation
Indices: 92754067--92754856 Score: 1203
Period size: 49 Copynumber: 16.6 Consensus size: 49
92754057 TATTTGAATA
*
92754067 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
92754116 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
92754165 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
92754214 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
92754263 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
92754310 AATGTGAAAGTGTATATATATGTGATAAGGTCGAATGGCCAATCTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
92754359 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
92754406 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
92754455 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
92754504 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
92754553 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCC---------
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
92754591 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
92754640 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
92754689 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
92754736 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
92754783 AATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
92754830 GATGTGAAAGTGTACA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
92754857 TCCCGAAGGG
Statistics
Matches: 694, Mismatches: 30, Indels: 36
0.91 0.04 0.05
Matches are distributed among these distances:
38 12 0.02
40 26 0.04
47 255 0.37
48 1 0.00
49 400 0.58
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:92754306 original size:96 final size:96
Alignment explanation
Indices: 92754067--92754856 Score: 1192
Period size: 96 Copynumber: 8.3 Consensus size: 96
92754057 TATTTGAATA
*
92754067 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
92754132 TATATGTGATAAGGCCGAATGGCCAATGTGATG
64 TATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
92754165 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
* *
92754230 TATATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATATGTGATAAGGCCGAATGGCCAATGTGATG
92754263 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* *
92754328 TATGTGATAAGGTCGAATGGCCAATCTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
92754359 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* *
92754424 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
92754455 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
* *
92754520 TATATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATATGTGATAAGGCCGAATGGCCAATGTGATG
92754553 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC---------AATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
92754609 TATGTGATAAGGCCGAATGGCCAATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
92754640 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
* * *
92754703 TATATGTGATAAGGCCTAATAGCCGATGTGATG
64 TATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
92754736 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * * *
92754799 TATGTGACAGGGCCGAGTGGCCAACGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
92754830 GATGTGAAAGTGTACAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
92754857 TCCCGAAGGG
Statistics
Matches: 650, Mismatches: 29, Indels: 30
0.92 0.04 0.04
Matches are distributed among these distances:
87 59 0.09
89 25 0.04
94 99 0.15
96 252 0.39
98 215 0.33
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:92754638 original size:22 final size:22
Alignment explanation
Indices: 92754570--92754638 Score: 58
Period size: 22 Copynumber: 3.3 Consensus size: 22
92754560 AAGTGTATAT
92754570 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * **
92754592 ATGTGA-AA-G-TGTAT--ATA
1 ATGTGATAAGGCCGAATGGCCA
92754609 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
92754632 ATGTGAT
1 ATGTGAT
92754639 GAATGTGAAA
Statistics
Matches: 33, Mismatches: 8, Indels: 12
0.62 0.15 0.23
Matches are distributed among these distances:
17 1 0.03
18 6 0.18
19 5 0.15
20 2 0.06
21 5 0.15
22 13 0.39
23 1 0.03
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:92761203 original size:18 final size:18
Alignment explanation
Indices: 92761165--92761209 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
92761155 GAGGTTGTGA
* *
92761165 AAGAACCAGTGTGTTTGG
1 AAGAACCAGTGTGTGTAG
*
92761183 AAGAACCTGTGTGTGTAG
1 AAGAACCAGTGTGTGTAG
*
92761201 AAGAGCCAG
1 AAGAACCAG
92761210 ATTTTGTATG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.31, C:0.13, G:0.33, T:0.22
Consensus pattern (18 bp):
AAGAACCAGTGTGTGTAG
Found at i:92761386 original size:18 final size:18
Alignment explanation
Indices: 92761365--92761399 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
92761355 GGTTGTGAAA
*
92761365 GAACCTGTGTGTTTAGAG
1 GAACCTGTGTGTGTAGAG
*
92761383 GAACTTGTGTGTGTAGA
1 GAACCTGTGTGTGTAGA
92761400 AGAGCCAGAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.09, G:0.34, T:0.34
Consensus pattern (18 bp):
GAACCTGTGTGTGTAGAG
Found at i:92761489 original size:198 final size:198
Alignment explanation
Indices: 92761151--92762115 Score: 627
Period size: 198 Copynumber: 4.9 Consensus size: 198
92761141 TGGAAGAGTG
*
92761151 ACCAGAGGTTGTGAAAGAACCAGTGTGTTTGGAAGAACCTGTGTGTGTAGAAGAGCCAGATTTTG
1 ACCAGAGGTTGTGAAAGAACCAGTGTGTTTAGAAGAACCTGTGTGTGTAGAAGAGCCAGATTTTG
* * *
92761216 TATGAGTAGAAGTCGTGTGACTATTACTGTTATGAGAAGTAGAACCTAAAGAGTGGCTCGAAATA
66 TATGAGCAGAAGTCGTGTGACTATTACTCTTATGAGAACTAGAACCTAAAGAGTGGCTCGAAATA
*
92761281 GAACCAGTAGTTGTATGGCCACCAATCGTAGCAGCACCAGTGTTTGTGGAAGAGCCCGAAATTTT
131 GAACCAGTAGTTGTATGGCCACCAATCGTAGCAGAACCAGTGTTTGTGGAAGAGCCCGAAATTTT
92761346 AGA
196 AGA
* * *
92761349 ACCAGAGGTTGTGAAAGAACCTGTGTGTTTAGAGGAACTTGTGTGTGTAGAAGAGCCAGATTTTG
1 ACCAGAGGTTGTGAAAGAACCAGTGTGTTTAGAAGAACCTGTGTGTGTAGAAGAGCCAGATTTTG
* * *
92761414 TATGAGCAGATGTCGTGTGACTATTAGTCTTATGAGAACTAGAACCTGAAGAGTGGCTCGAAATA
66 TATGAGCAGAAGTCGTGTGACTATTACTCTTATGAGAACTAGAACCTAAAGAGTGGCTCGAAATA
* * * * * * * ** *
92761479 GAACCAGTAGTTGTATGGCCATCAGTTGTAGCAGAACCAGTGTGAT-TGGAAGAGTCGGTAGGTG
131 GAACCAGTAGTTGTATGGCCACCAATCGTAGCAGAACCAGTGT-TTGTGGAAGAGCCCGAAATTT
92761543 T-G-
195 TAGA
* * * * * * * * * ** **
92761545 --CA-A----GTGCAAGAGCAAG-AT-TTT-GCAGGAGCAGAAGTGTCGT-GACTA-TTAG-TCT
1 ACCAGAGGTTGTGAAAGAACCAGTGTGTTTAGAAGAACCTG-TGTGT-GTAGAAGAGCCAGAT-T
* ** * * * ** ** * *** **
92761597 TATG-A-GAACTAGAACCTGAAGAGTGGCT-TGA--AATA-GAACTAGTAG-TTTTATGGGCA-T
63 T-TGTATGAGC-AGAA---GTCGTGTGACTATTACTCTTATG-AGAACTAGAACCTA-AAG-AGT
*** ** * * ** * * * *
92761654 CAATC-ATAGCAGGACCAGTAGTTGCATGGCCATTAGTCGTAGTAGAACCAGGGCTTGTGGAAGA
120 GGCTCGA-AATAGAACCAGTAGTTGTATGGCCACCAATCGTAGCAGAACCAGTGTTTGTGGAAGA
** * *
92761718 GCTTGAAGTTTTGGA
184 GCCCGAAATTTTAGA
* * *
92761733 ACCAGATGTTGTGAAAGAACCAGTGTGTTTGGAAGAACCTGTGTGTGTAGAAGAGCCTGATTTTG
1 ACCAGAGGTTGTGAAAGAACCAGTGTGTTTAGAAGAACCTGTGTGTGTAGAAGAGCCAGATTTTG
* * * * * * *
92761798 TATGACCAAAACTCATGTGACTATTAGTCTTATGAGAACTAGAACCTGAAGAGTGGCTCAAAATA
66 TATGAGCAGAAGTCGTGTGACTATTACTCTTATGAGAACTAGAACCTAAAGAGTGGCTCGAAATA
* * * * * * * * *
92761863 GAACCAGTAGTTGTATTGCCATCAGTCGTAGCGGAACCAATGTTAGTAGAAGAGCCTGAAGTTTT
131 GAACCAGTAGTTGTATGGCCACCAATCGTAGCAGAACCAGTGTTTGTGGAAGAGCCCGAAATTTT
*
92761928 GGA
196 AGA
* * * * * * * * *
92761931 ACCAGATGTTGTCAAAGAACCAGCGTGATTGGAAGAACCGGTGTGTGTGGAAGAACTAGATTTTG
1 ACCAGAGGTTGTGAAAGAACCAGTGTGTTTAGAAGAACCTGTGTGTGTAGAAGAGCCAGATTTTG
* * * * *
92761996 TATGA-CTAGAAGTCATGTGACTATTAGTCTTACGAGAACTAGAACCTGAAGAG-GCACTC-AAA
66 TATGAGC-AGAAGTCGTGTGACTATTACTCTTATGAGAACTAGAACCTAAAGAGTG-GCTCGAAA
* * * * * *
92762058 GTAGAACCGGTAGTTGTATGGCCATCAGTCGAAGTAGAACCAATGTTTGTGGAAGAGC
129 -TAGAACCAGTAGTTGTATGGCCACCAATCGTAGCAGAACCAGTGTTTGTGGAAGAGC
92762116 TTGAAGTTTT
Statistics
Matches: 582, Mismatches: 144, Indels: 82
0.72 0.18 0.10
Matches are distributed among these distances:
185 8 0.01
186 74 0.13
187 14 0.02
188 5 0.01
189 16 0.03
190 2 0.00
191 1 0.00
193 1 0.00
194 2 0.00
195 15 0.03
196 5 0.01
197 19 0.03
198 412 0.71
199 8 0.01
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (198 bp):
ACCAGAGGTTGTGAAAGAACCAGTGTGTTTAGAAGAACCTGTGTGTGTAGAAGAGCCAGATTTTG
TATGAGCAGAAGTCGTGTGACTATTACTCTTATGAGAACTAGAACCTAAAGAGTGGCTCGAAATA
GAACCAGTAGTTGTATGGCCACCAATCGTAGCAGAACCAGTGTTTGTGGAAGAGCCCGAAATTTT
AGA
Found at i:92761785 original size:18 final size:18
Alignment explanation
Indices: 92761747--92761791 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
92761737 GATGTTGTGA
* * *
92761747 AAGAACCAGTGTGTTTGG
1 AAGAACCTGTGTGTGTAG
92761765 AAGAACCTGTGTGTGTAG
1 AAGAACCTGTGTGTGTAG
*
92761783 AAGAGCCTG
1 AAGAACCTG
92761792 ATTTTGTATG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.24
Consensus pattern (18 bp):
AAGAACCTGTGTGTGTAG
Found at i:92762123 original size:198 final size:198
Alignment explanation
Indices: 92761667--92762132 Score: 675
Period size: 198 Copynumber: 2.4 Consensus size: 198
92761657 TCATAGCAGG
* * ** *
92761667 ACCAGTAGTTGCATGGCCATTAGTCGTAGTAGAACCAGGGCTTGTGGAAGAGCTTGAAGTTTTGG
1 ACCAGTAGTTGTATGGCCATCAGTCGTAGTAGAACCAATGTTTGTGGAAGAGCTTGAAGTTTTGG
* * * * *
92761732 AACCAGATGTTGTGAAAGAACCAGTGTGTTTGGAAGAACCTGTGTGTGTAGAAGAGCCTGATTTT
66 AACCAGATGTTGTCAAAGAACCAGCGTGATTGGAAGAACCGGTGTGTGTAGAAGAGACTGATTTT
* *
92761797 GTATGACCAAAACTCATGTGACTATTAGTCTTATGAGAACTAGAACCTGAAGAGTGGCTCAAAAT
131 GTATGACCAAAACTCATGTGACTATTAGTCTTACGAGAACTAGAACCTGAAGAGTGACTCAAAAT
92761862 AGA
196 AGA
* ** * * *
92761865 ACCAGTAGTTGTATTGCCATCAGTCGTAGCGGAACCAATGTTAGTAGAAGAGCCTGAAGTTTTGG
1 ACCAGTAGTTGTATGGCCATCAGTCGTAGTAGAACCAATGTTTGTGGAAGAGCTTGAAGTTTTGG
*
92761930 AACCAGATGTTGTCAAAGAACCAGCGTGATTGGAAGAACCGGTGTGTGTGGAAGA-ACTAGATTT
66 AACCAGATGTTGTCAAAGAACCAGCGTGATTGGAAGAACCGGTGTGTGTAGAAGAGACT-GATTT
* * *
92761994 TGTATGACTAGAAGTCATGTGACTATTAGTCTTACGAGAACTAGAACCTGAAGAG-GCACTCAAA
130 TGTATGACCAAAACTCATGTGACTATTAGTCTTACGAGAACTAGAACCTGAAGAGTG-ACTCAAA
*
92762058 GTAGA
194 ATAGA
* *
92762063 ACCGGTAGTTGTATGGCCATCAGTCGAAGTAGAACCAATGTTTGTGGAAGAGCTTGAAGTTTTGG
1 ACCAGTAGTTGTATGGCCATCAGTCGTAGTAGAACCAATGTTTGTGGAAGAGCTTGAAGTTTTGG
92762128 AACCA
66 AACCA
92762133 AAACTATTGC
Statistics
Matches: 235, Mismatches: 31, Indels: 4
0.87 0.11 0.01
Matches are distributed among these distances:
197 3 0.01
198 232 0.99
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.26
Consensus pattern (198 bp):
ACCAGTAGTTGTATGGCCATCAGTCGTAGTAGAACCAATGTTTGTGGAAGAGCTTGAAGTTTTGG
AACCAGATGTTGTCAAAGAACCAGCGTGATTGGAAGAACCGGTGTGTGTAGAAGAGACTGATTTT
GTATGACCAAAACTCATGTGACTATTAGTCTTACGAGAACTAGAACCTGAAGAGTGACTCAAAAT
AGA
Found at i:92765238 original size:904 final size:899
Alignment explanation
Indices: 92762875--92765341 Score: 4008
Period size: 900 Copynumber: 2.7 Consensus size: 899
92762865 GTTATTGAAG
*
92762875 TACAAGAATGTGAAAAAGAACAAGTAGACAAGTAAAAACCCACAAATTTATTATAAAATATGTAA
1 TACAAGAATGTGAAAAAGAACAAGTAGACAAGTAAAAACCCACAAAATTATTATAAAATATGTAA
* * * *
92762940 AAGCATGTTAAATAAATAAAGTAATACAAAAAAGACAGAAAATTTGAACCTGAAGGGTTACTTGT
66 AAGCATGTTAAATAGATAAAATAATACAAAAAAGATAGAAAATTTAAACCTGAAGGGTTACTTGT
92763005 AGAAGACTTAGATCCGTCAGAACCTAATAAAAAGTCAACATTCATATAATGGTTAAAAACCTTAG
131 AGAAGACTTAGATCCGTCAGAACCTAATAAAAAGTCAACATTCATATAATGGTTAAAAACCTTAG
*
92763070 AATCTTTATAACATTATTAAGAACTCAACATCATAAAATAACCATAAATAGTTGAACTAAATGAC
196 AATCTTTATAACATTATTAAGAACTCAACATCATAAAATAACCATAAATAGTTGAACTAGATGAC
*
92763135 GATCTTGAACTTTTAGCAGGTCCAGCACCTGTGGAAGGGCTCGTAGGAATAAAAGTCGTAGAACC
261 GATCTTGAAGTTTTAGCAGGTCCAGCACCTGTGGAAGGGCTCGTAGGAATAAAAGTCGTAGAACC
* *
92763200 ATTAGTCGTTGAAGCATTGGTACCCATGGAAGCACTTTCATTTTTAGTACTTGAAGCCTTGGAAT
326 ATTAGTCGCTGAAGCATTGGTACCCATGGAAGCACTTTCATTTTTAGTACTTGAAGCCTTAGAAT
* * *
92763265 TACCAGAAACTGATAAAGAATAGATAGATATGTCACGACACACAAAATTTCTAGAACATT-ATTA
391 TACCAGAAACTGATAAAGAATAGATAGATATGTCAAGACCCACAAAATTTCTAAAAC-TTGATTA
* * * * *
92763329 TAAAGTCTATATAAGCATGTTAAATGGATGAAATAAAAGAAAATGATATGGAATCCAAACCTGAA
455 TAAAGTATGTATAAGCATGTCAAATGGATGAAATAATAGAAAATGATAGGGAATCCAAACCTGAA
*
92763394 GAGTCA-TTCGTAGAAGACTTAGATCCTTCAGAACCTAATAAAAAGTCAAAAGTCATATAAATGT
520 GAGTCACTT-GTAGAAGACTTAGATCCTTCAGAACCTAATAAAAA-TTAAAAGTCATATAAATGT
*
92763458 TAAAAAATTTAGAATCATTATAACCTTATAAAAAACCCAACATCATAAAATAACCAAAAATAGTT
583 TAAAAAA-TTAGAATCGTTATAACCTTATAAAAAACCCAACATCATAAAATAACCAAAAATAGTT
* *
92763523 GAACCTAATGAGGAGCCTGAAGCTTTAAAACTAGAACCATGACTTGCGGAAGAGCGACCAAAAGC
647 GAACCTAATGAGGAGCCTAAAGCTTTAAAACCAGAACCATGACTTGCGGAAGAGCGACCAAAAGC
*
92763588 TGTAAACGAACTAAAGTGAGCAAAATTGCTTGAACTTGTATAACCAAATCCCTTATGGCTATTAG
712 TGTAAACGAACCAAAGTGAGCAAAATTGCTTGAACTTGTATAACCAAATCCCTTATGGCTATTAG
* *
92763653 TTGTGAAAGAACTAACACCTGTGGAAGGGCTTGAAGAAGGAGTAGAAGCTGTAGGACCATTTGTC
777 TTATGAAAGAACTAACACCTGTGGAAGGGCTAGAAGAAGGAGTAGAAGCTGTAGGACCATTTGTC
* * * * *
92763718 ACTGAAGTACTAGTGCCTGTGGAAGCATCTATATCTTTAGTACTAGTTTCTTTAGAAT
842 ACTGAAGTACTAGCGCCTGTGAAAGCACCCATATCTTTAGTACTAGTTGCTTTAGAAT
* *
92763776 TACAAGAATGTGAAAAAGAACAAGTATACAAGTAAAAACTCACAAAATTATTATAAAATATGTAA
1 TACAAGAATGTGAAAAAGAACAAGTAGACAAGTAAAAACCCACAAAATTATTATAAAATATGTAA
*
92763841 AAGCATGTTAAATAGATAAAATAATACAAAAAAGATAGAAAATTTAAACCTGAAGGGTTACTTAT
66 AAGCATGTTAAATAGATAAAATAATACAAAAAAGATAGAAAATTTAAACCTGAAGGGTTACTTGT
* * *
92763906 TGAAGACATAGATCCGTCAGAACCTAATAAAAAGTCAACATTCA-ATAATGGTTAAAAACCTTAA
131 AGAAGACTTAGATCCGTCAGAACCTAATAAAAAGTCAACATTCATATAATGGTTAAAAACCTTAG
*
92763970 AATCATTATAACATTATTAAGAACTCAACATCATAAAATAACCATAAATAGTTGAACTAGATGAC
196 AATCTTTATAACATTATTAAGAACTCAACATCATAAAATAACCATAAATAGTTGAACTAGATGAC
* * * * *
92764035 AATCATGAAGTTTTAGCATGTTCAGCACCTGTGGAAGGGTTCGTAGGAATAAAAGTCGTAGAACC
261 GATCTTGAAGTTTTAGCAGGTCCAGCACCTGTGGAAGGGCTCGTAGGAATAAAAGTCGTAGAACC
* *
92764100 ATTAGTCGCTGAAGCATTGGAACCCATGGAAGCACTTTCATTTTTAGTACTTGAAGCCTTTGAAT
326 ATTAGTCGCTGAAGCATTGGTACCCATGGAAGCACTTTCATTTTTAGTACTTGAAGCCTTAGAAT
* *
92764165 TACCAGAAACTGATAAAGAATAGATAGATATATCAAGACCCACAAAATTTCTAAAACTTGATCAT
391 TACCAGAAACTGATAAAGAATAGATAGATATGTCAAGACCCACAAAATTTCTAAAACTTGATTAT
* * *
92764230 AAAGTATGAATAAGCATGTCAAATGGATGAAATAATAGAAAATGATAGGGAATCCAAACCCGAGG
456 AAAGTATGTATAAGCATGTCAAATGGATGAAATAATAGAAAATGATAGGGAATCCAAACCTGAAG
** * * *
92764295 AGTCACTTGTAGCGGTCTTAGACCCTTCAGAACCTAATAAAAATTTAAAAGTCATATATATGTTA
521 AGTCACTTGTAGAAGACTTAGATCCTTCAGAACCTAATAAAAA-TTAAAAGTCATATAAATGTTA
* * *
92764360 AAAACATTAGAATTGCTGTAACCTTATAAAAAAACCCCAACATCATAAAATAACCAAAAATAGTT
585 AAAA-ATTAGAATCGTTATAACCTTAT-AAAAAA-CCCAACATCATAAAATAACCAAAAATAGTT
* * * *
92764425 GAACCTGATGAGGAGCCTAAAGCTTTAAAACCAGAACTATGACTTGCGGAAGAGTGACCAGAAGC
647 GAACCTAATGAGGAGCCTAAAGCTTTAAAACCAGAACCATGACTTGCGGAAGAGCGACCAAAAGC
* * *
92764490 TGTAAACGAACCAGAGTGAGCAAAATTGCTTGAACTTGTATGACCAGATCCCTTATGGCTATTAG
712 TGTAAACGAACCAAAGTGAGCAAAATTGCTTGAACTTGTATAACCAAATCCCTTATGGCTATTAG
* *
92764555 TTATGAAAGAATTAACGCCTGTGGAAGGGCTAGAAGAAGGAGTAGAAGCTGTAGGACCATTTGTC
777 TTATGAAAGAACTAACACCTGTGGAAGGGCTAGAAGAAGGAGTAGAAGCTGTAGGACCATTTGTC
**
92764620 ACTGTTGTACTAGCGCCTGTGAAAGCACCCATATCTTTAGTACTAGTTGCTTTAGAAT
842 ACTGAAGTACTAGCGCCTGTGAAAGCACCCATATCTTTAGTACTAGTTGCTTTAGAAT
** * *
92764678 TGTAAGAATGTGAAAAAGAACAACTAGACAAGTCAAAACCCACAAAATTATTATAAAATATGTAA
1 TACAAGAATGTGAAAAAGAACAAGTAGACAAGTAAAAACCCACAAAATTATTATAAAATATGTAA
*
92764743 AAGCATGTTAAATAGATAAAACAATACAAAAAAAGATAGAAAATTTAAACCTGAAGGGTTACTTG
66 AAGCATGTTAAATAGATAAAATAATAC-AAAAAAGATAGAAAATTTAAACCTGAAGGGTTACTTG
*
92764808 TAGAAGACTTAGGTCCGTCAGAACCTAATAAAAAGTCAACATTCATATAATGGTTAAAAACCTTA
130 TAGAAGACTTAGATCCGTCAGAACCTAATAAAAAGTCAACATTCATATAATGGTTAAAAACCTTA
*
92764873 GAATCTTTATAACATTATTAAGAACTCAACATCATAAAATAACCATAAATAGTTGAACTAGTTGA
195 GAATCTTTATAACATTATTAAGAACTCAACATCATAAAATAACCATAAATAGTTGAACTAGATGA
*
92764938 CGATCTTGAAGTTTTAGCAGGTCCAGCACCTGGGGAAGGGCTCGTAGGAATAAAAGTCGTAGAAC
260 CGATCTTGAAGTTTTAGCAGGTCCAGCACCTGTGGAAGGGCTCGTAGGAATAAAAGTCGTAGAAC
*
92765003 CATTAGTCGCTGAAGCATTGGTA-CCAGTGGAAGCACTTTCATTTTTAGCACTTGAAGCCTTAGA
325 CATTAGTCGCTGAAGCATTGGTACCCA-TGGAAGCACTTTCATTTTTAGTACTTGAAGCCTTAGA
* *
92765067 ATTACCAGAAACTAATAAAGAATAGATAGATATGTCAAGACCCACAAAATTTATAAAACTTGATT
389 ATTACCAGAAACTGATAAAGAATAGATAGATATGTCAAGACCCACAAAATTTCTAAAACTTGATT
92765132 ATAAAGTATGTATAAGCATGTCAAAT-GAGTGAAATAATAGAAAATGATAGGGAATCCAAACCTG
454 ATAAAGTATGTATAAGCATGTCAAATGGA-TGAAATAATAGAAAATGATAGGGAATCCAAACCTG
* * *
92765196 AAAAGTCACTTGTAGAAGACTTAGATCCTTCAGAACCTAATAAAAAGTCAAAGTCATATAAATGT
518 AAGAGTCACTTGTAGAAGACTTAGATCCTTCAGAACCTAATAAAAATTAAAAGTCATATAAATGT
* * * *
92765261 TAAAATATTTAAAATGGTTATAACCTTATAAAAAACCCAACATCATAAAATAACCAAAAATATTT
583 TAAAA-AATTAGAATCGTTATAACCTTATAAAAAACCCAACATCATAAAATAACCAAAAATAGTT
* *
92765326 AAACCTAATGATGAGC
647 GAACCTAATGAGGAGC
92765342 TTGATGCTTT
Statistics
Matches: 1442, Mismatches: 114, Indels: 20
0.91 0.07 0.01
Matches are distributed among these distances:
899 2 0.00
900 393 0.27
901 215 0.15
902 353 0.24
903 121 0.08
904 358 0.25
ACGTcount: A:0.42, C:0.15, G:0.17, T:0.26
Consensus pattern (899 bp):
TACAAGAATGTGAAAAAGAACAAGTAGACAAGTAAAAACCCACAAAATTATTATAAAATATGTAA
AAGCATGTTAAATAGATAAAATAATACAAAAAAGATAGAAAATTTAAACCTGAAGGGTTACTTGT
AGAAGACTTAGATCCGTCAGAACCTAATAAAAAGTCAACATTCATATAATGGTTAAAAACCTTAG
AATCTTTATAACATTATTAAGAACTCAACATCATAAAATAACCATAAATAGTTGAACTAGATGAC
GATCTTGAAGTTTTAGCAGGTCCAGCACCTGTGGAAGGGCTCGTAGGAATAAAAGTCGTAGAACC
ATTAGTCGCTGAAGCATTGGTACCCATGGAAGCACTTTCATTTTTAGTACTTGAAGCCTTAGAAT
TACCAGAAACTGATAAAGAATAGATAGATATGTCAAGACCCACAAAATTTCTAAAACTTGATTAT
AAAGTATGTATAAGCATGTCAAATGGATGAAATAATAGAAAATGATAGGGAATCCAAACCTGAAG
AGTCACTTGTAGAAGACTTAGATCCTTCAGAACCTAATAAAAATTAAAAGTCATATAAATGTTAA
AAAATTAGAATCGTTATAACCTTATAAAAAACCCAACATCATAAAATAACCAAAAATAGTTGAAC
CTAATGAGGAGCCTAAAGCTTTAAAACCAGAACCATGACTTGCGGAAGAGCGACCAAAAGCTGTA
AACGAACCAAAGTGAGCAAAATTGCTTGAACTTGTATAACCAAATCCCTTATGGCTATTAGTTAT
GAAAGAACTAACACCTGTGGAAGGGCTAGAAGAAGGAGTAGAAGCTGTAGGACCATTTGTCACTG
AAGTACTAGCGCCTGTGAAAGCACCCATATCTTTAGTACTAGTTGCTTTAGAAT
Found at i:92766050 original size:18 final size:18
Alignment explanation
Indices: 92766027--92766062 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
92766017 GATTGTGAAG
92766027 TTTGAGAAGAATCAGAAC
1 TTTGAGAAGAATCAGAAC
**
92766045 TTTGAGAATTATCAGAAC
1 TTTGAGAAGAATCAGAAC
92766063 CAAATCCTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.42, C:0.11, G:0.19, T:0.28
Consensus pattern (18 bp):
TTTGAGAAGAATCAGAAC
Found at i:92767115 original size:18 final size:18
Alignment explanation
Indices: 92767076--92767131 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
92767066 AGCAGTAGTA
* *
92767076 GAACCAGAATGCTTAA-AA
1 GAACCAGAATG-TGAAGAT
92767094 GAACCAGAATGTGAAGAT
1 GAACCAGAATGTGAAGAT
* * *
92767112 GAACTAGAATTTGAGGAT
1 GAACCAGAATGTGAAGAT
92767130 GA
1 GA
92767132 GCCCGAAGCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
17 3 0.09
18 29 0.91
ACGTcount: A:0.45, C:0.11, G:0.25, T:0.20
Consensus pattern (18 bp):
GAACCAGAATGTGAAGAT
Found at i:92767304 original size:210 final size:209
Alignment explanation
Indices: 92766921--92767890 Score: 888
Period size: 210 Copynumber: 4.8 Consensus size: 209
92766911 TGTGATGACA
* ** * * *
92766921 AGCCAGAAGCCTTAGAATCACTAGAACCTGACAAAGAACCAGAACTTGTAAAGGAACCAGAAGCC
1 AGCCAGAAGCCTTATAATTGCTAGAACCTGATAAAGAACCAGAACTTGTAGAGGAACTAGAAGCC
* * *
92766986 TCATG-TTCTAAAGAAGACTTAGAAGCCGTAGTAGGA-CTAGAATCCTTAGAATTGTTCA-AACC
66 TCATGATT-TAATGAAGACTGAGAAGCCGTAGTAGAATC-AGAATCCTTAGAATTGTT-AGAACC
* * * * *
92767048 -AGAATTTATGGATAAGTTAGCAGTAGTAGAACCAGAATGCTTAAAAGAACCAGAATGTGAAGAT
128 TA-AGTTTGTGGATGAGTTAGCAGCA-TAGAACCAGAATGATTAAAAGAACCAGAATGTGAAGAT
92767112 GAACTAGAATTTGAGGATG
191 GAACTAGAATTTGAGGATG
* * *
92767131 AGCCCGAAGCCTTATAATTTCTAGAACCTGATAAAGAACCAGAACTTGTAGAGGAATTAGAAGCC
1 AGCCAGAAGCCTTATAATTGCTAGAACCTGATAAAGAACCAGAACTTGTAGAGGAACTAGAAGCC
* * * * *
92767196 TTAT-AGTTTAATGAAGACTGAGAAGCCGTAGTAGAATTAGAACCCTTAGAACTATTAGAACCTA
66 TCATGA-TTTAATGAAGACTGAGAAGCCGTAGTAGAATCAGAATCCTTAGAATTGTTAGAACCTA
* * *
92767260 AGTTTGTGGAGGAGTTACCAGCAATAGGACCA-AAGTGATTAAAAGAACCAGAATGTGAAGATGA
130 AGTTTGTGGATGAGTTAGCAGC-ATAGAACCAGAA-TGATTAAAAGAACCAGAATGTGAAGATGA
*
92767324 AATAGAATTTGAGGATG
193 ACTAGAATTTGAGGATG
* * * *
92767341 ACCCGGAAGCCTTATAATTGCTAGAACCTGATAAAGAACCAGAACTTGAAGAGGAATTAGAAGCC
1 AGCCAGAAGCCTTATAATTGCTAGAACCTGATAAAGAACCAGAACTTGTAGAGGAACTAGAAGCC
* * ** * * * * *
92767406 CCATGATTTAATGTAGACTGAGAAGCCACAGTAGGAGCAGAATCATTAGAATTGTTGGAACCTAT
66 TCATGATTTAATGAAGACTGAGAAGCCGTAGTAGAATCAGAATCCTTAGAATTGTTAGAACCTAA
* * * *
92767471 GTTTGTGGAAGAGTTAGAAGCACCAGAACCAGAATGCTTAAAAGAA-C----TG-G-AG-T---C
131 GTTTGTGGATGAGTTAGCAGCA-TAGAACCAGAATGATTAAAAGAACCAGAATGTGAAGATGAAC
92767525 T-G-A----A-GATG
195 TAGAATTTGAGGATG
* * * ** * * *
92767533 AGCCAAAAGCCTTAGAACTATTAGAACCTGATAAAGAATCAGAACTTATGGAGGAACTAGAAGCC
1 AGCCAGAAGCCTTATAATTGCTAGAACCTGATAAAGAACCAGAACTTGTAGAGGAACTAGAAGCC
* * * * * *
92767598 CCATGATTTAATGAAGACTGAGAAGCTGTTGTAGAATAAGAATCCTTAGAATGGTTAGAACCTGA
66 TCATGATTTAATGAAGACTGAGAAGCCGTAGTAGAATCAGAATCCTTAGAATTGTTAGAACCTAA
*
92767663 GTTTTTGGATGAGTTAGCAGC-----A-C--------T---AGAACCAGAATGTGAAGATGAACT
131 GTTTGTGGATGAGTTAGCAGCATAGAACCAGAATGATTAAAAGAACCAGAATGTGAAGATGAACT
* ** *
92767711 GGAATTTTTGGATA
196 AGAATTTGAGGATG
* * * * *
92767725 AGCCTGAAGCCTTATAATTGCTAGTACCTGATAGAGAACTAGAACTTGCAGAGGAACTAGAAGCC
1 AGCCAGAAGCCTTATAATTGCTAGAACCTGATAAAGAACCAGAACTTGTAGAGGAACTAGAAGCC
* ** * * *
92767790 TTATGATTTAATGAAGACTGAGAAGTTGTAGTAGAATCAGTATCCTTAGAATTGTCAGAACCCAA
66 TCATGATTTAATGAAGACTGAGAAGCCGTAGTAGAATCAGAATCCTTAGAATTGTTAGAACCTAA
* *
92767855 GTTTGTGGATGAGTTAGTAGCACTAGAACCGGAATG
131 GTTTGTGGATGAGTTAGCAGCA-TAGAACCAGAATG
92767891 TGGAGATAAA
Statistics
Matches: 614, Mismatches: 105, Indels: 87
0.76 0.13 0.11
Matches are distributed among these distances:
174 4 0.01
175 1 0.00
177 1 0.00
179 2 0.00
180 1 0.00
181 2 0.00
182 1 0.00
185 3 0.00
186 2 0.00
187 1 0.00
192 256 0.42
193 1 0.00
197 1 0.00
198 2 0.00
199 2 0.00
202 1 0.00
203 2 0.00
204 1 0.00
205 2 0.00
209 5 0.01
210 316 0.51
211 7 0.01
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.24
Consensus pattern (209 bp):
AGCCAGAAGCCTTATAATTGCTAGAACCTGATAAAGAACCAGAACTTGTAGAGGAACTAGAAGCC
TCATGATTTAATGAAGACTGAGAAGCCGTAGTAGAATCAGAATCCTTAGAATTGTTAGAACCTAA
GTTTGTGGATGAGTTAGCAGCATAGAACCAGAATGATTAAAAGAACCAGAATGTGAAGATGAACT
AGAATTTGAGGATG
Found at i:92767649 original size:192 final size:189
Alignment explanation
Indices: 92767303--92767892 Score: 597
Period size: 192 Copynumber: 3.1 Consensus size: 189
92767293 AGTGATTAAA
* * * * * * * ** * * *
92767303 AGAACCAGAATGTGAAGATGAAATAGAATTTGAGGATGACCCGGAAGCCTTATAATTGCTAGAAC
1 AGAACCAGAATGTGAAGAAGAACTGGAATCTGAAGATAAGCCAAAAGCCTTAGAACTACTAGAAC
* * *
92767368 CTGATAAAGAACCAGAACTTGAAGAGGAATTAGAAGCCCCATGATTTAATGTAGACTGAGAAGCC
66 CTGATAAAGAA-CAGAACTT-AAGAGGAACTAGAAGCCCCATGATTTAATGAAGACTGAGAAGCT
** * * * * * *
92767433 ACAGTAGGAGCAGAATCATTAGAATTGTTGGAACCTATGTTTGTGGAAGAGTTAGAAGCACC
129 GTAGTAGAATCAGAATCCTTAGAATTGTTAGAACCTA-GTTTGTGGATGAGTTAGAAGCACT
* * * *
92767495 AGAACCAGAATGCTTAA-AAGAACTGGAGTCTGAAGATGAGCCAAAAGCCTTAGAACTATTAGAA
1 AGAACCAGAATG-TGAAGAAGAACTGGAATCTGAAGATAAGCCAAAAGCCTTAGAACTACTAGAA
*
92767559 CCTGATAAAGAATCAGAACTTATGGAGGAACTAGAAGCCCCATGATTTAATGAAGACTGAGAAGC
65 CCTGATAAAGAA-CAGAACTTA-AGAGGAACTAGAAGCCCCATGATTTAATGAAGACTGAGAAGC
* * * * *
92767624 TGTTGTAGAATAAGAATCCTTAGAATGGTTAGAACCTGAGTTTTTGGATGAGTTAGCAGCACT
128 TGTAGTAGAATCAGAATCCTTAGAATTGTTAGAACCT-AGTTTGTGGATGAGTTAGAAGCACT
* * *** ** * * * *
92767687 AGAACCAGAATGTGAAGATGAACTGGAATTTTTGGATAAGCCTGAAGCCTTATAATTGCTAGTAC
1 AGAACCAGAATGTGAAGAAGAACTGGAATCTGAAGATAAGCCAAAAGCCTTAGAACTACTAGAAC
* * ** *
92767752 CTGATAGAGAACTAGAACTTGCAGAGGAACTAGAAGCCTTATGATTTAATGAAGACTGAGAAGTT
66 CTGATAAAGAAC-AGAACTT-AAGAGGAACTAGAAGCCCCATGATTTAATGAAGACTGAGAAGCT
* * * *
92767817 GTAGTAGAATCAGTATCCTTAGAATTGTCAGAACCCAAGTTTGTGGATGAGTTAGTAGCACT
129 GTAGTAGAATCAGAATCCTTAGAATTGTTAGAA-CCTAGTTTGTGGATGAGTTAGAAGCACT
*
92767879 AGAACCGGAATGTG
1 AGAACCAGAATGTG
92767893 GAGATAAACT
Statistics
Matches: 329, Mismatches: 62, Indels: 14
0.81 0.15 0.03
Matches are distributed among these distances:
191 5 0.02
192 318 0.97
193 6 0.02
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (189 bp):
AGAACCAGAATGTGAAGAAGAACTGGAATCTGAAGATAAGCCAAAAGCCTTAGAACTACTAGAAC
CTGATAAAGAACAGAACTTAAGAGGAACTAGAAGCCCCATGATTTAATGAAGACTGAGAAGCTGT
AGTAGAATCAGAATCCTTAGAATTGTTAGAACCTAGTTTGTGGATGAGTTAGAAGCACT
Found at i:92768190 original size:18 final size:18
Alignment explanation
Indices: 92768135--92768190 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 18
92768125 ATGCTTAAAA
* * *
92768135 GAACTTGAACGTGAAGAA
1 GAACTAGAATGTGAAGAT
*
92768153 GAACTAGAATGTGAATAT
1 GAACTAGAATGTGAAGAT
*
92768171 GAACTGGAATGTGAAGAT
1 GAACTAGAATGTGAAGAT
92768189 GA
1 GA
92768191 GCCTGAAGCT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.43, C:0.07, G:0.29, T:0.21
Consensus pattern (18 bp):
GAACTAGAATGTGAAGAT
Found at i:92768646 original size:18 final size:18
Alignment explanation
Indices: 92768609--92768653 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
92768599 ACCCTTCCAA
*
92768609 GAACCAGAATGTGAAGAT
1 GAACTAGAATGTGAAGAT
92768627 GAACTAGAATGTGACA-AT
1 GAACTAGAATGTGA-AGAT
*
92768645 GAGCTAGAA
1 GAACTAGAA
92768654 GATTTGGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 23 0.96
19 1 0.04
ACGTcount: A:0.44, C:0.11, G:0.27, T:0.18
Consensus pattern (18 bp):
GAACTAGAATGTGAAGAT
Found at i:92768757 original size:165 final size:165
Alignment explanation
Indices: 92768556--92768914 Score: 601
Period size: 165 Copynumber: 2.2 Consensus size: 165
92768546 GTCATAGCAG
** *
92768556 AACTAGAATCCTTAGGCTTGTTAGAATCTTCGAATGAGCTAGAACCCTTCCAAGAACCAGAATGT
1 AACTAGAATCCTTAGAATTGTTAGAATCTCCGAATGAGCTAGAACCCTTCCAAGAACCAGAATGT
* *
92768621 GAAGATGAACTAGAATGTGACAATGAGCTAGAAGATTTGGAATGGCTAGAACCTGATAAAGAACT
66 GAAGATGAACTAGAATGTGACAATGAGCTAGAAGATTTAGAATGGCTAGAACCCGATAAAGAACT
*
92768686 AGAAGTTGCAGAGGATCTAGAATCCCCATGACCTA
131 AGAAGTTGCAGAGGAACTAGAATCCCCATGACCTA
92768721 AACTAGAATCCTTAGAATTGTTAGAATCTCCGAATGAGCTAGAACCCTTCCAAGAACCAGAATGT
1 AACTAGAATCCTTAGAATTGTTAGAATCTCCGAATGAGCTAGAACCCTTCCAAGAACCAGAATGT
*
92768786 GAAGATGAACTAGAATGTGACAATGAGTTAGAAGATTTAGAATGGCTAGAACCCGATAAAGAACT
66 GAAGATGAACTAGAATGTGACAATGAGCTAGAAGATTTAGAATGGCTAGAACCCGATAAAGAACT
*
92768851 AGAAGTTGTAGAGGAACTAGAATCCCCATGACCTA
131 AGAAGTTGCAGAGGAACTAGAATCCCCATGACCTA
** * * *
92768886 AACCGGAGTCTTTAGAATTATTAGAATCT
1 AACTAGAATCCTTAGAATTGTTAGAATCT
92768915 ATGGGAGAGC
Statistics
Matches: 181, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
165 181 1.00
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.24
Consensus pattern (165 bp):
AACTAGAATCCTTAGAATTGTTAGAATCTCCGAATGAGCTAGAACCCTTCCAAGAACCAGAATGT
GAAGATGAACTAGAATGTGACAATGAGCTAGAAGATTTAGAATGGCTAGAACCCGATAAAGAACT
AGAAGTTGCAGAGGAACTAGAATCCCCATGACCTA
Found at i:92768968 original size:165 final size:165
Alignment explanation
Indices: 92768560--92768983 Score: 514
Period size: 165 Copynumber: 2.6 Consensus size: 165
92768550 TAGCAGAACT
** * * * *
92768560 AGAATCCTTAGGCTTGTTAGAATCTTCGAATGAGCTAGAACCCTTCCAAGAACCAGAATGTGAAG
1 AGAATCCTTAGAATTATTAGAATCTCCGAATGAGCTAGAACCCTTCAAAGAACCAGAATCTGAAG
* * * *
92768625 ATGAACTAGAATGTGACAATGAGCTAGAAGATTTGGAATGGCTAGAACCTGATAAAGAACTAGAA
66 AAGAACCAGAATGTGACAATGAGCTAGAAGATTTAGAATGGCTAGAACCCGATAAAGAACTAGAA
* *
92768690 GTTGCAGAGGATCTAGAATCCCCATGACCTAAACT
131 GTTGCAGAGGAACTAGAATCCCCATGACCTAAACC
* * *
92768725 AGAATCCTTAGAATTGTTAGAATCTCCGAATGAGCTAGAACCCTTCCAAGAACCAGAATGTGAAG
1 AGAATCCTTAGAATTATTAGAATCTCCGAATGAGCTAGAACCCTTCAAAGAACCAGAATCTGAAG
* * *
92768790 ATGAACTAGAATGTGACAATGAGTTAGAAGATTTAGAATGGCTAGAACCCGATAAAGAACTAGAA
66 AAGAACCAGAATGTGACAATGAGCTAGAAGATTTAGAATGGCTAGAACCCGATAAAGAACTAGAA
*
92768855 GTTGTAGAGGAACTAGAATCCCCATGACCTAAACC
131 GTTGCAGAGGAACTAGAATCCCCATGACCTAAACC
* * * ** * * * *
92768890 GGAGTCTTTAGAATTATTAGAATCTATGGGA-GAGCTAGAA-CCTTTAAATGAACCTGAACTCTT
1 AGAATCCTTAGAATTATTAGAATCT-CCGAATGAGCTAGAACCCTTCAAA-GAACCAGAA-TCTG
* *
92768953 AA-AAGATCCAGAATGTGA-AGATGAACTAGAA
63 AAGAAGAACCAGAATGTGACA-ATGAGCTAGAA
92768984 TGTGAAGATG
Statistics
Matches: 229, Mismatches: 26, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
164 7 0.03
165 216 0.94
166 6 0.03
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (165 bp):
AGAATCCTTAGAATTATTAGAATCTCCGAATGAGCTAGAACCCTTCAAAGAACCAGAATCTGAAG
AAGAACCAGAATGTGACAATGAGCTAGAAGATTTAGAATGGCTAGAACCCGATAAAGAACTAGAA
GTTGCAGAGGAACTAGAATCCCCATGACCTAAACC
Found at i:92769007 original size:18 final size:18
Alignment explanation
Indices: 92768960--92769001 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
92768950 CTTAAAAGAT
92768960 CCAGAATGTGAAGATGAA
1 CCAGAATGTGAAGATGAA
* *
92768978 CTAGAATGTGAAGATGAG
1 CCAGAATGTGAAGATGAA
92768996 CCAGAA
1 CCAGAA
92769002 GCTGAACTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.43, C:0.12, G:0.29, T:0.17
Consensus pattern (18 bp):
CCAGAATGTGAAGATGAA
Found at i:92772589 original size:9 final size:10
Alignment explanation
Indices: 92772575--92772623 Score: 70
Period size: 9 Copynumber: 5.3 Consensus size: 10
92772565 ATAAAAATCT
92772575 AAATATTA-A
1 AAATATTATA
92772584 AAATATTA-A
1 AAATATTATA
92772593 AAAT-TTATA
1 AAATATTATA
92772602 AAATATTATA
1 AAATATTATA
92772612 AAA-ATTATA
1 AAATATTATA
92772621 AAA
1 AAA
92772624 ATCACAAACG
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
8 3 0.08
9 27 0.71
10 8 0.21
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (10 bp):
AAATATTATA
Found at i:92772614 original size:19 final size:18
Alignment explanation
Indices: 92772561--92772623 Score: 69
Period size: 17 Copynumber: 3.6 Consensus size: 18
92772551 TTAGAAATAG
92772561 AATTATAAAA-ATCT-AAA
1 AATTATAAAATAT-TAAAA
*
92772578 TATTA-AAAATATTAAAA
1 AATTATAAAATATTAAAA
*
92772595 ATTTATAAAATATTATAAA
1 AATTATAAAATATTA-AAA
92772614 AATTATAAAA
1 AATTATAAAA
92772624 ATCACAAACG
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
16 5 0.13
17 12 0.32
18 9 0.24
19 12 0.32
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (18 bp):
AATTATAAAATATTAAAA
Found at i:92772624 original size:9 final size:9
Alignment explanation
Indices: 92772561--92772625 Score: 64
Period size: 9 Copynumber: 7.3 Consensus size: 9
92772551 TTAGAAATAG
92772561 AATTATAAA
1 AATTATAAA
*
92772570 AA-TCTAAA
1 AATTATAAA
*
92772578 TATTA-AAA
1 AATTATAAA
92772586 ATATTA-AAA
1 A-ATTATAAA
*
92772595 ATTTATAAA
1 AATTATAAA
92772604 ATATTATAAA
1 A-ATTATAAA
92772614 AATTATAAA
1 AATTATAAA
92772623 AAT
1 AAT
92772626 CACAAACGTA
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
8 12 0.26
9 26 0.57
10 8 0.17
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (9 bp):
AATTATAAA
Found at i:92772978 original size:11 final size:10
Alignment explanation
Indices: 92772947--92772989 Score: 56
Period size: 9 Copynumber: 4.5 Consensus size: 10
92772937 TCATAAATAT
92772947 TAAAATATTA
1 TAAAATATTA
92772957 -AAAAT-TTA
1 TAAAATATTA
92772965 TAAAAGTATTA
1 TAAAA-TATTA
92772976 TAAAA-ATTA
1 TAAAATATTA
92772985 TAAAA
1 TAAAA
92772990 AATATTTAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
8 3 0.10
9 18 0.60
10 1 0.03
11 8 0.27
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (10 bp):
TAAAATATTA
Found at i:92772990 original size:9 final size:9
Alignment explanation
Indices: 92772932--92772990 Score: 50
Period size: 9 Copynumber: 6.6 Consensus size: 9
92772922 AATTTTTTTA
*
92772932 AAAAATCAT
1 AAAAATTAT
*
92772941 AAATATTA-
1 AAAAATTAT
*
92772949 AAATATTA-
1 AAAAATTAT
*
92772957 AAAATTTAT
1 AAAAATTAT
92772966 AAAAGTATTAT
1 AAAA--ATTAT
92772977 AAAAATTAT
1 AAAAATTAT
92772986 AAAAA
1 AAAAA
92772991 ATATTTAGAC
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
8 14 0.33
9 20 0.48
11 8 0.19
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (9 bp):
AAAAATTAT
Found at i:92772990 original size:21 final size:22
Alignment explanation
Indices: 92772955--92773065 Score: 75
Period size: 22 Copynumber: 4.8 Consensus size: 22
92772945 ATTAAAATAT
*
92772955 TAAAAATT-TATAAAAGTA-TTA
1 TAAAAATTATA-AAAAATATTTA
92772976 TAAAAATTATAAAAAATATTTA
1 TAAAAATTATAAAAAATATTTA
* **
92772998 GACAAAATTATAAAAAA-AAATA
1 TA-AAAATTATAAAAAATATTTA
*
92773020 CAAAAACTTATAAAAAATCACAAATGTTA
1 TAAAAA-TTATAAAAAAT-----AT-TTA
92773049 TAAAAATTATAAAAAAT
1 TAAAAATTATAAAAAAT
92773066 CATAAAAACT
Statistics
Matches: 71, Mismatches: 8, Indels: 15
0.76 0.09 0.16
Matches are distributed among these distances:
21 18 0.25
22 20 0.28
23 14 0.20
28 12 0.17
29 7 0.10
ACGTcount: A:0.64, C:0.05, G:0.03, T:0.29
Consensus pattern (22 bp):
TAAAAATTATAAAAAATATTTA
Found at i:92772991 original size:22 final size:21
Alignment explanation
Indices: 92772948--92773037 Score: 85
Period size: 22 Copynumber: 4.2 Consensus size: 21
92772938 CATAAATATT
*
92772948 AAAATATTA-AAAATTTAT-A
1 AAAATATTATAAAAATTATAA
*
92772967 AAAGTATTATAAAAATTATAA
1 AAAATATTATAAAAATTATAA
*
92772988 AAAATATTTAGACAAAATTATAA
1 AAAATA-TTATA-AAAATTATAA
* * *
92773011 AAAAAAATACAAAAACTTATAA
1 AAAATATTATAAAAA-TTATAA
92773033 AAAAT
1 AAAAT
92773038 CACAAATGTT
Statistics
Matches: 58, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
19 8 0.14
20 8 0.14
21 10 0.17
22 17 0.29
23 15 0.26
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.29
Consensus pattern (21 bp):
AAAATATTATAAAAATTATAA
Found at i:92772992 original size:10 final size:10
Alignment explanation
Indices: 92772955--92773310 Score: 120
Period size: 10 Copynumber: 35.4 Consensus size: 10
92772945 ATTAAAATAT
*
92772955 TAAAAATTTA
1 TAAAAAATTA
*
92772965 TAAAAGTATTA
1 TAAAA-AATTA
92772976 T-AAAAATTA
1 TAAAAAATTA
*
92772985 TAAAAAATATT
1 TAAAAAAT-TA
92772996 TAGACAAAATTA
1 TA-A-AAAATTA
**
92773008 TAAAAAAAAA
1 TAAAAAATTA
92773018 TACAAAAACTTA
1 TA-AAAAA-TTA
*
92773030 TAAAAAATCA
1 TAAAAAATTA
* **
92773040 -CAAATGTTA
1 TAAAAAATTA
92773049 T-AAAAATTA
1 TAAAAAATTA
*
92773058 TAAAAAATCA
1 TAAAAAATTA
*
92773068 TAAAAACTTA
1 TAAAAAATTA
* **
92773078 TGATATTATT-
1 T-AAAAAATTA
*
92773088 TAAAAATTTA
1 TAAAAAATTA
*
92773098 TTAAAAATT-
1 TAAAAAATTA
** *
92773107 TTTAAATTTA
1 TAAAAAATTA
* *
92773117 TATAAACTTA
1 TAAAAAATTA
*** *
92773127 T-AATTTTTT
1 TAAAAAATTA
**
92773136 TAAGAAAAACA
1 TAA-AAAATTA
92773147 TAGATAAAATTTA
1 TA-A-AAAA-TTA
*
92773160 TAAAAACTT-
1 TAAAAAATTA
*
92773169 TAAAAAATAA
1 TAAAAAATTA
92773179 TAAAAAATTA
1 TAAAAAATTA
* *
92773189 T-GAACATTA
1 TAAAAAATTA
*
92773198 TAAAAACTTA
1 TAAAAAATTA
* * **
92773208 TTAACAATCC
1 TAAAAAATTA
92773218 TAAAAAA-TA
1 TAAAAAATTA
*
92773227 TAATAAAAATA
1 TAA-AAAATTA
*
92773238 TGAAAAATTA
1 TAAAAAATTA
*
92773248 T-AAAACTTA
1 TAAAAAATTA
* *
92773257 GAAAAAATCA
1 TAAAAAATTA
*
92773267 TAAAAACTTA
1 TAAAAAATTA
*
92773277 TAAAAAAATA
1 TAAAAAATTA
* *
92773287 TAATAAGTTA
1 TAAAAAATTA
*
92773297 TAAAAAGTTA
1 TAAAAAATTA
92773307 TAAA
1 TAAA
92773311 TTTTTGAAAT
Statistics
Matches: 245, Mismatches: 80, Indels: 42
0.67 0.22 0.11
Matches are distributed among these distances:
9 56 0.23
10 136 0.56
11 32 0.13
12 13 0.05
13 8 0.03
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.32
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:92773036 original size:12 final size:11
Alignment explanation
Indices: 92772956--92773036 Score: 53
Period size: 11 Copynumber: 7.5 Consensus size: 11
92772946 TTAAAATATT
*
92772956 AAAAATTTATA
1 AAAAAATTATA
**
92772967 AAAGTATTAT-
1 AAAAAATTATA
92772977 -AAAAATTATA
1 AAAAAATTATA
92772987 AAAAATATT-TA
1 AAAAA-ATTATA
*
92772998 GACAAAATTATA
1 -AAAAAATTATA
*
92773010 AAAAAA-AATA
1 AAAAAATTATA
*
92773020 CAAAAACTTATA
1 -AAAAAATTATA
92773032 AAAAA
1 AAAAA
92773037 TCACAAATGT
Statistics
Matches: 53, Mismatches: 10, Indels: 14
0.69 0.13 0.18
Matches are distributed among these distances:
9 7 0.13
10 3 0.06
11 31 0.58
12 12 0.23
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.27
Consensus pattern (11 bp):
AAAAAATTATA
Found at i:92773107 original size:19 final size:20
Alignment explanation
Indices: 92773085--92773122 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
92773075 TTATGATATT
92773085 ATTTAAAAATTTAT-TAAAA
1 ATTTAAAAATTTATATAAAA
**
92773104 ATTTTTAAATTTATATAAA
1 ATTTAAAAATTTATATAAA
92773123 CTTATAATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
ATTTAAAAATTTATATAAAA
Found at i:92773222 original size:49 final size:48
Alignment explanation
Indices: 92773169--92773301 Score: 135
Period size: 49 Copynumber: 2.7 Consensus size: 48
92773159 ATAAAAACTT
* * ** * *
92773169 TAAAAAATAATAAAAAATTATG-AACATTATAAAAACTTATTAACAATCC
1 TAAAAAAT-ATAAAAAAATATGAAAAATTAT-AAAACTTAGAAAAAATCA
92773218 TAAAAAATATAATAAAAATATGAAAAATTATAAAACTTAGAAAAAATCA
1 TAAAAAATATAA-AAAAATATGAAAAATTATAAAACTTAGAAAAAATCA
* *
92773267 TAAAAACTTATAAAAAAATAT-AATAAGTTATAAAA
1 TAAAAA-ATATAAAAAAATATGAA-AAATTATAAAA
92773302 AGTTATAAAT
Statistics
Matches: 72, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
48 6 0.08
49 54 0.75
50 12 0.17
ACGTcount: A:0.64, C:0.06, G:0.03, T:0.27
Consensus pattern (48 bp):
TAAAAAATATAAAAAAATATGAAAAATTATAAAACTTAGAAAAAATCA
Found at i:92773245 original size:20 final size:21
Alignment explanation
Indices: 92773220--92773292 Score: 66
Period size: 18 Copynumber: 3.6 Consensus size: 21
92773210 AACAATCCTA
92773220 AAAAATATAATAAAAATAT-G
1 AAAAATATAATAAAAATATAG
*
92773240 AAAAAT-T-ATAAAACT-TAG
1 AAAAATATAATAAAAATATAG
* *
92773258 AAAAA-ATCATAAAAACTTATAA
1 AAAAATATAATAAAAA--TATAG
92773280 AAAAATATAATAA
1 AAAAATATAATAA
92773293 GTTATAAAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
17 1 0.02
18 14 0.33
19 7 0.17
20 6 0.14
21 1 0.02
22 7 0.17
23 6 0.14
ACGTcount: A:0.68, C:0.04, G:0.03, T:0.25
Consensus pattern (21 bp):
AAAAATATAATAAAAATATAG
Found at i:92782255 original size:40 final size:40
Alignment explanation
Indices: 92782183--92782277 Score: 122
Period size: 40 Copynumber: 2.4 Consensus size: 40
92782173 CATCTCCGTC
* * *
92782183 CAACCCAACACACC-A-TGTGGGGATAAGATCAACCCACT
1 CAACCCTACACACCAAGTATGGGGATAAAATCAACCCACT
* * *
92782221 CAGCCCTACATACCAAGTATGGGGATAAAATCAACCCATT
1 CAACCCTACACACCAAGTATGGGGATAAAATCAACCCACT
92782261 CAACCCTACACACCAAG
1 CAACCCTACACACCAAG
92782278 GGGTACCGTA
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
38 11 0.23
39 1 0.02
40 35 0.74
ACGTcount: A:0.38, C:0.34, G:0.14, T:0.15
Consensus pattern (40 bp):
CAACCCTACACACCAAGTATGGGGATAAAATCAACCCACT
Found at i:92786583 original size:40 final size:40
Alignment explanation
Indices: 92786423--92786602 Score: 238
Period size: 40 Copynumber: 4.5 Consensus size: 40
92786413 AATGGTATTT
* * *
92786423 GGGCTTAAAGACTCGTAGGCTTCGGGCTGGAATCGTATCC
1 GGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATCGTATCC
* * *
92786463 GGGCTTAAAGACCTGCAAGCTTCGTGTTGGAATCGTATCC
1 GGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATCGTATCC
* *
92786503 GGGCTTAAAGACTCGCAGGCTTCGTGCTGGAATTGTATCC
1 GGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATCGTATCC
*
92786543 GGGCTTAAAGACCCGCAGGCTTCGTGCTGGAAT-GACATCC
1 GGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATCG-TATCC
* *
92786583 GGG-TTAAAAACCTGCAGGCT
1 GGGCTTAAAGACCCGCAGGCT
92786603 GTGCTAGATA
Statistics
Matches: 124, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
39 16 0.13
40 108 0.87
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.24
Consensus pattern (40 bp):
GGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATCGTATCC
Found at i:92790941 original size:19 final size:20
Alignment explanation
Indices: 92790913--92790954 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
92790903 CTTGAATTTG
92790913 TTATAAGTTTTTA-AAATAT
1 TTATAAGTTTTTATAAATAT
* *
92790932 TTATAGGTTTTTATAAATTT
1 TTATAAGTTTTTATAAATAT
92790952 TTA
1 TTA
92790955 AAATATTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (20 bp):
TTATAAGTTTTTATAAATAT
Found at i:92790952 original size:10 final size:10
Alignment explanation
Indices: 92790879--92790966 Score: 58
Period size: 10 Copynumber: 8.9 Consensus size: 10
92790869 ATAACTTTTT
92790879 TTTTTATAAA
1 TTTTTATAAA
92790889 TTGTTTAT-AA
1 TT-TTTATAAA
* *
92790899 TTTACT-TGAA
1 TTT-TTATAAA
*
92790909 TTTGTTATAAG
1 TTT-TTATAAA
92790920 TTTTTA-AAA
1 TTTTTATAAA
* **
92790929 TATTTATAGG
1 TTTTTATAAA
92790939 TTTTTATAAA
1 TTTTTATAAA
92790949 TTTTTA-AAA
1 TTTTTATAAA
*
92790958 TATTTATAA
1 TTTTTATAA
92790967 TATGTTTGGT
Statistics
Matches: 59, Mismatches: 13, Indels: 12
0.70 0.15 0.14
Matches are distributed among these distances:
9 17 0.29
10 32 0.54
11 10 0.17
ACGTcount: A:0.36, C:0.01, G:0.07, T:0.56
Consensus pattern (10 bp):
TTTTTATAAA
Found at i:92791091 original size:51 final size:50
Alignment explanation
Indices: 92790998--92791093 Score: 115
Period size: 50 Copynumber: 1.9 Consensus size: 50
92790988 TATATTTATT
* * *
92790998 AAAATTTTTATAAGTTTTGTATTTTTATAAGCTTATATAATTTTTAAAGC
1 AAAATTTATATAAATTTTGTATTTTTATAAGATTATATAATTTTTAAAGC
*
92791048 AAAATTTATATAAATTTT-TAATATTTTATAATATTA-ATAAATTTTT
1 AAAATTTATATAAATTTTGT-AT-TTTTATAAGATTATAT-AATTTTT
92791094 TATGATTTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
49 1 0.03
50 20 0.51
51 18 0.46
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.53
Consensus pattern (50 bp):
AAAATTTATATAAATTTTGTATTTTTATAAGATTATATAATTTTTAAAGC
Found at i:92799903 original size:2 final size:2
Alignment explanation
Indices: 92799896--92799923 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
92799886 TTAAGATAAC
92799896 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
92799924 TCCAATTTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:92807400 original size:25 final size:25
Alignment explanation
Indices: 92807372--92807422 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
92807362 ACCAAATAAG
92807372 ATAAATATTTTCTATCTATAATGAT
1 ATAAATATTTTCTATCTATAATGAT
*
92807397 ATAAATATTTTCTATCTGTAATGAT
1 ATAAATATTTTCTATCTATAATGAT
92807422 A
1 A
92807423 GAATTCGTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.39, C:0.08, G:0.06, T:0.47
Consensus pattern (25 bp):
ATAAATATTTTCTATCTATAATGAT
Found at i:92809025 original size:26 final size:23
Alignment explanation
Indices: 92808976--92809023 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
92808966 TTAATCAAAC
92808976 TGGGAACAACCAATTATTAATGA
1 TGGGAACAACCAATTATTAATGA
92808999 TGGGAACAACCAATTATTAATGA
1 TGGGAACAACCAATTATTAATGA
92809022 TG
1 TG
92809024 ATTTAGCATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.42, C:0.12, G:0.19, T:0.27
Consensus pattern (23 bp):
TGGGAACAACCAATTATTAATGA
Found at i:92811285 original size:42 final size:42
Alignment explanation
Indices: 92811226--92811430 Score: 230
Period size: 42 Copynumber: 4.9 Consensus size: 42
92811216 AAATGGTTTT
*
92811226 ACAAGCTGTGTATCAGTGAAGCTCCTCACATGAGCTTAAATG
1 ACAAGCTGTGTATCAGTGAAGCTCCCCACATGAGCTTAAATG
* * * *
92811268 ACAAGCTATGTATCAGTGAAGCTCCCTAAATGAGCTTAAGTG
1 ACAAGCTGTGTATCAGTGAAGCTCCCCACATGAGCTTAAATG
* ** ** * *
92811310 ATAAGCTGTGTATCAACGAAGCTCCCCATGTGAGCTGAAGTG
1 ACAAGCTGTGTATCAGTGAAGCTCCCCACATGAGCTTAAATG
* ** *
92811352 ACAAGTTGTGTATTGGTGAAGCTCCCCACATGAGCGTAAATG
1 ACAAGCTGTGTATCAGTGAAGCTCCCCACATGAGCTTAAATG
** * *
92811394 ACAAGCTGTGTATCAACGAAGCTCCCCATACGAGCTT
1 ACAAGCTGTGTATCAGTGAAGCTCCCCACATGAGCTT
92811431 GAGTGAATGT
Statistics
Matches: 131, Mismatches: 32, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
42 131 1.00
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (42 bp):
ACAAGCTGTGTATCAGTGAAGCTCCCCACATGAGCTTAAATG
Found at i:92811371 original size:84 final size:84
Alignment explanation
Indices: 92811226--92811429 Score: 255
Period size: 84 Copynumber: 2.4 Consensus size: 84
92811216 AAATGGTTTT
** * * *
92811226 ACAAGCTGTGTATCAGTGAAGCTCCTCACATGAGCTTAAATGACAAGCTATGTATCAGTGAAGCT
1 ACAAGCTGTGTATCAACGAAGCTCCCCATATGAGCTGAAATGACAAGCTATGTATCAGTGAAGCT
* * *
92811291 CCCTAAATGAGCTTAAGTG
66 CCCCAAATGAGCGTAAATG
* * * * * **
92811310 ATAAGCTGTGTATCAACGAAGCTCCCCATGTGAGCTGAAGTGACAAGTTGTGTATTGGTGAAGCT
1 ACAAGCTGTGTATCAACGAAGCTCCCCATATGAGCTGAAATGACAAGCTATGTATCAGTGAAGCT
*
92811375 CCCCACATGAGCGTAAATG
66 CCCCAAATGAGCGTAAATG
*
92811394 ACAAGCTGTGTATCAACGAAGCTCCCCATACGAGCT
1 ACAAGCTGTGTATCAACGAAGCTCCCCATATGAGCT
92811430 TGAGTGAATG
Statistics
Matches: 101, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
84 101 1.00
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (84 bp):
ACAAGCTGTGTATCAACGAAGCTCCCCATATGAGCTGAAATGACAAGCTATGTATCAGTGAAGCT
CCCCAAATGAGCGTAAATG
Found at i:92813928 original size:39 final size:39
Alignment explanation
Indices: 92813885--92813980 Score: 122
Period size: 39 Copynumber: 2.5 Consensus size: 39
92813875 TACTTGTACA
* * *
92813885 CATATATTACATTACACATATAATCACGTAACATTT-AAG
1 CATATATCACAATACACATATAATCACATAAC-TTTCAAG
* *
92813924 CATATATCACAATACTCATATAATCACATAGCTTTCAAG
1 CATATATCACAATACACATATAATCACATAACTTTCAAG
*
92813963 CATATACCACAATACACA
1 CATATATCACAATACACA
92813981 CAATCATATT
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
38 3 0.06
39 46 0.94
ACGTcount: A:0.44, C:0.23, G:0.04, T:0.29
Consensus pattern (39 bp):
CATATATCACAATACACATATAATCACATAACTTTCAAG
Found at i:92841580 original size:17 final size:17
Alignment explanation
Indices: 92841541--92841583 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
92841531 CTATGATTGT
**
92841541 ATTGA-ATTTGATGTTA
1 ATTGACATTTGATGGAA
*
92841557 ATGGACATTTGATGGAA
1 ATTGACATTTGATGGAA
92841574 ATTGACATTT
1 ATTGACATTT
92841584 TAAATGAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.33, C:0.05, G:0.21, T:0.42
Consensus pattern (17 bp):
ATTGACATTTGATGGAA
Found at i:92844507 original size:20 final size:20
Alignment explanation
Indices: 92844470--92844507 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
92844460 TGATGGGGAG
*
92844470 CAAGAATATCAAGTTGGATT
1 CAAGAATATCAAGCTGGATT
92844490 CAAGAA-ATCGAAGCTGGA
1 CAAGAATATC-AAGCTGGA
92844508 GGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (20 bp):
CAAGAATATCAAGCTGGATT
Found at i:92847758 original size:66 final size:66
Alignment explanation
Indices: 92847600--92847758 Score: 189
Period size: 67 Copynumber: 2.4 Consensus size: 66
92847590 CATTATGATG
* * * * *
92847600 TAGCTAGGTCGCATGGGTGATACT-A-TGTGTACACCATGTAGACAAGAGAGATACGGGATATAT
1 TAGCTAGGTCGCATGGGTGGTACTAAGTGAGGACACCATGTAGACAAGAGAGATACGAGATATAA
*
92847663 G
66 C
* * * *
92847664 TAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATA-A
1 TAGCTAGGTCGCATGGGTGGTACTAAGTG-AGGACACCATGTAGACAAGAGAGATACGAGATATA
92847728 AC
65 AC
*
92847730 TAGCTAGGTCACATGGGTGGTACTAAGTG
1 TAGCTAGGTCGCATGGGTGGTACTAAGTG
92847759 TTCACCATGT
Statistics
Matches: 78, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
64 20 0.26
65 1 0.01
66 28 0.36
67 29 0.37
ACGTcount: A:0.31, C:0.16, G:0.30, T:0.23
Consensus pattern (66 bp):
TAGCTAGGTCGCATGGGTGGTACTAAGTGAGGACACCATGTAGACAAGAGAGATACGAGATATAA
C
Found at i:92849959 original size:46 final size:46
Alignment explanation
Indices: 92849904--92850117 Score: 313
Period size: 46 Copynumber: 4.7 Consensus size: 46
92849894 AGTGTGCTCT
*
92849904 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
92849950 CTAATATGAAATATGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
92849996 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ***
92850042 GTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
92850088 ATGACA-GAAATGAGTAAGACCATAGTTGAA
1 CTGATATGAAATGTGTAAGACCATGGTTGAA
92850118 GACACTATGG
Statistics
Matches: 152, Mismatches: 16, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
45 21 0.14
46 131 0.86
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:92850151 original size:44 final size:45
Alignment explanation
Indices: 92849919--92850152 Score: 157
Period size: 46 Copynumber: 5.2 Consensus size: 45
92849909 ATGAAATGTG
* * * * * * **
92849919 TAAGACCATGGTTGAAAGATACCATGGCAGCCTAATATGAAATATG
1 TAAGACCATAGTTGAAAGACACCATGGCAACATGACA-GAAATAAA
* * * * ***
92849965 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTG
1 TAAGACCATAGTTGAAAGACACCATGGCAACATGACA-GAAATAAA
* * ** * *
92850011 TAAGACCATGGTTGAAAGATACCATGGCAATGTGATATGAAATGAA
1 TAAGACCATAGTTGAAAGACACCATGGCAACATGACA-GAAATAAA
* * * * *
92850057 CAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAATGAG
1 TAAGACCATAGTTGAAAGACACCATGGCAACATGACAGAAATAAA
* * *
92850102 TAAGACCATAGTTG-AAGACACTATGGCATCATGTCA-AAGATAAA
1 TAAGACCATAGTTGAAAGACACCATGGCAACATGACAGAA-ATAAA
92850146 TAAGACC
1 TAAGACC
92850153 GTGGATGGGA
Statistics
Matches: 167, Mismatches: 20, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
43 2 0.01
44 28 0.17
45 19 0.11
46 118 0.71
ACGTcount: A:0.41, C:0.15, G:0.22, T:0.22
Consensus pattern (45 bp):
TAAGACCATAGTTGAAAGACACCATGGCAACATGACAGAAATAAA
Found at i:92853065 original size:11 final size:11
Alignment explanation
Indices: 92853049--92853078 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
92853039 CCATACTTTC
92853049 ATCATTCACTT
1 ATCATTCACTT
92853060 ATCATTCACTT
1 ATCATTCACTT
92853071 ATCATTCA
1 ATCATTCA
92853079 TATACCATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.30, C:0.27, G:0.00, T:0.43
Consensus pattern (11 bp):
ATCATTCACTT
Found at i:92853087 original size:22 final size:22
Alignment explanation
Indices: 92853031--92853090 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 22
92853021 TTAACATATT
92853031 TTCACTTACCA-T-ACTTTCATCA
1 TTCACTTACCATTCAC-TT-ATCA
*
92853053 TTCACTTATCATTCACTTATCA
1 TTCACTTACCATTCACTTATCA
92853075 TTCA-TATACCATTCAC
1 TTCACT-TACCATTCAC
92853091 ATTGCCCATT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
21 1 0.03
22 27 0.82
23 3 0.09
24 2 0.06
ACGTcount: A:0.28, C:0.30, G:0.00, T:0.42
Consensus pattern (22 bp):
TTCACTTACCATTCACTTATCA
Found at i:92861256 original size:16 final size:16
Alignment explanation
Indices: 92861237--92861267 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
92861227 TAAATAAAAA
92861237 TAAAAATAAAAGTAAT
1 TAAAAATAAAAGTAAT
*
92861253 TAAAAATAATAGTAA
1 TAAAAATAAAAGTAA
92861268 AGACAAACAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (16 bp):
TAAAAATAAAAGTAAT
Found at i:92861268 original size:22 final size:22
Alignment explanation
Indices: 92861219--92861268 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
92861209 TAATGTGCCC
92861219 AGTAAAAGTAAATAAAAATAAA
1 AGTAAAAGTAAATAAAAATAAA
* * *
92861241 AATAAAAGTAATTAAAAATAAT
1 AGTAAAAGTAAATAAAAATAAA
92861263 AGTAAA
1 AGTAAA
92861269 GACAAACAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.70, C:0.00, G:0.08, T:0.22
Consensus pattern (22 bp):
AGTAAAAGTAAATAAAAATAAA
Found at i:92863882 original size:32 final size:28
Alignment explanation
Indices: 92863821--92863877 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
92863811 CAGAATACAA
92863821 ATTCAGTCAGTCAATCAAAAGGAGACAC
1 ATTCAGTCAGTCAATCAAAAGGAGACAC
92863849 ATTCAGTCAGTCAATCAAAAGGAGACAC
1 ATTCAGTCAGTCAATCAAAAGGAGACAC
92863877 A
1 A
92863878 CACATCCGGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.44, C:0.21, G:0.18, T:0.18
Consensus pattern (28 bp):
ATTCAGTCAGTCAATCAAAAGGAGACAC
Done.