Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 278 of 349
Found at i:92866355 original size:21 final size:20
Alignment explanation
Indices: 92866327--92866368 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
92866317 ATTTCTAATC
92866327 TTTAATTTGGATT-CTTTTTT
1 TTTAATTT-GATTACTTTTTT
*
92866347 TTTATATTTTATTACTTTTTT
1 TTTA-ATTTGATTACTTTTTT
92866368 T
1 T
92866369 AATTTTTTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.17, C:0.05, G:0.05, T:0.74
Consensus pattern (20 bp):
TTTAATTTGATTACTTTTTT
Found at i:92868049 original size:14 final size:15
Alignment explanation
Indices: 92868024--92868052 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
92868014 TATACAACGA
92868024 TTTAACTTAATTAAC
1 TTTAACTTAATTAAC
92868039 TTTAA-TTAATTAAC
1 TTTAACTTAATTAAC
92868053 ATAATATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.48
Consensus pattern (15 bp):
TTTAACTTAATTAAC
Found at i:92878325 original size:29 final size:29
Alignment explanation
Indices: 92878283--92878342 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
92878273 TATTAGTCTA
92878283 AATTTAGAGGTTGAATAAAATATGAAATT
1 AATTTAGAGGTTGAATAAAATATGAAATT
92878312 AATTTAGAGGTTGAATAAAATATGAAATT
1 AATTTAGAGGTTGAATAAAATATGAAATT
92878341 AA
1 AA
92878343 ATCTTATCGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.50, C:0.00, G:0.17, T:0.33
Consensus pattern (29 bp):
AATTTAGAGGTTGAATAAAATATGAAATT
Found at i:92881739 original size:25 final size:25
Alignment explanation
Indices: 92881711--92881758 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
92881701 TAACAATGCC
*
92881711 GATGCCATGTTCCAAACATGGTCAT
1 GATGCCATGTCCCAAACATGGTCAT
92881736 GATGCCATGTCCCAAACATGGTC
1 GATGCCATGTCCCAAACATGGTC
92881759 TTACACTGGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (25 bp):
GATGCCATGTCCCAAACATGGTCAT
Found at i:92883561 original size:40 final size:40
Alignment explanation
Indices: 92883504--92883721 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
92883494 TGGATGATAA
* * *
92883504 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
92883544 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
92883584 CCGGGCTAAGTCCCGCAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
92883624 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
92883664 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
92883704 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
92883722 TACTTGGCTT
Statistics
Matches: 162, Mismatches: 14, Indels: 5
0.90 0.08 0.03
Matches are distributed among these distances:
39 16 0.10
40 146 0.90
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:92889707 original size:47 final size:47
Alignment explanation
Indices: 92889648--92890023 Score: 644
Period size: 47 Copynumber: 7.9 Consensus size: 47
92889638 TAGTATGGCG
*
92889648 TAATGACCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
92889695 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
92889742 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
92889789 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
92889838 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
92889885 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
92889932 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCC
* * * * * *
92889980 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
92890024 TCCCGAAGGG
Statistics
Matches: 315, Mismatches: 11, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
47 228 0.72
48 40 0.13
49 47 0.15
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:92889904 original size:143 final size:142
Alignment explanation
Indices: 92889648--92890023 Score: 655
Period size: 143 Copynumber: 2.6 Consensus size: 142
92889638 TAGTATGGCG
*
92889648 TAATGACCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
92889712 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
66 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
92889777 TGTGATAAGGCC
131 TGTGATAAGGCC
92889789 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGAT
92889854 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
65 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
92889919 ATGTGATAAGGCC
130 ATGTGATAAGGCC
* * * * * *
92889932 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
92889997 GATGTGAAAGTGTATAAATGTGATAAG
66 AATGTGAAAGTGTATATATGTGATAAG
92890024 TCCCGAAGGG
Statistics
Matches: 224, Mismatches: 9, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
141 28 0.12
142 55 0.25
143 141 0.63
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (142 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCC
Found at i:92890198 original size:37 final size:37
Alignment explanation
Indices: 92890142--92890220 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
92890132 CCGAGCTCTA
* * *
92890142 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
92890179 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
92890216 AAGAC
1 AAGAC
92890221 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:92891487 original size:40 final size:40
Alignment explanation
Indices: 92891432--92891634 Score: 374
Period size: 40 Copynumber: 5.1 Consensus size: 40
92891422 GAGAATTGAG
92891432 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
92891472 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
92891512 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
92891552 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* *
92891592 AGTGATGTATCCGGGCTAAGT-CCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
92891631 -GTGA
1 AGTGA
92891635 GTAGGCTTCG
Statistics
Matches: 161, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
38 4 0.02
39 17 0.11
40 140 0.87
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:92892855 original size:47 final size:47
Alignment explanation
Indices: 92892685--92893004 Score: 508
Period size: 47 Copynumber: 6.9 Consensus size: 47
92892675 TTTCGGGGAT
92892685 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
92892732 ATGG-CGATGTGATGAATGTGAAAGTGTATATATGTGAT-AGGCCTA
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
92892777 AT-GCCGATGTGATG-ATGTGAAAGTGTATATATATGTGATAAGGCCTA
1 ATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTA
92892824 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
92892871 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
* * *
92892918 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA-CAGGGCGA
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
* * * * *
92892964 GT-GCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
92893005 TCCCGAAGGG
Statistics
Matches: 257, Mismatches: 9, Indels: 15
0.91 0.03 0.05
Matches are distributed among these distances:
44 12 0.05
45 50 0.19
46 54 0.21
47 118 0.46
48 12 0.05
49 11 0.04
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
Found at i:92892871 original size:139 final size:140
Alignment explanation
Indices: 92892685--92893004 Score: 506
Period size: 139 Copynumber: 2.3 Consensus size: 140
92892675 TTTCGGGGAT
92892685 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG-CGATGTGATGAAT
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
92892749 GTGAAAGTGTATATATGTGAT-AGGCCTAAT-GCCGATGTGATG-ATGTGAAAGTGTATATATAT
66 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATAT
*
92892811 GTGATAAGGCCTA
129 GTGA-AAGGCCGA
92892824 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
92892889 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
66 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
* *
92892954 GACAGGGCGA
131 GAAAGGCCGA
* * * * *
92892964 GT-GCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
92893005 TCCCGAAGGG
Statistics
Matches: 169, Mismatches: 8, Indels: 8
0.91 0.04 0.04
Matches are distributed among these distances:
139 86 0.51
140 40 0.24
141 20 0.12
142 12 0.07
143 11 0.07
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (140 bp):
ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT
GAAAGGCCGA
Found at i:92893177 original size:36 final size:37
Alignment explanation
Indices: 92893123--92893199 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
92893113 CCGAGCTCTA
* *
92893123 AAGA-CCGATGACTACGTGTGG-GATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
92893158 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
92893195 AAGAC
1 AAGAC
92893200 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
35 4 0.11
36 15 0.41
37 18 0.49
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:92894482 original size:40 final size:40
Alignment explanation
Indices: 92894406--92894630 Score: 328
Period size: 40 Copynumber: 5.7 Consensus size: 40
92894396 TGAGAATGAG
92894406 AGTGATATATCCGGGCTAAGT-CCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
92894445 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
92894485 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
92894525 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * * * *
92894565 AGTAATATATCCGTGCTAA-ACCTCGAAGAGAATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCC-CGAGGAGCATTCGTGCT
* * *
92894605 GGTGTTATATCCGGGCTAGGTCCCGA
1 AGTGATATATCCGGGCTAAGTCCCGA
92894631 AGAGTAATCA
Statistics
Matches: 168, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 22 0.13
40 144 0.86
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:92898061 original size:25 final size:25
Alignment explanation
Indices: 92898033--92898111 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
92898023 GTAATGACCG
92898033 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
92898058 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
92898080 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
92898105 ATGTGAT
1 ATGTGAT
92898112 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:92898083 original size:47 final size:47
Alignment explanation
Indices: 92898024--92898351 Score: 548
Period size: 47 Copynumber: 6.9 Consensus size: 47
92898014 TAGTATGGCG
*
92898024 TAATGACCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
92898071 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
92898118 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
92898167 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
92898214 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * *
92898261 TAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
92898308 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
92898352 TCCCGAAGGG
Statistics
Matches: 266, Mismatches: 13, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 219 0.82
49 47 0.18
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:92898282 original size:143 final size:141
Alignment explanation
Indices: 92898024--92898351 Score: 557
Period size: 143 Copynumber: 2.3 Consensus size: 141
92898014 TAGTATGGCG
*
92898024 TAATGACCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
92898089 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
66 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTATATAT
*
92898154 ATGTGATAAGGCC
129 ATGTGACAAGGCC
92898167 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
92898232 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATAT
66 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATAT
*
92898297 GTGACAGGGCC
131 GTGACAAGGCC
* * * * * *
92898308 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
92898352 TCCCGAAGGG
Statistics
Matches: 176, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
141 57 0.32
143 119 0.68
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (141 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATAT
GTGACAAGGCC
Found at i:92898526 original size:37 final size:37
Alignment explanation
Indices: 92898470--92898547 Score: 120
Period size: 37 Copynumber: 2.1 Consensus size: 37
92898460 CCGAGCTCTA
* * *
92898470 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
92898507 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
92898544 AAGA
1 AAGA
92898548 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:92899817 original size:40 final size:40
Alignment explanation
Indices: 92899761--92899985 Score: 328
Period size: 40 Copynumber: 5.7 Consensus size: 40
92899751 GAGAATTGAG
*
92899761 AGTGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
92899801 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
92899841 AGTGATATATCCGGGCTAAGT-CCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
92899880 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * * *
92899920 AGTAATATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCC-CGAGGAGCATTCGTGCT
* * *
92899960 GGTGTTATATCCGGGCTAGGTCCCGA
1 AGTGATATATCCGGGCTAAGTCCCGA
92899986 AGAGTAATCA
Statistics
Matches: 168, Mismatches: 14, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
39 39 0.23
40 127 0.76
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:92899893 original size:79 final size:79
Alignment explanation
Indices: 92899761--92899989 Score: 332
Period size: 79 Copynumber: 2.9 Consensus size: 79
92899751 GAGAATTGAG
*
92899761 AGTGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGT-CCGAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
*
92899826 AGGAGCATTCGTGCT
65 AAGAGCATTCGTGCT
* *
92899841 AGTGATATATCCGGGCTAAGTCCGAGGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGA
1 AGTGATATATCCGGGCTAAGTCCGAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGA
92899906 AGAGCATTCGTGCT
66 AGAGCATTCGTGCT
* * ** * * * *
92899920 AGTAATATATCCGTGCTAAACCTCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCG
1 AGTGATATATCCGGGCTAAGTC-CGAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
92899985 AAGAG
65 AAGAG
92899990 TAATCATGCT
Statistics
Matches: 134, Mismatches: 14, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
79 73 0.54
80 61 0.46
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (79 bp):
AGTGATATATCCGGGCTAAGTCCGAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGA
AGAGCATTCGTGCT
Found at i:92899972 original size:119 final size:119
Alignment explanation
Indices: 92899761--92899982 Score: 329
Period size: 119 Copynumber: 1.9 Consensus size: 119
92899751 GAGAATTGAG
* * * *
92899761 AGTGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTAATATATCCGGGCTAAGACCCG
*
92899826 AGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCGAGGAGCATTCGTGCT
66 AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCGAGGAGCATTCGTGCT
* * *
92899880 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATATATCCGTGCTAA-ACCTC
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTAATATATCCGGGCTAAGACC-C
* * *
92899944 GAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCC
65 GAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCC
92899983 CGAAGAGTAA
Statistics
Matches: 91, Mismatches: 11, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
118 2 0.02
119 89 0.98
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (119 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTAATATATCCGGGCTAAGACCCG
AAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCGAGGAGCATTCGTGCT
Found at i:92904013 original size:16 final size:16
Alignment explanation
Indices: 92903992--92904024 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
92903982 ACAAAAGTTC
92903992 ATCTCATTTCATACCA
1 ATCTCATTTCATACCA
92904008 ATCTCATTTCATACCA
1 ATCTCATTTCATACCA
92904024 A
1 A
92904025 CAATGTGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.33, C:0.30, G:0.00, T:0.36
Consensus pattern (16 bp):
ATCTCATTTCATACCA
Found at i:92909873 original size:93 final size:93
Alignment explanation
Indices: 92909766--92909936 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
92909756 GCCCCTAAGT
* *
92909766 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
92909831 CGAGTTTGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
92909859 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGTATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
92909924 CGAGTTCGGATGC
66 CGAGTTCGGATGC
92909937 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:92909933 original size:46 final size:46
Alignment explanation
Indices: 92909761--92909933 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
92909751 AACCCGCCCC
* * * *
92909761 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGTATCCA
* * * *
92909807 TAAGTGAACTCGGACTCAACTCAACGAGTTTGG--ATGCCTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGTA--TCCA
* *
92909853 TCTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGTATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGTATCCA
*
92909900 TAGGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
92909934 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
44 3 0.03
45 1 0.01
46 63 0.61
47 30 0.29
48 2 0.02
49 5 0.05
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGTATCCA
Found at i:92912058 original size:23 final size:23
Alignment explanation
Indices: 92912032--92912080 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
92912022 ACAGAATTTG
92912032 CCACAAAGGCCATA-AAGAATACA
1 CCACAAAGGCCATACAA-AATACA
* *
92912055 CCACATAGGCTATACAAAATACA
1 CCACAAAGGCCATACAAAATACA
92912078 CCA
1 CCA
92912081 TAAATGATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 21 0.91
24 2 0.09
ACGTcount: A:0.49, C:0.29, G:0.10, T:0.12
Consensus pattern (23 bp):
CCACAAAGGCCATACAAAATACA
Found at i:92912420 original size:40 final size:40
Alignment explanation
Indices: 92912376--92912451 Score: 143
Period size: 40 Copynumber: 1.9 Consensus size: 40
92912366 TATCGCACAA
*
92912376 TGCCATGAGTCTCGGCCACATGGTCATTGATCGCCTTCAG
1 TGCCATGAGTCTCGACCACATGGTCATTGATCGCCTTCAG
92912416 TGCCATGAGTCTCGACCACATGGTCATTGATCGCCT
1 TGCCATGAGTCTCGACCACATGGTCATTGATCGCCT
92912452 CCAGATGTAC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.18, C:0.30, G:0.24, T:0.28
Consensus pattern (40 bp):
TGCCATGAGTCTCGACCACATGGTCATTGATCGCCTTCAG
Found at i:92927149 original size:23 final size:23
Alignment explanation
Indices: 92927119--92927166 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
92927109 GTGAGGAAGA
92927119 AGGAAATTTTTGCTTAAATTTTC
1 AGGAAATTTTTGCTTAAATTTTC
92927142 AGGAAATTTTTGCTTAAATTTTC
1 AGGAAATTTTTGCTTAAATTTTC
92927165 AG
1 AG
92927167 CTTAGGTGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (23 bp):
AGGAAATTTTTGCTTAAATTTTC
Found at i:92928976 original size:39 final size:39
Alignment explanation
Indices: 92928932--92929059 Score: 193
Period size: 39 Copynumber: 3.3 Consensus size: 39
92928922 TATGAGATTG
92928932 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* *
92928971 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTAGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* * * **
92929010 AATATATTCGGACTTGAGGTCCGCAGGCTACGTGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
92929049 AAAATATCCGG
1 AAAATATCCGG
92929060 GTTAAAGACC
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 78 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (39 bp):
AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
Found at i:92929073 original size:78 final size:77
Alignment explanation
Indices: 92928931--92929095 Score: 199
Period size: 78 Copynumber: 2.1 Consensus size: 77
92928921 GTATGAGATT
* * * *
92928931 GAAA-ATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAAAAATATCCGGACATGAGATCCGC
1 GAAATATATTCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACATAAGACCCGC
*
92928995 AGGCTATATGCTA
66 AGGCT-TACGCTA
* * **
92929008 GAAATATATTCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAAAATATCCGG-GTTAAAGACCCG
1 GAAATATATTCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACAT-AAGACCCG
92929072 CAGGCTTACGCTA
65 CAGGCTTACGCTA
* *
92929085 GTAATGTATTC
1 GAAATATATTC
92929096 CGAGCTCTAA
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
77 20 0.27
78 55 0.73
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (77 bp):
GAAATATATTCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACATAAGACCCGC
AGGCTTACGCTA
Found at i:92934672 original size:13 final size:13
Alignment explanation
Indices: 92934654--92934680 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
92934644 ACTAGGTCTA
92934654 AGTCAAGGTACAT
1 AGTCAAGGTACAT
92934667 AGTCAAGGTACAT
1 AGTCAAGGTACAT
92934680 A
1 A
92934681 TATAGATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.22, T:0.22
Consensus pattern (13 bp):
AGTCAAGGTACAT
Found at i:92941669 original size:28 final size:28
Alignment explanation
Indices: 92941626--92941728 Score: 116
Period size: 28 Copynumber: 3.7 Consensus size: 28
92941616 TGGCCGCTTT
* * *
92941626 AGGCCCAATCTCATTCATATGGCTCATT
1 AGGCCCAATCACATTCATATGGCCCATC
* **
92941654 GGGCCTGATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* * *
92941682 AGGCCCAATCACTTTCATATGGACCGTC
1 AGGCCCAATCACATTCATATGGCCCATC
*
92941710 AGGCCCAATCACTTTCATA
1 AGGCCCAATCACATTCATA
92941729 GTCATGCAAT
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 63 1.00
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:92946853 original size:7 final size:7
Alignment explanation
Indices: 92946841--92946875 Score: 70
Period size: 7 Copynumber: 5.0 Consensus size: 7
92946831 TACTACATAG
92946841 TTTTTTA
1 TTTTTTA
92946848 TTTTTTA
1 TTTTTTA
92946855 TTTTTTA
1 TTTTTTA
92946862 TTTTTTA
1 TTTTTTA
92946869 TTTTTTA
1 TTTTTTA
92946876 GAACAAGTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (7 bp):
TTTTTTA
Found at i:92949867 original size:93 final size:93
Alignment explanation
Indices: 92949755--92949926 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
92949745 CGCCATAAGT
*
92949755 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
92949819 ACGAGCTCGGATGCCTAGTTACATCTCTC
65 ACGAGCTCGGATGCCTAGTTACATCTCTC
*
92949848 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
92949913 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
92949927 CAAACATCCT
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:92949922 original size:46 final size:45
Alignment explanation
Indices: 92949747--92949921 Score: 210
Period size: 46 Copynumber: 3.8 Consensus size: 45
92949737 ATGTAACCCG
*
92949747 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGCAT
*
92949793 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** *
92949839 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
*
92949886 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
92949922 ATGCCCAAAC
Statistics
Matches: 110, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 67 0.61
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:92949941 original size:46 final size:46
Alignment explanation
Indices: 92949752--92949941 Score: 149
Period size: 46 Copynumber: 4.1 Consensus size: 46
92949742 ACCCGCCATA
* * * * * *
92949752 AGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTC-GG-ATGCCCATACATCCT
* *
92949798 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TACATC-CT
* * * * *
92949847 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATACATCCT
*
92949891 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
92949937 AGTGA
1 AGTGA
92949942 CATGTCACTT
Statistics
Matches: 114, Mismatches: 19, Indels: 22
0.74 0.12 0.14
Matches are distributed among these distances:
44 11 0.10
45 2 0.02
46 66 0.58
47 31 0.27
49 4 0.04
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
Found at i:92952352 original size:30 final size:30
Alignment explanation
Indices: 92952308--92952376 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 30
92952298 CAAAGATAAC
*
92952308 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCAGAATAAAGAAATCCAAGATA
* * *
92952337 GAGAAACCCAGAATAAAGAGATCCAGGATA
1 AAGAAACCCAGAATAAAGAAATCCAAGATA
92952367 AAGAAACCCA
1 AAGAAACCCA
92952377 AGATACGATA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 7 0.21
30 27 0.79
ACGTcount: A:0.57, C:0.17, G:0.17, T:0.09
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATA
Found at i:92952381 original size:15 final size:15
Alignment explanation
Indices: 92952319--92952381 Score: 65
Period size: 15 Copynumber: 4.2 Consensus size: 15
92952309 AGAAAACCGA
*
92952319 ATAAAGAAATCCAAG
1 ATAAAGAAACCCAAG
*
92952334 ATAGAGAAACCC-AG
1 ATAAAGAAACCCAAG
* * *
92952348 AATAAAGAGATCCAGG
1 -ATAAAGAAACCCAAG
92952364 ATAAAGAAACCCAAG
1 ATAAAGAAACCCAAG
92952379 ATA
1 ATA
92952382 CGATACTATG
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
14 2 0.05
15 34 0.92
16 1 0.03
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.11
Consensus pattern (15 bp):
ATAAAGAAACCCAAG
Found at i:92958905 original size:46 final size:45
Alignment explanation
Indices: 92958838--92959012 Score: 181
Period size: 46 Copynumber: 3.8 Consensus size: 45
92958828 TGTAACCCGC
92958838 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGTAT
* * *
92958884 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGT-T
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGTAT
* *** * * * * *
92958930 ACATCTCTCGAACTCAGACTGAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGTAT
*
92958977 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
92959013 ATGCCCAAAC
Statistics
Matches: 103, Mismatches: 21, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
45 1 0.01
46 68 0.66
47 32 0.31
48 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGTAT
Found at i:92958979 original size:93 final size:93
Alignment explanation
Indices: 92958846--92959017 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
92958836 GCCCATAAGT
* * * *
92958846 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
92958911 TGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
92958939 GAACTCAGACTGAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
92959004 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
92959018 CAAACATCCT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:92959032 original size:46 final size:46
Alignment explanation
Indices: 92958843--92959032 Score: 122
Period size: 46 Copynumber: 4.1 Consensus size: 46
92958833 CCCGCCCATA
* ** ** *
92958843 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGT--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCC-T
* * *
92958888 AAGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TACATC-CT
* * * * * * *
92958938 --CGAACTCAGACTGAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATACATCCT
*
92958982 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
92959028 AGTGA
1 AGTGA
92959033 CATGTCACTT
Statistics
Matches: 108, Mismatches: 25, Indels: 22
0.70 0.16 0.14
Matches are distributed among these distances:
44 8 0.07
46 62 0.57
47 28 0.26
48 1 0.01
49 4 0.04
50 4 0.04
51 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
Found at i:92961527 original size:40 final size:40
Alignment explanation
Indices: 92961432--92961649 Score: 284
Period size: 40 Copynumber: 5.5 Consensus size: 40
92961422 TGGATGATAA
*
92961432 CCGGGCTAAGTCCCGAAGGCATTT-TGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TAT
* *
92961473 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
92961513 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
92961553 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
92961593 CCGGGCTATGTCCCGAATGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
92961632 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
92961650 TACTTGGCTT
Statistics
Matches: 160, Mismatches: 14, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
38 14 0.09
39 15 0.09
40 103 0.64
41 24 0.15
42 4 0.03
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:92975182 original size:36 final size:36
Alignment explanation
Indices: 92975115--92975204 Score: 119
Period size: 36 Copynumber: 2.5 Consensus size: 36
92975105 TTAGCTCTTA
*
92975115 TGAGCATCTGGCGTG-TTTGAAGGGATTGGCTCATG
1 TGAGCATCTGGTGTGTTTTGAAGGGATTGGCTCATG
* * *
92975150 TGAGCATATGGTGTGTTTTGGAGGGATTGGCTCGTG
1 TGAGCATCTGGTGTGTTTTGAAGGGATTGGCTCATG
* *
92975186 TAAGCTTCTGGTGTGTTTT
1 TGAGCATCTGGTGTGTTTT
92975205 TGGTTGGATT
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
35 13 0.28
36 34 0.72
ACGTcount: A:0.14, C:0.11, G:0.37, T:0.38
Consensus pattern (36 bp):
TGAGCATCTGGTGTGTTTTGAAGGGATTGGCTCATG
Found at i:92978923 original size:22 final size:22
Alignment explanation
Indices: 92978898--92978995 Score: 87
Period size: 22 Copynumber: 4.4 Consensus size: 22
92978888 GTCATGGTCG
*
92978898 GTAAGCTCCT-TTGAGCTGAATA
1 GTAAGCTCCTAATGAGCTGAA-A
*
92978920 GTAAGCT-CTATTGAGCTGAAA
1 GTAAGCTCCTAATGAGCTGAAA
*
92978941 CGATAAGCT-CTAATGAGCTGAAC
1 -G-TAAGCTCCTAATGAGCTGAAA
92978964 GATAAGCTCC-AATGAGCTGAAATA
1 G-TAAGCTCCTAATGAGCTG-AA-A
92978988 GTAAGCTC
1 GTAAGCTC
92978996 TTACGAGCTA
Statistics
Matches: 67, Mismatches: 3, Indels: 11
0.83 0.04 0.14
Matches are distributed among these distances:
21 3 0.04
22 35 0.52
23 28 0.42
24 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (22 bp):
GTAAGCTCCTAATGAGCTGAAA
Found at i:92978951 original size:23 final size:23
Alignment explanation
Indices: 92978909--92978985 Score: 106
Period size: 22 Copynumber: 3.4 Consensus size: 23
92978899 TAAGCTCCTT
*
92978909 TGAGCTGAATA-G-TAAGCTCTAT
1 TGAGCTGAA-ACGATAAGCTCTAA
92978931 TGAGCTGAAACGATAAGCTCTAA
1 TGAGCTGAAACGATAAGCTCTAA
*
92978954 TGAGCTG-AACGATAAGCTCCAA
1 TGAGCTGAAACGATAAGCTCTAA
92978976 TGAGCTGAAA
1 TGAGCTGAAA
92978986 TAGTAAGCTC
Statistics
Matches: 50, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
21 1 0.02
22 31 0.62
23 18 0.36
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.23
Consensus pattern (23 bp):
TGAGCTGAAACGATAAGCTCTAA
Found at i:92979004 original size:23 final size:23
Alignment explanation
Indices: 92978909--92978996 Score: 101
Period size: 22 Copynumber: 3.9 Consensus size: 23
92978899 TAAGCTCCTT
*
92978909 TGAGCTG-AATAGTAAGCTCTAT
1 TGAGCTGAAATAGTAAGCTCTAA
*
92978931 TGAGCTGAAA-CGATAAGCTCTAA
1 TGAGCTGAAATAG-TAAGCTCTAA
** *
92978954 TGAGCTGAACGA-TAAGCTCCAA
1 TGAGCTGAAATAGTAAGCTCTAA
92978976 TGAGCTGAAATAGTAAGCTCT
1 TGAGCTGAAATAGTAAGCTCT
92978997 TACGAGCTAT
Statistics
Matches: 54, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
22 27 0.50
23 27 0.50
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (23 bp):
TGAGCTGAAATAGTAAGCTCTAA
Found at i:92981293 original size:22 final size:22
Alignment explanation
Indices: 92981268--92981313 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
92981258 TTGTTGATAG
92981268 ATAAACAACTTTTGTAAAGTGA
1 ATAAACAACTTTTGTAAAGTGA
92981290 ATAAACAACTTTTGTAAAGTGA
1 ATAAACAACTTTTGTAAAGTGA
92981312 AT
1 AT
92981314 TTTGATGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.46, C:0.09, G:0.13, T:0.33
Consensus pattern (22 bp):
ATAAACAACTTTTGTAAAGTGA
Found at i:92982053 original size:64 final size:63
Alignment explanation
Indices: 92981948--92982075 Score: 186
Period size: 64 Copynumber: 2.0 Consensus size: 63
92981938 CGAGCATCCC
* *
92981948 GATCGGTAGTGATCCTGCATGTGTTGCGTACATACCACAGCTCGTTT-TGAGCGTCCTATTATAT
1 GATCGGTAGTGATCCTGCATGTGTTACGGACATACCACAGCTC-TTTATGAGCGTCCTATT-TAT
* * *
92982012 GATCGGTAGTGATCTTGCATGTGTTACGGACATATCGCAGCTCTTTATGAGCGTCCTATTTAT
1 GATCGGTAGTGATCCTGCATGTGTTACGGACATACCACAGCTCTTTATGAGCGTCCTATTTAT
92982075 G
1 G
92982076 GATCTCTGGA
Statistics
Matches: 58, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
63 7 0.12
64 51 0.88
ACGTcount: A:0.20, C:0.20, G:0.24, T:0.35
Consensus pattern (63 bp):
GATCGGTAGTGATCCTGCATGTGTTACGGACATACCACAGCTCTTTATGAGCGTCCTATTTAT
Found at i:92986726 original size:26 final size:26
Alignment explanation
Indices: 92986695--92986769 Score: 89
Period size: 26 Copynumber: 2.8 Consensus size: 26
92986685 TTATCATCCC
* *
92986695 AATTTTACCCTAA-TAAATTTTTTGAT
1 AATTTTACCCCAAGTAAA-ATTTTGAT
92986721 AATTTTACCCCCAAGTAAAATTTTGAT
1 AATTTTA-CCCCAAGTAAAATTTTGAT
* *
92986748 GATTTTACCCCCAGTAAAATTT
1 AATTTTACCCCAAGTAAAATTT
92986770 CGAGAAAATT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
26 21 0.49
27 18 0.42
28 4 0.09
ACGTcount: A:0.35, C:0.17, G:0.07, T:0.41
Consensus pattern (26 bp):
AATTTTACCCCAAGTAAAATTTTGAT
Found at i:92986752 original size:27 final size:26
Alignment explanation
Indices: 92986714--92986769 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 26
92986704 CTAATAAATT
92986714 TTTTGATAATTTTACCCCCAAGTAAAA
1 TTTTGATAATTTTACCCCC-AGTAAAA
*
92986741 TTTTGATGATTTTACCCCCAGTAAAA
1 TTTTGATAATTTTACCCCCAGTAAAA
92986767 TTT
1 TTT
92986770 CGAGAAAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 10 0.36
27 18 0.64
ACGTcount: A:0.32, C:0.18, G:0.09, T:0.41
Consensus pattern (26 bp):
TTTTGATAATTTTACCCCCAGTAAAA
Found at i:92986891 original size:6 final size:6
Alignment explanation
Indices: 92986880--92986914 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
92986870 AAGATTGCAA
*
92986880 ATTTTC ATTTTC ATTTTC ATTTTC ATTTCC ATTTT
1 ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC ATTTT
92986915 TGGAAACCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.17, C:0.17, G:0.00, T:0.66
Consensus pattern (6 bp):
ATTTTC
Found at i:92989601 original size:17 final size:17
Alignment explanation
Indices: 92989579--92989611 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
92989569 TAAAATTAGG
92989579 TTGAGAAATTTATTTAA
1 TTGAGAAATTTATTTAA
*
92989596 TTGAGAATTTTATTTA
1 TTGAGAAATTTATTTA
92989612 TTTAAATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (17 bp):
TTGAGAAATTTATTTAA
Found at i:92994162 original size:68 final size:64
Alignment explanation
Indices: 92993956--92994206 Score: 172
Period size: 68 Copynumber: 3.8 Consensus size: 64
92993946 ATATAGGTCG
* * ** * * *
92993956 GCTCTCTTGTACACATGGTGAACACTCAATACCACCCATGTGACCTAGCCA-ATTTAT-CTCGTA
1 GCTCTCTTGTACACATGATGTACACTCAGCACCACACATGTGACCTAGCTACATATATCCT-GTA
** * * * *
92994019 GCTCTCTTGTTTACATGGTGT-C-CTTCACCTGGAACCACGCATGCGACCTAGCTACATATATCC
1 GCTCTCTTGTACACATGATGTACAC-TCA----GCACCACACATGTGACCTAGCTACATATATCC
92994082 TGTA
61 TGTA
* * * *
92994086 GCTCTCTTGT-CTACATGGTGTACACAT-AGTATCACCCATGTGACCTAGCTACATCATAATGTC
1 GCTCTCTTGTAC-ACATGATGTACAC-TCAGCACCACACATGTGACCTAGCTACAT-AT-A--TC
*
92994149 TTGTA
60 CTGTA
* *
92994154 GCTCTCTTGTACACATGATGTGCACTCAGCACCATACATGTGACCTAGCTACA
1 GCTCTCTTGTACACATGATGTACACTCAGCACCACACATGTGACCTAGCTACA
92994207 CACTATCTGT
Statistics
Matches: 150, Mismatches: 22, Indels: 27
0.75 0.11 0.14
Matches are distributed among these distances:
61 1 0.01
62 4 0.03
63 18 0.12
64 22 0.15
65 2 0.01
66 19 0.13
67 28 0.19
68 53 0.35
69 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (64 bp):
GCTCTCTTGTACACATGATGTACACTCAGCACCACACATGTGACCTAGCTACATATATCCTGTA
Found at i:92994908 original size:30 final size:30
Alignment explanation
Indices: 92994874--92994934 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
92994864 TCCTTAACTC
92994874 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
92994904 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
92994934 A
1 A
92994935 GCCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:92998158 original size:43 final size:43
Alignment explanation
Indices: 92998108--92998194 Score: 117
Period size: 43 Copynumber: 2.0 Consensus size: 43
92998098 TTATGATTCC
*
92998108 GATATGTGTTTACGA-GTAAGACC-CTGTCTGGGATAG-TGGCATT
1 GATATGTGGTTAC-ATGTAAGACCAC-GTCTGGGAT-GTTGGCATT
92998151 GATATGTGGTTACATGTAAGACCACGTCTGGGATGTTGGCATT
1 GATATGTGGTTACATGTAAGACCACGTCTGGGATGTTGGCATT
92998194 G
1 G
92998195 TACTATTTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
42 2 0.05
43 37 0.93
44 1 0.03
ACGTcount: A:0.23, C:0.14, G:0.31, T:0.32
Consensus pattern (43 bp):
GATATGTGGTTACATGTAAGACCACGTCTGGGATGTTGGCATT
Found at i:93003928 original size:18 final size:18
Alignment explanation
Indices: 93003905--93003945 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
93003895 TGCTATAGGC
93003905 TAAATTGAAGTGGCCAAA
1 TAAATTGAAGTGGCCAAA
93003923 TAAATTGAAGTGGCCAAA
1 TAAATTGAAGTGGCCAAA
93003941 TAAAT
1 TAAAT
93003946 AGGAGTGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.46, C:0.10, G:0.20, T:0.24
Consensus pattern (18 bp):
TAAATTGAAGTGGCCAAA
Found at i:93003952 original size:18 final size:18
Alignment explanation
Indices: 93003905--93003952 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
93003895 TGCTATAGGC
*
93003905 TAAATTGAAGTGGCCAAA
1 TAAATAGAAGTGGCCAAA
*
93003923 TAAATTGAAGTGGCCAAA
1 TAAATAGAAGTGGCCAAA
*
93003941 TAAATAGGAGTG
1 TAAATAGAAGTG
93003953 AAAAATAGGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.44, C:0.08, G:0.25, T:0.23
Consensus pattern (18 bp):
TAAATAGAAGTGGCCAAA
Found at i:93004101 original size:26 final size:26
Alignment explanation
Indices: 93004072--93004153 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
93004062 TGATAAAAAT
*
93004072 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
93004098 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
93004124 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
93004150 TGAT
1 TGAT
93004154 GGGCATGTCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:93005786 original size:27 final size:27
Alignment explanation
Indices: 93005756--93005829 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 27
93005746 AGCATCCTGT
*
93005756 TGGCTATGCCACAATTATCTGATCTGG
1 TGGCTCTGCCACAATTATCTGATCTGG
*
93005783 TGGCTCTGCCAC-ATATATCTGTTCTGG
1 TGGCTCTGCCACAAT-TATCTGATCTGG
93005810 TGGCTCTGCCACAA-TATCTG
1 TGGCTCTGCCACAATTATCTG
93005830 TAACGCCTCA
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
26 8 0.19
27 34 0.79
28 1 0.02
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.34
Consensus pattern (27 bp):
TGGCTCTGCCACAATTATCTGATCTGG
Found at i:93009827 original size:12 final size:13
Alignment explanation
Indices: 93009799--93009831 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
93009789 TTATTTCTTT
93009799 TTCTCCATCTACC
1 TTCTCCATCTACC
*
93009812 TTCTCC-TCTTCC
1 TTCTCCATCTACC
93009824 TTCTCCAT
1 TTCTCCAT
93009832 AGCCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:93010930 original size:28 final size:28
Alignment explanation
Indices: 93010898--93010962 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 28
93010888 ATTTACTAGA
* *
93010898 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATATATGCAAAATGACCATT
* * **
93010926 ATACCCCTATATGTGTAAAATGACTTTT
1 ATACCCCTATATATGCAAAATGACCATT
93010954 ATACCCCTA
1 ATACCCCTA
93010963 GGGTTAATTT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.34, C:0.25, G:0.08, T:0.34
Consensus pattern (28 bp):
ATACCCCTATATATGCAAAATGACCATT
Found at i:93011109 original size:28 final size:27
Alignment explanation
Indices: 93011068--93011147 Score: 99
Period size: 27 Copynumber: 2.9 Consensus size: 27
93011058 AGGAAGCGTC
93011068 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* **
93011096 CTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
93011123 CTGGTGGCACTGCCACAAAATATCT
1 CTGGTGGCACTGCCAC-AAATATCT
93011148 ATATCTAGTG
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
27 23 0.52
28 21 0.48
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.31
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:93018061 original size:28 final size:28
Alignment explanation
Indices: 93018029--93018093 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
93018019 ATTAACTAGA
*
93018029 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* **
93018057 ATACCCCTATGTGTGCAAAATGACTTTT
1 ATACCCCTATGTATGCAAAATGACCATT
93018085 ATACCCCTA
1 ATACCCCTA
93018094 GGGTTAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.32, C:0.26, G:0.09, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:93018240 original size:28 final size:27
Alignment explanation
Indices: 93018199--93018278 Score: 99
Period size: 27 Copynumber: 2.9 Consensus size: 27
93018189 AGGAAGCGTC
93018199 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* **
93018227 CTGGTGGCCCTGCCACGTATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
93018254 CTGGTGGCACTGCCACAAAATATCT
1 CTGGTGGCACTGCCAC-AAATATCT
93018279 ATATATAGTG
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
27 23 0.52
28 21 0.48
ACGTcount: A:0.20, C:0.26, G:0.23, T:0.31
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:93018407 original size:14 final size:14
Alignment explanation
Indices: 93018388--93018417 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
93018378 TGAAAGGATG
93018388 GTATGGGGGTGTAT
1 GTATGGGGGTGTAT
93018402 GTATGGGGGTGTAT
1 GTATGGGGGTGTAT
93018416 GT
1 GT
93018418 GGTTGGATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.00, G:0.50, T:0.37
Consensus pattern (14 bp):
GTATGGGGGTGTAT
Found at i:93021591 original size:46 final size:46
Alignment explanation
Indices: 93021541--93021716 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
93021531 TGGTTGAGCA
93021541 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*** * *
93021587 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
* *
93021634 TCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
93021680 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
93021717 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:93021697 original size:93 final size:93
Alignment explanation
Indices: 93021538--93021708 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
93021528 GGATGGTTGA
* *
93021538 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
93021603 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
93021631 GCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
93021696 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
93021709 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:93036753 original size:18 final size:19
Alignment explanation
Indices: 93036730--93036768 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
93036720 ATATTTTTCG
*
93036730 AAAAATAATTT-TACAAAA
1 AAAAATAATTTGAACAAAA
*
93036748 AAAAATTATTTGAACAAAA
1 AAAAATAATTTGAACAAAA
93036767 AA
1 AA
93036769 TTTTATTTCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.67, C:0.05, G:0.03, T:0.26
Consensus pattern (19 bp):
AAAAATAATTTGAACAAAA
Found at i:93048495 original size:21 final size:19
Alignment explanation
Indices: 93048469--93048508 Score: 53
Period size: 21 Copynumber: 2.0 Consensus size: 19
93048459 TTTCCTCAAT
93048469 GTAAAAATAAAAATAATCATA
1 GTAAAAA-AAAAAT-ATCATA
*
93048490 GTAAAAACAAAATATCATA
1 GTAAAAAAAAAATATCATA
93048509 AGAGAGGAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
20 5 0.28
21 7 0.39
ACGTcount: A:0.65, C:0.07, G:0.05, T:0.23
Consensus pattern (19 bp):
GTAAAAAAAAAATATCATA
Found at i:93050953 original size:40 final size:40
Alignment explanation
Indices: 93050869--93051093 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
93050859 TTGAATGATG
* * * *
93050869 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
93050909 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
93050949 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
93050988 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
93051028 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
93051069 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
93051094 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:93051115 original size:119 final size:119
Alignment explanation
Indices: 93050869--93051126 Score: 283
Period size: 119 Copynumber: 2.2 Consensus size: 119
93050859 TTGAATGATG
* *
93050869 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ** *
93050934 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
* * * **
93050988 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
93051051 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAAA
* *
93051108 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
93051127 TACGTGATTT
Statistics
Matches: 117, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 83 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
Found at i:93058975 original size:40 final size:40
Alignment explanation
Indices: 93058891--93059115 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
93058881 TTGAATGATG
* * * *
93058891 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
93058931 TCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
93058971 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
93059010 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
93059050 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
93059091 -CCGGGTTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
93059116 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 16, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
39 33 0.20
40 121 0.74
41 10 0.06
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:93059133 original size:80 final size:80
Alignment explanation
Indices: 93058891--93059148 Score: 233
Period size: 80 Copynumber: 3.2 Consensus size: 80
93058881 TTGAATGATG
* * * * * * ** *
93058891 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGTAT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
** *
93058954 TTGTGCGAGAT-ACTAAT
64 TTGAACGAG-TGACTAAA
*
93058971 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
** *
93059035 GTGCGAGTTACTAAA
66 GAACGAGTGACTAAA
* *
93059050 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGTTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATT
*
93059114 TGAACGAG-GAGCTATA
65 TGAACGAGTGA-CTAAA
* *
93059130 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
93059149 TACGTGATTT
Statistics
Matches: 154, Mismatches: 18, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.01
79 73 0.47
80 77 0.50
81 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
GAACGAGTGACTAAA
Found at i:93061254 original size:48 final size:47
Alignment explanation
Indices: 93061195--93061331 Score: 161
Period size: 48 Copynumber: 2.9 Consensus size: 47
93061185 GCCACATCAT
* **
93061195 GAGAGCCAGTGTAAGACTATGTCTAGGACATGGGTTCGGCATTGAGAC
1 GAGAGCCAGTGTAAGAC-ATGTCTGGGACATGGCATCGGCATTGAGAC
* * * * *
93061243 GAGAGCTAGTGTAAGACATGTCTGGGAC-TTGCATCGGCCTCGAGAT
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCATTGAGAC
93061289 GTA-AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
1 G-AGAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGCATT
93061332 ATACCCTGTG
Statistics
Matches: 74, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
46 25 0.34
47 23 0.31
48 26 0.35
ACGTcount: A:0.26, C:0.19, G:0.32, T:0.23
Consensus pattern (47 bp):
GAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCATTGAGAC
Found at i:93061318 original size:94 final size:94
Alignment explanation
Indices: 93061153--93061331 Score: 236
Period size: 94 Copynumber: 1.9 Consensus size: 94
93061143 TTGATTGTAT
* * *
93061153 GCTAGTGTAAGACATGTTTGAGACATGCATTGGCCACATCATGAGAGCCAGTGTAAGACTATGTC
1 GCTAGTGTAAGACATGTCTGAGACATGCATCGGCCACATCATGAGAGCCAGTGTAAGACCATGTC
**
93061218 TAGGACATGGGTTCGGCATTGAGACGAGA
66 TAGGACATGGCATCGGCATTGAGACGAGA
* * * *
93061247 GCTAGTGTAAGACATGTCTGGGACTTGCATCGGCCTCGA-GATGTA-AGCCAGTGTAAGACCATG
1 GCTAGTGTAAGACATGTCTGAGACATGCATCGGCCAC-ATCATG-AGAGCCAGTGTAAGACCATG
*
93061310 TCTGGGACATGGCATCGGCATT
64 TCTAGGACATGGCATCGGCATT
93061332 ATACCCTGTG
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
94 71 0.97
95 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGAGACATGCATCGGCCACATCATGAGAGCCAGTGTAAGACCATGTC
TAGGACATGGCATCGGCATTGAGACGAGA
Found at i:93075860 original size:15 final size:15
Alignment explanation
Indices: 93075836--93075865 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
93075826 CTCCGACTCT
93075836 TTGGTCTTAAGAATG
1 TTGGTCTTAAGAATG
*
93075851 TTGGTTTTAAGAATG
1 TTGGTCTTAAGAATG
93075866 ATCGATTGCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.03, G:0.27, T:0.43
Consensus pattern (15 bp):
TTGGTCTTAAGAATG
Found at i:93078422 original size:30 final size:30
Alignment explanation
Indices: 93078386--93078456 Score: 115
Period size: 30 Copynumber: 2.4 Consensus size: 30
93078376 TAGCTAAATG
*
93078386 GGCCCACACGCCCATGTGGTTTGCCCAAGT
1 GGCCCACACGCCCAAGTGGTTTGCCCAAGT
**
93078416 GGCCCACACGCCCAAGTGGTTTGCCCGTGT
1 GGCCCACACGCCCAAGTGGTTTGCCCAAGT
93078446 GGCCCACACGC
1 GGCCCACACGC
93078457 TTTGCAATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.15, C:0.39, G:0.28, T:0.17
Consensus pattern (30 bp):
GGCCCACACGCCCAAGTGGTTTGCCCAAGT
Found at i:93089514 original size:6 final size:6
Alignment explanation
Indices: 93089455--93089500 Score: 92
Period size: 6 Copynumber: 7.7 Consensus size: 6
93089445 TTACTATTTA
93089455 ATTTGT ATTTGT ATTTGT ATTTGT ATTTGT ATTTGT ATTTGT ATTT
1 ATTTGT ATTTGT ATTTGT ATTTGT ATTTGT ATTTGT ATTTGT ATTT
93089501 TCTTTTTTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 40 1.00
ACGTcount: A:0.17, C:0.00, G:0.15, T:0.67
Consensus pattern (6 bp):
ATTTGT
Found at i:93093740 original size:22 final size:22
Alignment explanation
Indices: 93093712--93093758 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
93093702 ACAGATTGTT
93093712 CATCAACAATGCCCTTCGAATC
1 CATCAACAATGCCCTTCGAATC
93093734 CATCAACAATGCCCTTCGAATC
1 CATCAACAATGCCCTTCGAATC
93093756 CAT
1 CAT
93093759 ATGTACAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.32, C:0.36, G:0.09, T:0.23
Consensus pattern (22 bp):
CATCAACAATGCCCTTCGAATC
Found at i:93094970 original size:13 final size:12
Alignment explanation
Indices: 93094951--93095005 Score: 60
Period size: 13 Copynumber: 4.6 Consensus size: 12
93094941 ATTTCTTTTA
93094951 TTTTTTCATTCT
1 TTTTTTCATTCT
93094963 TATTTTTCATTC-
1 T-TTTTTCATTCT
*
93094975 TTTTTTGATCTCT
1 TTTTTTCAT-TCT
*
93094988 TTTTTT-ATACT
1 TTTTTTCATTCT
93094999 TTTTTTC
1 TTTTTTC
93095006 TCCTTTTCTT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
11 15 0.41
12 6 0.16
13 16 0.43
ACGTcount: A:0.11, C:0.15, G:0.02, T:0.73
Consensus pattern (12 bp):
TTTTTTCATTCT
Found at i:93102515 original size:104 final size:105
Alignment explanation
Indices: 93102401--93102589 Score: 290
Period size: 104 Copynumber: 1.8 Consensus size: 105
93102391 TGAGAAATTA
* * * *
93102401 AATTAATAGGTTAGACAATAATTTAAATTTTATTTGAGATAAATAGGAGTTTAAATTGAATTAGG
1 AATTAATAGGTTAAACAATAATTTAAATTTTAATTAAGATAAATAGGAGTTTAAATTAAATTAGG
*
93102466 -TAATTAGAGTTTTAATTTACATCAAATAATTGGGACTTT
66 AGAATTAGAGTTTTAATTTACATCAAATAATTGGGACTTT
* * *
93102505 AATTAATAGGTTAAATAATAATTTAGATTTTAATTAAGATAATTAGGAGTTTAAATTAAATTAGG
1 AATTAATAGGTTAAACAATAATTTAAATTTTAATTAAGATAAATAGGAGTTTAAATTAAATTAGG
*
93102570 AGAATTAGGGTTTTAATTTA
66 AGAATTAGAGTTTTAATTTA
93102590 TTTAAAATAC
Statistics
Matches: 75, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
104 58 0.77
105 17 0.23
ACGTcount: A:0.42, C:0.02, G:0.15, T:0.41
Consensus pattern (105 bp):
AATTAATAGGTTAAACAATAATTTAAATTTTAATTAAGATAAATAGGAGTTTAAATTAAATTAGG
AGAATTAGAGTTTTAATTTACATCAAATAATTGGGACTTT
Found at i:93107056 original size:39 final size:39
Alignment explanation
Indices: 93107004--93107173 Score: 218
Period size: 39 Copynumber: 4.3 Consensus size: 39
93106994 GGACTAAGAT
93107004 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAG-C
1 CCGAAGGCATTTGTGCGAGATACAAA-TCCGGGTTAAGTC
*
93107043 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATCCGGGTTAAGTC
* * *
93107083 CCGAAGGCATTCGTGCGAGTTATAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACAAATCCGGGTTAAGTC
* * * * *
93107122 CCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATCCGGGTTAAGTC
93107161 CCGAAGGCATTTG
1 CCGAAGGCATTTG
93107174 AACGAGGAGC
Statistics
Matches: 116, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
38 10 0.09
39 80 0.69
40 26 0.22
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:93107087 original size:79 final size:78
Alignment explanation
Indices: 93106951--93107173 Score: 236
Period size: 79 Copynumber: 2.8 Consensus size: 78
93106941 TTGAATGCTG
* * * * * * *
93106951 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAAACCGGGCTAAG-TCCCGAAGGCAT
93107014 TTGTGCGAGATACAAA
63 TTGTGCGAGATACAAA
* * *
93107030 TTCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATT
* * *
93107094 CGTGCGAGTTATAAA
64 TGTGCGAGATACAAA
* * *
93107109 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
93107174 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
78 50 0.41
79 52 0.42
80 20 0.16
81 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACAAA
Found at i:93107195 original size:78 final size:79
Alignment explanation
Indices: 93107031--93107206 Score: 198
Period size: 78 Copynumber: 2.3 Consensus size: 79
93107021 AGATACAAAT
* * *
93107031 TCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** *
93107095 GTGCGAGTTATAAA
66 GAACGAGTGATAAA
* * * *
93107109 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
93107173 GAACGAG-GAGCTATA
66 GAACGAGTGA--TAAA
*
93107188 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
93107207 TACGTGATTT
Statistics
Matches: 83, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
77 1 0.01
78 68 0.82
79 14 0.17
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGATAAA
Found at i:93114982 original size:39 final size:39
Alignment explanation
Indices: 93114930--93115100 Score: 202
Period size: 39 Copynumber: 4.3 Consensus size: 39
93114920 GGACTAAGAT
93114930 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAG-C
1 CCGAAGGCATTTGTGCGAGATACAAA-TCCGGGTTAAGTC
*
93114969 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATCCGGGTTAAGTC
* * * *
93115009 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTTGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
93115049 CCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATCCGGGTTAAGTC
93115088 CCGAAGGCATTTG
1 CCGAAGGCATTTG
93115101 AACGAGGAGC
Statistics
Matches: 116, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
39 66 0.57
40 50 0.43
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:93115013 original size:79 final size:79
Alignment explanation
Indices: 93114877--93115100 Score: 222
Period size: 79 Copynumber: 2.8 Consensus size: 79
93114867 TTGAATGCTG
* * * * * * *
93114877 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAAACCGGGCTAAG-TCCCGAAGGCAT
93114940 TTGTGCGAGATA-CAAA
63 TTGTGCGAGATATCAAA
* * *
93114956 TTCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATT
* * *
93115020 CGTGCGAGTTATTAAA
64 TGTGCGAGATATCAAA
* * * *
93115036 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
93115101 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 11
0.81 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 89 0.73
80 31 0.25
81 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATATCAAA
Found at i:93115118 original size:79 final size:80
Alignment explanation
Indices: 93114957--93115133 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
93114947 AGATACAAAT
* * *
93114957 TCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
93115021 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
93115036 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
93115100 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
93115115 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
93115134 TACGTGATTT
Statistics
Matches: 81, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
78 15 0.19
79 58 0.72
80 8 0.10
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:93116526 original size:25 final size:25
Alignment explanation
Indices: 93116478--93116569 Score: 91
Period size: 25 Copynumber: 3.7 Consensus size: 25
93116468 TGTTACACAT
*
93116478 GTATACTCATACGAGCTATGAATCG
1 GTATACTCATACGAGCTATAAATCG
* *
93116503 GTATACTC-TCACGAGCTGTAAATCA
1 GTATACTCAT-ACGAGCTATAAATCG
*
93116528 GTA-AGCTCATACGAGCTACAAATCG
1 GTATA-CTCATACGAGCTATAAATCG
*
93116553 GTA-AGCTCATACAAGCT
1 GTATA-CTCATACGAGCT
93116570 GTGGCGTATC
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
24 2 0.04
25 54 0.95
26 1 0.02
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25
Consensus pattern (25 bp):
GTATACTCATACGAGCTATAAATCG
Found at i:93118157 original size:9 final size:10
Alignment explanation
Indices: 93118133--93118157 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
93118123 TTCCATTTCG
93118133 ATTTTTTAAA
1 ATTTTTTAAA
93118143 ATTTTTTAAA
1 ATTTTTTAAA
93118153 ATTTT
1 ATTTT
93118158 AAAGGTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (10 bp):
ATTTTTTAAA
Found at i:93122880 original size:25 final size:25
Alignment explanation
Indices: 93122852--93122902 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
93122842 GTGAAAGGAA
*
93122852 TAAAGTTGGTATTTATTGTTTGCTG
1 TAAAGTTGGTATTTATTATTTGCTG
93122877 TAAAGTTGGTATTTATTATTTGCTG
1 TAAAGTTGGTATTTATTATTTGCTG
93122902 T
1 T
93122903 TTTTGATTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.22, C:0.04, G:0.22, T:0.53
Consensus pattern (25 bp):
TAAAGTTGGTATTTATTATTTGCTG
Found at i:93123556 original size:43 final size:43
Alignment explanation
Indices: 93123430--93123572 Score: 207
Period size: 43 Copynumber: 3.3 Consensus size: 43
93123420 TTTAAATTTT
* *
93123430 ATGACCTTTAGCGGTGTTTTTGGGAAAAGCGTCGCTAAAGGTC
1 ATGACCTTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTC
* * *
93123473 ATGATCTTCAGCGGCGTTTGT-GGAAAAGCGCCGCTAAAGGTC
1 ATGACCTTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTC
* * *
93123515 TTGACTTTTAGCGGCGTTTGTGGGGAAAGCGTCGCTAAAGGTC
1 ATGACCTTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTC
93123558 ATGACCTTTAGCGGC
1 ATGACCTTTAGCGGC
93123573 ATTTTTTAGA
Statistics
Matches: 86, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
42 37 0.43
43 49 0.57
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (43 bp):
ATGACCTTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTC
Found at i:93125430 original size:23 final size:23
Alignment explanation
Indices: 93125395--93125439 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
93125385 ATTTCTTCTT
*
93125395 CTTTACTTGTTTTAT-TTTTTTC
1 CTTTACTTCTTTTATCTTTTTTC
*
93125417 CTTTATCTTCTTTTTTCTTTTTT
1 CTTTA-CTTCTTTTATCTTTTTT
93125440 ACTCTTTTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 5 0.26
23 8 0.42
24 6 0.32
ACGTcount: A:0.07, C:0.16, G:0.02, T:0.76
Consensus pattern (23 bp):
CTTTACTTCTTTTATCTTTTTTC
Found at i:93126122 original size:63 final size:62
Alignment explanation
Indices: 93125951--93126135 Score: 210
Period size: 63 Copynumber: 2.9 Consensus size: 62
93125941 GTGATAGCCC
* * * *
93125951 GTGTAACTCACTATTTTGAAGTTAGAGTCACA-TGGGCCAAGGGCACGAGCTTGTGTCCAGGCT
1 GTGTAACTCACTATTTTGAA-TTAGAGTCACACT-GGCCAAGGACACGGGCGTATGTCCAGGCT
* * * * *
93126014 GTGTATCTTACTATTTTGGAATTAGAGTCACACAGGCCAGGGACACGGGCGTATGTCTAGGCT
1 GTGTAACTCACTATTTT-GAATTAGAGTCACACTGGCCAAGGACACGGGCGTATGTCCAGGCT
* * * *
93126077 GTGTAACTCACTATTTTAGAATTAGAGACACACTGGCCAAAGACACGGGAGTGTGTCCA
1 GTGTAACTCACTATTTT-GAATTAGAGTCACACTGGCCAAGGACACGGGCGTATGTCCA
93126136 AGCCATGTGG
Statistics
Matches: 101, Mismatches: 19, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
63 98 0.97
64 3 0.03
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (62 bp):
GTGTAACTCACTATTTTGAATTAGAGTCACACTGGCCAAGGACACGGGCGTATGTCCAGGCT
Found at i:93128826 original size:17 final size:17
Alignment explanation
Indices: 93128806--93128839 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
93128796 AGGTTTGGGT
93128806 TTAAAAATTTTAATTAA
1 TTAAAAATTTTAATTAA
*
93128823 TTAAAATTTTTAATTAA
1 TTAAAAATTTTAATTAA
93128840 AAATATATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTAAAAATTTTAATTAA
Found at i:93137002 original size:95 final size:95
Alignment explanation
Indices: 93136843--93137269 Score: 342
Period size: 95 Copynumber: 4.5 Consensus size: 95
93136833 TCTGAAGTGG
* * * * ** ** *
93136843 TTCTTCTATTAAACTTATCAAACAGTTTCCTCTTTGAGGTGTCAGCTTAAGATTATATTGAATTT
1 TTCTTCTATTAAACTTAGCAAGCAGTTTCCTCTTTGGGGTGTCTGCTTTTGAAAATATTAAATTT
* * * *
93136908 TGGCTAAGTGCTTTAAGAGGCTAGAAGTGC
66 TGACTAAGTGCCTTAAGAGGCTAGAAGCGA
* * *
93136938 TTCTTTTATTAAACTTAGCAAGTAGTTTTCTCTTTGGGGTGTCTGCTTTTGAAAATATTAAATTT
1 TTCTTCTATTAAACTTAGCAAGCAGTTTCCTCTTTGGGGTGTCTGCTTTTGAAAATATTAAATTT
* *
93137003 TGCCTAAGTGCCTTAAAAGGCTAGAAGCGA
66 TGACTAAGTGCCTTAAGAGGCTAGAAGCGA
* * ** * * * * * *
93137033 TTATTCTATTAAACTTAGCGAGCAACTTCCTATTTGGGGTGTCT-ATTTTGTAACTTTGTAAAAT
1 TTCTTCTATTAAACTTAGCAAGCAGTTTCCTCTTTGGGGTGTCTGCTTTTGAAAATAT-TAAATT
*
93137097 TTAACTAAGTGCCTTAAGAGGCTAGAAGCGA
65 TTGACTAAGTGCCTTAAGAGGCTAGAAGCGA
* * * * * * ** * *
93137128 TTCTTTTATTGAACTTAGCGAGCAATTTCCTC-TTGAGGTGTCTACTTTAT-AACTTTGTTCAAT
1 TTCTTCTATTAAACTTAGCAAGCAGTTTCCTCTTTGGGGTGTCTGCTTT-TGAA-AATATTAAAT
* * * *
93137191 TTAG-CCAAGTACCTTAAAAGGCTAGAAGCGA
64 TTTGACTAAGTGCCTTAAGAGGCTAGAAGCGA
* *** * * *
93137222 TTCTTCTAGTAAACTTAATGAGCAATTTCCTC-TCGAGGTGTCTGCTTT
1 TTCTTCTATTAAACTTAGCAAGCAGTTTCCTCTTTGGGGTGTCTGCTTT
93137270 ATAACTTTGT
Statistics
Matches: 270, Mismatches: 58, Indels: 9
0.80 0.17 0.03
Matches are distributed among these distances:
94 84 0.31
95 183 0.68
96 3 0.01
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (95 bp):
TTCTTCTATTAAACTTAGCAAGCAGTTTCCTCTTTGGGGTGTCTGCTTTTGAAAATATTAAATTT
TGACTAAGTGCCTTAAGAGGCTAGAAGCGA
Found at i:93137213 original size:94 final size:94
Alignment explanation
Indices: 93136913--93137281 Score: 375
Period size: 95 Copynumber: 3.9 Consensus size: 94
93136903 AATTTTGGCT
* * * * * * * * * *
93136913 AAGTGCTTTAAGAGGCTAGAAGTGCTTCTTTTATTAAACTTAGCAAGTAGTTTTCTCTTTGGGGT
1 AAGTGCCTTAAAAGGCTAGAAGCGATTCTTCTATTAAACTTAGCGAGCAATTTCCTC-TTGAGGT
* * * *
93136978 GTCTGCTTT-TGAAAATAT-T-AAATTTTGCC
65 GTCTACTTTAT--AACTTTGTAAAATTTAGCC
* * * *
93137007 TAAGTGCCTTAAAAGGCTAGAAGCGATTATTCTATTAAACTTAGCGAGCAACTTCCTATTTGGGG
1 -AAGTGCCTTAAAAGGCTAGAAGCGATTCTTCTATTAAACTTAGCGAGCAATTTCCT-CTTGAGG
* * * *
93137072 TGTCTATTTTGTAACTTTGTAAAATTTAACT
64 TGTCTACTTTATAACTTTGTAAAATTTAGCC
* * *
93137103 AAGTGCCTTAAGAGGCTAGAAGCGATTCTTTTATTGAACTTAGCGAGCAATTTCCTCTTGAGGTG
1 AAGTGCCTTAAAAGGCTAGAAGCGATTCTTCTATTAAACTTAGCGAGCAATTTCCTCTTGAGGTG
**
93137168 TCTACTTTATAACTTTGTTCAATTTAGCC
66 TCTACTTTATAACTTTGTAAAATTTAGCC
* * ** *
93137197 AAGTACCTTAAAAGGCTAGAAGCGATTCTTCTAGTAAACTTAATGAGCAATTTCCTCTCGAGGTG
1 AAGTGCCTTAAAAGGCTAGAAGCGATTCTTCTATTAAACTTAGCGAGCAATTTCCTCTTGAGGTG
*
93137262 TCTGCTTTATAACTTTGTAA
66 TCTACTTTATAACTTTGTAA
93137282 GCCTAAAAAG
Statistics
Matches: 227, Mismatches: 43, Indels: 9
0.81 0.15 0.03
Matches are distributed among these distances:
94 108 0.48
95 111 0.49
96 8 0.04
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.38
Consensus pattern (94 bp):
AAGTGCCTTAAAAGGCTAGAAGCGATTCTTCTATTAAACTTAGCGAGCAATTTCCTCTTGAGGTG
TCTACTTTATAACTTTGTAAAATTTAGCC
Found at i:93139853 original size:22 final size:24
Alignment explanation
Indices: 93139816--93139861 Score: 69
Period size: 22 Copynumber: 2.0 Consensus size: 24
93139806 AATTGGTTTT
93139816 GATAGATGTTATTTGAAATATTTA
1 GATAGATGTTATTTGAAATATTTA
*
93139840 GATA-ATGTT-TTTGAAGTATTTA
1 GATAGATGTTATTTGAAATATTTA
93139862 TAGGGGTACA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 12 0.57
23 5 0.24
24 4 0.19
ACGTcount: A:0.35, C:0.00, G:0.17, T:0.48
Consensus pattern (24 bp):
GATAGATGTTATTTGAAATATTTA
Found at i:93141997 original size:21 final size:20
Alignment explanation
Indices: 93141973--93142011 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
93141963 GTGTAAATGT
93141973 GGTAACATAATTGTTATTTTA
1 GGTAACATAA-TGTTATTTTA
**
93141994 GGTAATTTAATGTTATTT
1 GGTAACATAATGTTATTT
93142012 ATATGATATA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.31, C:0.03, G:0.15, T:0.51
Consensus pattern (20 bp):
GGTAACATAATGTTATTTTA
Found at i:93144329 original size:10 final size:10
Alignment explanation
Indices: 93144311--93144344 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
93144301 TTACCCATTA
93144311 CAAAACATGC
1 CAAAACATGC
* *
93144321 CAAATCATGT
1 CAAAACATGC
93144331 CAAAACATGC
1 CAAAACATGC
93144341 CAAA
1 CAAA
93144345 TACCATTCAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.50, C:0.26, G:0.09, T:0.15
Consensus pattern (10 bp):
CAAAACATGC
Found at i:93146429 original size:20 final size:21
Alignment explanation
Indices: 93146404--93146450 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
93146394 AATATTTTAT
* *
93146404 TATATTATGATT-TTGTAACA
1 TATATTAAGATTATTATAACA
93146424 TATATTAAGATTAATTATAACA
1 TATATTAAGATT-ATTATAACA
93146446 TATAT
1 TATAT
93146451 AACATATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 11 0.48
22 12 0.52
ACGTcount: A:0.43, C:0.04, G:0.06, T:0.47
Consensus pattern (21 bp):
TATATTAAGATTATTATAACA
Found at i:93153849 original size:42 final size:42
Alignment explanation
Indices: 93153797--93153951 Score: 186
Period size: 42 Copynumber: 3.7 Consensus size: 42
93153787 CTAAGACTAT
* *
93153797 GTGTAAGACCATATCTGAGATATGGCATCTATATGAGACTTC
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGACTTC
* * * *
93153839 GTGTGAGACCATATTTGCGATATGGCATCGATATAAGACTTC
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGACTTC
* * * *
93153881 GTGTAAGACTATAGCTGGGATATTGGCATCGATACGAGA-TCC
1 GTGTAAGACCATATCTGGGATA-TGGCATCGATATGAGACTTC
*
93153923 TATGTAAGACCATATCTGGGATATGGCAT
1 -GTGTAAGACCATATCTGGGATATGGCAT
93153952 TAGTCTGGTA
Statistics
Matches: 95, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
42 62 0.65
43 33 0.35
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGGCATCGATATGAGACTTC
Found at i:93153946 original size:85 final size:84
Alignment explanation
Indices: 93153788--93153951 Score: 197
Period size: 85 Copynumber: 1.9 Consensus size: 84
93153778 TTAGGGTTAC
* * * * * *
93153788 TAAGACTATGTGTAAGACCATATCTGAGATATGGCATCTATATGAGACTTCGTGTGAGACCATAT
1 TAAGACTATGTGTAAGACCATAGCTGAGATATGGCATCGATACGAGACCTCATGTAAGACCATAT
*
93153853 TTGCGATATGGCATCGATA
66 CTGCGATATGGCATCGATA
* *
93153872 TAAGACT-TCGTGTAAGACTATAGCTGGGATATTGGCATCGATACGAGATCCT-ATGTAAGACCA
1 TAAGACTAT-GTGTAAGACCATAGCTGAGATA-TGGCATCGATACGAGA-CCTCATGTAAGACCA
*
93153935 TATCTGGGATATGGCAT
63 TATCTGCGATATGGCAT
93153952 TAGTCTGGTA
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
83 1 0.01
84 26 0.39
85 38 0.57
86 2 0.03
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (84 bp):
TAAGACTATGTGTAAGACCATAGCTGAGATATGGCATCGATACGAGACCTCATGTAAGACCATAT
CTGCGATATGGCATCGATA
Found at i:93157547 original size:24 final size:25
Alignment explanation
Indices: 93157493--93157547 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 25
93157483 AATAAAATTT
* *
93157493 AATT-TAATCTTTTAAAAATTATAA
1 AATTATAATCTATTAAAAATGATAA
93157517 AGA-TATAATCTATT-AAAATGATAA
1 A-ATTATAATCTATTAAAAATGATAA
93157541 AATTATA
1 AATTATA
93157548 TTTTTACTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
23 1 0.04
24 16 0.62
25 9 0.35
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.40
Consensus pattern (25 bp):
AATTATAATCTATTAAAAATGATAA
Found at i:93159711 original size:18 final size:18
Alignment explanation
Indices: 93159688--93159733 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
93159678 TGTGGATATA
93159688 GACCGTGTGGTCACACAC
1 GACCGTGTGGTCACACAC
*
93159706 GACCGTGTGGTCACACAT
1 GACCGTGTGGTCACACAC
*
93159724 GCCCGTGTGG
1 GACCGTGTGG
93159734 CTTGGGACAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.17, C:0.30, G:0.33, T:0.20
Consensus pattern (18 bp):
GACCGTGTGGTCACACAC
Found at i:93161971 original size:36 final size:36
Alignment explanation
Indices: 93161924--93161993 Score: 131
Period size: 36 Copynumber: 1.9 Consensus size: 36
93161914 AGAAGATGAA
93161924 GAAAAGATGATATCTTTCTTTTCTTGATTTTATTAC
1 GAAAAGATGATATCTTTCTTTTCTTGATTTTATTAC
*
93161960 GAAAAGATGATATCTTTCTTTTCTTTATTTTATT
1 GAAAAGATGATATCTTTCTTTTCTTGATTTTATT
93161994 CTATTTTTAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.27, C:0.10, G:0.10, T:0.53
Consensus pattern (36 bp):
GAAAAGATGATATCTTTCTTTTCTTGATTTTATTAC
Found at i:93164403 original size:44 final size:44
Alignment explanation
Indices: 93164303--93164460 Score: 151
Period size: 46 Copynumber: 3.5 Consensus size: 44
93164293 GTCGATACCG
* * *
93164303 TGTCCCAGACAGGTCTTACACTAACACATGTAACCGT-GCCGATGTA
1 TGTCCCAGACATGTCTTACACTAACACATCT---CGTAGCCGATGCA
* *
93164349 TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTAACACATCTCGTAGCCGATGCA
* *
93164393 TGTCCCAGACATGTCTGACACTGGATA-ACATCTTG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACACT--A-ACACATCTCGTA-GCCGATGCA
* *
93164439 TGTCCCAAACAAGTCTTACACT
1 TGTCCCAGACATGTCTTACACT
93164461 GGCTCTCATA
Statistics
Matches: 95, Mismatches: 12, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
43 3 0.03
44 28 0.29
45 1 0.01
46 63 0.66
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (44 bp):
TGTCCCAGACATGTCTTACACTAACACATCTCGTAGCCGATGCA
Found at i:93164483 original size:46 final size:47
Alignment explanation
Indices: 93164433--93164603 Score: 154
Period size: 46 Copynumber: 3.7 Consensus size: 47
93164423 TCTTGAGGCC
* *
93164433 GATGCATGTCCCAAACA-AGTCTTACACTGGCTCTCATAATGTGGTT
1 GATGCATGTCCCAGACATAGTCTTACACTGGCTCTCATAATGTGGAT
* * * **
93164479 GATGCATGTCCCAGACATA-TCTTACACTAGCCCTCGTTTCAATGCCGAT
1 GATGCATGTCCCAGACATAGTCTTACACTGGCTCTC--AT-AATGTGGAT
* * * **
93164528 G-T-CATGTCCCATACATGGTCTTACACTGGCTCTCATTATGTGGCC
1 GATGCATGTCCCAGACATAGTCTTACACTGGCTCTCATAATGTGGAT
* *
93164573 GATGCTTGTCCCAGACAT-GTCTAACACTGGC
1 GATGCATGTCCCAGACATAGTCTTACACTGGC
93164604 ATACATATCT
Statistics
Matches: 98, Mismatches: 20, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
45 5 0.05
46 44 0.45
47 26 0.27
48 16 0.16
49 7 0.07
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (47 bp):
GATGCATGTCCCAGACATAGTCTTACACTGGCTCTCATAATGTGGAT
Found at i:93164577 original size:94 final size:92
Alignment explanation
Indices: 93164430--93164600 Score: 252
Period size: 94 Copynumber: 1.8 Consensus size: 92
93164420 ACATCTTGAG
**
93164430 GCCGATGCATGTCCCAAACAAGTCTTACACTGGCTCTCATAATGTGGTTGATGCATGTCCCAGAC
1 GCCGATGCATGTCCCAAACAAGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGAC
*
93164495 ATATCTTACACTAGCCCTCGTTTCAAT
66 ATATCTAACACTAGCCCTCGTTTCAAT
* * * *
93164522 GCCGATGTCATGTCCCATACATGGTCTTACACTGGCTCTCATTATGTGGCCGATGCTTGTCCCAG
1 GCCGATG-CATGTCCCAAACA-AGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAG
*
93164587 ACATGTCTAACACT
64 ACATATCTAACACT
93164601 GGCATACATA
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
92 7 0.10
93 12 0.17
94 50 0.72
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.30
Consensus pattern (92 bp):
GCCGATGCATGTCCCAAACAAGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGAC
ATATCTAACACTAGCCCTCGTTTCAAT
Found at i:93168240 original size:31 final size:28
Alignment explanation
Indices: 93168177--93168241 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 28
93168167 ATGATAACGT
* * *
93168177 AAGTGATTAAAATGTAATATTTAAACAT
1 AAGTGATTAAAATATAATATGTAAACAA
93168205 AAGTGATTAAAATATAACTTATGGTAAACAA
1 AAGTGATTAAAATATAA--TAT-GTAAACAA
93168236 AAGTGA
1 AAGTGA
93168242 CCATGAGTGT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 16 0.52
30 3 0.10
31 12 0.39
ACGTcount: A:0.51, C:0.05, G:0.14, T:0.31
Consensus pattern (28 bp):
AAGTGATTAAAATATAATATGTAAACAA
Found at i:93168955 original size:14 final size:15
Alignment explanation
Indices: 93168938--93168977 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
93168928 AACGTTAGTC
93168938 ATTAAAATATGA-AA
1 ATTAAAATATGATAA
93168952 ATTAAAA-ATGATTAA
1 ATTAAAATATGA-TAA
93168967 ATTAAAATATG
1 ATTAAAATATG
93168978 TAATGGCATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 4 0.17
14 7 0.30
15 9 0.39
16 3 0.13
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (15 bp):
ATTAAAATATGATAA
Found at i:93170766 original size:3 final size:3
Alignment explanation
Indices: 93170758--93170789 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
93170748 CAAACCCATT
93170758 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
93170790 TCAGTTGGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:93171741 original size:27 final size:27
Alignment explanation
Indices: 93171675--93171733 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
93171665 AGTTGTCTCC
* *
93171675 AGTGTCAAAGTGTGAGATGTTCTGCGA
1 AGTGTCAAAGTGTGAAATGTTCTGCAA
93171702 AGTGTCAAAGTGTGAAATGCTT-TGCAA
1 AGTGTCAAAGTGTGAAATG-TTCTGCAA
93171729 AGTGT
1 AGTGT
93171734 TGAAGTGTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 27 0.93
28 2 0.07
ACGTcount: A:0.29, C:0.10, G:0.31, T:0.31
Consensus pattern (27 bp):
AGTGTCAAAGTGTGAAATGTTCTGCAA
Found at i:93173416 original size:45 final size:45
Alignment explanation
Indices: 93173367--93173453 Score: 122
Period size: 45 Copynumber: 1.9 Consensus size: 45
93173357 CTAAAGGATT
*
93173367 CTATGACATCATGGTATAA-ATGAGTAAGACCATAGTTGAAAGACA
1 CTATGACATCATGGTA-AACAAGAGTAAGACCATAGTTGAAAGACA
* * *
93173412 CTATGACATCATGGTAAACAAGATTGAGACTATAGTTGAAAG
1 CTATGACATCATGGTAAACAAGAGTAAGACCATAGTTGAAAG
93173454 GCGTTATGGC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
44 2 0.05
45 35 0.95
ACGTcount: A:0.41, C:0.13, G:0.21, T:0.25
Consensus pattern (45 bp):
CTATGACATCATGGTAAACAAGAGTAAGACCATAGTTGAAAGACA
Found at i:93175912 original size:38 final size:38
Alignment explanation
Indices: 93175859--93176104 Score: 204
Period size: 38 Copynumber: 6.0 Consensus size: 38
93175849 TTTCAAATTA
* *
93175859 ACATGTATAACCGTGGCATATCCACTTAGCACCACATT
1 ACATGTTTAACCGTGGCATATCCACTTAGCACCACGTT
* *
93175897 ACATGTTTAATCGTGGTATATCCACTTAGCACCACGTTAAT
1 ACATGTTTAACCGTGGCATATCCACTTAGCACCACG-T--T
* *
93175938 GAATCAATATATGTAACTGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGT-T-TAACCGTGGCATATCCACTTAGCACCACGTT
* * *
93175982 ACATGTTTAACCGTAGTATATCCACTTAGCACCACATTAAT
1 ACATGTTTAACCGTGGCATATCCACTTAGCACCAC-GT--T
*
93176023 GAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGT-T-TAACCGTGGCATATCCACTTAGCACCACGTT
* * * *
93176067 ACACGTATAACCGTGGTATATTCACTTAGCACCACGTT
1 ACATGTTTAACCGTGGCATATCCACTTAGCACCACGTT
93176105 TTTTTCATTC
Statistics
Matches: 168, Mismatches: 22, Indels: 36
0.74 0.10 0.16
Matches are distributed among these distances:
38 86 0.51
39 3 0.02
40 5 0.03
41 4 0.02
42 2 0.01
43 2 0.01
44 4 0.02
45 6 0.04
46 4 0.02
47 52 0.31
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (38 bp):
ACATGTTTAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:93175963 original size:85 final size:85
Alignment explanation
Indices: 93175866--93176104 Score: 406
Period size: 85 Copynumber: 2.8 Consensus size: 85
93175856 TTAACATGTA
* *
93175866 TAACCGTGGCATATCCACTTAGCACCACATTACATGTTTAATCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
93175931 CGTTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
* *
93175951 TAACTGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTAGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
*
93176016 CATTAATGAATCAATATATG
66 CGTTAATGAATCAATATATG
* * *
93176036 TAACCGTGGCATATCCACTTAGCACCACGTTACACGTATAACCGTGGTATATTCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
93176101 CGTT
66 CGTT
93176105 TTTTTCATTC
Statistics
Matches: 143, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
85 143 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (85 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
CGTTAATGAATCAATATATG
Found at i:93189536 original size:40 final size:40
Alignment explanation
Indices: 93189492--93189753 Score: 321
Period size: 39 Copynumber: 6.7 Consensus size: 40
93189482 GCTCCTCGTT
* *
93189492 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
93189532 CAAATGCCTTCGAGACTTAACCCGG-ATTAAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATT-AGTATCTCGCA
93189572 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
93189611 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
93189650 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
93189689 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
93189730 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
93189754 CATCATTCAA
Statistics
Matches: 202, Mismatches: 11, Indels: 19
0.87 0.05 0.08
Matches are distributed among these distances:
38 2 0.01
39 126 0.62
40 65 0.32
41 9 0.04
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:93194404 original size:39 final size:39
Alignment explanation
Indices: 93194279--93194460 Score: 190
Period size: 40 Copynumber: 4.6 Consensus size: 39
93194269 GCTACTCGTT
* *
93194279 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATT-TAGTAACTCGCA
*
93194319 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GATTTAGTAACTCGCA
* *
93194359 CCAATGCCTTCGGG-CTTAGCCCGAAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCG-ATTTAGTAACTCGCA
* * * * * *
93194398 CAAATGCCTTC-GGATCTTAGTCCAGATATGGTCACTTAGCG
1 CAAATGCCTTCGGGA-CTTAG-CCCGATTTAGTAAC-TCGCA
93194439 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
93194461 AGACATCATT
Statistics
Matches: 120, Mismatches: 15, Indels: 15
0.80 0.10 0.10
Matches are distributed among these distances:
38 3 0.03
39 33 0.28
40 68 0.57
41 16 0.13
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGATTTAGTAACTCGCA
Found at i:93194447 original size:79 final size:80
Alignment explanation
Indices: 93194279--93194460 Score: 192
Period size: 79 Copynumber: 2.3 Consensus size: 80
93194269 GCTACTCGTT
* ** *
93194279 CAAATGCCTTCGGGACATAGCCCG-GTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGAAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCA
* *
93194343 GATTTAGTAACTCGCAC
64 GATATAGTAACTAGCAC
* **
93194360 CAATGCCTTCGGG-CTTAGCCCGAAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCAG
1 CAAAGCCTTCGGGACTTAGCCCGAAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCAG
* * *
93194423 ATATGGTCACTTAGC-G
65 ATATAGTAAC-TAGCAC
93194439 CAAAGCCTTCGGGACTTAGCCC
1 CAAAGCCTTCGGGACTTAGCCC
93194461 AGACATCATT
Statistics
Matches: 84, Mismatches: 13, Indels: 9
0.79 0.12 0.08
Matches are distributed among these distances:
78 3 0.04
79 57 0.68
80 21 0.25
81 3 0.04
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGAAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGA
TATAGTAACTAGCAC
Found at i:93202709 original size:33 final size:33
Alignment explanation
Indices: 93202667--93202731 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
93202657 GGAAAAGCAA
93202667 TGTTAGTGGACTAAGCCGAAATAGTCGCCATAG
1 TGTTAGTGGACTAAGCCGAAATAGTCGCCATAG
93202700 TGTTAGTGGACTAAGCCGAAATAGTCGCCATA
1 TGTTAGTGGACTAAGCCGAAATAGTCGCCATA
93202732 TTTTGAACAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (33 bp):
TGTTAGTGGACTAAGCCGAAATAGTCGCCATAG
Found at i:93203046 original size:46 final size:45
Alignment explanation
Indices: 93202919--93203046 Score: 125
Period size: 46 Copynumber: 2.8 Consensus size: 45
93202909 GGGTCATTTG
*
93202919 TGTGTTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA
1 TGTGTTAGTGTAAGACCATGTCTGGGACA-GGCATCAGCATTGAGA
* * * * * *
93202965 TGAGAGCTAGTGCAAGA-CATGTCTGGGATATGCATCATC-TATGAGA
1 T--GTGTTAGTGTAAGACCATGTCTGGGACAGGCATCAGCAT-TGAGA
*
93203011 TGTGTTAGTGTAAGACCATGTATGGGACACGGCATC
1 TGTGTTAGTGTAAGACCATGTCTGGGACA-GGCATC
93203047 GGTATGAATA
Statistics
Matches: 64, Mismatches: 13, Indels: 10
0.74 0.15 0.11
Matches are distributed among these distances:
44 11 0.17
45 12 0.19
46 18 0.28
47 12 0.19
48 11 0.17
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (45 bp):
TGTGTTAGTGTAAGACCATGTCTGGGACAGGCATCAGCATTGAGA
Found at i:93203189 original size:47 final size:47
Alignment explanation
Indices: 93202924--93203195 Score: 204
Period size: 47 Copynumber: 5.7 Consensus size: 47
93202914 ATTTGTGTGT
* *
93202924 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGA-GAGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGATA-GATGAGC
* * * *
93202972 TAGTGCAAGA-CATGTCTGGGATAT-GCATC-A-TCT-ATGAGATGTGT
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGACT-TGAT-AGATGAGC
* * *
93203016 TAGTGTAAGACCATGTATGGGACACGGCATCG-GTATGAATATG-TGAGAGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGACT-TG-ATA-GAT--GAGC
** * * *
93203066 TAGTGTAAGACCATGTCTGGGACATGGTGTCGGCCTCGATTTTGAT-AG-
1 TAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGA--TAGATGAGC
*
93203114 TCAGTATAAGACCATGTCTGGGACATGGCATCGACTTGATAGATGAGC
1 T-AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATAGATGAGC
* *
93203162 CAGTGTAAGACCATGTCTGAGACATGGCATCGAC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGAC
93203196 ATTATACCCT
Statistics
Matches: 175, Mismatches: 29, Indels: 41
0.71 0.12 0.17
Matches are distributed among these distances:
43 4 0.02
44 13 0.07
45 11 0.06
46 14 0.08
47 48 0.27
48 17 0.10
49 32 0.18
50 30 0.17
51 3 0.02
52 3 0.02
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (47 bp):
TAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATAGATGAGC
Found at i:93210517 original size:43 final size:43
Alignment explanation
Indices: 93210364--93210518 Score: 147
Period size: 43 Copynumber: 3.6 Consensus size: 43
93210354 TGTTTTCGTA
*
93210364 TAAGACCACGTTTGGGACGTTGGCATCAAT-TTATGATTTACGTG
1 TAAGACCACGTCTGGGACGTTGGCATCAATATT-TGA-TTACGTG
* * * * * **
93210408 TAAGACCATGTCTGGGACATCGACATC-GTATTTGATTTTGTG
1 TAAGACCACGTCTGGGACGTTGGCATCAATATTTGATTACGTG
* * *
93210450 TAAAACC-CTGTCTAGGATCG-TGGCATCAATATTTGATTACATG
1 TAAGACCAC-GTCTGGGA-CGTTGGCATCAATATTTGATTACGTG
93210493 TAAGACCACGTCTGGGACGTTGGCAT
1 TAAGACCACGTCTGGGACGTTGGCAT
93210519 TGTATGAGCT
Statistics
Matches: 85, Mismatches: 20, Indels: 13
0.72 0.17 0.11
Matches are distributed among these distances:
42 25 0.29
43 35 0.41
44 25 0.29
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (43 bp):
TAAGACCACGTCTGGGACGTTGGCATCAATATTTGATTACGTG
Done.