Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 279 of 349
Found at i:93214045 original size:25 final size:25
Alignment explanation
Indices: 93213986--93214046 Score: 65
Period size: 25 Copynumber: 2.5 Consensus size: 25
93213976 GTACATGTAG
93213986 GCTCATACGAG-CAATAAACGGTAA
1 GCTCATACGAGCCAATAAACGGTAA
* *
93214010 GCTTC-TCCGAGCCGAAT-ATCGGTAA
1 GC-TCATACGAGCC-AATAAACGGTAA
93214035 GCTCATACGAGC
1 GCTCATACGAGC
93214047 TATGGTGAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
24 9 0.30
25 18 0.60
26 3 0.10
ACGTcount: A:0.31, C:0.26, G:0.23, T:0.20
Consensus pattern (25 bp):
GCTCATACGAGCCAATAAACGGTAA
Found at i:93215517 original size:22 final size:22
Alignment explanation
Indices: 93215487--93215538 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
93215477 GATCAGTGTT
* *
93215487 ATCAATGGCAATTTATCTGCAA
1 ATCAGTGGCAATATATCTGCAA
93215509 ATCAGTGGCAATATATCTGCAA
1 ATCAGTGGCAATATATCTGCAA
93215531 ATCAGTGG
1 ATCAGTGG
93215539 TGGCTTGTCC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (22 bp):
ATCAGTGGCAATATATCTGCAA
Found at i:93215749 original size:22 final size:22
Alignment explanation
Indices: 93215706--93215750 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
93215696 ATCATGATGA
*
93215706 TTGATATGATGAGATTGCTATT
1 TTGATATGATGAGATTGATATT
*
93215728 TTGATATGTATGTGATT-ATATT
1 TTGATATG-ATGAGATTGATATT
93215750 T
1 T
93215751 GTGTTGATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.27, C:0.02, G:0.20, T:0.51
Consensus pattern (22 bp):
TTGATATGATGAGATTGATATT
Found at i:93218850 original size:16 final size:16
Alignment explanation
Indices: 93218829--93218879 Score: 66
Period size: 16 Copynumber: 3.2 Consensus size: 16
93218819 GTATTTATCA
* * *
93218829 TTTTCACAATCTAGAT
1 TTTTCACAGTCTACAG
93218845 TTTTCACAGTCTACAG
1 TTTTCACAGTCTACAG
*
93218861 TTTTCACAGTCTATAG
1 TTTTCACAGTCTACAG
93218877 TTT
1 TTT
93218880 CAAATCTAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.25, C:0.20, G:0.10, T:0.45
Consensus pattern (16 bp):
TTTTCACAGTCTACAG
Found at i:93219880 original size:47 final size:48
Alignment explanation
Indices: 93219791--93219927 Score: 188
Period size: 47 Copynumber: 2.8 Consensus size: 48
93219781 CAGAACACCA
93219791 TTTGTGGACAAGCCACCACTGATTTGCAGATAAACTGCCACTGGTAA-AC
1 TTTGTGGACAAGCCACCAC-GATTTGCAGATAAACTGCCACTGG-AACAC
* * *
93219840 TTTGTGGACAATCCACCAC-ATATGCAGATATACTGCCACTGGAACAC
1 TTTGTGGACAAGCCACCACGATTTGCAGATAAACTGCCACTGGAACAC
* *
93219887 TTTGTGGATAAGCCATCACTGATTTGCAGATAAACTGCCAC
1 TTTGTGGACAAGCCACCAC-GATTTGCAGATAAACTGCCAC
93219928 ATACTTCCCA
Statistics
Matches: 77, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
46 2 0.03
47 39 0.51
49 36 0.47
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.26
Consensus pattern (48 bp):
TTTGTGGACAAGCCACCACGATTTGCAGATAAACTGCCACTGGAACAC
Found at i:93222546 original size:21 final size:22
Alignment explanation
Indices: 93222521--93222569 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
93222511 TAGTAGATAT
93222521 AATATTTA-TAAAATAAAATAA
1 AATATTTATTAAAATAAAATAA
* *
93222542 AATA-TTATTTAAATAATATAA
1 AATATTTATTAAAATAAAATAA
93222563 AAT-TTTA
1 AATATTTA
93222570 AAAGGATTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 3 0.12
21 21 0.88
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
AATATTTATTAAAATAAAATAA
Found at i:93224184 original size:29 final size:31
Alignment explanation
Indices: 93224152--93224209 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
93224142 TCATGTGTAT
93224152 AATTGCAT-CT-AATCAAAATTCATATATCA
1 AATTGCATACTGAATCAAAATTCATATATCA
* *
93224181 AATTGCATATTGAATCAAAGTTCATATAT
1 AATTGCATACTGAATCAAAATTCATATAT
93224210 AATTTTAAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 8 0.32
30 1 0.04
31 16 0.64
ACGTcount: A:0.43, C:0.14, G:0.07, T:0.36
Consensus pattern (31 bp):
AATTGCATACTGAATCAAAATTCATATATCA
Found at i:93224213 original size:29 final size:27
Alignment explanation
Indices: 93224149--93224213 Score: 76
Period size: 31 Copynumber: 2.3 Consensus size: 27
93224139 TTTTCATGTG
93224149 TATAATTGCATCTAATCAAAATTCATA
1 TATAATTGCATCTAATCAAAATTCATA
* *
93224176 TATCAAATTGCATATTGAATCAAAGTTCATA
1 TAT--AATTGCAT-CT-AATCAAAATTCATA
93224207 TATAATT
1 TATAATT
93224214 TTAAGATATA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
27 3 0.09
29 12 0.38
30 1 0.03
31 16 0.50
ACGTcount: A:0.43, C:0.12, G:0.06, T:0.38
Consensus pattern (27 bp):
TATAATTGCATCTAATCAAAATTCATA
Found at i:93227468 original size:46 final size:46
Alignment explanation
Indices: 93227401--93227566 Score: 187
Period size: 46 Copynumber: 3.6 Consensus size: 46
93227391 TGTAACCCGC
93227401 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
93227447 CCATAAGTGAACTCGGACTCAACTCAACGAGCTTGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * * * *
93227497 CCCT---CGAACTCGGACTCAACTCAACAAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
93227540 CCATAAGTGAACTCGGACTCAACTCAA
1 CCATAAGTGAACTCGGACTCAACTCAA
93227567 TGACTTTGGA
Statistics
Matches: 99, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 6 0.06
44 1 0.01
46 54 0.55
47 25 0.25
48 1 0.01
49 1 0.01
50 6 0.06
51 3 0.03
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:93227521 original size:93 final size:93
Alignment explanation
Indices: 93227409--93227580 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
93227399 GCCCATAAGT
* * *
93227409 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
93227474 CGAGC-TTGGATGCCTAGTTACATCCCTC
66 CGA-CTTTGGATGCCTAGTTACATCCCTC
*
93227502 GAACTCGGACTCAACTCAACAAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
93227567 TGACTTTGGATGCC
66 CGACTTTGGATGCC
93227581 CAAATATCCC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 72 0.99
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGACTTTGGATGCCTAGTTACATCCCTC
Found at i:93241073 original size:93 final size:93
Alignment explanation
Indices: 93240909--93241085 Score: 250
Period size: 93 Copynumber: 1.9 Consensus size: 93
93240899 TTTTCACAAC
* *
93240909 ACATGCATAATAAATGACCACTAGAAGAGTTAATATTTAAGTCCAGTGTCTATGAGACTCTACAA
1 ACATGCATAATAAATGACCACTAGAAGAGTCAATATTTAAGTCCAGTGTCCATGAGACTCTACAA
93240974 GAAAAGCTATCTTCGTCAACAATCACAT
66 GAAAAGCTATCTTCGTCAACAATCACAT
* * * *
93241002 ACATGCATGATAAA-GAACCGCTAGAAGAGTCAATATTTAAGTTCAGTGTCCATGA-ACCTTTAC
1 ACATGCATAATAAATG-ACCACTAGAAGAGTCAATATTTAAGTCCAGTGTCCATGAGA-CTCTAC
* *
93241065 AAGGAAAGCTATCTTGGTCAA
64 AAGAAAAGCTATCTTCGTCAA
93241086 TAAATACCAT
Statistics
Matches: 74, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (93 bp):
ACATGCATAATAAATGACCACTAGAAGAGTCAATATTTAAGTCCAGTGTCCATGAGACTCTACAA
GAAAAGCTATCTTCGTCAACAATCACAT
Found at i:93243745 original size:21 final size:20
Alignment explanation
Indices: 93243708--93243746 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
93243698 TCAAAATTTG
93243708 AAAATATCAAAAATATTATA
1 AAAATATCAAAAATATTATA
* *
93243728 AAAACTATTAAAACTATTA
1 AAAA-TATCAAAAATATTA
93243747 AATTAAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (20 bp):
AAAATATCAAAAATATTATA
Found at i:93243923 original size:17 final size:18
Alignment explanation
Indices: 93243878--93243932 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
93243868 AAACAAATTT
*
93243878 AAATGATAAAATTATTAA
1 AAATAATAAAATTATTAA
93243896 AAATAATAAAATT-TTATA
1 AAATAATAAAATTATTA-A
93243914 AAAT-ATAAAA--ATTAA
1 AAATAATAAAATTATTAA
93243929 AAAT
1 AAAT
93243933 TTATAAAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
15 5 0.15
16 3 0.09
17 9 0.26
18 17 0.50
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (18 bp):
AAATAATAAAATTATTAA
Found at i:93244661 original size:32 final size:32
Alignment explanation
Indices: 93244625--93244690 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
93244615 GGGACAAAAC
*
93244625 TTTGATTAAGGGAAAAATAGTACAACGCGTAT
1 TTTGATTAAGGGAAAAAGAGTACAACGCGTAT
93244657 TTTGATTAAGGGAAAAAGAGTACAACGCGTAT
1 TTTGATTAAGGGAAAAAGAGTACAACGCGTAT
93244689 TT
1 TT
93244691 ACTCCCCCTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.29
Consensus pattern (32 bp):
TTTGATTAAGGGAAAAAGAGTACAACGCGTAT
Found at i:93246314 original size:20 final size:18
Alignment explanation
Indices: 93246289--93246339 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
93246279 AATGACTATT
93246289 TTGTAAAGTTGTAAAATAA
1 TTGTAAA-TTGTAAAATAA
*
93246308 GTTGTAAATGTGTGAAATAA
1 -TTGTAAAT-TGTAAAATAA
93246328 TTG-AAATTGTAA
1 TTGTAAATTGTAA
93246340 GTTGCTATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
17 4 0.14
18 4 0.14
19 4 0.14
20 16 0.57
ACGTcount: A:0.43, C:0.00, G:0.20, T:0.37
Consensus pattern (18 bp):
TTGTAAATTGTAAAATAA
Found at i:93247052 original size:46 final size:46
Alignment explanation
Indices: 93246985--93247106 Score: 165
Period size: 46 Copynumber: 2.7 Consensus size: 46
93246975 GATATGTGTA
* * *
93246985 CTAGTGTAAGGCATGTCTGGGACATGCATCAGC-TACATTATGAGAG
1 CTAGTGTAAGACATGTCTGGGACATGCATCAGCATACA-GACGAGAG
* * **
93247031 CTAGTGTAAGACATGTTTGGGACATGCATTAGCATTGAGACGAGAG
1 CTAGTGTAAGACATGTCTGGGACATGCATCAGCATACAGACGAGAG
93247077 CTAGTGTAAGACATGTCTGGGACATGCATC
1 CTAGTGTAAGACATGTCTGGGACATGCATC
93247107 GGCCTCGAGA
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
46 64 0.97
47 2 0.03
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (46 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCAGCATACAGACGAGAG
Found at i:93247232 original size:49 final size:48
Alignment explanation
Indices: 93247170--93247342 Score: 179
Period size: 49 Copynumber: 3.6 Consensus size: 48
93247160 TGTTGTGTGT
* * *
93247170 CAGTGCAAGACCTGTCTGGGACATGGCATCAACACCGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CCGATAGATGAAAGC
* * * * *
93247219 CAGTGTAAGACCTGTCTGGGACAAGACATCGGCCTCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACC-CGATAGATGAAAGC
* ** **
93247268 CAGTGTAAGACCTATCTGGGACATGGCATCGACTTTGAT-G-TGCTAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CCGATAGATGAAAGC
93247315 CAGTGTAAGACCATGTCTGGGACATGGC
1 CAGTGTAAGACC-TGTCTGGGACATGGC
93247343 GTCAGCATCT
Statistics
Matches: 102, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
47 16 0.16
48 15 0.15
49 71 0.70
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (48 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACCCGATAGATGAAAGC
Found at i:93247290 original size:142 final size:145
Alignment explanation
Indices: 93247072--93247342 Score: 376
Period size: 142 Copynumber: 1.9 Consensus size: 145
93247062 GCATTGAGAC
* *
93247072 GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCTAGTGTAAAAC
1 GAGAGCCAGTGTAAGACATGTCTGGGACAAGCATCGGCCTCGAGATATACAAGCTAGTGTAAAAC
* * *
93247137 CTATCTGGGACATGGCGTC-AGC-TTGTTGTG-T-GTCAGTGCAAGACC-TGTCTGGGACATGGC
66 CTATCTGGGACATGGCATCGA-CTTTGATGTGCTAGCCAGTGCAAGACCATGTCTGGGACATGGC
93247197 ATCAACACCGATAGAT
130 ATCAACACCGATAGAT
* *
93247213 GAGAGCCAGTGTAAGACCTGTCTGGGACAAGACATCGGCCTCGATATATGA-AAG-TCAGTGTAA
1 GAGAGCCAGTGTAAGACATGTCTGGGACAAG-CATCGGCCTCGAGATAT-ACAAGCT-AGTGTAA
* *
93247276 GACCTATCTGGGACATGGCATCGACTTTGATGTGCTAGCCAGTGTAAGACCATGTCTGGGACATG
63 AACCTATCTGGGACATGGCATCGACTTTGATGTGCTAGCCAGTGCAAGACCATGTCTGGGACATG
93247341 GC
128 GC
93247343 GTCAGCATCT
Statistics
Matches: 113, Mismatches: 9, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
141 29 0.26
142 47 0.42
143 9 0.08
144 1 0.01
145 12 0.11
146 15 0.13
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.24
Consensus pattern (145 bp):
GAGAGCCAGTGTAAGACATGTCTGGGACAAGCATCGGCCTCGAGATATACAAGCTAGTGTAAAAC
CTATCTGGGACATGGCATCGACTTTGATGTGCTAGCCAGTGCAAGACCATGTCTGGGACATGGCA
TCAACACCGATAGAT
Found at i:93252170 original size:16 final size:16
Alignment explanation
Indices: 93252149--93252186 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
93252139 GACTATATGA
93252149 CCATCTAAAAGAATTT
1 CCATCTAAAAGAATTT
93252165 CCATCTAAAAGAATTT
1 CCATCTAAAAGAATTT
*
93252181 TCATCT
1 CCATCT
93252187 TTGGAACTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.39, C:0.21, G:0.05, T:0.34
Consensus pattern (16 bp):
CCATCTAAAAGAATTT
Found at i:93256009 original size:22 final size:22
Alignment explanation
Indices: 93255979--93256045 Score: 73
Period size: 22 Copynumber: 2.9 Consensus size: 22
93255969 ATAGTAATTT
*
93255979 TTTAATTTTAA-AGTTTTCTTAA
1 TTTAATTTTAATAATTTTC-TAA
*
93256001 TTTATTTTTAATAATTTTCTAA
1 TTTAATTTTAATAATTTTCTAA
93256023 TTTAACATTTTAATAAATTTTCT
1 TTT-A-ATTTTAAT-AATTTTCT
93256046 TTAATTGTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
22 16 0.42
23 7 0.18
24 7 0.18
25 8 0.21
ACGTcount: A:0.33, C:0.06, G:0.01, T:0.60
Consensus pattern (22 bp):
TTTAATTTTAATAATTTTCTAA
Found at i:93256230 original size:30 final size:30
Alignment explanation
Indices: 93256190--93256253 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
93256180 TAAAAGAAGT
* * *
93256190 CCTCTTAAAATAATTAAAAATTATTTAAGC
1 CCTCGTAAAATAATTAAAAATCAATTAAGC
*
93256220 CCTCGTAAAATAATTAAGAATCAATTAAGC
1 CCTCGTAAAATAATTAAAAATCAATTAAGC
93256250 CCTC
1 CCTC
93256254 TACATTATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.44, C:0.19, G:0.06, T:0.31
Consensus pattern (30 bp):
CCTCGTAAAATAATTAAAAATCAATTAAGC
Found at i:93261146 original size:20 final size:20
Alignment explanation
Indices: 93261121--93261187 Score: 118
Period size: 20 Copynumber: 3.4 Consensus size: 20
93261111 ATTTTGATAT
93261121 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
93261141 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
93261161 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
93261181 ACATGAT
1 ACATGAT
93261188 GTATTCATAA
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
20 44 0.96
21 2 0.04
ACGTcount: A:0.36, C:0.10, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:93261148 original size:11 final size:11
Alignment explanation
Indices: 93261132--93261187 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
93261122 CATGATTGAT
93261132 ATGATATGCAC
1 ATGATATGCAC
*
93261143 ATGATATG--T
1 ATGATATGCAC
93261152 ATGATATGCAC
1 ATGATATGCAC
*
93261163 ATGATATG--T
1 ATGATATGCAC
93261172 ATGATATGCAC
1 ATGATATGCAC
93261183 ATGAT
1 ATGAT
93261188 GTATTCATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.34
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:93268683 original size:8 final size:8
Alignment explanation
Indices: 93268666--93268701 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
93268656 TTAAATAGAT
*
93268666 AAATGTCG
1 AAATGCCG
*
93268674 AAAAGCCG
1 AAATGCCG
93268682 AAATGCCG
1 AAATGCCG
93268690 AAATGCCG
1 AAATGCCG
93268698 AAAT
1 AAAT
93268702 TCTGGCATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.44, C:0.19, G:0.22, T:0.14
Consensus pattern (8 bp):
AAATGCCG
Found at i:93269232 original size:20 final size:20
Alignment explanation
Indices: 93269207--93269293 Score: 149
Period size: 20 Copynumber: 4.3 Consensus size: 20
93269197 ATTTTGATAT
93269207 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
93269227 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
93269247 ACATGATATGTACGATATGC
1 ACATGATATGTATGATATGC
93269267 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
93269287 ACATGAT
1 ACATGAT
93269294 GTATTCATAA
Statistics
Matches: 64, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
20 62 0.97
21 2 0.03
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:93269234 original size:11 final size:11
Alignment explanation
Indices: 93269218--93269293 Score: 83
Period size: 11 Copynumber: 7.5 Consensus size: 11
93269208 CATGATTGAT
93269218 ATGATATGCAC
1 ATGATATGCAC
*
93269229 ATGATATG--T
1 ATGATATGCAC
93269238 ATGATATGCAC
1 ATGATATGCAC
*
93269249 ATGATATGTAC
1 ATGATATGCAC
93269260 --GATATGCAC
1 ATGATATGCAC
*
93269269 ATGATATG--T
1 ATGATATGCAC
93269278 ATGATATGCAC
1 ATGATATGCAC
93269289 ATGAT
1 ATGAT
93269294 GTATTCATAA
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
9 24 0.45
11 29 0.55
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.33
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:93269241 original size:9 final size:9
Alignment explanation
Indices: 93269229--93269285 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
93269219 TGATATGCAC
93269229 ATGATATGT
1 ATGATATGT
*
93269238 ATGATATGCAC
1 ATGATATG--T
93269249 ATGATATGT
1 ATGATATGT
* *
93269258 ACGATATGCAC
1 ATGATATG--T
93269269 ATGATATGT
1 ATGATATGT
93269278 ATGATATG
1 ATGATATG
93269286 CACATGATGT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:93269376 original size:26 final size:27
Alignment explanation
Indices: 93269343--93269415 Score: 116
Period size: 26 Copynumber: 2.8 Consensus size: 27
93269333 GAGGAAGTGC
93269343 AAAA-GGGCTTATGCCCCAGTTTACCG
1 AAAATGGGCTTATGCCCCAGTTTACCG
93269369 -AAATGGGCTTATGCCCCAGTTTACCG
1 AAAATGGGCTTATGCCCCAGTTTACCG
*
93269395 AAAAT-GGCTTTTGCCCCAGTT
1 AAAATGGGCTTATGCCCCAGTT
93269416 ATTAAAAGAG
Statistics
Matches: 44, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
25 3 0.07
26 37 0.84
27 4 0.09
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (27 bp):
AAAATGGGCTTATGCCCCAGTTTACCG
Found at i:93273737 original size:23 final size:23
Alignment explanation
Indices: 93273711--93273755 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
93273701 TACAATCAAC
93273711 ATTACACATATC-AACAAGCCATA
1 ATTACACAT-TCAAACAAGCCATA
*
93273734 ATTAGACATTCAAAACAAGCCA
1 ATTACACATTC-AAACAAGCCA
93273756 AAATAAGTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 2 0.11
23 8 0.42
24 9 0.47
ACGTcount: A:0.49, C:0.24, G:0.07, T:0.20
Consensus pattern (23 bp):
ATTACACATTCAAACAAGCCATA
Found at i:93274925 original size:35 final size:35
Alignment explanation
Indices: 93274877--93275041 Score: 106
Period size: 35 Copynumber: 4.8 Consensus size: 35
93274867 ATCATCAGAA
*
93274877 TGCCATAGCCCAACTATGGTCTTACATATAAACAC
1 TGCCATAGTCCAACTATGGTCTTACATATAAACAC
* * ** ** * *
93274912 TGCCATGGTCCAACCATGGTCTTACACGTTCATAG
1 TGCCATAGTCCAACTATGGTCTTACATATAAACAC
* * * * *
93274947 TGCCATA-ACTAAGTTATGGTTTTATCAT-TAGA-A-
1 TGCCATAGTCCAA-CTATGGTCTTA-CATATAAACAC
*
93274980 TGCCATAG-CCAAATTATGGTCTTACATATAAACAC
1 TGCCATAGTCC-AACTATGGTCTTACATATAAACAC
* * *
93275015 TGCCATGGTCCAGCCATGGTCTTACAT
1 TGCCATAGTCCAACTATGGTCTTACAT
93275042 TCATAGTGTC
Statistics
Matches: 97, Mismatches: 25, Indels: 16
0.70 0.18 0.12
Matches are distributed among these distances:
32 3 0.03
33 21 0.22
34 7 0.07
35 62 0.64
36 4 0.04
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (35 bp):
TGCCATAGTCCAACTATGGTCTTACATATAAACAC
Found at i:93275020 original size:103 final size:101
Alignment explanation
Indices: 93274832--93275078 Score: 386
Period size: 103 Copynumber: 2.4 Consensus size: 101
93274822 AATTCGTTAT
* *
93274832 TTACATTCGTAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAGCCCAACTATGGT
1 TTACATTCATAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAGCCAAACTATGGT
93274897 CTTACATATAAACACTGCCATGGTCCAACCATGGTC
66 CTTACATATAAACACTGCCATGGTCCAACCATGGTC
** * * *
93274933 TTACACGTTCATAGTGCCATAACTAAGTTATGGTTTTATCATTAGAATGCCATAGCCAAATTATG
1 TTACA--TTCATAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAGCCAAACTATG
*
93274998 GTCTTACATATAAACACTGCCATGGTCCAGCCATGGTC
64 GTCTTACATATAAACACTGCCATGGTCCAACCATGGTC
*
93275036 TTACATTCATAGTGTCATAACCCAGTTATGGTCTTATCCATCA
1 TTACATTCATAGTGCCATAACCCAGTTATGGTCTTAT-CATCA
93275079 ATTCATCATT
Statistics
Matches: 130, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
101 33 0.25
102 4 0.03
103 93 0.72
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (101 bp):
TTACATTCATAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAGCCAAACTATGGT
CTTACATATAAACACTGCCATGGTCCAACCATGGTC
Found at i:93276624 original size:39 final size:40
Alignment explanation
Indices: 93276581--93276802 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
93276571 TCCTCGTTCA
* * * * *
93276581 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
93276620 AATGCCTTCGGGAC-TAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
93276659 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
93276699 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
93276739 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
93276779 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
93276803 CAGCATTCAA
Statistics
Matches: 159, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
38 19 0.12
39 31 0.19
40 101 0.64
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:93276811 original size:41 final size:41
Alignment explanation
Indices: 93276734--93276811 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
93276724 TTAGTATCTC
* * *
93276734 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
93276775 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
93276812 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:93284577 original size:40 final size:39
Alignment explanation
Indices: 93284465--93284685 Score: 239
Period size: 40 Copynumber: 5.6 Consensus size: 39
93284455 TCCTCGTTCA
* * * * *
93284465 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
*
93284504 AATGCCTTCGGGAC-TAACCCGGATTTAACAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
93284542 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* *
93284582 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* ** * * * *
93284622 AAAGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
* *
93284662 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
93284686 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
38 22 0.14
39 50 0.31
40 85 0.53
41 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
Found at i:93284645 original size:79 final size:79
Alignment explanation
Indices: 93284468--93284685 Score: 235
Period size: 79 Copynumber: 2.8 Consensus size: 79
93284458 TCGTTCAAAT
* * * * *
93284468 GCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGAC-TAACCCGGATTTAA
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAATGCCTTCGGGACTTAACCCGGATTTAA
*
93284532 CAACTCGCACGAAT
66 CAACTCGCACGAAA
93284546 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC-AATGCCTTCGGGACTTAACCCGGATTTA
** *
93284611 GTATCTCGCAC-AAA
65 ACAACTCGCACGAAA
** * * * * * *
93284625 GCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACAATGCCTTCGGGACTTAACCCGGA
93284686 CAGCATTCAA
Statistics
Matches: 119, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
78 34 0.29
79 59 0.50
80 26 0.22
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
GCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAATGCCTTCGGGACTTAACCCGGATTTAA
CAACTCGCACGAAA
Found at i:93297591 original size:39 final size:40
Alignment explanation
Indices: 93297548--93297715 Score: 148
Period size: 40 Copynumber: 4.2 Consensus size: 40
93297538 CTCGTTCAAG
* * * *
93297548 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* *
93297587 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
93297627 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * *
93297667 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
93297707 TGCCTTCGG
1 TGCCTTCGG
93297716 ATCTTAGTCC
Statistics
Matches: 111, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
39 26 0.23
40 81 0.73
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:93297699 original size:80 final size:80
Alignment explanation
Indices: 93297583--93297768 Score: 229
Period size: 80 Copynumber: 2.3 Consensus size: 80
93297573 AGTAACTCAT
* * *
93297583 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTC-GGATCTTAACCCG
*
93297647 GA-ATTAGT-A-TCTCGC
65 GATA-TAGTCACT-TAGC
**
93297662 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGATCTTAACCC
93297726 GGATATAGTCACTTAGC
64 GGATATAGTCACTTAGC
*
93297743 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
93297769 CAGCATTCAA
Statistics
Matches: 94, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
79 11 0.12
80 72 0.77
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:93297728 original size:40 final size:40
Alignment explanation
Indices: 93297585--93297768 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
93297575 TAACTCATAC
* *
93297585 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
93297625 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
93297665 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
** * * *
93297705 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
93297746 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
93297769 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
39 8 0.06
40 105 0.85
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:93304318 original size:79 final size:81
Alignment explanation
Indices: 93304209--93304391 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
93304199 TACTCGTTCA
* *
93304209 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
93304272 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
93304289 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
93304352 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
93304368 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
93304392 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:93304391 original size:40 final size:40
Alignment explanation
Indices: 93304188--93304391 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
93304178 CGGAATTTAA
** *
93304188 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
93304228 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
93304268 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
93304307 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
93304347 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
93304387 CCGGA
1 CCGGA
93304392 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:93305039 original size:37 final size:37
Alignment explanation
Indices: 93304989--93305076 Score: 176
Period size: 37 Copynumber: 2.4 Consensus size: 37
93304979 TAGGTACCTA
93304989 TGGCCGAACATACACATAACTTATGTACTTATTCATG
1 TGGCCGAACATACACATAACTTATGTACTTATTCATG
93305026 TGGCCGAACATACACATAACTTATGTACTTATTCATG
1 TGGCCGAACATACACATAACTTATGTACTTATTCATG
93305063 TGGCCGAACATACA
1 TGGCCGAACATACA
93305077 TGTCTATGTT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 51 1.00
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.30
Consensus pattern (37 bp):
TGGCCGAACATACACATAACTTATGTACTTATTCATG
Found at i:93305713 original size:24 final size:24
Alignment explanation
Indices: 93305669--93305714 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
93305659 AGGATGGACA
*
93305669 CATTTTTTTTTCTTTTGTTTTCAT
1 CATTTTTTTCTCTTTTGTTTTCAT
93305693 CATTTTCTTTCTCTTTT-TTTTC
1 CATTTT-TTTCTCTTTTGTTTTC
93305715 CATTTCTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.07, C:0.17, G:0.02, T:0.74
Consensus pattern (24 bp):
CATTTTTTTCTCTTTTGTTTTCAT
Found at i:93309000 original size:79 final size:81
Alignment explanation
Indices: 93308891--93309073 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
93308881 TACTCGTTCA
* *
93308891 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
93308954 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
93308971 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
93309034 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
93309050 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
93309074 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:93309073 original size:40 final size:40
Alignment explanation
Indices: 93308870--93309073 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
93308860 CGGAATTTAA
** *
93308870 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
93308910 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
93308950 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
93308989 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
93309029 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
93309069 CCGGA
1 CCGGA
93309074 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:93309722 original size:37 final size:37
Alignment explanation
Indices: 93309672--93309759 Score: 176
Period size: 37 Copynumber: 2.4 Consensus size: 37
93309662 AGGCTACCTA
93309672 TGGCCGAACATACACATAACTTATGTACTTATTCATG
1 TGGCCGAACATACACATAACTTATGTACTTATTCATG
93309709 TGGCCGAACATACACATAACTTATGTACTTATTCATG
1 TGGCCGAACATACACATAACTTATGTACTTATTCATG
93309746 TGGCCGAACATACA
1 TGGCCGAACATACA
93309760 TGTCTATGTT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 51 1.00
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.30
Consensus pattern (37 bp):
TGGCCGAACATACACATAACTTATGTACTTATTCATG
Found at i:93317360 original size:40 final size:40
Alignment explanation
Indices: 93317315--93317961 Score: 1062
Period size: 40 Copynumber: 16.2 Consensus size: 40
93317305 CAAGCTCAAT
* * * * *
93317315 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
* * *
93317355 TGCCTTTGGGTCTTAGCCCGGATATATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTATCCCGGATATATCAA-TTCGCACAAA
*
93317395 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
* * * *
93317435 CGCCGTCGGGTCTTAGCCCGGATATATCAGTTCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
93317475 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
93317515 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
*
93317555 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACTAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
*
93317595 TGCCTTCGGGTCTTATCCCGGATATATCAATTCTCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
93317635 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
93317675 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
*
93317715 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGTACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
*
93317755 TGCCTTCGGGTCTTATCTCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
* * *
93317795 TGCCTTCAGGTCTTAGCCCGGATATATCAATTTGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
*
93317835 TGCCTTCGGGTCTTAACCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
* *
93317875 TGCCTTCGAGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
*
93317915 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
93317955 TGCCTTC
1 TGCCTTC
93317962 ATGCACACAT
Statistics
Matches: 572, Mismatches: 33, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
39 2 0.00
40 569 0.99
41 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (40 bp):
TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
Found at i:93326613 original size:52 final size:52
Alignment explanation
Indices: 93326535--93326639 Score: 210
Period size: 52 Copynumber: 2.0 Consensus size: 52
93326525 TTCACCAATG
93326535 ATGATGATTCCAACATGTTTTGGTATGAGCTTTGCAGCAATGATGTGAATCC
1 ATGATGATTCCAACATGTTTTGGTATGAGCTTTGCAGCAATGATGTGAATCC
93326587 ATGATGATTCCAACATGTTTTGGTATGAGCTTTGCAGCAATGATGTGAATCC
1 ATGATGATTCCAACATGTTTTGGTATGAGCTTTGCAGCAATGATGTGAATCC
93326639 A
1 A
93326640 CCGCACAATT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (52 bp):
ATGATGATTCCAACATGTTTTGGTATGAGCTTTGCAGCAATGATGTGAATCC
Found at i:93331846 original size:26 final size:26
Alignment explanation
Indices: 93331810--93331919 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
93331800 CATGAAATTC
93331810 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
93331836 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
93331862 TTATCATGGAATATTTACCTAATCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
93331888 TTGTCATGGAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
93331914 TTATCA
1 TTATCA
93331920 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.35, C:0.25, G:0.06, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:93349138 original size:46 final size:46
Alignment explanation
Indices: 93349088--93349262 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
93349078 TGGTTGAGCA
93349088 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
93349134 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T-G
* * * *
93349178 GCATCGAACTCGTTGAGTTGAGTCCGAGTTTACTTGTGGATGCGAACG
1 TC--CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
93349226 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
93349263 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 2 0.02
45 2 0.02
46 86 0.81
47 1 0.01
48 2 0.02
49 4 0.04
50 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:93349247 original size:92 final size:93
Alignment explanation
Indices: 93349085--93349255 Score: 290
Period size: 92 Copynumber: 1.8 Consensus size: 93
93349075 GGATGGTTGA
* *
93349085 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
93349150 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
93349178 GCAT-CGAACTCGTTGAGTTGAGTCCGAGTTTACTTGTGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
93349242 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
93349256 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 69 0.95
93 4 0.05
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:93356709 original size:46 final size:46
Alignment explanation
Indices: 93356659--93356834 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
93356649 TGGTTGAGCA
93356659 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
93356705 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
93356750 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
93356798 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
93356835 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 29 0.27
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:93356815 original size:93 final size:93
Alignment explanation
Indices: 93356656--93356827 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
93356646 GGATGGTTGA
* *
93356656 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
93356721 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
93356749 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
93356814 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
93356828 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:93359093 original size:49 final size:48
Alignment explanation
Indices: 93359034--93359209 Score: 166
Period size: 49 Copynumber: 3.7 Consensus size: 48
93359024 ACATCTAATT
93359034 CGATGCCATGTCCCAGACAGGTCTTACACTAACTTCCATACATCAAGTC
1 CGATGCCATGTCCCAGACAGGTCTTACACTAAC-TCCATACATCAAGTC
* * ** * * *
93359083 CGATGTCATGTCCTAGACAGGTCTTACACTGGCTCTCACT-TATC-TGTGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTAACTC-CA-TACATCAAGT-C
* * *
93359132 CGATGCCATGTCCCAGACAGGTCTTACACTGA---CACACCTCAAG-C
1 CGATGCCATGTCCCAGACAGGTCTTACACTAACTCCATACATCAAGTC
* *
93359176 CGATACCATGTCCCAGACAGGTTTTACACTAACT
1 CGATGCCATGTCCCAGACAGGTCTTACACTAACT
93359210 TTGTGACAGC
Statistics
Matches: 102, Mismatches: 18, Indels: 17
0.74 0.13 0.12
Matches are distributed among these distances:
44 29 0.28
45 4 0.04
46 1 0.01
48 4 0.04
49 63 0.62
50 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTAACTCCATACATCAAGTC
Found at i:93360906 original size:39 final size:40
Alignment explanation
Indices: 93360811--93361032 Score: 257
Period size: 39 Copynumber: 5.7 Consensus size: 40
93360801 TTGAATGATG
*
93360811 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
93360849 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
93360890 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
93360929 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
93360968 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
93361006 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
93361033 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 11, Indels: 19
0.84 0.06 0.10
Matches are distributed among these distances:
38 1 0.01
39 123 0.76
40 26 0.16
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:93361054 original size:78 final size:78
Alignment explanation
Indices: 93360863--93361055 Score: 207
Period size: 78 Copynumber: 2.5 Consensus size: 78
93360853 GGACTAAGAT
** * *
93360863 CCGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAGCCCGAAGGCATTTGTGCGAGATACTA
*
93360927 ATTCCGGGCTAAGC
65 ATACCGGGCTAAGC
** * *
93360941 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTTGTGCGA-ATTACT-
1 CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGCCCGAAGGCATTTGTGCGAGA-TACTA
*
93361004 ATAACCGGGCTATGTC
65 AT-ACCGGGCTAAG-C
*
93361020 CCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAA
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAA
93361056 ATTCTGAAGG
Statistics
Matches: 101, Mismatches: 9, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
77 4 0.04
78 72 0.71
79 25 0.25
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGCCCGAAGGCATTTGTGCGAGATACTAA
TACCGGGCTAAGC
Found at i:93375460 original size:43 final size:42
Alignment explanation
Indices: 93375413--93375506 Score: 100
Period size: 42 Copynumber: 2.2 Consensus size: 42
93375403 TCCCAGATGT
* * **
93375413 GGTCTTACATGTAATTCAGTAT-TGATGCCTCTGTCCCAGACAG
1 GGTCTTACATG-AAATCAG-ATGCGATGCCAATGTCCCAGACAG
* * *
93375456 GGTCTTATATGAAATCAGATGCGATGCCAATGTCCCGGACAT
1 GGTCTTACATGAAATCAGATGCGATGCCAATGTCCCAGACAG
93375498 GGTCTTACA
1 GGTCTTACA
93375507 CATAAATTTC
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
41 2 0.05
42 30 0.71
43 10 0.24
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (42 bp):
GGTCTTACATGAAATCAGATGCGATGCCAATGTCCCAGACAG
Found at i:93375552 original size:37 final size:37
Alignment explanation
Indices: 93375511--93375585 Score: 134
Period size: 37 Copynumber: 2.0 Consensus size: 37
93375501 CTTACACATA
93375511 AATTTCCAATCGAGGACTGCGA-CCCAGACACGGTCTT
1 AATTTCCAATCGAGGACTGC-ATCCCAGACACGGTCTT
93375548 AATTTCCAATCGAGGACTGCATCCCAGACACGGTCTT
1 AATTTCCAATCGAGGACTGCATCCCAGACACGGTCTT
93375585 A
1 A
93375586 CACGATAATT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
36 1 0.03
37 36 0.97
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (37 bp):
AATTTCCAATCGAGGACTGCATCCCAGACACGGTCTT
Found at i:93390164 original size:41 final size:43
Alignment explanation
Indices: 93390046--93390208 Score: 138
Period size: 45 Copynumber: 3.8 Consensus size: 43
93390036 TAGGATTTTT
* * *
93390046 GATATGTGTTCTCGTGTAAGACCACGTCTGGGAC-GTTGGCATC
1 GATATGTGATATCGTGTAAGACCATGTCTGGGACAG-TGGCATC
* * *
93390089 AATATATGTGGTTAT-GTGTAAGACCATGTCTGGGACA-TCGGCATT
1 --GATATGT-GATATCGTGTAAGACCATGTCTGGGACAGT-GGCATC
* * *
93390134 G-TATTTGAT-TCGTGTAAGACCCTGTTTGGGACAGTGGCATC
1 GATATGTGATATCGTGTAAGACCATGTCTGGGACAGTGGCATC
* * *
93390175 GATATGTGATATCATGTAAGACCACGTATGGGAC
1 GATATGTGATATCGTGTAAGACCATGTCTGGGAC
93390209 GTTGGCGTTG
Statistics
Matches: 96, Mismatches: 15, Indels: 16
0.76 0.12 0.13
Matches are distributed among these distances:
40 1 0.01
41 28 0.29
42 12 0.12
43 19 0.20
44 1 0.01
45 31 0.32
46 4 0.04
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (43 bp):
GATATGTGATATCGTGTAAGACCATGTCTGGGACAGTGGCATC
Found at i:93390410 original size:20 final size:20
Alignment explanation
Indices: 93390385--93390446 Score: 71
Period size: 20 Copynumber: 3.4 Consensus size: 20
93390375 GTTGCAAATC
93390385 ATATATGATGTAAATGAAAA
1 ATATATGATGTAAATGAAAA
**
93390405 ATATATG-TGT---T-AATC
1 ATATATGATGTAAATGAAAA
93390420 ATATATGATGTAAATGAAAA
1 ATATATGATGTAAATGAAAA
93390440 ATATATG
1 ATATATG
93390447 TGTTTATGGA
Statistics
Matches: 33, Mismatches: 4, Indels: 10
0.70 0.09 0.21
Matches are distributed among these distances:
15 9 0.27
16 4 0.12
19 4 0.12
20 16 0.48
ACGTcount: A:0.48, C:0.02, G:0.15, T:0.35
Consensus pattern (20 bp):
ATATATGATGTAAATGAAAA
Found at i:93390424 original size:35 final size:35
Alignment explanation
Indices: 93390381--93390450 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
93390371 ATGTGTTGCA
93390381 AATCATATATGATGTAAATGAAAAATATATGTGTT
1 AATCATATATGATGTAAATGAAAAATATATGTGTT
93390416 AATCATATATGATGTAAATGAAAAATATATGTGTT
1 AATCATATATGATGTAAATGAAAAATATATGTGTT
93390451 TATGGAAAGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.46, C:0.03, G:0.14, T:0.37
Consensus pattern (35 bp):
AATCATATATGATGTAAATGAAAAATATATGTGTT
Found at i:93392828 original size:16 final size:17
Alignment explanation
Indices: 93392807--93392847 Score: 57
Period size: 16 Copynumber: 2.4 Consensus size: 17
93392797 TTATATTATA
93392807 TATTATAA-AATTATTT
1 TATTATAAGAATTATTT
*
93392823 TATTATAAGTATTATTT
1 TATTATAAGAATTATTT
93392840 TAATTATA
1 T-ATTATA
93392848 TATTATTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.36
17 8 0.36
18 6 0.27
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.56
Consensus pattern (17 bp):
TATTATAAGAATTATTT
Found at i:93392853 original size:16 final size:16
Alignment explanation
Indices: 93392816--93392893 Score: 59
Period size: 16 Copynumber: 4.6 Consensus size: 16
93392806 ATATTATAAA
93392816 ATTATTTT-ATTATAAGT
1 ATTATTTTAATTAT-A-T
93392833 ATTATTTTAATTATAT
1 ATTATTTTAATTATAT
*
93392849 ATTATTATTACTTATTATGT
1 ATTATT-TTA---ATTATAT
** *
93392869 ATTATTTTTCTTAAAT
1 ATTATTTTAATTATAT
93392885 ATTATTTTA
1 ATTATTTTA
93392894 CATCTCTTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
16 19 0.38
17 12 0.24
18 5 0.10
19 2 0.04
20 12 0.24
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (16 bp):
ATTATTTTAATTATAT
Found at i:93392865 original size:20 final size:18
Alignment explanation
Indices: 93392816--93392874 Score: 66
Period size: 20 Copynumber: 3.2 Consensus size: 18
93392806 ATATTATAAA
*
93392816 ATTATTTTATTATA-AGT
1 ATTATTTTATTATATATT
93392833 ATTATTTTAATTATATATT
1 ATTATTTT-ATTATATATT
*
93392852 ATTATTACTTATTATGTATT
1 ATTATT--TTATTATATATT
93392872 ATT
1 ATT
93392875 TTTCTTAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
17 8 0.22
18 6 0.17
19 8 0.22
20 12 0.33
21 2 0.06
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (18 bp):
ATTATTTTATTATATATT
Found at i:93392871 original size:36 final size:34
Alignment explanation
Indices: 93392812--93392894 Score: 98
Period size: 36 Copynumber: 2.4 Consensus size: 34
93392802 TTATATATTA
93392812 TAAA-ATTATTTTA-TTATAAGTATTATTTTAAT
1 TAAATATTATTTTACTTATAAGTATTATTTTAAT
* * **
93392844 TATATATTATTATTACTTATTATGTATTATTTTTCT
1 TAAATATTATT-TTACTTA-TAAGTATTATTTTAAT
93392880 TAAATATTATTTTAC
1 TAAATATTATTTTAC
93392895 ATCTCTTTTA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
32 3 0.07
33 6 0.14
34 3 0.07
35 7 0.17
36 23 0.55
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.59
Consensus pattern (34 bp):
TAAATATTATTTTACTTATAAGTATTATTTTAAT
Found at i:93392873 original size:10 final size:9
Alignment explanation
Indices: 93392816--93392874 Score: 50
Period size: 10 Copynumber: 6.3 Consensus size: 9
93392806 ATATTATAAA
93392816 ATTATT-TT
1 ATTATTATT
* *
93392824 ATTATAAGT
1 ATTATTATT
93392833 ATTATT-TT
1 ATTATTATT
93392841 AATTATATATT
1 -ATTAT-TATT
93392852 ATTATTACTT
1 ATTATTA-TT
93392862 ATTATGTATT
1 ATTAT-TATT
93392872 ATT
1 ATT
93392875 TTTCTTAAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
8 6 0.15
9 13 0.32
10 18 0.44
11 4 0.10
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (9 bp):
ATTATTATT
Found at i:93392890 original size:3 final size:3
Alignment explanation
Indices: 93392816--93392874 Score: 50
Period size: 3 Copynumber: 19.0 Consensus size: 3
93392806 ATATTATAAA
* *
93392816 ATT ATT -TT ATT ATA AGT ATT ATT -TT AATT ATAT ATT ATT ATT ACTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT AT-T ATT ATT ATT A-TT
93392862 ATT ATGT ATT ATT
1 ATT AT-T ATT ATT
93392875 TTTCTTAAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
2 4 0.09
3 31 0.67
4 11 0.24
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:93393000 original size:44 final size:42
Alignment explanation
Indices: 93392925--93393019 Score: 97
Period size: 44 Copynumber: 2.2 Consensus size: 42
93392915 TATTTTCACA
*
93392925 TATATTATATTTATTAATTATATATATTGTTTTATATGTTAC-TT
1 TATATTATATCTATTAATTATATATATTG-TTTATA--TTACATT
* * *
93392969 TATATTATATCTATTATTTTTCT-TATATGTTTATATTACATT
1 TATATTATATCTATTAATTATATATAT-TGTTTATATTACATT
93393011 T-TATTATAT
1 TATATTATAT
93393020 AATCTTTATT
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
41 12 0.27
42 3 0.07
43 9 0.20
44 21 0.47
ACGTcount: A:0.31, C:0.04, G:0.03, T:0.62
Consensus pattern (42 bp):
TATATTATATCTATTAATTATATATATTGTTTATATTACATT
Found at i:93393328 original size:7 final size:7
Alignment explanation
Indices: 93393316--93393340 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
93393306 ACTATGTTAT
93393316 TATATTA
1 TATATTA
93393323 TATATTA
1 TATATTA
93393330 TATATTA
1 TATATTA
93393337 TATA
1 TATA
93393341 CTATTTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
TATATTA
Found at i:93399360 original size:36 final size:37
Alignment explanation
Indices: 93399288--93399395 Score: 173
Period size: 36 Copynumber: 2.9 Consensus size: 37
93399278 AGCTCAGATG
* *
93399288 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
93399325 AAATCTCCACACGTAGTCATC-GGTCTTACCTGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
93399361 AAATCTCCACACATAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
93399396 ATATATTTCC
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
36 34 0.52
37 31 0.48
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:93399703 original size:48 final size:48
Alignment explanation
Indices: 93399621--93400350 Score: 1034
Period size: 48 Copynumber: 14.9 Consensus size: 48
93399611 ATATATTTCA
*
93399621 CACATT-GACCATTCGGC-TTACCACATATGCATATCTCATACATATTT
1 CACATTAG-CCATTCGGCTTTACCACATATACATATCTCATACATATTT
*
93399668 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATATTT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCTC----ATACATATTT
* * * * * *
93399720 CACTTTAACCATCCAGCTTTACCACATACACATATCTCATATATATATATTT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCTC----ATACATATTT
*
93399772 CGCATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
*
93399820 CACATTAGCCATTCGGCTTTACCACATATACATGTCTCATACATATTT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
*
93399868 CACATTAGCCATTCGGCTTTGCCACATATACATATCTCATACATATTT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
*
93399916 CACATTAGCCATTCGGCTTTACCACATATGCATATCTCATACATATTT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
* *
93399964 CACATTAGCCATTCGGATTTACCACATATACATATCTCATATATATATATTT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCTC----ATACATATTT
** * * * *
93400016 CACATTAATCATCCAGCTTTACCACATACACATATCTCATATATATATATTT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCTC----ATACATATTT
*
93400068 CGCATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
93400116 CACATTAGCCATTCGGCTTTACCACATATACAT-TCTCATACATATTT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
* *
93400163 CACATTAGCCATTCGGCTTTACCACATATACATTTCTCATACACATTT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
*
93400211 CACATTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
93400259 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
** * *
93400307 CACATTAGCCATTCGAATTTACCACACATACATATCTTATACAT
1 CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
93400351 CAATTTCAGC
Statistics
Matches: 626, Mismatches: 46, Indels: 21
0.90 0.07 0.03
Matches are distributed among these distances:
47 62 0.10
48 389 0.62
52 175 0.28
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
CACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTT
Found at i:93403656 original size:28 final size:27
Alignment explanation
Indices: 93403625--93403729 Score: 95
Period size: 28 Copynumber: 3.7 Consensus size: 27
93403615 CTGACTGATT
*
93403625 TCGCACACATAGCGCTCGATTAAAGAAC
1 TCGCACACATAGTGCTC-ATTAAAGAAC
* *
93403653 TCGCACACATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTG-CTC-ATTA-AAGAAC
*
93403682 TCGCACACATAGTGCTCAGTTGAAGAAC
1 TCGCACACATAGTGCTCA-TTAAAGAAC
* *
93403710 TTGCACACACAGTGCCTCAT
1 TCGCACACATAGTG-CTCAT
93403730 AACTCCAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
27 2 0.03
28 33 0.52
29 27 0.43
30 1 0.02
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.22
Consensus pattern (27 bp):
TCGCACACATAGTGCTCATTAAAGAAC
Found at i:93403800 original size:40 final size:40
Alignment explanation
Indices: 93403756--93404124 Score: 546
Period size: 40 Copynumber: 9.2 Consensus size: 40
93403746 CCTTCGAGGT
* *
93403756 TTAGCCTGGATATATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
*
93403796 TTAGCCCGGATACATCACTAGCACGAGTGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
*
93403836 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
93403876 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
93403916 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCAGG-AC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTC-GGAAC
* * *
93403956 TTAGCCCGGATATAACA-TCAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACT-AGCACGAATGCTCTTCGGAAC
* **
93403996 TTAGCCCGGATACATTACTAGCACGAATGCTCTTCGGATT
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
** *
93404036 TTAGCCCTTATACATCACTAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
* * *
93404076 TTAGCCCGGATATAACA-TCAGCACGAATGCTCTTCGGGAC
1 TTAGCCCGGATACATCACT-AGCACGAATGCTCTTCGGAAC
93404116 TTAGCCCGG
1 TTAGCCCGG
93404125 CTATATAACT
Statistics
Matches: 300, Mismatches: 24, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
39 4 0.01
40 293 0.98
41 3 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAAC
Found at i:93405445 original size:37 final size:37
Alignment explanation
Indices: 93405386--93405494 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
93405376 AGCTCAGATG
* *
93405386 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
93405423 AAATCTCCACACGTAGTCATCGGGTCTTACCCGAACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
93405460 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
93405495 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:93405696 original size:48 final size:48
Alignment explanation
Indices: 93405641--93406708 Score: 1617
Period size: 48 Copynumber: 22.1 Consensus size: 48
93405631 ACACATCGCC
*
93405641 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
93405689 TACATATTTCACACTAGCCATTCGGCTTTACCAGATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* * *
93405737 TATATATGTTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTCA
1 TACATA--TTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
93405787 TACATATTTCACATTAGCCATT-GGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * * * *
93405836 TATATATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
93405886 TATATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* * *
93405934 TACATATTTCAGATTAGCCATTTGGCTTTACCACATATACATGTCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
93405982 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC-CA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
93406029 TACATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
93406077 TACATATTTCACATTACCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * * * *
93406127 TATATATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
93406177 TATATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
93406225 TACATATTTCAGATTAGCCATTCGGCTTTACCACATATACATGTCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
93406273 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC-CA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
93406320 TACATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
93406368 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* * *
93406416 TATATATTTCACATTAACCA-TC-GCTTTACCACATACACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
93406464 TATATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
93406512 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATGTCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
93406560 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATTTCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
93406608 TACACATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
** * *
93406656 TACATATTTCACATTAGCCATTCGAATTTACCACACATACATATCTTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
93406704 TACAT
1 TACAT
93406709 CAATTTCAGC
Statistics
Matches: 940, Mismatches: 65, Indels: 30
0.91 0.06 0.03
Matches are distributed among these distances:
46 22 0.02
47 116 0.12
48 560 0.60
49 24 0.03
50 218 0.23
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:93406184 original size:291 final size:292
Alignment explanation
Indices: 93405641--93406701 Score: 1895
Period size: 291 Copynumber: 3.7 Consensus size: 292
93405631 ACACATCGCC
* * *
93405641 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATGTCTCATACATATTTCACATTAG
* * *
93405706 CCATTCGGCTTTACCAGATATACATATCTCATATATATGTTTCACATT-GACCATTCAGCTTTAC
66 CCATTCGGCTTTACCACATATACATATCTCATACATA--TTTCACATTAG-CCATTCGGCTTTAC
93405770 CACATATGCATATCTCATACATATTTCACATTAGCCATT-GGCTTTACCACATATACATATCTCA
128 CACATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
93405834 TATATATATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATATATATATTTCGCA
193 TATATATATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATATATATATTTCGCA
93405899 TTAGCCATTCGGCTTTACCACATATACATATCTCA
258 TTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
93405934 TACATATTTCAGATTAGCCATTTGGCTTTACCACATATACATGTCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATGTCTCATACATATTTCACATTAG
93405999 CCATTCGGCTTTACCACATATACATATC-CATACATATTTCACATTAGCCATTCGGCTTTACCAC
66 CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
*
93406063 ATATGCATATCTCATACATATTTCACATTACCCATTCGGCTTTACCACATATACATATCTCATAT
131 ATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAT
93406128 ATATATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATATATATATTTCGCATTA
196 ATATATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATATATATATTTCGCATTA
93406193 GCCATTCGGCTTTACCACATATACATATCTCA
261 GCCATTCGGCTTTACCACATATACATATCTCA
*
93406225 TACATATTTCAGATTAGCCATTCGGCTTTACCACATATACATGTCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATGTCTCATACATATTTCACATTAG
93406290 CCATTCGGCTTTACCACATATACATATC-CATACATATTTCACATTAGCCATTCGGCTTTACCAC
66 CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
93406354 ATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--AT
131 ATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAT
93406417 ATATATTTCACATTAACCAT-C-GCTTTACCACATACACATATCTCATATATATATTTCGCATTA
196 ATATATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATATATATATTTCGCATTA
93406480 GCCATTCGGCTTTACCACATATACATATCTCA
261 GCCATTCGGCTTTACCACATATACATATCTCA
93406512 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATGTCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATGTCTCATACATATTTCACATTAG
* *
93406577 CCATTCGGCTTTACCACATATACATTTCTCATACACATTTCACATTAGCCATTCGGCTTTACCAC
66 CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
* ** *
93406642 ATATACATATCTCATACATATTTCACATTAGCCATTCGAATTTACCACACATACATATCT
131 ATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
93406702 TATACATCAA
Statistics
Matches: 747, Mismatches: 18, Indels: 11
0.96 0.02 0.01
Matches are distributed among these distances:
287 165 0.22
288 92 0.12
289 22 0.03
290 60 0.08
291 314 0.42
292 7 0.01
293 87 0.12
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.36
Consensus pattern (292 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATGTCTCATACATATTTCACATTAG
CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
ATATGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAT
ATATATTTCACATTAACCATCCAGCTTTACCACATACACATATCTCATATATATATTTCGCATTA
GCCATTCGGCTTTACCACATATACATATCTCA
Found at i:93413805 original size:40 final size:38
Alignment explanation
Indices: 93413754--93413972 Score: 221
Period size: 40 Copynumber: 5.6 Consensus size: 38
93413744 GCTACTCGTT
*
93413754 CAATGCCTTCGGGACATAGCCC-GATTATAGTAACTCGCA
1 CAATGCCTTCGGG-CTTAGCCCGGATT-TAGTAACTCGCA
*
93413793 CAGATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CA-ATGCCTTCGGG-CTTAGCCCGGATTTAGTAACTCGCA
* *
93413833 CCAATGCCTTCGGGCTTAGCCCGGAATT-GTAACTCAC-
1 -CAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCA
*
93413870 CAATGCCTT-GGGCTTAGCCCGGAATTAGTAACTCGCA
1 CAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
93413907 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA
1 C-AATGCCTTCGG-GCTTAGCCCGGATTTAGTAAC-TCGCA
*
93413948 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAATGCCTTCGGG-CTTAGCCCGGA
93413973 CATCATTCGA
Statistics
Matches: 154, Mismatches: 16, Indels: 19
0.81 0.08 0.10
Matches are distributed among these distances:
35 17 0.11
36 17 0.11
37 1 0.01
38 16 0.10
39 16 0.10
40 76 0.49
41 11 0.07
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (38 bp):
CAATGCCTTCGGGCTTAGCCCGGATTTAGTAACTCGCA
Found at i:93413900 original size:74 final size:79
Alignment explanation
Indices: 93413754--93413972 Score: 220
Period size: 74 Copynumber: 2.8 Consensus size: 79
93413744 GCTACTCGTT
*
93413754 CAATGCCTTCGGGACATAGCCCGATTATAGTAACTCGCACAGATGCCTTCGGGACTTAACCCGGA
1 CAATGCCTTCGGGACATAGCCCGA-TATAGTAACTCACACAGATGCCTTCGGGACTTAACCCGGA
*
93413819 TTTAGTAACTCGCAC
65 ATTAGTAACTCGCAC
* * *
93413834 CAATGCCTTCGGG-CTTAGCCCGGA-ATTGTAACTCAC-CA-ATGCCTT-GGG-CTTAGCCCGGA
1 CAATGCCTTCGGGACATAGCCC-GATATAGTAACTCACACAGATGCCTTCGGGACTTAACCCGGA
93413893 ATTAGTAACTCGCAC
65 ATTAGTAACTCGCAC
* * * * * * * *
93413908 AAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACA-AAGCCTTCGGGACTTAGCCCG
1 CAATGCCTTCGGGA-CATAG-CCCGATATAGTAACTCA-CACAGATGCCTTCGGGACTTAACCCG
93413971 GA
63 GA
93413973 CATCATTCGA
Statistics
Matches: 119, Mismatches: 11, Indels: 18
0.80 0.07 0.12
Matches are distributed among these distances:
73 2 0.02
74 33 0.28
75 10 0.08
76 17 0.14
77 3 0.03
78 18 0.15
79 10 0.08
80 26 0.22
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (79 bp):
CAATGCCTTCGGGACATAGCCCGATATAGTAACTCACACAGATGCCTTCGGGACTTAACCCGGAA
TTAGTAACTCGCAC
Found at i:93413932 original size:114 final size:117
Alignment explanation
Indices: 93413754--93413972 Score: 279
Period size: 114 Copynumber: 1.9 Consensus size: 117
93413744 GCTACTCGTT
* *
93413754 CAATGCCTTCGGGACATAGCCCGATTATAGTAACTCGCACAGATGCCTTCGGGACTTAACCCGGA
1 CAATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
* * *
93413819 TTTAGTAAC-TCGCACCAATGCCTTCGGG-CTTAGCCCGGAATTGTAACTCAC
66 TATAGTAACTTAGCA-CAAAGCCTTCGGGACTTAGCCCGGAATTGTAACTCAC
* **
93413870 CAATGCCTT-GGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAATGCCTTCGGGACATAGCCC-GAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
93413931 GATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
93413973 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
113 3 0.03
114 56 0.63
115 21 0.24
116 9 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (117 bp):
CAATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTGTAACTCAC
Found at i:93422001 original size:39 final size:40
Alignment explanation
Indices: 93421889--93422057 Score: 238
Period size: 39 Copynumber: 4.3 Consensus size: 40
93421879 TACTCGTTCA
* *
93421889 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA-C
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACC
* *
93421928 AGATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
1 A-ATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACC
93421969 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACC
* *
93422008 AATGCCTTCGGG-TTTAGCCCGGAATTAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACC
93422047 AATGCCTTCGG
1 AATGCCTTCGG
93422058 ATCTTAGTCC
Statistics
Matches: 121, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
39 74 0.61
40 43 0.36
41 4 0.03
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACC
Found at i:93422064 original size:79 final size:79
Alignment explanation
Indices: 93421887--93422073 Score: 236
Period size: 79 Copynumber: 2.4 Consensus size: 79
93421877 GCTACTCGTT
* *
93421887 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAGATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAGATGCCTTCGGGACTTAACCCGG
*
93421952 ATTTAGTAACTCGCA
65 AATTAGTAACTCGCA
* * * *
93421967 CCAATGCCTTCGGGCTTAGCCCGGA-ATTAGTAACTCGCACCA-ATGCCTTCGGG-TTTAGCCCG
1 CAAATGCCTTCGGACTTAGCCCGGATA-TAGTAACTCGCA-CAGATGCCTTCGGGACTTAACCCG
93422029 GAATTAGTAACTCGCA
64 GAATTAGTAACTCGCA
* *
93422045 CAAATGCCTTCGGATCTTAGTCCGTATAT
1 CAAATGCCTTCGGA-CTTAGCCCGGATAT
93422074 GGTCACTTAG
Statistics
Matches: 92, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
78 35 0.38
79 44 0.48
80 13 0.14
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGACTTAGCCCGGATATAGTAACTCGCACAGATGCCTTCGGGACTTAACCCGGA
ATTAGTAACTCGCA
Found at i:93427423 original size:119 final size:119
Alignment explanation
Indices: 93427240--93427804 Score: 896
Period size: 119 Copynumber: 4.7 Consensus size: 119
93427230 ACATTTATGT
* *
93427240 TGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGAAACATATCGAGGACATAGCAGA
1 TGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGA
* * * *
93427305 TTTGACTTTCAAACATTCTCAAAGATAGCAGATCTAACCTTCAGATGATTATAC
66 TTTGACTCTCAGACGTTCTCAAAGATAGCAGATCTAACCTTCAAATGATTATAC
* * *
93427359 TGAAGCAGATCCAAGATGATTTGGTATTCTTGTATTTATAAGAAACAAATCGAGGACATAGCAGA
1 TGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGA
93427424 TTTGACTCTCAGACGTTCTCAAAGATAGCAGATCTAACCTTCAAATGATTATAC
66 TTTGACTCTCAGACGTTCTCAAAGATAGCAGATCTAACCTTCAAATGATTATAC
* *
93427478 TGAAGTATATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGA
1 TGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGA
* * * *
93427543 TTTGACTCTCCGACGTTCTCAAAAAATAGCAGATCTAACCTTCAGATGTTTATAC
66 TTTGACTCTCAGACGTTCTC-AAAGATAGCAGATCTAACCTTCAAATGATTATAC
*
93427598 TGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAGCAAATCGAGGACATAGCAGA
1 TGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGA
* * * *
93427663 TTTGATTCTCAGACGTTCTCAAATATAGCAGATCTAACCTTCAAATGTTTATAT
66 TTTGACTCTCAGACGTTCTCAAAGATAGCAGATCTAACCTTCAAATGATTATAC
* * * *
93427717 TGAAGCAGATCCAAGATGACTTGATATTCTTGTATTTACAAGGAACAAATCAAGGACATAGCAGA
1 TGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGA
*
93427782 TTTGACTCTCAGATGTTCTCAAA
66 TTTGACTCTCAGACGTTCTCAAA
93427805 CAGACTCAAG
Statistics
Matches: 414, Mismatches: 31, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
119 303 0.73
120 111 0.27
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (119 bp):
TGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGA
TTTGACTCTCAGACGTTCTCAAAGATAGCAGATCTAACCTTCAAATGATTATAC
Found at i:93427653 original size:239 final size:239
Alignment explanation
Indices: 93427240--93427804 Score: 916
Period size: 239 Copynumber: 2.4 Consensus size: 239
93427230 ACATTTATGT
* *
93427240 TGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGAAACATATCGAGGACATAGCAGA
1 TGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGA
* * * *
93427305 TTTGACTTTCAAACATTCTC-AAAGATAGCAGATCTAACCTTCAGATGATTATACTGAAGCAGAT
66 TTTGACTCTCAGACGTTCTCAAAAAATAGCAGATCTAACCTTCAGATGATTATACTGAAGCAGAT
*
93427369 CCAAGATGATTTGGTATTCTTGTATTTATAAGAAACAAATCGAGGACATAGCAGATTTGACTCTC
131 CCAAGATGATTTGGTATTCTTGTATTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTC
93427434 AGACGTTCTCAAAGATAGCAGATCTAACCTTCAAATGATTATAC
196 AGACGTTCTCAAAGATAGCAGATCTAACCTTCAAATGATTATAC
* *
93427478 TGAAGTATATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGA
1 TGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGA
* *
93427543 TTTGACTCTCCGACGTTCTCAAAAAATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGAT
66 TTTGACTCTCAGACGTTCTCAAAAAATAGCAGATCTAACCTTCAGATGATTATACTGAAGCAGAT
* * * *
93427608 CCAAGATGATTTGGTATTCTTGTGTTTACAAGGAGCAAATCGAGGACATAGCAGATTTGATTCTC
131 CCAAGATGATTTGGTATTCTTGTATTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTC
* * *
93427673 AGACGTTCTCAAATATAGCAGATCTAACCTTCAAATGTTTATAT
196 AGACGTTCTCAAAGATAGCAGATCTAACCTTCAAATGATTATAC
* * * *
93427717 TGAAGCAGATCCAAGATGACTTGATATTCTTGTATTTACAAGGAACAAATCAAGGACATAGCAGA
1 TGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGA
*
93427782 TTTGACTCTCAGATGTTCTCAAA
66 TTTGACTCTCAGACGTTCTCAAA
93427805 CAGACTCAAG
Statistics
Matches: 300, Mismatches: 26, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
238 77 0.26
239 223 0.74
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (239 bp):
TGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGA
TTTGACTCTCAGACGTTCTCAAAAAATAGCAGATCTAACCTTCAGATGATTATACTGAAGCAGAT
CCAAGATGATTTGGTATTCTTGTATTTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTC
AGACGTTCTCAAAGATAGCAGATCTAACCTTCAAATGATTATAC
Found at i:93427843 original size:83 final size:83
Alignment explanation
Indices: 93427752--93427997 Score: 348
Period size: 84 Copynumber: 3.0 Consensus size: 83
93427742 ATTCTTGTAT
* * * *
93427752 TTACAAGGAACAAATCAAGGACATAGCAGATTTGACTCTCAGATGTTCTCAAACAGACTCAAGAT
1 TTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAACAGACTCAAGAT
93427817 GGTTTGGCATCCTTGTGC
66 GGTTTGGCATCCTTGTGC
* * *
93427835 TTATAAGGAACAAATCGAGAACATTGCAGATATAACTCTCAAATGTTCTCAAACAGACTCAAGAT
1 TTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAACAGACTCAAGAT
* *
93427900 GGTTTAAGCACCCTTGTGC
66 GGTTT-GGCATCCTTGTGC
* * * *
93427919 TTACAAGGAACAAGTCGAGGACCTTGCAGATATGACTCTCAAATGTTTTCAGACAGACTCAAGAT
1 TTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAACAGACTCAAGAT
* *
93427984 GATTTGACATCCTT
66 GGTTTGGCATCCTT
93427998 ACAAATTGAA
Statistics
Matches: 142, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
83 69 0.49
84 73 0.51
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.27
Consensus pattern (83 bp):
TTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAACAGACTCAAGAT
GGTTTGGCATCCTTGTGC
Found at i:93429527 original size:16 final size:16
Alignment explanation
Indices: 93429506--93429567 Score: 52
Period size: 16 Copynumber: 3.6 Consensus size: 16
93429496 TTATTAAAAG
93429506 TATTATTTTAATTATA
1 TATTATTTTAATTATA
*
93429522 TATTATTATTACTTATTATG
1 TATTATT-TTA---ATTATA
** *
93429542 TATTATTTTTCTTAAA
1 TATTATTTTAATTATA
93429558 TATTATTTTA
1 TATTATTTTA
93429568 CATCTCTTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
16 19 0.53
17 3 0.08
19 2 0.06
20 12 0.33
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (16 bp):
TATTATTTTAATTATA
Found at i:93430006 original size:7 final size:7
Alignment explanation
Indices: 93429994--93430018 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
93429984 ACTATGTTAT
93429994 TATATTA
1 TATATTA
93430001 TATATTA
1 TATATTA
93430008 TATATTA
1 TATATTA
93430015 TATA
1 TATA
93430019 CTATTTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
TATATTA
Found at i:93431346 original size:16 final size:16
Alignment explanation
Indices: 93431325--93431358 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
93431315 AAAGTTTTAG
93431325 TAAATGACCATATGAA
1 TAAATGACCATATGAA
93431341 TAAATGACCATATGAA
1 TAAATGACCATATGAA
93431357 TA
1 TA
93431359 GTAACTTAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.12, T:0.26
Consensus pattern (16 bp):
TAAATGACCATATGAA
Found at i:93434979 original size:29 final size:29
Alignment explanation
Indices: 93434913--93435008 Score: 149
Period size: 29 Copynumber: 3.3 Consensus size: 29
93434903 AAGTCTACAT
* *
93434913 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
93434941 TCTTTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
93434970 ACATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
93434999 ACATTCATAT
1 ACATTCATAT
93435009 ACATGCTTTC
Statistics
Matches: 61, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
28 20 0.33
29 41 0.67
ACGTcount: A:0.29, C:0.31, G:0.14, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:93436855 original size:22 final size:20
Alignment explanation
Indices: 93436821--93436862 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
93436811 CCATTGTTGA
*
93436821 GAAATTGATGAATTAGGCTT
1 GAAATTGATGAATTAAGCTT
93436841 GAAATTGATAAGAATTAAGCTT
1 GAAATTGAT--GAATTAAGCTT
93436863 AGATTATGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 9 0.47
22 10 0.53
ACGTcount: A:0.40, C:0.05, G:0.21, T:0.33
Consensus pattern (20 bp):
GAAATTGATGAATTAAGCTT
Found at i:93437578 original size:21 final size:21
Alignment explanation
Indices: 93437554--93437624 Score: 56
Period size: 21 Copynumber: 3.2 Consensus size: 21
93437544 ATTTCACGTC
93437554 AATTAATCATTATAATACTCA
1 AATTAATCATTATAATACTCA
* * *
93437575 AATT-AT-ATGAAAACACTTGCAA
1 AATTAATCATTATAATAC-T-C-A
93437597 TCAATTAATCATTATAATACTCA
1 --AATTAATCATTATAATACTCA
93437620 AATTA
1 AATTA
93437625 TATGAAAACA
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
19 7 0.19
20 3 0.08
21 10 0.27
22 1 0.03
23 1 0.03
24 5 0.14
25 3 0.08
26 7 0.19
ACGTcount: A:0.48, C:0.14, G:0.03, T:0.35
Consensus pattern (21 bp):
AATTAATCATTATAATACTCA
Found at i:93437616 original size:45 final size:45
Alignment explanation
Indices: 93437552--93437642 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
93437542 CGATTTCACG
93437552 TCAATTAATCATTATAATACTCAAATTATATGAAAACACTTGCAA
1 TCAATTAATCATTATAATACTCAAATTATATGAAAACACTTGCAA
93437597 TCAATTAATCATTATAATACTCAAATTATATGAAAACACTTGCAA
1 TCAATTAATCATTATAATACTCAAATTATATGAAAACACTTGCAA
93437642 T
1 T
93437643 AACTTATGTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.46, C:0.15, G:0.04, T:0.34
Consensus pattern (45 bp):
TCAATTAATCATTATAATACTCAAATTATATGAAAACACTTGCAA
Found at i:93438253 original size:29 final size:29
Alignment explanation
Indices: 93438220--93438276 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
93438210 ATATAGTAAT
*
93438220 GCACCAAAGTGCA-ATAATAGAACAGGATA
1 GCACCAAAGTACATAT-ATAGAACAGGATA
* *
93438249 GCACCGAAGTACATATTTAGAACAGGAT
1 GCACCAAAGTACATATATAGAACAGGAT
93438277 GACATTGAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 22 0.92
30 2 0.08
ACGTcount: A:0.44, C:0.18, G:0.21, T:0.18
Consensus pattern (29 bp):
GCACCAAAGTACATATATAGAACAGGATA
Found at i:93440066 original size:46 final size:45
Alignment explanation
Indices: 93440010--93440179 Score: 178
Period size: 46 Copynumber: 3.6 Consensus size: 45
93440000 TGATATGTGT
*
93440010 GCTAGTGTAAGACATGTCTGGGACATGCATCGACATTAAGATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATC-ACATCAAGATGAGA
* * *
93440056 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCA-CATCAAGAT-GA-GA
* *
93440104 GCTAGTGTAAGACCTGTCTGGGACATGGCATCAACACCGATAGATGAGA
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATC-ACATC-A-AGATGAGA
* * * *
93440153 GCCAGTGTAAGACCTATCTAGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
93440180 ATATCGGCCT
Statistics
Matches: 105, Mismatches: 12, Indels: 12
0.81 0.09 0.09
Matches are distributed among these distances:
45 1 0.01
46 38 0.36
47 1 0.01
48 27 0.26
49 31 0.30
50 3 0.03
51 4 0.04
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.22
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCACATCAAGATGAGA
Found at i:93440163 original size:49 final size:48
Alignment explanation
Indices: 93440013--93440233 Score: 173
Period size: 49 Copynumber: 4.6 Consensus size: 48
93440003 TATGTGTGCT
* * * * *
93440013 AGTGTAAGACATGTCTGGGACAT-GCATCGACAT-TAAGATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGGCATCAACCTCGAAGATGAAAGCC
* * *
93440059 AGTGTAAGACATGTCTGGGACAT-GCATCAGCCTC-AAGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGGCATCAACCTCGAAGAT-GA-AAGCC
* *
93440107 AGTGTAAGACCTGTCTGGGACATGGCATCAACAC-CGATAGATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCAAC-CTCGA-AGATGAAAGCC
* * * ** ** * **
93440156 AGTGTAAGACCTATCTAGGACATGATATCGGCCTCGATATATGAAAATC
1 AGTGTAAGACATGTCTGGGACATGGCATCAACCTCGA-AGATGAAAGCC
*
93440205 AGTGTAAGACTTGTCTGGGACATGGCATC
1 AGTGTAAGACATGTCTGGGACATGGCATC
93440234 GGCATCTTAT
Statistics
Matches: 142, Mismatches: 25, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
46 35 0.25
47 1 0.01
48 27 0.19
49 72 0.51
50 3 0.02
51 4 0.03
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATGGCATCAACCTCGAAGATGAAAGCC
Found at i:93440227 original size:98 final size:95
Alignment explanation
Indices: 93440010--93440233 Score: 263
Period size: 98 Copynumber: 2.3 Consensus size: 95
93440000 TGATATGTGT
* ** * *
93440010 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGACATTAAGATGAGAGCTAGTGTAAGACATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCAACACGAAGATGAGAGCCAGTGTAAGACATATC
* *
93440074 TGGGACATGCATCAGCCTCAAGATATACAA
66 TAGGACATGCATCAGCCTCAAGATATAAAA
* *
93440104 GCTAGTGTAAGACCTGTCTGGGACATGGCATCAACACCGATAGATGAGAGCCAGTGTAAGACCTA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCAACA-CGA-AGATGAGAGCCAGTGTAAGACATA
* * * *
93440169 TCTAGGACATGATATCGGCCTCGATATATGAAAA
64 TCTAGGACATG-CATCAGCCTCAAGATAT-AAAA
* *
93440203 TC-AGTGTAAGACTTGTCTGGGACATGGCATC
1 GCTAGTGTAAGACATGTCTGGGACATGGCATC
93440234 GGCATCTTAT
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
94 25 0.23
95 8 0.07
96 1 0.01
97 31 0.28
98 41 0.37
99 4 0.04
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (95 bp):
GCTAGTGTAAGACATGTCTGGGACATGGCATCAACACGAAGATGAGAGCCAGTGTAAGACATATC
TAGGACATGCATCAGCCTCAAGATATAAAA
Found at i:93444634 original size:31 final size:32
Alignment explanation
Indices: 93444599--93444660 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
93444589 TTTAACGGTT
* *
93444599 ACTGGGCTGAAGCTTTTTC-ATAAATCATATC
1 ACTGGGCTGAAGCCTTTACTATAAATCATATC
*
93444630 ACTGGGCTGAAGCCTTTACTATAAATGATAT
1 ACTGGGCTGAAGCCTTTACTATAAATCATAT
93444661 GGCCCATAGG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 17 0.63
32 10 0.37
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.34
Consensus pattern (32 bp):
ACTGGGCTGAAGCCTTTACTATAAATCATATC
Found at i:93444965 original size:16 final size:16
Alignment explanation
Indices: 93444944--93444974 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
93444934 AACCCAACCC
*
93444944 ATGCAGCATGTCATGT
1 ATGCAGAATGTCATGT
93444960 ATGCAGAATGTCATG
1 ATGCAGAATGTCATG
93444975 CCCATATTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (16 bp):
ATGCAGAATGTCATGT
Found at i:93445175 original size:27 final size:27
Alignment explanation
Indices: 93445142--93445332 Score: 247
Period size: 27 Copynumber: 7.1 Consensus size: 27
93445132 GGTATCTCTG
93445142 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
* * *
93445169 TATTTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGA
* *
93445196 TAATTCTGCCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCGA
** *
93445223 TAATTCTACCCTTTAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGA
* *
93445250 TAATTCTACCCTACAGGGTTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCGA
* * * *
93445277 TAATTCTAACTTATAGGGGTATTTTGA
1 TAATTCTACCCTACAGGGGTATTTCGA
*
93445304 TAATTCTACCCTACAGGGGTATTTTGA
1 TAATTCTACCCTACAGGGGTATTTCGA
93445331 TA
1 TA
93445333 TTTTACAAAT
Statistics
Matches: 137, Mismatches: 27, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 137 1.00
ACGTcount: A:0.26, C:0.19, G:0.18, T:0.38
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGA
Found at i:93445378 original size:27 final size:26
Alignment explanation
Indices: 93445289--93445472 Score: 131
Period size: 27 Copynumber: 6.9 Consensus size: 26
93445279 ATTCTAACTT
* **
93445289 ATAGGGGTATTTTGATAATTCTACCCT
1 ATAGGGGTATTTTGATAATTTTA-CAA
*
93445316 ACAGGGGTATTTTGAT-ATTTTACAA
1 ATAGGGGTATTTTGATAATTTTACAA
* * * *
93445341 ATCGAGAGTATTTCGATAATTTCACAA
1 ATAG-GGGTATTTTGATAATTTTACAA
*
93445368 ATTAGGGGTATTTTGGTAATTTTACAA
1 A-TAGGGGTATTTTGATAATTTTACAA
** *
93445395 GCCAGGGGTATTTTGGTAATTTTACAA
1 -ATAGGGGTATTTTGATAATTTTACAA
* *
93445422 ACCT-GGAGAATTTT-AGTAATTTTACAA
1 A--TAGGGGTATTTTGA-TAATTTTACAA
* *
93445449 ACCAGGGGTATTTTGGTAATTTTA
1 A-TAGGGGTATTTTGATAATTTTA
93445473 TTGATCGAGG
Statistics
Matches: 123, Mismatches: 25, Indels: 18
0.74 0.15 0.11
Matches are distributed among these distances:
25 3 0.02
26 16 0.13
27 102 0.83
28 2 0.02
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.39
Consensus pattern (26 bp):
ATAGGGGTATTTTGATAATTTTACAA
Found at i:93445510 original size:27 final size:27
Alignment explanation
Indices: 93445320--93445525 Score: 164
Period size: 27 Copynumber: 7.7 Consensus size: 27
93445310 TACCCTACAG
* * *
93445320 GGGTATTTTGAT-ATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
* * * * ** *
93445346 GAGTATTTCGATAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
93445373 GGGTATTTTGGTAATTTTACAAGCCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
*
93445400 GGGTATTTTGGTAATTTTACAAACC-T
1 GGGTATTTTGGTAATTTTACAAACCAA
* * *
93445426 GGAGAATTTTAGTAATTTTACAAACCAG
1 GG-GTATTTTGGTAATTTTACAAACCAA
*** * *
93445454 GGGTATTTTGGTAATTTTATTGATCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
**
93445481 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
**
93445508 GGGTATTTCAGTAATTTT
1 GGGTATTTTGGTAATTTT
93445526 GTAAATTGAG
Statistics
Matches: 144, Mismatches: 33, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
26 12 0.08
27 130 0.90
28 2 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:93445521 original size:81 final size:81
Alignment explanation
Indices: 93445317--93445525 Score: 221
Period size: 81 Copynumber: 2.6 Consensus size: 81
93445307 TTCTACCCTA
* * * **
93445317 CAGGGGTATTTTGAT-ATTTTACAAATC-GAGAGTATTTC-GATAATTTCACAAATTAGGGGTAT
1 CAGGGGTATTTTGGTAATTTTACAAACCAG-GAGTATTTCAG-TAATTTTACAAACCAGGGGTAT
93445379 TTTGGTAATTTTACAAGC
64 TTTGGTAATTTTACAAGC
* * *
93445397 CAGGGGTATTTTGGTAATTTTACAAACCTGGAGAATTTTAGTAATTTTACAAACCAGGGGTATTT
1 CAGGGGTATTTTGGTAATTTTACAAACCAGGAGTATTTCAGTAATTTTACAAACCAGGGGTATTT
** *
93445462 TGGTAATTTTATTGATC
66 TGGTAATTTTA-CAAGC
* **
93445479 GA-GGGTATTTTGGTAATTTTGTAAACCAAGG-GTATTTCAGTAATTTT
1 CAGGGGTATTTTGGTAATTTTACAAACC-AGGAGTATTTCAGTAATTTT
93445526 GTAAATTGAG
Statistics
Matches: 108, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
80 14 0.13
81 87 0.81
82 7 0.06
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (81 bp):
CAGGGGTATTTTGGTAATTTTACAAACCAGGAGTATTTCAGTAATTTTACAAACCAGGGGTATTT
TGGTAATTTTACAAGC
Found at i:93445537 original size:27 final size:27
Alignment explanation
Indices: 93445478--93445539 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
93445468 TTTTATTGAT
**
93445478 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CGAGGGTATTTCAGTAATTTTGTAAAC
* *
93445505 CAAGGGTATTTCAGTAATTTTGTAAAT
1 CGAGGGTATTTCAGTAATTTTGTAAAC
*
93445532 TGAGGGTA
1 CGAGGGTA
93445540 AAAGGGTAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.29, C:0.06, G:0.26, T:0.39
Consensus pattern (27 bp):
CGAGGGTATTTCAGTAATTTTGTAAAC
Found at i:93445537 original size:54 final size:54
Alignment explanation
Indices: 93445320--93445539 Score: 187
Period size: 54 Copynumber: 4.1 Consensus size: 54
93445310 TACCCTACAG
* * * * * * *
93445320 GGGTATTTTGAT-ATTTTACAAATC-GAGAGTATTTCGATAATTTCACAAATT-A
1 GGGTATTTTGGTAATTTTACAAACCAG-GGGTATTTTGGTAATTTTATAAATTGA
* * *
93445372 GGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTACAAACCTG-
1 -GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAA-TTGA
* * * ** *
93445427 GAGAATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATTGATCGA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAATTGA
** * ** *
93445481 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTGTAAATTGA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAATTGA
93445535 GGGTA
1 GGGTA
93445540 AAAGGGTAAT
Statistics
Matches: 133, Mismatches: 29, Indels: 9
0.78 0.17 0.05
Matches are distributed among these distances:
53 12 0.09
54 119 0.89
55 2 0.02
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAATTGA
Found at i:93445548 original size:27 final size:27
Alignment explanation
Indices: 93445518--93445836 Score: 449
Period size: 27 Copynumber: 11.8 Consensus size: 27
93445508 GGGTATTTCA
* * * *
93445518 GTAATTTTGTAAATTGAGGGTAAAAGG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
93445545 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
93445572 ATAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
93445599 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
93445626 ATAATTTTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
93445653 ATAATTCTATAAATCGAGGGTGAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
93445680 GTAATTCTATAAATCGAGAGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* *
93445707 GTAATTCTATAAATCGAGGGTGAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
93445734 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
93445761 GTAATTCTATAAATCGCGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
93445788 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
93445815 GTAATTTTGTAAATCAAGGGTA
1 GTAATTCTATAAATCGAGGGTA
93445837 TTTTGGTAAT
Statistics
Matches: 264, Mismatches: 28, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 264 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:93445861 original size:27 final size:27
Alignment explanation
Indices: 93445813--93445875 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 27
93445803 GAGGGTAAAA
** *
93445813 TGGTAATTTTGTAAATCAAGGGTATTT
1 TGGTAATTTTACAAATCAAGGGCATTT
**
93445840 TGGTAATTTTACAAATTGAGGGCATTT
1 TGGTAATTTTACAAATCAAGGGCATTT
**
93445867 CAGTAATTT
1 TGGTAATTT
93445876 GGTAAATTAA
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.30, C:0.06, G:0.21, T:0.43
Consensus pattern (27 bp):
TGGTAATTTTACAAATCAAGGGCATTT
Found at i:93448248 original size:25 final size:25
Alignment explanation
Indices: 93448214--93448283 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
93448204 CTCTTTTAAT
*
93448214 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
93448239 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
93448264 AACTGCGGCAAAGCTCTTTT
1 AACTGGGGCAAAGCCCTTTT
93448284 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:93448547 original size:27 final size:27
Alignment explanation
Indices: 93448503--93448704 Score: 248
Period size: 27 Copynumber: 7.5 Consensus size: 27
93448493 TTTTACCTAA
* *
93448503 GGGTATCTCGGTAATTCTACCCTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
* *
93448530 GGGTATTTCGATATTTCTACCCTACAA
1 GGGTATTTCGATAATTCTACCCTACAG
* * *
93448557 GGGTATTTCGGTAATTCTGCCCTATAG
1 GGGTATTTCGATAATTCTACCCTACAG
*
93448584 GGGTATTTC-AGTAATTCTACCCTATAG
1 GGGTATTTCGA-TAATTCTACCCTACAG
*
93448611 GGGTATTTCGATAATTTTACCCTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
*
93448638 GGTTATTTC-AGTAATTCTACCCTACAG
1 GGGTATTTCGA-TAATTCTACCCTACAG
*
93448665 GGGTATTT-TAGTAATTCTACCCTACAG
1 GGGTATTTCGA-TAATTCTACCCTACAG
*
93448692 GGGTATTTTGATA
1 GGGTATTTCGATA
93448705 TTTTACAAAT
Statistics
Matches: 153, Mismatches: 17, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
26 1 0.01
27 150 0.98
28 2 0.01
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.37
Consensus pattern (27 bp):
GGGTATTTCGATAATTCTACCCTACAG
Found at i:93448560 original size:54 final size:54
Alignment explanation
Indices: 93448501--93448699 Score: 274
Period size: 54 Copynumber: 3.7 Consensus size: 54
93448491 AATTTTACCT
* *
93448501 AAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTC-GATATTTCTACCCTAC
1 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAG-TAATTCTACCCTAC
* * *
93448555 AAGGGTATTTCGGTAATTCTGCCCTATAGGGGTATTTCAGTAATTCTACCCTAT
1 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTAC
* * * *
93448609 AGGGGTATTTCGATAATTTTACCCTACAGGGTTATTTCAGTAATTCTACCCTAC
1 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTAC
* **
93448663 AGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTT
1 AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
93448700 TGATATTTTA
Statistics
Matches: 127, Mismatches: 17, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
54 126 0.99
55 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.36
Consensus pattern (54 bp):
AAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTAC
Found at i:93448603 original size:81 final size:80
Alignment explanation
Indices: 93448503--93448710 Score: 310
Period size: 81 Copynumber: 2.6 Consensus size: 80
93448493 TTTTACCTAA
* * *
93448503 GGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCGATATTTCTACCCTACAAGGG-TATTTCG
1 GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTT-TACCCTAC-AGGGTTATTTCA
* *
93448567 GTAATTCTGCCCTATAG
64 GTAATTCTACCCTACAG
*
93448584 GGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCGATAATTTTACCCTACAGGGTTATTTCAG
1 GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGAT-ATTTTACCCTACAGGGTTATTTCAG
93448649 TAATTCTACCCTACAG
65 TAATTCTACCCTACAG
* *
93448665 GGGTATTTTAGTAATTCTACCCTACAGGGGTATTTTGATATTTTAC
1 GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTTTAC
93448711 AAATCGAGAG
Statistics
Matches: 116, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
80 11 0.09
81 101 0.87
82 4 0.03
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (80 bp):
GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATATTTTACCCTACAGGGTTATTTCAGT
AATTCTACCCTACAG
Found at i:93448750 original size:27 final size:27
Alignment explanation
Indices: 93448689--93448897 Score: 210
Period size: 27 Copynumber: 7.8 Consensus size: 27
93448679 TTCTACCCTA
*
93448689 CAGGGGTATTTTGAT-ATTTTACAAAT
1 CAGGGGTATTTTGATAATTTTACAAAC
* * * *
93448715 C-GAGAGTATTTCGATAATTTCACAAAT
1 CAG-GGGTATTTTGATAATTTTACAAAC
* *
93448742 CAGGGGTATTTTGGTAATTTTACAAGC
1 CAGGGGTATTTTGATAATTTTACAAAC
*
93448769 CAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGATAATTTTACAAAC
93448796 CAGGGGTATTTT-AGTAATTTTACAAAC
1 CAGGGGTATTTTGA-TAATTTTACAAAC
* ** *
93448823 CAGGGGTATTTTGGTAATTTTACTGAT
1 CAGGGGTATTTTGATAATTTTACAAAC
* **
93448850 C-GAGGGTATTTTGGTAATTTTGTAAAC
1 CAG-GGGTATTTTGATAATTTTACAAAC
* *
93448877 CAAGGGTATTTTAATAATTTT
1 CAGGGGTATTTTGATAATTTT
93448898 GTAAATCAAG
Statistics
Matches: 153, Mismatches: 23, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
25 1 0.01
26 12 0.08
27 139 0.91
28 1 0.01
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.40
Consensus pattern (27 bp):
CAGGGGTATTTTGATAATTTTACAAAC
Found at i:93448787 original size:54 final size:54
Alignment explanation
Indices: 93448662--93448911 Score: 238
Period size: 54 Copynumber: 4.6 Consensus size: 54
93448652 TTCTACCCTA
* * ** * *
93448662 CAGGGGTATTTTAGTAATTCTAC-CCTACAGGGGTATTTTGAT-ATTTTACAAAT
1 CAGGGGTATTTTGGTAATTTTACAAAT-CAGGGGTATTTTGGTAATTTTACAAAC
* * * * *
93448715 C-GAGAGTATTTCGATAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAGC
1 CAG-GGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAAC
* *
93448769 CAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAAC
** **
93448823 CAGGGGTATTTTGGTAATTTTACTGATC-GAGGGTATTTTGGTAATTTTGTAAAC
1 CAGGGGTATTTTGGTAATTTTACAAATCAG-GGGTATTTTGGTAATTTTACAAAC
* ** ** *
93448877 CAAGGGTATTTTAATAATTTTGTAAATCAAGGGTA
1 CAGGGGTATTTTGGTAATTTTACAAATCAGGGGTA
93448912 AAACGGTAAT
Statistics
Matches: 159, Mismatches: 32, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
52 1 0.01
53 30 0.19
54 127 0.80
55 1 0.01
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.38
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAAC
Found at i:93448911 original size:81 final size:81
Alignment explanation
Indices: 93448662--93448911 Score: 261
Period size: 81 Copynumber: 3.1 Consensus size: 81
93448652 TTCTACCCTA
* * **** * * * *
93448662 CAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTTGAT-ATTTTACAAATCGAGAGTATTT
1 CAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
** *
93448726 CGATAATTTCACAAAT
66 TAATAATTTTACAAAT
*
93448742 CAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTT
1 CAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
* *
93448807 TAGTAATTTTACAAAC
66 TAATAATTTTACAAAT
* * * **
93448823 CAGGGGTATTTTGGTAATTTTACTGATCGA-GGGTATTTTGGTAATTTTGTAAACCAAGGGTATT
1 CAGGGGTATTTTGGTAATTTTAC-AAGCCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATT
**
93448887 TTAATAATTTTGTAAAT
65 TTAATAATTTTACAAAT
*
93448904 CAAGGGTA
1 CAGGGGTA
93448912 AAACGGTAAT
Statistics
Matches: 141, Mismatches: 27, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
80 35 0.25
81 103 0.73
82 3 0.02
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.38
Consensus pattern (81 bp):
CAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
TAATAATTTTACAAAT
Found at i:93448921 original size:27 final size:27
Alignment explanation
Indices: 93448891--93449097 Score: 227
Period size: 27 Copynumber: 7.7 Consensus size: 27
93448881 GGTATTTTAA
* * *
93448891 TAATTTTGTAAATCAAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAATGG
* *
93448918 TAATTTTGTAAATCGAAGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAATGG
* *
93448945 TAATTCTATAAATCGAGGGTAAAATGA
1 TAATTCTGTAAATCGAGGGTAAAATGG
* * * *
93448972 TAATTTTGTAAATCGAGGGTGAAACGA
1 TAATTCTGTAAATCGAGGGTAAAATGG
* *
93448999 TAATTCTATAAATCGAGGATAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAATGG
* * * *
93449026 AAATTCTATAAATTGAGGGTAAAATGC
1 TAATTCTGTAAATCGAGGGTAAAATGG
* * *
93449053 TAATTTTGTAAATCGAGTGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAATGG
93449080 TAATTCTGTAAATC-AGGG
1 TAATTCTGTAAATCGAGGG
93449098 ATACTTTGGT
Statistics
Matches: 150, Mismatches: 30, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
26 3 0.02
27 147 0.98
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.31
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAATGG
Found at i:93448933 original size:81 final size:81
Alignment explanation
Indices: 93448848--93449114 Score: 248
Period size: 81 Copynumber: 3.3 Consensus size: 81
93448838 AATTTTACTG
* * ***
93448848 ATCGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAATAATTTTGTAAATCAAGGGTAA
1 ATCGAGGGTAATTTGGTAATTTTATAAACCAAGGGTAAAATAATAATTTTGTAAATCAAGGGTAA
*
93448913 AACGGTAATTTTGTAA
66 AACGGTAATTCTGTAA
* ** * * * * * *
93448929 ATCGAAGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGATAATTTTGTAAATCGAGGGTGA
1 ATCGAGGGTAATTTGGTAATTTTATAAACCAAGGGTAAAATAATAATTTTGTAAATCAAGGGTAA
* *
93448994 AACGATAATTCTATAA
66 AACGGTAATTCTGTAA
* ** * * *** ** * *
93449010 ATCGAGGATAAAATGGAAATTCTATAAATTGAGGGTAAAATGCTAATTTTGTAAATCGAGTGTAA
1 ATCGAGGGTAATTTGGTAATTTTATAAACCAAGGGTAAAATAATAATTTTGTAAATCAAGGGTAA
93449075 AACGGTAATTCTGTAA
66 AACGGTAATTCTGTAA
*
93449091 ATC-AGGGATACTTTGGTAATTTTA
1 ATCGAGGG-TAATTTGGTAATTTTA
93449115 CAAATTGAGG
Statistics
Matches: 153, Mismatches: 32, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
80 3 0.02
81 150 0.98
ACGTcount: A:0.38, C:0.07, G:0.21, T:0.34
Consensus pattern (81 bp):
ATCGAGGGTAATTTGGTAATTTTATAAACCAAGGGTAAAATAATAATTTTGTAAATCAAGGGTAA
AACGGTAATTCTGTAA
Found at i:93449111 original size:54 final size:54
Alignment explanation
Indices: 93448891--93449125 Score: 229
Period size: 54 Copynumber: 4.4 Consensus size: 54
93448881 GGTATTTTAA
* * * *
93448891 TAATTTTGTAAATCAAGGGTAAAACGGTAATTTTGTAAATCGAAGGTAAAATGG
1 TAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGG
* * * * * * *
93448945 TAATTCTATAAATCGAGGGTAAAATGATAATTTTGTAAATCGAGGGTGAAACGA
1 TAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGG
* * * * * * *
93448999 TAATTCTATAAATCGAGGATAAAATGGAAATTCTATAAATTGAGGGTAAAATGC
1 TAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGG
* * ***
93449053 TAATTTTGTAAATCGAGTGTAAAACGGTAATTCTGTAAATC-AGGGATACTTTGG
1 TAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGG-TAAAATGG
* *
93449107 TAATTTTACAAATTGAGGG
1 TAATTTTATAAATCGAGGG
93449126 CATTTTAGTA
Statistics
Matches: 146, Mismatches: 34, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
53 4 0.03
54 142 0.97
ACGTcount: A:0.40, C:0.07, G:0.21, T:0.32
Consensus pattern (54 bp):
TAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGG
Found at i:93449139 original size:81 final size:81
Alignment explanation
Indices: 93448890--93449125 Score: 305
Period size: 81 Copynumber: 2.9 Consensus size: 81
93448880 GGGTATTTTA
* * *
93448890 ATAATTTTGTAAATCAAGGGTAAAACGGTAATTTTGTAAATCGAAGG-TAAAATGGTAATTCTAT
1 ATAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-AGGGATAAAATGGTAATTCTAT
*
93448954 AAATCGAGGGTAAAATG
65 AAATTGAGGGTAAAATG
* * * *
93448971 ATAATTTTGTAAATCGAGGGTGAAACGATAATTCTATAAATC-GAGGATAAAATGGAAATTCTAT
1 ATAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAG-GGATAAAATGGTAATTCTAT
93449035 AAATTGAGGGTAAAATG
65 AAATTGAGGGTAAAATG
* * *** * *
93449052 CTAATTTTGTAAATCGAGTGTAAAACGGTAATTCTGTAAATCAGGGATACTTTGGTAATTTTACA
1 ATAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAGGGATAAAATGGTAATTCTATA
93449117 AATTGAGGG
66 AATTGAGGG
93449126 CATTTTAGTA
Statistics
Matches: 133, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
80 2 0.02
81 130 0.98
82 1 0.01
ACGTcount: A:0.40, C:0.07, G:0.21, T:0.32
Consensus pattern (81 bp):
ATAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAGGGATAAAATGGTAATTCTATA
AATTGAGGGTAAAATG
Found at i:93451526 original size:25 final size:24
Alignment explanation
Indices: 93451493--93451575 Score: 96
Period size: 25 Copynumber: 3.4 Consensus size: 24
93451483 CTAGAGGCCT
*
93451493 AGCCTTTTTTAATAACTGGGGCAA
1 AGCCCTTTTTAATAACTGGGGCAA
*
93451517 AGCCCATTTTGAGA-AACTGGGGCAA
1 AGCCC-TTTTTA-ATAACTGGGGCAA
**
93451542 AGCCCTTTTTGGTAAACTGGGGCAA
1 AGCCCTTTTTAAT-AACTGGGGCAA
93451567 AGCCCTTTT
1 AGCCCTTTT
93451576 AGCACTTCAT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
24 8 0.16
25 41 0.82
26 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTTAATAACTGGGGCAA
Found at i:93451835 original size:27 final size:27
Alignment explanation
Indices: 93451791--93451965 Score: 226
Period size: 27 Copynumber: 6.5 Consensus size: 27
93451781 TTTTACCCAA
* * *
93451791 GGGTATCTCGGTAATTCTACCCTATAG
1 GGGTATTTCGATAATTCTACCCTACAG
* *
93451818 GGGTATTTCGATATTTCTACCCTACAA
1 GGGTATTTCGATAATTCTACCCTACAG
* * *
93451845 GGGAATTTCGGTAATTCTACCCTACAA
1 GGGTATTTCGATAATTCTACCCTACAG
*
93451872 GGGTATTTCAATAATTCTACCCTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
*
93451899 AGGTATTTC-AGTAATTCTACCCTACAG
1 GGGTATTTCGA-TAATTCTACCCTACAG
*
93451926 GGGTTTTTCGATAATTCTACCCTACAG
1 GGGTATTTCGATAATTCTACCCTACAG
*
93451953 GGGTATTTTGATA
1 GGGTATTTCGATA
93451966 TTTTAAAAAT
Statistics
Matches: 129, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
26 1 0.01
27 127 0.98
28 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GGGTATTTCGATAATTCTACCCTACAG
Found at i:93451856 original size:54 final size:54
Alignment explanation
Indices: 93451788--93451960 Score: 249
Period size: 54 Copynumber: 3.2 Consensus size: 54
93451778 TAATTTTACC
* * *
93451788 CAAGGGTATCTCGGTAATTCTACCCTATAGGGGTATTTCGATATTTCTACCCTA
1 CAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTA
* * *
93451842 CAAGGGAATTTCGGTAATTCTACCCTACAAGGGTATTTCAATAATTCTACCCTA
1 CAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTA
* *
93451896 C-AGAGGTATTTCAGTAATTCTACCCTACAGGGGTTTTTCGATAATTCTACCCTA
1 CAAG-GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTA
*
93451950 CAGGGGTATTT
1 CAAGGGTATTT
93451961 TGATATTTTA
Statistics
Matches: 105, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
53 2 0.02
54 102 0.97
55 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (54 bp):
CAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTA
Found at i:93452011 original size:27 final size:27
Alignment explanation
Indices: 93451981--93452136 Score: 161
Period size: 27 Copynumber: 5.8 Consensus size: 27
93451971 AAAATTGACA
* * * *
93451981 GTATTTCGATAATTTCATAAATCAGGG
1 GTATTTTGGTAATTTTATAAACCAGGG
* *
93452008 GTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTATAAACCAGGG
*
93452035 GTATTTTGGTAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTTATAAACCAGGG
* * *
93452062 TTATTTTGGTAATTTTACT-AATCAAGG
1 GTATTTTGGTAATTTTA-TAAACCAGGG
* *
93452089 GTATTTTGGTAATTTTGTAAACCAAGG
1 GTATTTTGGTAATTTTATAAACCAGGG
** *
93452116 GTATTTCAGTAATTTTGTAAA
1 GTATTTTGGTAATTTTATAAA
93452137 TTGAGGGTAA
Statistics
Matches: 111, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
26 1 0.01
27 110 0.99
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
GTATTTTGGTAATTTTATAAACCAGGG
Found at i:93452048 original size:54 final size:54
Alignment explanation
Indices: 93451981--93452131 Score: 178
Period size: 54 Copynumber: 2.8 Consensus size: 54
93451971 AAAATTGACA
* * * * *
93451981 GTATTTCGATAATTTCATAAATCAGGGGTATTTTGGTAATTTTAC-AAGCCAGGG
1 GTATTTTGGTAATTTTATAAACCAGGGGTATTTTGGTAATTTTACTAA-CCAAGG
* * *
93452035 GTATTTTGGTAATTTTACAAACCAGGGTTATTTTGGTAATTTTACTAATCAAGG
1 GTATTTTGGTAATTTTATAAACCAGGGGTATTTTGGTAATTTTACTAACCAAGG
* * **
93452089 GTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTT
1 GTATTTTGGTAATTTTATAAACCAGGGGTATTTTGGTAATTTT
93452132 GTAAATTGAG
Statistics
Matches: 82, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
54 80 0.98
55 2 0.02
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (54 bp):
GTATTTTGGTAATTTTATAAACCAGGGGTATTTTGGTAATTTTACTAACCAAGG
Done.