Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 28 of 349
Found at i:7774539 original size:59 final size:59
Alignment explanation
Indices: 7774447--7774565 Score: 238
Period size: 59 Copynumber: 2.0 Consensus size: 59
7774437 ATGATATTAA
7774447 ACTATACGATATCTAGATTCATTCGATAGATTAAATTGTCCAGGTACGTATAAATTGTT
1 ACTATACGATATCTAGATTCATTCGATAGATTAAATTGTCCAGGTACGTATAAATTGTT
7774506 ACTATACGATATCTAGATTCATTCGATAGATTAAATTGTCCAGGTACGTATAAATTGTT
1 ACTATACGATATCTAGATTCATTCGATAGATTAAATTGTCCAGGTACGTATAAATTGTT
7774565 A
1 A
7774566 TACATATGAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 60 1.00
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.37
Consensus pattern (59 bp):
ACTATACGATATCTAGATTCATTCGATAGATTAAATTGTCCAGGTACGTATAAATTGTT
Found at i:7782580 original size:39 final size:39
Alignment explanation
Indices: 7782528--7782653 Score: 207
Period size: 39 Copynumber: 3.2 Consensus size: 39
7782518 AACTTAATGT
7782528 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
1 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
*
7782567 CTAGAAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
1 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
* * * *
7782606 CTAGCAGGCCTCGTGCCAGTGTTAAGTTCGGGTTTATAC
1 CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
7782645 CTAGCAGGC
1 CTAGCAGGC
7782654 AAATTTCCGG
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 81 1.00
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.28
Consensus pattern (39 bp):
CTAGCAGGCCTCGTGCCGGTGATAAATTCAGGTTTATAC
Found at i:7784736 original size:75 final size:74
Alignment explanation
Indices: 7784647--7784817 Score: 208
Period size: 75 Copynumber: 2.4 Consensus size: 74
7784637 GTTTTCCTCA
* * ** * * *
7784647 TTGAAATATCATACCTATATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTCAACT
1 TTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAACT
7784711 CAGTATGGAT
65 CAGTATGGAT
*
7784721 TTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAACT
1 TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
7784786 CAGTATGGA-
65 CAGTATGGAT
*
7784795 -TG--ATACCACACCTACATTTCACA
1 TTGAAATACCATACCTACATTTCACA
7784818 CTTTGCCATG
Statistics
Matches: 86, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
70 20 0.23
73 2 0.02
74 7 0.08
75 57 0.66
ACGTcount: A:0.33, C:0.24, G:0.11, T:0.32
Consensus pattern (74 bp):
TTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACTC
AGTATGGAT
Found at i:7784753 original size:40 final size:38
Alignment explanation
Indices: 7784651--7784817 Score: 172
Period size: 35 Copynumber: 4.6 Consensus size: 38
7784641 TCCTCATTGA
* * ** *
7784651 AATATCATACCTATATTTTTCAACTCGGTATGG--GA-
1 AATACCATACCTACATTTCACAACTCAGTATGGATGAT
* *
7784686 AATGCCATACCTACATTTCTCAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGA--TGAT
*
7784726 AATACCATACCTACATTTCACAGCTCAGTAT-G--GAT
1 AATACCATACCTACATTTCACAACTCAGTATGGATGAT
7784761 AATACCATACCTACATTTCACAACTCAGTATGGATG--
1 AATACCATACCTACATTTCACAACTCAGTATGGATGAT
*
7784797 -ATACCACACCTACATTTCACA
1 AATACCATACCTACATTTCACA
7784818 CTTTGCCATG
Statistics
Matches: 114, Mismatches: 10, Indels: 16
0.81 0.07 0.11
Matches are distributed among these distances:
35 81 0.71
36 1 0.01
38 1 0.01
39 3 0.03
40 28 0.25
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (38 bp):
AATACCATACCTACATTTCACAACTCAGTATGGATGAT
Found at i:7788840 original size:35 final size:35
Alignment explanation
Indices: 7788698--7788828 Score: 140
Period size: 35 Copynumber: 3.6 Consensus size: 35
7788688 CCTCATTGAA
* *
7788698 ATACCATACCTACATTTTACAACTC-GATATGGGA-A
1 ATACCATACCTACATTTCACAACTCAG-TAT-GGATG
* **
7788733 ATGCCATACCTACATTTCTTAACTCAGTATGGATTTG
1 ATACCATACCTACATTTCACAACTCAGTATGGA--TG
7788770 ATAATACCATACCTACATTTCACAACTCAGTATGGATG
1 ---ATACCATACCTACATTTCACAACTCAGTATGGATG
7788808 ATACCATACCTACATTTCACA
1 ATACCATACCTACATTTCACA
7788829 CTTTTTTATG
Statistics
Matches: 81, Mismatches: 8, Indels: 14
0.79 0.08 0.14
Matches are distributed among these distances:
34 3 0.04
35 45 0.56
36 1 0.01
38 2 0.02
40 30 0.37
ACGTcount: A:0.34, C:0.24, G:0.10, T:0.31
Consensus pattern (35 bp):
ATACCATACCTACATTTCACAACTCAGTATGGATG
Found at i:7801711 original size:74 final size:74
Alignment explanation
Indices: 7801590--7801737 Score: 278
Period size: 74 Copynumber: 2.0 Consensus size: 74
7801580 AATTATCAAC
* *
7801590 ATAAATAAGATAAATTTTGTCCAAATTTTAGCTATACCTCAAATTGCAACTATCGTTGTAGCTAG
1 ATAAATAACATAAATTTTGTCCAAATTTTAGCTATAACTCAAATTGCAACTATCGTTGTAGCTAG
7801655 AAATCAAAT
66 AAATCAAAT
7801664 ATAAATAACATAAATTTTGTCCAAATTTTAGCTATAACTCAAATTGCAACTATCGTTGTAGCTAG
1 ATAAATAACATAAATTTTGTCCAAATTTTAGCTATAACTCAAATTGCAACTATCGTTGTAGCTAG
7801729 AAATCAAAT
66 AAATCAAAT
7801738 TTTGGTTCTA
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
74 72 1.00
ACGTcount: A:0.41, C:0.15, G:0.10, T:0.34
Consensus pattern (74 bp):
ATAAATAACATAAATTTTGTCCAAATTTTAGCTATAACTCAAATTGCAACTATCGTTGTAGCTAG
AAATCAAAT
Found at i:7807567 original size:20 final size:20
Alignment explanation
Indices: 7807542--7807590 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
7807532 AGGGGCACAT
* *
7807542 GCCCGTGTGGCTTGGGACAC
1 GCCCGTGTGGCCTGGAACAC
*
7807562 GCCCGTGTGGCCTGGAACAT
1 GCCCGTGTGGCCTGGAACAC
7807582 GCCCGTGTG
1 GCCCGTGTG
7807591 CTGCAACTGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.10, C:0.31, G:0.39, T:0.20
Consensus pattern (20 bp):
GCCCGTGTGGCCTGGAACAC
Found at i:7808486 original size:53 final size:52
Alignment explanation
Indices: 7808405--7808564 Score: 169
Period size: 52 Copynumber: 3.1 Consensus size: 52
7808395 CGGATCACAT
* * ** * * **
7808405 ATCATACCGATGCCATATCTCATATATGGTCTTATACAGAATTACGTTATCAC
1 ATCATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCAC-AAATCAC
*
7808458 ATCACACCGATGCCATAGCCCAGCTATGGTCTTATACGGGAA-CACAAATCAC
1 ATCATACCGATGCCATAGCCCAGCTATGGTCTTATAC-GGAATCACAAATCAC
* * * * *
7808510 ATTATACCGGTGCCATAGCCCGGCTATGGTCTTATACGGAATCATATATCAC
1 ATCATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACAAATCAC
7808562 ATC
1 ATC
7808565 TTTTCCGTCA
Statistics
Matches: 89, Mismatches: 16, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
51 4 0.04
52 48 0.54
53 34 0.38
54 3 0.03
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.28
Consensus pattern (52 bp):
ATCATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACAAATCAC
Found at i:7808561 original size:52 final size:52
Alignment explanation
Indices: 7808361--7808564 Score: 163
Period size: 52 Copynumber: 4.0 Consensus size: 52
7808351 TCACACATCA
* ** * * *
7808361 CACACCGAAGCCATAGCCTTGCCATGGTCTTACACGG-ATCACATAT--CAT
1 CACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCATATATCACAT
* * ** * *
7808410 ---ACCGATGCCATATCTCATATATGGTCTTATACAGAATTACGT-TATCACAT
1 CACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAA-T-CATATATCACAT
* *
7808460 CACACCGATGCCATAGCCCAGCTATGGTCTTATACGGGAA-CACAAATCACAT
1 CACACCGATGCCATAGCCCAGCTATGGTCTTATAC-GGAATCATATATCACAT
* * * *
7808512 TATACCGGTGCCATAGCCCGGCTATGGTCTTATACGGAATCATATATCACAT
1 CACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCATATATCACAT
7808564 C
1 C
7808565 TTTTCCGTCA
Statistics
Matches: 117, Mismatches: 27, Indels: 19
0.72 0.17 0.12
Matches are distributed among these distances:
46 24 0.21
47 1 0.01
48 4 0.03
49 1 0.01
50 3 0.03
51 5 0.04
52 48 0.41
53 28 0.24
54 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (52 bp):
CACACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCATATATCACAT
Found at i:7816427 original size:17 final size:17
Alignment explanation
Indices: 7816401--7816433 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7816391 CTTTGTTTGA
*
7816401 AAACCTAAAGAAGAATC
1 AAACCAAAAGAAGAATC
7816418 AAACCAAAAGAAGAAT
1 AAACCAAAAGAAGAAT
7816434 ATACAATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.64, C:0.15, G:0.12, T:0.09
Consensus pattern (17 bp):
AAACCAAAAGAAGAATC
Found at i:7821346 original size:32 final size:32
Alignment explanation
Indices: 7821299--7821366 Score: 93
Period size: 32 Copynumber: 2.1 Consensus size: 32
7821289 CTTTTTTAAA
*
7821299 ATTTTTTATATTTTTTCTAAAAATTGTATAAT
1 ATTTTTTATATTTTTTCTAAAAATTGTATAAC
* *
7821331 ATTTTTCTATA-TTTTTCTAAAATTTTTATAAC
1 ATTTTT-TATATTTTTTCTAAAAATTGTATAAC
7821363 ATTT
1 ATTT
7821367 AAAAATTTTC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
32 28 0.88
33 4 0.12
ACGTcount: A:0.32, C:0.06, G:0.01, T:0.60
Consensus pattern (32 bp):
ATTTTTTATATTTTTTCTAAAAATTGTATAAC
Found at i:7821378 original size:39 final size:39
Alignment explanation
Indices: 7821333--7821436 Score: 115
Period size: 39 Copynumber: 2.6 Consensus size: 39
7821323 TGTATAATAT
7821333 TTTTCTATATTTTTCTAAAATTTTTATAAC-ATTTAAAAA
1 TTTTCTATATTTTT-TAAAATTTTTATAACTATTTAAAAA
* * *
7821372 TTTTCTATATTTTTT-ATATTTTAAATAACTATTTATAAA
1 TTTTCTATATTTTTTAAAATTTT-TATAACTATTTAAAAA
7821411 -TTTCTAATAATTTTTTATAAATTTTT
1 TTTTCT-AT-ATTTTTTA-AAATTTTT
7821437 TAATTTATAT
Statistics
Matches: 54, Mismatches: 5, Indels: 10
0.78 0.07 0.14
Matches are distributed among these distances:
37 6 0.11
38 11 0.20
39 24 0.44
40 7 0.13
42 6 0.11
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.59
Consensus pattern (39 bp):
TTTTCTATATTTTTTAAAATTTTTATAACTATTTAAAAA
Found at i:7821419 original size:21 final size:21
Alignment explanation
Indices: 7821395--7821434 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7821385 TTATATTTTA
7821395 AATAACTATTTATAAATTTCT
1 AATAACTATTTATAAATTTCT
* *
7821416 AATAATTTTTTATAAATTT
1 AATAACTATTTATAAATTT
7821435 TTTAATTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (21 bp):
AATAACTATTTATAAATTTCT
Found at i:7821430 original size:10 final size:10
Alignment explanation
Indices: 7821290--7821442 Score: 55
Period size: 10 Copynumber: 15.3 Consensus size: 10
7821280 TTTTCTATGC
*
7821290 TTTTTTAAAA
1 TTTTTTATAA
7821300 TTTTTTAT-A
1 TTTTTTATAA
*
7821309 TTTTTTCTAAA
1 TTTTTTAT-AA
** *
7821320 AATTGTATAA
1 TTTTTTATAA
*
7821330 TATTTTTCTATA
1 T-TTTTTATA-A
7821342 TTTTTCTA-AA
1 TTTTT-TATAA
*
7821352 ATTTTTATAA
1 TTTTTTATAA
** * *
7821362 CATTTAAAAA
1 TTTTTTATAA
*
7821372 TTTTCTAT-A
1 TTTTTTATAA
7821381 TTTTTTAT-A
1 TTTTTTATAA
**
7821390 TTTTAAATAA
1 TTTTTTATAA
* *
7821400 CTATTTATAAA
1 TTTTTTAT-AA
* *
7821411 TTTCTAATAA
1 TTTTTTATAA
7821421 TTTTTTATAA
1 TTTTTTATAA
*
7821431 ATTTTT-TAA
1 TTTTTTATAA
7821440 TTT
1 TTT
7821443 ATATAAAATA
Statistics
Matches: 99, Mismatches: 36, Indels: 17
0.65 0.24 0.11
Matches are distributed among these distances:
9 30 0.30
10 45 0.45
11 21 0.21
12 3 0.03
ACGTcount: A:0.35, C:0.05, G:0.01, T:0.59
Consensus pattern (10 bp):
TTTTTTATAA
Found at i:7821567 original size:20 final size:21
Alignment explanation
Indices: 7821542--7821584 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
7821532 CATCTTTTTT
7821542 CCATGTTAGC-TACCACATCA
1 CCATGTTAGCTTACCACATCA
*
7821562 CCATGTTAGCTTAGCACATCA
1 CCATGTTAGCTTACCACATCA
7821583 CC
1 CC
7821585 CACCACGTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.28, C:0.35, G:0.12, T:0.26
Consensus pattern (21 bp):
CCATGTTAGCTTACCACATCA
Found at i:7827127 original size:15 final size:16
Alignment explanation
Indices: 7827107--7827139 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
7827097 CTAAATTGAA
7827107 TAAAATTTAA-AAATT
1 TAAAATTTAAGAAATT
7827122 TAAAATTTAAGAAATT
1 TAAAATTTAAGAAATT
7827138 TA
1 TA
7827140 TATAAAATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (16 bp):
TAAAATTTAAGAAATT
Found at i:7829220 original size:75 final size:75
Alignment explanation
Indices: 7829132--7829278 Score: 199
Period size: 75 Copynumber: 2.0 Consensus size: 75
7829122 CACAAATACC
* * *
7829132 GTTGGTTCATCCAACTAGAGCT-GGACTCACATTTAATATGGTCGGTATATC-CGACTAGTGCTG
1 GTTGGTTCATCCAACTAGAGCTAGG-CTCACATTCAATATGGTCGGT-TAACTCGACTAGTGCTA
*
7829195 GGCGTAAACATT
64 GGCGCAAACATT
* * *
7829207 GTTGGTTTATCCAACTAGAGCTAGGCTCACATTCAATATTGTTGGTTAACTCGACTAGTGCTAGG
1 GTTGGTTCATCCAACTAGAGCTAGGCTCACATTCAATATGGTCGGTTAACTCGACTAGTGCTAGG
7829272 CGCAAAC
66 CGCAAAC
7829279 TCCTCTAGGT
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
74 3 0.05
75 58 0.92
76 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (75 bp):
GTTGGTTCATCCAACTAGAGCTAGGCTCACATTCAATATGGTCGGTTAACTCGACTAGTGCTAGG
CGCAAACATT
Found at i:7831147 original size:26 final size:26
Alignment explanation
Indices: 7831111--7831165 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
7831101 GGCTTAACTT
7831111 TATATTTTTAGAATCCTGAATGAGTC
1 TATATTTTTAGAATCCTGAATGAGTC
7831137 TATATTTTTAGAATCCTGAATGAGTC
1 TATATTTTTAGAATCCTGAATGAGTC
7831163 TAT
1 TAT
7831166 CTTCAATAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.31, C:0.11, G:0.15, T:0.44
Consensus pattern (26 bp):
TATATTTTTAGAATCCTGAATGAGTC
Found at i:7835273 original size:26 final size:25
Alignment explanation
Indices: 7835244--7835310 Score: 71
Period size: 26 Copynumber: 2.6 Consensus size: 25
7835234 ATATGAAAAC
* *
7835244 TTAAAATAAATAATATATATACTGAT
1 TTAAAATAAATAATATATAAAAT-AT
* *
7835270 TTAACATAAATAATGTATAAAATAT
1 TTAAAATAAATAATATATAAAATAT
* *
7835295 TTAGAATAAATGATAT
1 TTAAAATAAATAATAT
7835311 GAAAAGAGAA
Statistics
Matches: 33, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
25 14 0.42
26 19 0.58
ACGTcount: A:0.54, C:0.03, G:0.06, T:0.37
Consensus pattern (25 bp):
TTAAAATAAATAATATATAAAATAT
Found at i:7850113 original size:26 final size:27
Alignment explanation
Indices: 7850021--7850127 Score: 98
Period size: 26 Copynumber: 4.1 Consensus size: 27
7850011 ACAATATAAC
*
7850021 TAAATAACATAT-AAAA-A-TTCAAAA
1 TAAATAACATATAAAAATAGTTTAAAA
* *
7850045 TAAATAATATATATCAAATAGTTTAAAA
1 TAAATAACATATA-AAAATAGTTTAAAA
7850073 TAAATAACATATAAAAATA-TTTAAAA
1 TAAATAACATATAAAAATAGTTTAAAA
* * * **
7850099 TGAATAATATGT-AAAACGGTTTAAAA
1 TAAATAACATATAAAAATAGTTTAAAA
7850125 TAA
1 TAA
7850128 CTAATGCAAA
Statistics
Matches: 67, Mismatches: 11, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
24 11 0.16
25 4 0.06
26 28 0.42
27 6 0.09
28 18 0.27
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.31
Consensus pattern (27 bp):
TAAATAACATATAAAAATAGTTTAAAA
Found at i:7850121 original size:52 final size:51
Alignment explanation
Indices: 7850021--7850127 Score: 135
Period size: 52 Copynumber: 2.1 Consensus size: 51
7850011 ACAATATAAC
*
7850021 TAAATAACATATAAAAATTCAAAATAAATAATATATATCAAATAGTTTAAAA
1 TAAATAACATATAAAAATTCAAAATAAATAATATATA-CAAACAGTTTAAAA
* * * *
7850073 TAAATAACATATAAAAATATTTAAAATGAATAATATGTA-AAACGGTTTAAAA
1 TAAATAACATAT-AAAA-ATTCAAAATAAATAATATATACAAACAGTTTAAAA
7850125 TAA
1 TAA
7850128 CTAATGCAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
52 26 0.54
53 4 0.08
54 18 0.38
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.31
Consensus pattern (51 bp):
TAAATAACATATAAAAATTCAAAATAAATAATATATACAAACAGTTTAAAA
Found at i:7850149 original size:23 final size:23
Alignment explanation
Indices: 7850119--7850173 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
7850109 GTAAAACGGT
* *
7850119 TTAAAATAACTAATGCAAAA-GAC
1 TTAAAATAA-AAATACAAAATGAC
*
7850142 TTAAAATAAAAATATAAAATGAC
1 TTAAAATAAAAATACAAAATGAC
7850165 TTAAAATAA
1 TTAAAATAA
7850174 TATACAATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
22 7 0.25
23 21 0.75
ACGTcount: A:0.62, C:0.07, G:0.05, T:0.25
Consensus pattern (23 bp):
TTAAAATAAAAATACAAAATGAC
Found at i:7862418 original size:46 final size:46
Alignment explanation
Indices: 7862191--7862417 Score: 339
Period size: 46 Copynumber: 4.9 Consensus size: 46
7862181 TTTGACATGA
* * * * * *
7862191 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCACGT
* *
7862237 TGCCATAGTATCTTTCAACCATGGTCTTACACATTCCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGT
*
7862283 TGCCATGGTATCTTTCAACCATGGTCTTACACATTCCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGT
* *
7862329 TGCCATGGTATCTTTCAACCATTGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGT
7862375 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
7862418 GAAAGCACAC
Statistics
Matches: 169, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 3 0.02
46 166 0.98
ACGTcount: A:0.23, C:0.26, G:0.13, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGT
Found at i:7865919 original size:24 final size:24
Alignment explanation
Indices: 7865887--7865944 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
7865877 TTCTATACAT
* *
7865887 GTATGCTCTTGCAAGCCATAATCG
1 GTATGCTCTTACAAGACATAATCG
*
7865911 GTATGCTCTTACGAGACATAATCG
1 GTATGCTCTTACAAGACATAATCG
* *
7865935 ATAAGCTCTT
1 GTATGCTCTT
7865945 TCGAGCAAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (24 bp):
GTATGCTCTTACAAGACATAATCG
Found at i:7865990 original size:25 final size:23
Alignment explanation
Indices: 7865906--7865998 Score: 96
Period size: 24 Copynumber: 3.9 Consensus size: 23
7865896 TGCAAGCCAT
* * *
7865906 AATCGGTATGCTCTTACGAGACAT
1 AATCGGTAAGCTCATACGAG-CAA
* * *
7865930 AATCGATAAGCTCTTTCGAGCAA
1 AATCGGTAAGCTCATACGAGCAA
7865953 AATACGGTAAGCTCATACGAGCTAA
1 AAT-CGGTAAGCTCATACGAGC-AA
7865978 GAATCGGTAAGCTCATACGAG
1 -AATCGGTAAGCTCATACGAG
7865999 TTATGGTGAG
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
23 5 0.08
24 32 0.54
25 19 0.32
26 3 0.05
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (23 bp):
AATCGGTAAGCTCATACGAGCAA
Found at i:7869259 original size:14 final size:14
Alignment explanation
Indices: 7869240--7869266 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7869230 TAGTACCTTA
7869240 TGAAACATATTTCG
1 TGAAACATATTTCG
7869254 TGAAACATATTTC
1 TGAAACATATTTC
7869267 ATAATGCAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (14 bp):
TGAAACATATTTCG
Found at i:7881833 original size:52 final size:53
Alignment explanation
Indices: 7881768--7881896 Score: 129
Period size: 51 Copynumber: 2.5 Consensus size: 53
7881758 AGAGGTTTAC
** *
7881768 AAATAA-ATAATAAAAAATTTAAAACAGTTAACATATATAAAACAATAT-AACT
1 AAATAACAT-ATAAAAAATTTAAAACAAATAACATATATAAAACAATATAAAAT
* * * * * * *
7881820 AAATAACATAT-AAAAATTCAAAATAAATAATATATATCAAATAGTTTAAAAT
1 AAATAACATATAAAAAATTTAAAACAAATAACATATATAAAACAATATAAAAT
7881872 AAATAACATATAAAAATATTTAAAA
1 AAATAACATATAAAAA-ATTTAAAA
7881897 TGAATAATAT
Statistics
Matches: 62, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
51 27 0.44
52 22 0.35
53 6 0.10
54 7 0.11
ACGTcount: A:0.64, C:0.06, G:0.02, T:0.29
Consensus pattern (53 bp):
AAATAACATATAAAAAATTTAAAACAAATAACATATATAAAACAATATAAAAT
Found at i:7881911 original size:26 final size:27
Alignment explanation
Indices: 7881819--7881925 Score: 98
Period size: 26 Copynumber: 4.1 Consensus size: 27
7881809 ACAATATAAC
*
7881819 TAAATAACATAT-AAAA-A-TTCAAAA
1 TAAATAACATATAAAAATAGTTTAAAA
* *
7881843 TAAATAATATATATCAAATAGTTTAAAA
1 TAAATAACATATA-AAAATAGTTTAAAA
7881871 TAAATAACATATAAAAATA-TTTAAAA
1 TAAATAACATATAAAAATAGTTTAAAA
* * * **
7881897 TGAATAATATGT-AAAACGGTTTAAAA
1 TAAATAACATATAAAAATAGTTTAAAA
7881923 TAA
1 TAA
7881926 CTAATGCAAA
Statistics
Matches: 67, Mismatches: 11, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
24 11 0.16
25 4 0.06
26 28 0.42
27 6 0.09
28 18 0.27
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.31
Consensus pattern (27 bp):
TAAATAACATATAAAAATAGTTTAAAA
Found at i:7881919 original size:52 final size:51
Alignment explanation
Indices: 7881819--7881925 Score: 135
Period size: 52 Copynumber: 2.1 Consensus size: 51
7881809 ACAATATAAC
*
7881819 TAAATAACATATAAAAATTCAAAATAAATAATATATATCAAATAGTTTAAAA
1 TAAATAACATATAAAAATTCAAAATAAATAATATATA-CAAACAGTTTAAAA
* * * *
7881871 TAAATAACATATAAAAATATTTAAAATGAATAATATGTA-AAACGGTTTAAAA
1 TAAATAACATAT-AAAA-ATTCAAAATAAATAATATATACAAACAGTTTAAAA
7881923 TAA
1 TAA
7881926 CTAATGCAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
52 26 0.54
53 4 0.08
54 18 0.38
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.31
Consensus pattern (51 bp):
TAAATAACATATAAAAATTCAAAATAAATAATATATACAAACAGTTTAAAA
Found at i:7881947 original size:23 final size:23
Alignment explanation
Indices: 7881917--7881971 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
7881907 GTAAAACGGT
* *
7881917 TTAAAATAACTAATGCAAAA-GAC
1 TTAAAATAA-AAATACAAAATGAC
*
7881940 TTAAAATAAAAATATAAAATGAC
1 TTAAAATAAAAATACAAAATGAC
7881963 TTAAAATAA
1 TTAAAATAA
7881972 TATACAATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
22 7 0.25
23 21 0.75
ACGTcount: A:0.62, C:0.07, G:0.05, T:0.25
Consensus pattern (23 bp):
TTAAAATAAAAATACAAAATGAC
Found at i:7886635 original size:17 final size:18
Alignment explanation
Indices: 7886613--7886652 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
7886603 GAGACTTTTT
* *
7886613 AAAAAA-AAATCAAAATA
1 AAAAAAGAAATAAAAAGA
7886630 AAAAAAGAAATAAAAAGA
1 AAAAAAGAAATAAAAAGA
7886648 AAAAA
1 AAAAA
7886653 TCAAAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.85, C:0.03, G:0.05, T:0.07
Consensus pattern (18 bp):
AAAAAAGAAATAAAAAGA
Found at i:7886669 original size:22 final size:23
Alignment explanation
Indices: 7886632--7886678 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
7886622 TCAAAATAAA
7886632 AAAAGAAATAAAAAGAAAAAATC
1 AAAAGAAATAAAAAGAAAAAATC
* *
7886655 AAAA-AAATAAGAAGAAATAATC
1 AAAAGAAATAAAAAGAAAAAATC
7886677 AA
1 AA
7886679 TCAAAGAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.77, C:0.04, G:0.09, T:0.11
Consensus pattern (23 bp):
AAAAGAAATAAAAAGAAAAAATC
Found at i:7887981 original size:64 final size:64
Alignment explanation
Indices: 7887790--7887981 Score: 269
Period size: 64 Copynumber: 3.0 Consensus size: 64
7887780 TCATTTATAA
* *
7887790 CACATCTAGTTAGGAGCAGTTGATTCATTTCGATCATAGCATCCTAATTATTTGACA-ACAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGACCATAGCATCCTAATTATTTGACATA-AGCAT
* * *
7887854 CACATCTAGTTAGGAGCATTTGATTCATTTCGACCTTAGCATTCTAATTATTTGACATTAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGACCATAGCATCCTAATTATTTGACATAAGCAT
* * * * * *
7887918 CACATCTAGTTAGGAGTATTTGAGTCATTTTGAGCATAACATCCTAATTATTTGGCATAAGCAT
1 CACATCTAGTTAGGAGCATTTGATTCATTTCGACCATAGCATCCTAATTATTTGACATAAGCAT
7887982 GATACATGAA
Statistics
Matches: 113, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
64 113 1.00
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (64 bp):
CACATCTAGTTAGGAGCATTTGATTCATTTCGACCATAGCATCCTAATTATTTGACATAAGCAT
Found at i:7888428 original size:44 final size:46
Alignment explanation
Indices: 7888365--7888460 Score: 128
Period size: 44 Copynumber: 2.2 Consensus size: 46
7888355 GCCCTAAAGC
** *
7888365 CTTAT-TTCTCTGAGGTAGCAA-GAGAGCAGGTTGAAGATTGAAG-T
1 CTTATCTTCTCTGAGGTAGCAAGGA-AGCAGACTGAAGACTGAAGAT
7888409 CTTATCTTC-CTGAGGTAGCAAGGAAGCAGACTGAAGACTGAAGAT
1 CTTATCTTCTCTGAGGTAGCAAGGAAGCAGACTGAAGACTGAAGAT
7888454 CTTATCT
1 CTTATCT
7888461 CCTTAAACAG
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
44 33 0.72
45 13 0.28
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (46 bp):
CTTATCTTCTCTGAGGTAGCAAGGAAGCAGACTGAAGACTGAAGAT
Found at i:7888615 original size:175 final size:176
Alignment explanation
Indices: 7888317--7888804 Score: 737
Period size: 175 Copynumber: 2.8 Consensus size: 176
7888307 ATTGAAGGCA
* * *
7888317 AATCTTATCTCCATGTATCGGCAATGGAGAAGATTTAAGCC-CTAAAGCCTTATTTCTCTGAGGT
1 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTA-CCACT--AGCCTTATCTCTCTGAGGT
*
7888381 AGCAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGA
63 AGCAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAA
* *
7888446 CTGAAGATCTTATCTCCTTAAACAGTAGCGGAACAGATCAAAGATGGCG
128 TTGAAGATCTTATATCCTTAAACAGTAGCGGAACAGATCAAAGATGGCG
*
7888495 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTACCACTAGCCTTATCTCTTTGAGGTAGC
1 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTACCACTAGCCTTATCTCTCTGAGGTAGC
* * *
7888560 AAGAAAGCAGGTTGAAGAATG-AGTCTTATCTTCCTGAGGTAACAAGGAAGCAGACTGAAAATTG
66 AAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTG
* * * * * *
7888624 AAGATTTTATATCTTTAAACAGTAGGGGAGCAGATCGAAGATGGTG
131 AAGATCTTATATCCTTAAACAGTAGCGGAACAGATCAAAGATGGCG
* * * *
7888670 AATCTTATCTCCATATATCGGCAATGGAGCTGATTTTACCACCAACCTTATCTCTCTGAGGTAGC
1 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTACCACTAGCCTTATCTCTCTGAGGTAGC
* *
7888735 AAGAGAGCAGGTTGAAGATTGAAGTCTTACCTTCCTAAGGTAGCAAGGAAGCAGACTGAAAATTG
66 AAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTG
7888800 AAGAT
131 AAGAT
7888805 TGTAAAAGGC
Statistics
Matches: 282, Mismatches: 26, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
175 158 0.56
176 84 0.30
177 2 0.01
178 38 0.13
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (176 bp):
AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTACCACTAGCCTTATCTCTCTGAGGTAGC
AAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTG
AAGATCTTATATCCTTAAACAGTAGCGGAACAGATCAAAGATGGCG
Found at i:7888936 original size:147 final size:147
Alignment explanation
Indices: 7888670--7889096 Score: 621
Period size: 147 Copynumber: 2.9 Consensus size: 147
7888660 GAAGATGGTG
* *
7888670 AATCTTATCTCCATATATCGGCAATGGAGCTGATTTTA-CCACCAA-CCTTATCTCTCTGAGGTA
1 AATCTTATCTCCATATATCGGCAATGGAGCAGATTTAAGCC-CCAAGCCTTATCTCTCTGAGGTA
** * *
7888733 GCAAGAGAGCAGGTTGAAGATTGAAGTCTTACCTTCCTAAGGTAGCAAGGAAGCAGACTGAAAAT
65 GCAAGAGAGCAGGTTGAAGATTGAAGTCTTATTTTCCTGAGGTAGCAAGGAAGCAGACTGAAGAT
*
7888798 TGAAGATTGTAAA-AGGCA
130 TGAAGA-TGGAAAGAGGCA
7888816 AATCTTATCTCCATATATCGGCAATGGAGCAGATTTAAGCCCCAAGCCTTATCTCTCTGAGGTAG
1 AATCTTATCTCCATATATCGGCAATGGAGCAGATTTAAGCCCCAAGCCTTATCTCTCTGAGGTAG
* * *
7888881 CAAGAAAACAGGTTGAAAATTGAAGTCTTATTTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATT
66 CAAGAGAGCAGGTTGAAGATTGAAGTCTTATTTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATT
*
7888946 GAAGATGGAAAGAGGCG
131 GAAGATGGAAAGAGGCA
* * * *
7888963 AATCTTATCTCCATATACCGACAATGGAGCAGGTTTAAGCCTCAAGGCCTTATCTCTCTGAGGTA
1 AATCTTATCTCCATATATCGGCAATGGAGCAGATTTAAGCCCCAA-GCCTTATCTCTCTGAGGTA
* * *
7889028 GCAAGAGAGTAGGTTGAAGATTG-AGTCTTATCTTT-CTGAGGTAGTAAGAAAGCAGACTGAAGA
65 GCAAGAGAGCAGGTTGAAGATTGAAGTCTTAT-TTTCCTGAGGTAGCAAGGAAGCAGACTGAAGA
7889091 TTGAAG
129 TTGAAG
7889097 GTCATATCTC
Statistics
Matches: 255, Mismatches: 21, Indels: 9
0.89 0.07 0.03
Matches are distributed among these distances:
146 45 0.18
147 169 0.66
148 41 0.16
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (147 bp):
AATCTTATCTCCATATATCGGCAATGGAGCAGATTTAAGCCCCAAGCCTTATCTCTCTGAGGTAG
CAAGAGAGCAGGTTGAAGATTGAAGTCTTATTTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATT
GAAGATGGAAAGAGGCA
Found at i:7889066 original size:43 final size:43
Alignment explanation
Indices: 7889011--7889094 Score: 114
Period size: 43 Copynumber: 2.0 Consensus size: 43
7889001 GCCTCAAGGC
* * **
7889011 CTTATCTCTCTGAGGTAGCAAGAGAGTAGGTTGAAGATTGAGT
1 CTTATCTCTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGAGT
* *
7889054 CTTATCTTTCTGAGGTAGTAAGAAAGCAGACTGAAGATTGA
1 CTTATCTCTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGA
7889095 AGGTCATATC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.30
Consensus pattern (43 bp):
CTTATCTCTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGAGT
Found at i:7889260 original size:177 final size:176
Alignment explanation
Indices: 7888955--7889362 Score: 509
Period size: 177 Copynumber: 2.3 Consensus size: 176
7888945 TGAAGATGGA
* * * *
7888955 AAGA-GGCGAATCTTATCTCCATATACC-GACAATGGAGCAGGTTTAAGCCTCAAGGCCTTATCT
1 AAGATGGCGAATCTTATCTCCATGTACCAG-CAATGGAGCAGATTTAAGCCACTA-GCCTTATCT
* * *
7889018 CTCTGAGGTAGCAAGAGAGTAGGTTGAAGATTGAGTCTTATCTTTCTGAGGTAGTAAGAAAGCAG
64 CTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAG
** * *
7889083 ACTGAAGATTGAAGGTCATATCTCCCT-AAGCAGTAGTGGAGCAGATCG
129 ACTGAAGATTGAAAATC-TATCTCCCTAAAGCAGTAGCGGAGCAAATCG
*
7889131 AAGATGGCGAATCTTATCTCCATGTACCAGCAATGGAGCAGATTTTAGCCACTAGCCTTATCTCT
1 AAGATGGCGAATCTTATCTCCATGTACCAGCAATGGAGCAGATTTAAGCCACTAGCCTTATCTCT
** *
7889196 CTGAGGTAGCAAGAGAGCAGGTTGGCGATTTTG-GTCTTATCTTCCTGAGGTAGCAAGGAAGCAG
66 CTGAGGTAGCAAGAGAGCAGGTTGAAGA--TTGAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAG
* * *
7889260 ACTGAAGATTGAAAATCTATTTCCCTAAAGCAGTTGCGGAGCAAATTG
129 ACTGAAGATTGAAAATCTATCTCCCTAAAGCAGTAGCGGAGCAAATCG
* * * * * * * *
7889308 AGGATGACGAATCTTGTCTCTATGTATCAGTAATAGAGCAGATTTAAGTCACTAG
1 AAGATGGCGAATCTTATCTCCATGTACCAGCAATGGAGCAGATTTAAGCCACTAG
7889363 TCCTATTTCC
Statistics
Matches: 200, Mismatches: 27, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
176 48 0.24
177 148 0.74
178 4 0.02
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (176 bp):
AAGATGGCGAATCTTATCTCCATGTACCAGCAATGGAGCAGATTTAAGCCACTAGCCTTATCTCT
CTGAGGTAGCAAGAGAGCAGGTTGAAGATTGAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGAC
TGAAGATTGAAAATCTATCTCCCTAAAGCAGTAGCGGAGCAAATCG
Found at i:7895684 original size:21 final size:21
Alignment explanation
Indices: 7895659--7895727 Score: 56
Period size: 21 Copynumber: 3.3 Consensus size: 21
7895649 AACCCCATTT
7895659 TTATTTTATTTTACTTTATTA
1 TTATTTTATTTTACTTTATTA
*
7895680 TTA--TTATTTT--TATATTA
1 TTATTTTATTTTACTTTATTA
* *
7895697 TTTATTATTATTTTACTATTTTTT
1 -TTATT-TTATTTTACT-TTATTA
7895721 TTATTTT
1 TTATTTT
7895728 TTATTTTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 13
0.69 0.07 0.24
Matches are distributed among these distances:
17 6 0.16
18 3 0.08
19 7 0.19
21 10 0.27
22 2 0.05
23 6 0.16
24 3 0.08
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (21 bp):
TTATTTTATTTTACTTTATTA
Found at i:7895688 original size:24 final size:24
Alignment explanation
Indices: 7895662--7895708 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
7895652 CCCATTTTTA
*
7895662 TTTTATTTTACTTTATTATTATTAT
1 TTTTATATTA-TTTATTATTATTAT
7895687 TTTTATATTATTTATTATTATT
1 TTTTATATTATTTATTATTATT
7895709 TTACTATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (24 bp):
TTTTATATTATTTATTATTATTAT
Found at i:7895724 original size:27 final size:27
Alignment explanation
Indices: 7895655--7895739 Score: 90
Period size: 27 Copynumber: 3.3 Consensus size: 27
7895645 AAGCAACCCC
7895655 ATTTT-TATTTTATTTTACTTTATTATT
1 ATTTTATATTTTATTTTA-TTTATTATT
*
7895682 A--TTAT-TTTTATATTATTTATTATT
1 ATTTTATATTTTATTTTATTTATTATT
*
7895706 ATTTTACTATTTT-TTTTATTTTTTATT
1 ATTTTA-TATTTTATTTTATTTATTATT
*
7895733 TTTTTAT
1 ATTTTAT
7895740 TCTTATGCTT
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
24 10 0.20
25 11 0.22
26 5 0.10
27 19 0.39
28 4 0.08
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.75
Consensus pattern (27 bp):
ATTTTATATTTTATTTTATTTATTATT
Found at i:7895730 original size:59 final size:56
Alignment explanation
Indices: 7895655--7895778 Score: 126
Period size: 59 Copynumber: 2.2 Consensus size: 56
7895645 AAGCAACCCC
** * *
7895655 ATTTTTATTTTA--TTTTACTTTATTATTATTATTTTTATATTATTTATTATTATTTTA
1 ATTTTT-TTTTATTTTTTACTTTATTATTATTATGCTTATATT-TTAAAT-TTATTTTA
* * * *
7895712 CTATTTTTTTTATTTTTTATTTTTTTATTCTTATGCTTATATTTTAAATTTATTTTA
1 AT-TTTTTTTTATTTTTTACTTTATTATTATTATGCTTATATTTTAAATTTATTTTA
7895769 ATTTTTTTTT
1 ATTTTTTTTT
7895779 GCTATATCTA
Statistics
Matches: 55, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
56 8 0.15
57 15 0.27
58 8 0.15
59 24 0.44
ACGTcount: A:0.23, C:0.03, G:0.01, T:0.73
Consensus pattern (56 bp):
ATTTTTTTTTATTTTTTACTTTATTATTATTATGCTTATATTTTAAATTTATTTTA
Found at i:7896908 original size:23 final size:23
Alignment explanation
Indices: 7896878--7896924 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
7896868 TTCTTATTGT
*
7896878 TCAAAAAAAAGAAAATCAAAAAA
1 TCAAAAAAAAGAAAATAAAAAAA
* *
7896901 TCAAAAAAAATATAATAAAAAAA
1 TCAAAAAAAAGAAAATAAAAAAA
7896924 T
1 T
7896925 ATTGATTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.77, C:0.06, G:0.02, T:0.15
Consensus pattern (23 bp):
TCAAAAAAAAGAAAATAAAAAAA
Found at i:7898633 original size:14 final size:14
Alignment explanation
Indices: 7898614--7898643 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7898604 ATTGCGTTCA
*
7898614 TAGTTATATTAGAT
1 TAGTTAAATTAGAT
7898628 TAGTTAAATTAGAT
1 TAGTTAAATTAGAT
7898642 TA
1 TA
7898644 AAAACAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.13, T:0.47
Consensus pattern (14 bp):
TAGTTAAATTAGAT
Found at i:7900327 original size:27 final size:27
Alignment explanation
Indices: 7900284--7900347 Score: 78
Period size: 28 Copynumber: 2.4 Consensus size: 27
7900274 TTTAATCGTA
7900284 TTTA-AATTATACCTATAA-CATTAAT
1 TTTATAATTATACCTATAAGCATTAAT
* *
7900309 TTTATAATTTTACTCTATAAGCATTTAT
1 TTTATAATTATAC-CTATAAGCATTAAT
7900337 TTTACTAATTA
1 TTTA-TAATTA
7900348 AAATTAACTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
25 4 0.12
26 7 0.22
27 6 0.19
28 10 0.31
29 5 0.16
ACGTcount: A:0.38, C:0.11, G:0.02, T:0.50
Consensus pattern (27 bp):
TTTATAATTATACCTATAAGCATTAAT
Found at i:7901720 original size:22 final size:22
Alignment explanation
Indices: 7901686--7901742 Score: 57
Period size: 22 Copynumber: 2.5 Consensus size: 22
7901676 CAATTTAATC
7901686 CTAACTAATTTC-ACTTACTTTT
1 CTAACTAATTTCAACTT-CTTTT
7901708 CTAACTCAA-TTCATACTTCTTTT
1 CTAACT-AATTTCA-ACTTCTTTT
7901731 CT-ACTTAATTTC
1 CTAAC-TAATTTC
7901743 TTGATATATT
Statistics
Matches: 30, Mismatches: 0, Indels: 9
0.77 0.00 0.23
Matches are distributed among these distances:
22 13 0.43
23 13 0.43
24 4 0.13
ACGTcount: A:0.26, C:0.25, G:0.00, T:0.49
Consensus pattern (22 bp):
CTAACTAATTTCAACTTCTTTT
Found at i:7904421 original size:21 final size:20
Alignment explanation
Indices: 7904383--7904421 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
7904373 AGCATTGAAT
* *
7904383 TTGGTAATGATGATGAGGAG
1 TTGGTAATGACGAAGAGGAG
7904403 TTGGTATATGACGAAGAGG
1 TTGGTA-ATGACGAAGAGG
7904422 GTAATGATCC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.31, C:0.03, G:0.38, T:0.28
Consensus pattern (20 bp):
TTGGTAATGACGAAGAGGAG
Found at i:7911533 original size:22 final size:22
Alignment explanation
Indices: 7911508--7911550 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
7911498 TAATTAAGAA
*
7911508 ACTTTAATTCATTCAATGTAAT
1 ACTTTAATTAATTCAATGTAAT
* *
7911530 ACTTTTATTAATTGAATGTAA
1 ACTTTAATTAATTCAATGTAA
7911551 AGGAGCTTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.37, C:0.09, G:0.07, T:0.47
Consensus pattern (22 bp):
ACTTTAATTAATTCAATGTAAT
Found at i:7914704 original size:131 final size:130
Alignment explanation
Indices: 7914315--7914705 Score: 575
Period size: 131 Copynumber: 3.0 Consensus size: 130
7914305 TAATTATTCA
* * * * *
7914315 TTTAAAAATTCTTTAAAACAAAGGCAATACTCGATGTTTGGCAATCCGGGAATCGTGCCCTATCG
1 TTTAAAAATTCTTCAAAACGAAGGTAATACTCGATGTTTAGCAATCGGGGAATCGTGCCCTATCG
* * * * * *
7914380 TGCTGGGTCGCGATTTCCTGTTTGTTCAAAACAATCAAATATTCCTCTGGAATTTCACTCATATC
66 TGCTGGGTTGCGATTTCCTATTTGTTCAAAATAATCGAATATTCCTTTGGAATTTCACTCATGTC
** * *
7914445 TTTAAAAATTCTTCAAAACGAAGGTAATGTTCGATGTTCAGCAAGTCGGGGAATCGTGCCTTATC
1 TTTAAAAATTCTTCAAAACGAAGGTAATACTCGATGTTTAGCAA-TCGGGGAATCGTGCCCTATC
* *
7914510 GTGCTGGGTTGCGATTTCCTATTTGTTCAAAATAATCGAATAGTCCTTTGGAATGTCACTCATGT
65 GTGCTGGGTTGCGATTTCCTATTTGTTCAAAATAATCGAATATTCCTTTGGAATTTCACTCATGT
7914575 C
130 C
*
7914576 TTTAAAAACTCTTCAAAACGAAGGTAATACTCGATGTTTAGCAATTCGGGGAATCGTGCCCTATC
1 TTTAAAAATTCTTCAAAACGAAGGTAATACTCGATGTTTAGCAA-TCGGGGAATCGTGCCCTATC
* * *
7914641 GTGCTGGGTTGCGATTTCCTATTTGTTCGAAATAACCGAATATTCCTTTAGAATTTCACTCATGT
65 GTGCTGGGTTGCGATTTCCTATTTGTTCAAAATAATCGAATATTCCTTTGGAATTTCACTCATGT
7914706 TCTCTAAATT
Statistics
Matches: 232, Mismatches: 28, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
130 37 0.16
131 195 0.84
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (130 bp):
TTTAAAAATTCTTCAAAACGAAGGTAATACTCGATGTTTAGCAATCGGGGAATCGTGCCCTATCG
TGCTGGGTTGCGATTTCCTATTTGTTCAAAATAATCGAATATTCCTTTGGAATTTCACTCATGTC
Found at i:7923594 original size:19 final size:21
Alignment explanation
Indices: 7923567--7923606 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
7923557 TTATTCCCAA
*
7923567 AAACTTTTTA-TTTTCCCCCT
1 AAACTTTTTACTTTTCACCCT
7923587 AAAC-TTTTACTTTTCACCCT
1 AAACTTTTTACTTTTCACCCT
7923607 TTACTCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.23, C:0.30, G:0.00, T:0.47
Consensus pattern (21 bp):
AAACTTTTTACTTTTCACCCT
Found at i:7923866 original size:86 final size:86
Alignment explanation
Indices: 7923771--7923944 Score: 321
Period size: 86 Copynumber: 2.0 Consensus size: 86
7923761 ATTAAAATTG
*
7923771 AATTATTAATTATGCCATAAAATATTCGTGTTAAAATTTTATATTGGTATCAATTTCACATTTTA
1 AATTATTAATTATGCCATAAAATATTCGTGTTAAAATTTTATATTGGTATAAATTTCACATTTTA
7923836 TCTTTAAAATAAATTTTATTA
66 TCTTTAAAATAAATTTTATTA
*
7923857 AATTATTAATTATGCTATAAAATATTCGTGTTAAAATTTTATATTGGTATAAATTTCACATTTTA
1 AATTATTAATTATGCCATAAAATATTCGTGTTAAAATTTTATATTGGTATAAATTTCACATTTTA
*
7923922 TCTTTAAAATAACTTTTATTA
66 TCTTTAAAATAAATTTTATTA
7923943 AA
1 AA
7923945 AAATCACATT
Statistics
Matches: 85, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
86 85 1.00
ACGTcount: A:0.39, C:0.07, G:0.06, T:0.48
Consensus pattern (86 bp):
AATTATTAATTATGCCATAAAATATTCGTGTTAAAATTTTATATTGGTATAAATTTCACATTTTA
TCTTTAAAATAAATTTTATTA
Found at i:7925534 original size:14 final size:14
Alignment explanation
Indices: 7925515--7925541 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7925505 TAGTACCTTA
7925515 TGAAACATATTTCG
1 TGAAACATATTTCG
7925529 TGAAACATATTTC
1 TGAAACATATTTC
7925542 ATAATGCAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (14 bp):
TGAAACATATTTCG
Found at i:7928534 original size:25 final size:25
Alignment explanation
Indices: 7928506--7928573 Score: 109
Period size: 25 Copynumber: 2.7 Consensus size: 25
7928496 AGAAATGACT
*
7928506 TGGCACTAAGTGTGCGAAAATTGTA
1 TGGCACTAAGTGTGCGAAAATTCTA
*
7928531 TGGCACTAAGTGTGCGGAAATTCTA
1 TGGCACTAAGTGTGCGAAAATTCTA
*
7928556 TGGCACTATGTGTGCGAA
1 TGGCACTAAGTGTGCGAA
7928574 TATATATGGC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (25 bp):
TGGCACTAAGTGTGCGAAAATTCTA
Found at i:7931052 original size:16 final size:16
Alignment explanation
Indices: 7931015--7931056 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
7931005 AAGACTTGTT
*
7931015 TTTTATT-TTAATTTA
1 TTTTATTATTTATTTA
* *
7931030 ATGTATTATTTATTTA
1 TTTTATTATTTATTTA
7931046 TTTTATTATTT
1 TTTTATTATTT
7931057 TTCACATGTA
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
15 5 0.24
16 16 0.76
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.71
Consensus pattern (16 bp):
TTTTATTATTTATTTA
Found at i:7931611 original size:8 final size:9
Alignment explanation
Indices: 7931582--7931614 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
7931572 TTTAAACGGA
7931582 TTTAAATAT
1 TTTAAATAT
7931591 TTTAAATAT
1 TTTAAATAT
7931600 TTTAAATA-
1 TTTAAATAT
7931608 TTTAAAT
1 TTTAAAT
7931615 TTAAATCCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 7 0.29
9 17 0.71
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (9 bp):
TTTAAATAT
Found at i:7932958 original size:15 final size:16
Alignment explanation
Indices: 7932938--7932967 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
7932928 ATCAATCTAA
7932938 AATATTTTA-TAAATT
1 AATATTTTATTAAATT
7932953 AATATTTTATTAAAT
1 AATATTTTATTAAAT
7932968 GAATGAAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
AATATTTTATTAAATT
Found at i:7944527 original size:39 final size:40
Alignment explanation
Indices: 7944473--7944554 Score: 157
Period size: 40 Copynumber: 2.1 Consensus size: 40
7944463 GGACACTATC
7944473 ATCAAGTTATTGCTTGACAT-GCTCCATGACCCTACAATA
1 ATCAAGTTATTGCTTGACATCGCTCCATGACCCTACAATA
7944512 ATCAAGTTATTGCTTGACATCGCTCCATGACCCTACAATA
1 ATCAAGTTATTGCTTGACATCGCTCCATGACCCTACAATA
7944552 ATC
1 ATC
7944555 CTATGCTATA
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
39 20 0.48
40 22 0.52
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.30
Consensus pattern (40 bp):
ATCAAGTTATTGCTTGACATCGCTCCATGACCCTACAATA
Found at i:7946435 original size:20 final size:20
Alignment explanation
Indices: 7946412--7946452 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
7946402 TTTATTTATT
*
7946412 TTTTTAGAATTTTTTTAAAA
1 TTTTTAGAATTTTTTAAAAA
*
7946432 TTTTTATAATTTTTTAAAAA
1 TTTTTAGAATTTTTTAAAAA
7946452 T
1 T
7946453 ATAAAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (20 bp):
TTTTTAGAATTTTTTAAAAA
Found at i:7950232 original size:38 final size:38
Alignment explanation
Indices: 7950190--7950305 Score: 214
Period size: 38 Copynumber: 3.1 Consensus size: 38
7950180 TTGGAATAAT
7950190 TTGAGTTTAAATCATCATTGTACCCAAAAAAATAGCAC
1 TTGAGTTTAAATCATCATTGTACCCAAAAAAATAGCAC
7950228 TTGAGTTTAAATCATCATTGTACCCAAAAAAATAGCAC
1 TTGAGTTTAAATCATCATTGTACCCAAAAAAATAGCAC
* *
7950266 TTGAGTTTAAATCATCATTGTATCCTAAAAAATAGCAC
1 TTGAGTTTAAATCATCATTGTACCCAAAAAAATAGCAC
7950304 TT
1 TT
7950306 ATGGTATGAA
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 76 1.00
ACGTcount: A:0.41, C:0.17, G:0.10, T:0.32
Consensus pattern (38 bp):
TTGAGTTTAAATCATCATTGTACCCAAAAAAATAGCAC
Found at i:7950762 original size:29 final size:27
Alignment explanation
Indices: 7950692--7950766 Score: 71
Period size: 29 Copynumber: 2.6 Consensus size: 27
7950682 ATTGTATTTT
* *
7950692 ATTTTTTTATTTAAAAAAAGGTAAATTA
1 ATTTTTCTA-TTAAAAAAAAGTAAATTA
7950720 ATCTTTGTAC-ATTAAAAAAAAGTACAAATTA
1 AT-TTT-T-CTATTAAAAAAAAGT--AAATTA
7950751 ATTTTTCTATTAAAAA
1 ATTTTTCTATTAAAAA
7950767 TTTCATCTAC
Statistics
Matches: 39, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
28 3 0.08
29 23 0.59
30 5 0.13
31 8 0.21
ACGTcount: A:0.48, C:0.05, G:0.05, T:0.41
Consensus pattern (27 bp):
ATTTTTCTATTAAAAAAAAGTAAATTA
Found at i:7951580 original size:32 final size:32
Alignment explanation
Indices: 7951544--7951604 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
7951534 TTAATCATTA
7951544 TTTATAAACTATTATAATT-CTTAATAATTTTT
1 TTTAT-AACTATTATAATTACTTAATAATTTTT
* * *
7951576 TTTATAATTTTTATAATTATTTAATAATT
1 TTTATAACTATTATAATTACTTAATAATT
7951605 ATTTGAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 11 0.44
32 14 0.56
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (32 bp):
TTTATAACTATTATAATTACTTAATAATTTTT
Found at i:7953465 original size:17 final size:18
Alignment explanation
Indices: 7953431--7953469 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
7953421 GCTAGCATTT
*
7953431 AATATATAAATAATATAA
1 AATATAAAAATAATATAA
7953449 AATATAAAAAT-ATATAA
1 AATATAAAAATAATATAA
7953466 AATA
1 AATA
7953470 ATGTAATGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
AATATAAAAATAATATAA
Found at i:7953740 original size:5 final size:5
Alignment explanation
Indices: 7953726--7953797 Score: 55
Period size: 5 Copynumber: 15.0 Consensus size: 5
7953716 ATACATCTAC
* * * *
7953726 AATAT AATAT CATAT AATAT AATAA AATTT AAT-T ACATAT AATTT AA-A-
1 AATAT AATAT AATAT AATAT AATAT AATAT AATAT A-ATAT AATAT AATAT
7953774 AATA- AATAAT AATA- AATAT AATAT
1 AATAT AAT-AT AATAT AATAT AATAT
7953798 GATGGATAAT
Statistics
Matches: 54, Mismatches: 7, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
3 2 0.04
4 10 0.19
5 37 0.69
6 5 0.09
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (5 bp):
AATAT
Found at i:7955880 original size:206 final size:206
Alignment explanation
Indices: 7955507--7956268 Score: 1222
Period size: 206 Copynumber: 3.7 Consensus size: 206
7955497 AAATCTGCTT
* * * * *
7955507 CTTCGATTTGTTTTCTGACAATACAGAGATACCAAATCATCTTAGATTTGCTTCAACATAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* *
7955572 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTT
* * * **
7955637 GGATCTACTTCAGTATAAACATATGAAGGCCAGATCTGCTATGTGTCTGCTCTCCGTCGAATATA
131 AGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATA
*
7955702 GAGACACCAAA
196 GAGACGCCAAA
* *
7955713 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCTTCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
*
7955778 GTAAAAGCCAAATCAGCTATGGT-TTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCT
66 GTGAAAGCCAAATCAGCTAT-GTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCT
*
7955842 TAGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTACTCTCCGTCGAATAT
130 TAGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATAT
*
7955907 GGAGACGCCAAA
195 AGAGACGCCAAA
*
7955919 CTTCGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
*
7955984 GTGAAAGCCAAATCATCTATGGT-TTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCT
66 GTGAAAGCCAAATCAGCTAT-GTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCT
*
7956048 TAGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTTTCCGTCGAATAT
130 TAGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATAT
7956113 AGAGACGCCAAA
195 AGAGACGCCAAA
* * *
7956125 CTTCTATTTATTCTTTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* * * *
7956190 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTCCCTTGTAAGCACAATGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTT
*
7956255 GGATCTTGCTTCAG
131 AGATC-TGCTTCAG
7956269 CCAGATCTGC
Statistics
Matches: 517, Mismatches: 36, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
205 2 0.00
206 505 0.98
207 10 0.02
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.32
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTT
AGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAATATA
GAGACGCCAAA
Found at i:7968383 original size:5 final size:5
Alignment explanation
Indices: 7968369--7968440 Score: 55
Period size: 5 Copynumber: 15.0 Consensus size: 5
7968359 ATACATCTTC
* * * *
7968369 AATAT AATAT CATAT AATAT AATAA AATTT AAT-T ACATAT AATTT AA-A-
1 AATAT AATAT AATAT AATAT AATAT AATAT AATAT A-ATAT AATAT AATAT
7968417 AATA- AATAAT AATA- AATAT AATAT
1 AATAT AAT-AT AATAT AATAT AATAT
7968441 GATGGATAAT
Statistics
Matches: 54, Mismatches: 7, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
3 2 0.04
4 10 0.19
5 37 0.69
6 5 0.09
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (5 bp):
AATAT
Found at i:7975631 original size:3 final size:3
Alignment explanation
Indices: 7975623--7975655 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
7975613 AAATGAGTCA
*
7975623 TTC TTC TTC TTC TTC TTT TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
7975656 ACGGATGTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (3 bp):
TTC
Found at i:7976979 original size:27 final size:27
Alignment explanation
Indices: 7976941--7976992 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
7976931 AATTGCACGG
7976941 TTTTCTAAACTAAAGTTCTAGCCCCGA
1 TTTTCTAAACTAAAGTTCTAGCCCCGA
7976968 TTTTCTAAACTAAAGTTCTAGCCCC
1 TTTTCTAAACTAAAGTTCTAGCCCC
7976993 ATGACAATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.10, T:0.35
Consensus pattern (27 bp):
TTTTCTAAACTAAAGTTCTAGCCCCGA
Found at i:7979615 original size:26 final size:26
Alignment explanation
Indices: 7979568--7979626 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
7979558 CTTTATACAT
* *
7979568 AATAGATTTTAAAAATTATATATAAA
1 AATAGATTTAAAAAAATATATATAAA
7979594 AATAGATTTAAAAGAAATTATATATATAA
1 AATAGATTTAAAA-AAA-TATATATA-AA
7979623 AATA
1 AATA
7979627 ACATGGAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 12 0.43
27 2 0.07
28 8 0.29
29 6 0.21
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (26 bp):
AATAGATTTAAAAAAATATATATAAA
Found at i:7982765 original size:50 final size:50
Alignment explanation
Indices: 7982690--7982866 Score: 282
Period size: 50 Copynumber: 3.5 Consensus size: 50
7982680 CCATGGCAAC
* *
7982690 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
7982740 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
7982790 AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATGGC
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAAT-GA
* * *
7982841 AAGTAAAAAGTGGTAGCTTCGGCTAC
1 AAGTGATAAGTGATAGCTTCGGCTAC
7982867 CTGATCAATG
Statistics
Matches: 118, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
50 95 0.81
51 23 0.19
ACGTcount: A:0.35, C:0.16, G:0.23, T:0.26
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:7982884 original size:31 final size:31
Alignment explanation
Indices: 7982846--7982904 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
7982836 ATGGCAAGTA
*
7982846 AAAAGTGGTAGCTTCGGCTACCTGATCAATG
1 AAAAGTGGTAGCTTCGACTACCTGATCAATG
7982877 AAAAGTGGTAGCTTCGACTACCTGATCA
1 AAAAGTGGTAGCTTCGACTACCTGATCA
7982905 TCGGCTACTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (31 bp):
AAAAGTGGTAGCTTCGACTACCTGATCAATG
Found at i:7982912 original size:46 final size:46
Alignment explanation
Indices: 7982859--7982950 Score: 130
Period size: 46 Copynumber: 2.0 Consensus size: 46
7982849 AGTGGTAGCT
* *
7982859 TCGGCTACCTGATCAATGAAAAGTGGTAGCTTCGACTACCTGATCA
1 TCGGCTACCTGATCAATGAAAAATGGTAGCTCCGACTACCTGATCA
* * * *
7982905 TCGGCTACTTGATTAGTGAAAAATGGTAGCTCCGGCTACCTGATCA
1 TCGGCTACCTGATCAATGAAAAATGGTAGCTCCGACTACCTGATCA
7982951 GTGAATAGTG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (46 bp):
TCGGCTACCTGATCAATGAAAAATGGTAGCTCCGACTACCTGATCA
Found at i:7982954 original size:31 final size:31
Alignment explanation
Indices: 7982906--7982974 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
7982896 ACCTGATCAT
* * *
7982906 CGGCTACTTGATTAGTGAAAAATGGTAGCTC
1 CGGCTACCTGATCAGTGAAAAATGATAGCTC
* * *
7982937 CGGCTACCTGATCAGTGAATAGTGATAGCTT
1 CGGCTACCTGATCAGTGAAAAATGATAGCTC
7982968 CGGCTAC
1 CGGCTAC
7982975 AAGTGACAAG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (31 bp):
CGGCTACCTGATCAGTGAAAAATGATAGCTC
Found at i:7994645 original size:46 final size:46
Alignment explanation
Indices: 7994593--7994905 Score: 441
Period size: 46 Copynumber: 6.8 Consensus size: 46
7994583 AGTGTGCTCT
* *
7994593 CTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
7994639 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
7994685 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
7994731 GTGATATGAAATGAATAAGA-CATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
7994776 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** *
7994822 ATGACGGGAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
7994869 ATGACA-GAAAACGAGTAAAACCATAGTTGAAAGATAC
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATAC
7994906 TATGACATCA
Statistics
Matches: 249, Mismatches: 16, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
45 42 0.17
46 165 0.66
47 42 0.17
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:8001846 original size:24 final size:25
Alignment explanation
Indices: 8001809--8001861 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
8001799 CATTAATAAC
* *
8001809 AAAATAAGTGAAATAACTTAAAA-TA
1 AAAATAAATGAAATAA-ATAAAATTA
8001834 AAAATAAAT-AAATAAATAAAATTA
1 AAAATAAATGAAATAAATAAAATTA
8001858 AAAA
1 AAAA
8001862 CAGAAGGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 5 0.20
24 12 0.48
25 8 0.32
ACGTcount: A:0.72, C:0.02, G:0.04, T:0.23
Consensus pattern (25 bp):
AAAATAAATGAAATAAATAAAATTA
Found at i:8002078 original size:111 final size:111
Alignment explanation
Indices: 8001878--8002078 Score: 242
Period size: 111 Copynumber: 1.8 Consensus size: 111
8001868 GAAAGTATAG
* * * * *
8001878 GTAATATTAAATTTAAATGTTTAAAAAGCAGAATAATAATAAATAAATAAATGGACAAAACAAAT
1 GTAATATTAAATTTAAATATTTAAAAAGCAAAAGAATAATAAATAAATAAATAGACAAAACAAAA
** **
8001943 AATATTGAATTTAAGTATTTAAAAAAGGTAAAAGAAAAAGAAACAA
66 AATATAAAATTTAAGTATAAAAAAAAGGTAAAAGAAAAAGAAACAA
* * * * * * *
8001989 GTAATATTAAATTTAATTATTT-AAAAGTAAAAGAATAAATAGATAAGTAGATAGATAAGACAAA
1 GTAATATTAAATTTAAATATTTAAAAAGCAAAAGAAT-AATAAATAAATAAATAGACAAAACAAA
8002053 AAATATAAAATTTAAGTATAAAAAAA
65 AAATATAAAATTTAAGTATAAAAAAA
8002079 TAAATGAATA
Statistics
Matches: 73, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
110 11 0.15
111 62 0.85
ACGTcount: A:0.60, C:0.02, G:0.10, T:0.27
Consensus pattern (111 bp):
GTAATATTAAATTTAAATATTTAAAAAGCAAAAGAATAATAAATAAATAAATAGACAAAACAAAA
AATATAAAATTTAAGTATAAAAAAAAGGTAAAAGAAAAAGAAACAA
Found at i:8002090 original size:63 final size:63
Alignment explanation
Indices: 8001991--8002114 Score: 160
Period size: 63 Copynumber: 2.0 Consensus size: 63
8001981 AGAAACAAGT
* * ** * * *
8001991 AATATTAAATTTAATTATTTAAAAGTAAAAGAATAAATAGA-TAAGTAGATAGATAAGACAAAA
1 AATATAAAATTTAAGTATAAAAAAATAAAAGAATAAATA-ACTAAATAAATAGATAAGACAAAA
*
8002054 AATATAAAATTTAAGTATAAAAAAATAAATGAATAAATAACTAAATAAATAGATAAGACAA
1 AATATAAAATTTAAGTATAAAAAAATAAAAGAATAAATAACTAAATAAATAGATAAGACAA
8002115 CTATGAATAA
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
62 1 0.02
63 51 0.98
ACGTcount: A:0.62, C:0.02, G:0.09, T:0.27
Consensus pattern (63 bp):
AATATAAAATTTAAGTATAAAAAAATAAAAGAATAAATAACTAAATAAATAGATAAGACAAAA
Found at i:8003480 original size:15 final size:16
Alignment explanation
Indices: 8003460--8003504 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 16
8003450 ATGGACTATT
8003460 TTTTA-TTTTATTATC
1 TTTTATTTTTATTATC
*
8003475 TTTTATTTTTATTATT
1 TTTTATTTTTATTATC
8003491 TGGTTTATTTTTAT
1 T--TTTATTTTTAT
8003505 CCTGGCCGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 5 0.19
16 10 0.38
18 11 0.42
ACGTcount: A:0.18, C:0.02, G:0.04, T:0.76
Consensus pattern (16 bp):
TTTTATTTTTATTATC
Found at i:8003962 original size:51 final size:51
Alignment explanation
Indices: 8003894--8004120 Score: 183
Period size: 51 Copynumber: 4.6 Consensus size: 51
8003884 TTCAGTCTGC
*
8003894 TCCAC-GCAACTTCAGGGAGATAAGATTTGTAGCTTGTAGCTTTAGTCTAT
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTGTAACTTTAGTCTAT
* * * * *
8003944 TCCATTGCAACTTCAGGGAGATAAGACTTGTTA--TAGTAGA-TTTAATCCGA-
1 TCCACTGCAACTTCAGGGAGATAAGATTTG-TAGCTTGTA-ACTTTAGT-CTAT
* * * * * * *
8003994 CCCACTGCAACTTCAAAGG-TATAAGACTTGTCGCTT-CAAC-CT-G--T-T
1 TCCACTGCAACTTC-AGGGAGATAAGATTTGTAGCTTGTAACTTTAGTCTAT
*
8004039 T-CACTGCAACTTCAAGGAGATAAGATTTGTAGCTTGTAACTTTAGTCTAT
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTGTAACTTTAGTCTAT
* *
8004089 TCCACTGCAACTTCAGAGAGATAGGATTTGTA
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTA
8004121 TCTTCAATCC
Statistics
Matches: 135, Mismatches: 25, Indels: 33
0.70 0.13 0.17
Matches are distributed among these distances:
43 4 0.03
44 26 0.19
45 3 0.02
46 1 0.01
47 1 0.01
49 4 0.03
50 38 0.28
51 56 0.41
52 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.32
Consensus pattern (51 bp):
TCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTGTAACTTTAGTCTAT
Found at i:8004099 original size:145 final size:144
Alignment explanation
Indices: 8003707--8004111 Score: 537
Period size: 144 Copynumber: 2.8 Consensus size: 144
8003697 CAATCTATTT
* *
8003707 CACTGCAACTTCAGAGAG-ATAATA-TTAGTAGCTTCAATCTGCTTT-ACCGCAACTTCAAGGAG
1 CACTGCAACTTCAGAG-GTATAAGACTT-GTCGCTTCAATCTG-TTTCA-CGCAACTTCAAGGAG
* * * *
8003769 ATAAGATTTGTAACATGCAACTTTAGTCTATTCCACTGGAACTTCAGAGAGATAAGACTTGCTAT
62 ATAAGATTTGTAGCTTGTAACTTTAGTCTATTCCACTGCAACTTCAGAGAGATAAGACTTGCTAT
* *
8003834 GGTAGATTTAATCTGACC
127 AGTAGATTTAATCCGACC
* * * * * * * * *
8003852 TACTGTAACTTCAGAGCTATAGGACTTGCCGCTTCAGTCTGCTCCACGCAACTTCAGGGAGATAA
1 CACTGCAACTTCAGAGGTATAAGACTTGTCGCTTCAATCTGTTTCACGCAACTTCAAGGAGATAA
* * * *
8003917 GATTTGTAGCTTGTAGCTTTAGTCTATTCCATTGCAACTTCAGGGAGATAAGACTTGTTATAGTA
66 GATTTGTAGCTTGTAACTTTAGTCTATTCCACTGCAACTTCAGAGAGATAAGACTTGCTATAGTA
8003982 GATTTAATCCGACC
131 GATTTAATCCGACC
* *
8003996 CACTGCAACTTCAAAGGTATAAGACTTGTCGCTTCAACCTGTTTCACTGCAACTTCAAGGAGATA
1 CACTGCAACTTCAGAGGTATAAGACTTGTCGCTTCAATCTGTTTCAC-GCAACTTCAAGGAGATA
8004061 AGATTTGTAGCTTGTAACTTTAGTCTATTCCACTGCAACTTCAGAGAGATA
65 AGATTTGTAGCTTGTAACTTTAGTCTATTCCACTGCAACTTCAGAGAGATA
8004112 GGATTTGTAT
Statistics
Matches: 221, Mismatches: 35, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
144 125 0.57
145 94 0.43
146 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (144 bp):
CACTGCAACTTCAGAGGTATAAGACTTGTCGCTTCAATCTGTTTCACGCAACTTCAAGGAGATAA
GATTTGTAGCTTGTAACTTTAGTCTATTCCACTGCAACTTCAGAGAGATAAGACTTGCTATAGTA
GATTTAATCCGACC
Found at i:8004127 original size:95 final size:95
Alignment explanation
Indices: 8003995--8004168 Score: 208
Period size: 95 Copynumber: 1.8 Consensus size: 95
8003985 TTAATCCGAC
* ** *
8003995 CCACTGCAACTTCAAAGGTATAAGACTTGTCGCTTCAA-CCTGTTTCACTGCAACTTCAAGGAGA
1 CCACTGCAACTTCAAAGGTATAAGACTTGTAGCTTCAATCC-ACTCCACTGCAACTTCAAGGAGA
*
8004059 TAAGATTTGTAGCTTGTAACTTTAGTCTATT
65 TAAGATTTATAGCTTGTAACTTTAGTCTATT
* * * * * *
8004090 CCACTGCAACTTCAGAGAG-ATAGGATTTGTATCTTCAATCCACTCCACTGCAACTTTAGGGAGA
1 CCACTGCAACTTCAAAG-GTATAAGACTTGTAGCTTCAATCCACTCCACTGCAACTTCAAGGAGA
*
8004154 TGAGATTTATAGCTT
65 TAAGATTTATAGCTT
8004169 CAACCCGCTC
Statistics
Matches: 65, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
95 62 0.95
96 3 0.05
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (95 bp):
CCACTGCAACTTCAAAGGTATAAGACTTGTAGCTTCAATCCACTCCACTGCAACTTCAAGGAGAT
AAGATTTATAGCTTGTAACTTTAGTCTATT
Found at i:8004139 original size:44 final size:44
Alignment explanation
Indices: 8004089--8004212 Score: 151
Period size: 44 Copynumber: 2.8 Consensus size: 44
8004079 TTTAGTCTAT
* * *
8004089 TCCACTGCAACTTCAGAGAGAT-AGGATTTGTATCTTCAATCCAC
1 TCCACTGCAACTTCAGAGAGATGA-GATTTATAGCTTCAACCCAC
* * *
8004133 TCCACTGCAACTTTAGGGAGATGAGATTTATAGCTTCAACCCGC
1 TCCACTGCAACTTCAGAGAGATGAGATTTATAGCTTCAACCCAC
* * *
8004177 TCCACTGCAACTTCAGAGAAATAAGGTTTATAGCTT
1 TCCACTGCAACTTCAGAGAGATGAGATTTATAGCTT
8004213 TAATCTGCTC
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
44 67 0.99
45 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (44 bp):
TCCACTGCAACTTCAGAGAGATGAGATTTATAGCTTCAACCCAC
Found at i:8007349 original size:45 final size:44
Alignment explanation
Indices: 8007285--8007393 Score: 121
Period size: 44 Copynumber: 2.5 Consensus size: 44
8007275 ATGTTACAAC
* *
8007285 TGCAACTTCAGAGAGATAAGATTTGCTAACTTCAATCTACTCCAT
1 TGCAACTTCAGAGAGATAAGACTTG-TAACTTCAACCTACTCCAT
* * * *
8007330 TGCAACTTTAG-GTAGATAAGACTTGTGACTTCAACCTGCTCTAT
1 TGCAACTTCAGAG-AGATAAGACTTGTAACTTCAACCTACTCCAT
* *
8007374 TGTAACTTCAAAGAGATAAG
1 TGCAACTTCAGAGAGATAAG
8007394 GATTATAGCT
Statistics
Matches: 53, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
44 31 0.58
45 22 0.42
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (44 bp):
TGCAACTTCAGAGAGATAAGACTTGTAACTTCAACCTACTCCAT
Found at i:8014358 original size:45 final size:45
Alignment explanation
Indices: 8014307--8014399 Score: 125
Period size: 45 Copynumber: 2.1 Consensus size: 45
8014297 CCTGAGCTGA
* **
8014307 TGAACAGTAAGCTC-TATTGAGCTGAAACGATAAGCTCTTTCGAGC
1 TGAACAGTAAGCTCATA-CGAGCTGAAACGATAAGCTCTCACGAGC
* *
8014352 TGAACAGTAAGCTCATACGAGTTGAAACGGTAAGCTCTCACGAGC
1 TGAACAGTAAGCTCATACGAGCTGAAACGATAAGCTCTCACGAGC
8014397 TGA
1 TGA
8014400 TATATCGGTA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
45 40 0.95
46 2 0.05
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (45 bp):
TGAACAGTAAGCTCATACGAGCTGAAACGATAAGCTCTCACGAGC
Found at i:8014394 original size:23 final size:22
Alignment explanation
Indices: 8014313--8014414 Score: 89
Period size: 23 Copynumber: 4.4 Consensus size: 22
8014303 CTGATGAACA
*
8014313 GTAAGCTCTATTGAGCTGAAACG
1 GTAAGCTCTA-CGAGCTGAAACG
* * *
8014336 ATAAGCTCTTTCGAGCTG-AACA
1 GTAAGCTC-TACGAGCTGAAACG
*
8014358 GTAAGCTCATACGAGTTGAAACG
1 GTAAGCTC-TACGAGCTGAAACG
8014381 GTAAGCTCTCACGAGCTGATATATCG
1 GTAAGCTCT-ACGAGCTGA-A-A-CG
8014407 GTAAGCTC
1 GTAAGCTC
8014415 ATGTGAGCTG
Statistics
Matches: 63, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
22 18 0.29
23 32 0.51
24 2 0.03
25 1 0.02
26 10 0.16
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (22 bp):
GTAAGCTCTACGAGCTGAAACG
Found at i:8019107 original size:23 final size:23
Alignment explanation
Indices: 8019076--8019165 Score: 92
Period size: 23 Copynumber: 3.9 Consensus size: 23
8019066 ATACACAAAT
* * *
8019076 TCCAACCAAACACACTAGAATGA
1 TCCATCCAAACACACCAGAATAA
* *
8019099 TCCATCCAAACACACCAAAACAA
1 TCCATCCAAACACACCAGAATAA
*
8019122 TCC-TCCCAAACACACTAGAATAA
1 TCCAT-CCAAACACACCAGAATAA
* *
8019145 TCCACCCAAACAAACCAGAAT
1 TCCATCCAAACACACCAGAAT
8019166 GGCACTAAGT
Statistics
Matches: 54, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
22 1 0.02
23 53 0.98
ACGTcount: A:0.48, C:0.36, G:0.04, T:0.12
Consensus pattern (23 bp):
TCCATCCAAACACACCAGAATAA
Found at i:8019740 original size:25 final size:26
Alignment explanation
Indices: 8019708--8019756 Score: 75
Period size: 25 Copynumber: 1.9 Consensus size: 26
8019698 CACTCTCTAT
8019708 TTCTTTTTATGCT-TTGTTT-CTTTTA
1 TTCTTTTTATG-TGTTGTTTACTTTTA
8019733 TTCTTTTTATGTGTTGTTTACTTT
1 TTCTTTTTATGTGTTGTTTACTTT
8019757 ATTAGTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 1 0.05
25 17 0.77
26 4 0.18
ACGTcount: A:0.08, C:0.10, G:0.10, T:0.71
Consensus pattern (26 bp):
TTCTTTTTATGTGTTGTTTACTTTTA
Found at i:8019765 original size:25 final size:25
Alignment explanation
Indices: 8019712--8019767 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
8019702 CTCTATTTCT
**
8019712 TTTTATGCTTTGTTTCTTTTATTCT
1 TTTTATGCTTTGTTTCTTTTATTAG
8019737 TTTTATG-TGTTGTTTAC-TTTATTAG
1 TTTTATGCT-TTGTTT-CTTTTATTAG
8019762 TTTTAT
1 TTTTAT
8019768 AATAATATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 1 0.04
25 25 0.93
26 1 0.04
ACGTcount: A:0.12, C:0.07, G:0.11, T:0.70
Consensus pattern (25 bp):
TTTTATGCTTTGTTTCTTTTATTAG
Found at i:8019949 original size:30 final size:28
Alignment explanation
Indices: 8019906--8019961 Score: 76
Period size: 30 Copynumber: 1.9 Consensus size: 28
8019896 CATAATTTAG
* *
8019906 TTTATTTTTATAATATAATATTTATAATAA
1 TTTAATTTAATAATAT-AT-TTTATAATAA
8019936 TTTAATTTAATAATATATTTTATAAT
1 TTTAATTTAATAATATATTTTATAAT
8019962 TAAATCATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 8 0.33
29 2 0.08
30 14 0.58
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (28 bp):
TTTAATTTAATAATATATTTTATAATAA
Found at i:8020851 original size:28 final size:31
Alignment explanation
Indices: 8020788--8020857 Score: 83
Period size: 28 Copynumber: 2.4 Consensus size: 31
8020778 GTACAAAAAT
8020788 ATCACTAAACTATTGACTTTGTTCTATTTTA
1 ATCACTAAACTATTGACTTTGTTCTATTTTA
* * * *
8020819 GTCACTCAATTATT-ACTTT-TTTTA-TTTA
1 ATCACTAAACTATTGACTTTGTTCTATTTTA
8020847 ATCACTAAACT
1 ATCACTAAACT
8020858 TTTCAAAATT
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
28 12 0.38
29 4 0.12
30 5 0.16
31 11 0.34
ACGTcount: A:0.30, C:0.17, G:0.04, T:0.49
Consensus pattern (31 bp):
ATCACTAAACTATTGACTTTGTTCTATTTTA
Found at i:8023440 original size:13 final size:14
Alignment explanation
Indices: 8023422--8023451 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
8023412 TTGTCTCTAA
8023422 CCCACCACTT-AGG
1 CCCACCACTTCAGG
8023435 CCCACCACTTCAGG
1 CCCACCACTTCAGG
8023449 CCC
1 CCC
8023452 TTCAGTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.20, C:0.53, G:0.13, T:0.13
Consensus pattern (14 bp):
CCCACCACTTCAGG
Found at i:8026548 original size:16 final size:16
Alignment explanation
Indices: 8026527--8026557 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8026517 TTAAATTTTA
*
8026527 ATTAAAAATTTTAAAT
1 ATTAAAAATTATAAAT
8026543 ATTAAAAATTATAAA
1 ATTAAAAATTATAAA
8026558 AAAATGTAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
ATTAAAAATTATAAAT
Found at i:8026551 original size:9 final size:9
Alignment explanation
Indices: 8026527--8026655 Score: 54
Period size: 10 Copynumber: 14.0 Consensus size: 9
8026517 TTAAATTTTA
8026527 ATTAAAAAT
1 ATTAAAAAT
*
8026536 -TT-TAAAT
1 ATTAAAAAT
8026543 ATTAAAAAT
1 ATTAAAAAT
*
8026552 -TATAAAAAA
1 AT-TAAAAAT
*
8026561 ATGTAGAAAT
1 AT-TAAAAAT
*
8026571 GTTAAAAAAT
1 ATT-AAAAAT
8026581 ATATAAAAAT
1 AT-TAAAAAT
*
8026591 -TGTAAAATT
1 AT-TAAAAAT
*
8026600 TTATAAAAAT
1 AT-TAAAAAT
* *
8026610 AGTAAAAAA
1 ATTAAAAAT
8026619 ATTATAAAAT
1 ATTA-AAAAT
*
8026629 ATATAGAAAT
1 AT-TAAAAAT
8026639 A-TAAAAA-
1 ATTAAAAAT
8026646 ATTATAAAAT
1 ATTA-AAAAT
8026656 TTTATAAAGT
Statistics
Matches: 88, Mismatches: 20, Indels: 23
0.67 0.15 0.18
Matches are distributed among these distances:
7 5 0.06
8 12 0.14
9 31 0.35
10 37 0.42
11 3 0.03
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.33
Consensus pattern (9 bp):
ATTAAAAAT
Found at i:8026575 original size:28 final size:27
Alignment explanation
Indices: 8026530--8026655 Score: 101
Period size: 29 Copynumber: 4.5 Consensus size: 27
8026520 AATTTTAATT
* * *
8026530 AAAAATTTTAAATATTAAAAATTATAA
1 AAAAATGTAAAATATTAAAAAATATAA
*
8026557 AAAAATGTAGAAATGTTAAAAAATATATA
1 AAAAATGTA-AAATATTAAAAAATATA-A
* *
8026586 AAAATTGTAAAATTTTATAAAAATAGTAA
1 AAAAATGTAAAATATTA-AAAAATA-TAA
* *
8026615 AAAAATTATAAAATA-TATAGAAATATAA
1 AAAAA-TGTAAAATATTA-AAAAATATAA
* *
8026643 AAAATTATAAAAT
1 AAAAATGTAAAAT
8026656 TTTATAAAGT
Statistics
Matches: 83, Mismatches: 11, Indels: 10
0.80 0.11 0.10
Matches are distributed among these distances:
27 15 0.18
28 29 0.35
29 30 0.36
30 9 0.11
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (27 bp):
AAAAATGTAAAATATTAAAAAATATAA
Found at i:8026578 original size:29 final size:28
Alignment explanation
Indices: 8026545--8026663 Score: 107
Period size: 29 Copynumber: 4.1 Consensus size: 28
8026535 TTTTAAATAT
8026545 TAAAAATTATAAAAAAATGTAGAAATGTTA
1 TAAAAA-TATAAAAAAATGTA-AAATGTTA
* *
8026575 -AAAAATATATAAAAATTGTAAAATTTTA
1 TAAAAATATA-AAAAAATGTAAAATGTTA
* *
8026603 TAAAAATAGTAAAAAAATTATAAAAT-ATA
1 TAAAAATA-TAAAAAAA-TGTAAAATGTTA
* * * *
8026632 TAGAAATATAAAAAATTATAAAATTTTA
1 TAAAAATATAAAAAAATGTAAAATGTTA
8026660 TAAA
1 TAAA
8026664 GTCGCAAGAA
Statistics
Matches: 75, Mismatches: 9, Indels: 12
0.78 0.09 0.12
Matches are distributed among these distances:
27 8 0.11
28 23 0.31
29 35 0.47
30 9 0.12
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (28 bp):
TAAAAATATAAAAAAATGTAAAATGTTA
Found at i:8026589 original size:11 final size:10
Alignment explanation
Indices: 8026539--8026654 Score: 77
Period size: 10 Copynumber: 12.2 Consensus size: 10
8026529 TAAAAATTTT
8026539 AAATAT-TAA
1 AAATATATAA
8026548 AAAT-TATAA
1 AAATATATAA
* * *
8026557 AAAAATGTAG
1 AAATATATAA
*
8026567 AAATGT-TAAA
1 AAATATAT-AA
8026577 AAATATATAA
1 AAATATATAA
*
8026587 AAAT-TGTAA
1 AAATATATAA
* *
8026596 AATTTTATAA
1 AAATATATAA
*
8026606 AAATAGTAAAA
1 AAATA-TATAA
8026617 AAAT-TAT-A
1 AAATATATAA
*
8026625 AAATATATAG
1 AAATATATAA
8026635 AAATATA-AA
1 AAATATATAA
8026644 AAAT-TATAA
1 AAATATATAA
8026653 AA
1 AA
8026655 TTTTATAAAG
Statistics
Matches: 82, Mismatches: 16, Indels: 18
0.71 0.14 0.16
Matches are distributed among these distances:
8 8 0.10
9 32 0.39
10 33 0.40
11 9 0.11
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (10 bp):
AAATATATAA
Found at i:8026696 original size:58 final size:57
Alignment explanation
Indices: 8026567--8026701 Score: 157
Period size: 58 Copynumber: 2.3 Consensus size: 57
8026557 AAAAATGTAG
* *
8026567 AAATGTTAAA-AAATATATAAAAATTGTAAAATTTTATAAAAATAGTAAAAAAATTATA
1 AAATG-TAAAGAAATATA-AAAAATTATAAAATTTTATAAAAATAGCAAAAAAATTATA
* * * * *
8026625 AAATATATAGAAATATAAAAAATTATAAAATTTTAT-AAAGTCGCAAGAAAATTATACA
1 AAATGTAAAGAAATATAAAAAATTATAAAATTTTATAAAAATAGCAAAAAAATTAT--A
8026683 AAATGTAAAGAAATATAAA
1 AAATGTAAAGAAATATAAA
8026702 TTTTGTAAAT
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
56 15 0.23
57 21 0.32
58 29 0.45
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.30
Consensus pattern (57 bp):
AAATGTAAAGAAATATAAAAAATTATAAAATTTTATAAAAATAGCAAAAAAATTATA
Found at i:8027074 original size:89 final size:89
Alignment explanation
Indices: 8026970--8027166 Score: 231
Period size: 89 Copynumber: 2.2 Consensus size: 89
8026960 TAAGAGCGGA
*** *
8026970 GGCTTAATTGTTTTTTTTAT-ATTTTATTTTCAGGGTCTTTTTTATGCATTTTAAAAGTTCAAAT
1 GGCTTAATTGTTTTTTTTATGA-AGAAGTTTCAGGGTCTTTTTTATGCATTTTAAAAGTTCAAAT
8027034 ACCCAATTGAGTG-GAAAAAAATA-GG
65 -CCCAATTGAGTGCGAAAAAAA-AGGG
* * * *
8027059 GGCTTAATT-TCTTTTTTTTTGAAGAAGTTTGAGGGTTTTTTTTATGCATTTTAAAAGTTCAAGT
1 GGCTTAATTGT-TTTTTTTATGAAGAAGTTTCAGGGTCTTTTTTATGCATTTTAAAAGTTCAAAT
* *
8027123 GCTAATTGAGTGCGAAAAAAAAGGG
65 CCCAATTGAGTGCGAAAAAAAAGGG
8027148 GGCTTAATTGTTATTTTTT
1 GGCTTAATTGTT-TTTTTT
8027167 TAAAGTTTGA
Statistics
Matches: 92, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
88 12 0.13
89 72 0.78
90 8 0.09
ACGTcount: A:0.28, C:0.08, G:0.19, T:0.45
Consensus pattern (89 bp):
GGCTTAATTGTTTTTTTTATGAAGAAGTTTCAGGGTCTTTTTTATGCATTTTAAAAGTTCAAATC
CCAATTGAGTGCGAAAAAAAAGGG
Found at i:8027167 original size:89 final size:89
Alignment explanation
Indices: 8027001--8027167 Score: 241
Period size: 89 Copynumber: 1.9 Consensus size: 89
8026991 TTTTATTTTC
8027001 AGGGTCTTTTTTATGCATTTTAAAAGTTCAAATACCCAATTGAGTGGAAAAAAATAGGGGCTTAA
1 AGGGTCTTTTTTATGCATTTTAAAAGTTCAAATACCCAATTGAGTGGAAAAAAATAGGGGCTTAA
*
8027066 TTTCTTTTTTTTTGAAGAAGTTTG
66 TTTCTATTTTTTTGAAGAAGTTTG
* * * *
8027090 AGGGTTTTTTTTATGCATTTTAAAAGTTCAAGT-GCTAATTGAGTGCGAAAAAAA-AGGGGGCTT
1 AGGGTCTTTTTTATGCATTTTAAAAGTTCAAATACCCAATTGAGTG-GAAAAAAATA-GGGGCTT
8027153 AATTGT-TATTTTTTT
64 AATT-TCTATTTTTTT
8027168 AAAGTTTGAG
Statistics
Matches: 70, Mismatches: 5, Indels: 6
0.86 0.06 0.07
Matches are distributed among these distances:
88 11 0.16
89 58 0.83
90 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (89 bp):
AGGGTCTTTTTTATGCATTTTAAAAGTTCAAATACCCAATTGAGTGGAAAAAAATAGGGGCTTAA
TTTCTATTTTTTTGAAGAAGTTTG
Found at i:8029182 original size:468 final size:468
Alignment explanation
Indices: 8028401--8029289 Score: 1503
Period size: 468 Copynumber: 1.9 Consensus size: 468
8028391 AACTTTTTGC
8028401 CAATTTTATCAAGCAATTGAAACTTGTGAGAATTCAAATCTCCTTGTTCTCTTTGGGACTGATCT
1 CAATTTTATCAAGCAATTGAAACTTGTGAGAATTCAAATCTCCTTGTTCTCTTTGGGACTGATCT
* * *
8028466 GACTTATCAAGATAGACTTGTGGCGTCATTTCCTTCCTTTGTTATATGAACTTATCACTTCAAGT
66 GAATTATCAAGATAGACTTGTGGCGTCATTTCCTTCCTTTGCTATACGAACTTATCACTTCAAGT
* ** *
8028531 GTGGCATTCGTTTTACCTTTGGTTCCTATCTCGTTAGATAGTGGGTCAAGGTTTATTTGTTGTCT
131 GTGGCATTCGTTTTACCTTCGGTTCCTATCTCGTTAGATAGCCGATCAAGGTTTATTTGTTGTCT
* *
8028596 TCTAAATCAAATTATCCAACTAAGTGCTTTTAAGACTTAGGTCAACAATCATCTATATTGTTGGT
196 TCTAAATCAAATTATCCAACTAAGTGCTTTTAAGACTTAGGTCAACAATCATCCATACTGTTGGT
* *
8028661 TCATCCTTTGCTTTAGCCAAACCTATCCATCCATTTCCTAAACATTCTTTGAACCTCTGTTTGAG
261 TCAACCTTTGCCTTAGCCAAACCTATCCATCCATTTCCTAAACATTCTTTGAACCTCTGTTTGAG
*
8028726 CCTATCTTCTA-CTCGTTTTCAGCCTTTCTTGAAACGAAGCACAACTTACTCAATTTCTCAATCG
326 CCTATCTTCTACCT-GTTTTCAGCCTTTCTTAAAACGAAGCACAACTTACTCAATTTCTCAATCG
*
8028790 GGCACACACATACGACTCAAAACTACATCAACCGAGTTCGTATCAAGTGTTATGTTTCAAATACT
390 GGCAAACACATACGACTCAAAACTACATCAACCGAGTTCGTATCAAGTGTTATGTTTCAAATACT
8028855 CATATTTTTTTCTT
455 CATATTTTTTTCTT
8028869 CAATTTTATCAAGCAATTGAAACTTGTGAGAATTCAAATCTCCTTGTTCTCTTTGGGACTGATCT
1 CAATTTTATCAAGCAATTGAAACTTGTGAGAATTCAAATCTCCTTGTTCTCTTTGGGACTGATCT
* * *
8028934 GAATTATCAAGTTAGGCTTGTGGCGTCATTTCCTTCCTTTGCTATCCGAACTTATCACTTCAAGT
66 GAATTATCAAGATAGACTTGTGGCGTCATTTCCTTCCTTTGCTATACGAACTTATCACTTCAAGT
* *
8028999 GTGGCGTTCGTTTTACCTTCGGTTCCTATCTCGTTAGATAGCCGATCAATGTTTATTTGTTGT-T
131 GTGGCATTCGTTTTACCTTCGGTTCCTATCTCGTTAGATAGCCGATCAAGGTTTATTTGTTGTCT
* *
8029063 TCCTAAATTAAATTATCCAACTAAGTGCTTTTAAGACTTGGGTCAACAATCATCCATACTGTTGG
196 T-CTAAATCAAATTATCCAACTAAGTGCTTTTAAGACTTAGGTCAACAATCATCCATACTGTTGG
* *
8029128 TTCAACCTTTGCCTTAGCCAAACCTATCTATCCATTTCTTAAACATTCTTTGAACCTCTGTTTGA
260 TTCAACCTTTGCCTTAGCCAAACCTATCCATCCATTTCCTAAACATTCTTTGAACCTCTGTTTGA
** * *
8029193 GCCTATCTTCTACCTGTTTTCAGCCTTTCTTAAAACGACTCACAACTTACTCAATTTCTCGATTG
325 GCCTATCTTCTACCTGTTTTCAGCCTTTCTTAAAACGAAGCACAACTTACTCAATTTCTCAATCG
*
8029258 GGCAAACACATACGACTCGAAACTACATCAAC
390 GGCAAACACATACGACTCAAAACTACATCAAC
8029290 TGATTTCATA
Statistics
Matches: 392, Mismatches: 27, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
467 2 0.01
468 388 0.99
469 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.38
Consensus pattern (468 bp):
CAATTTTATCAAGCAATTGAAACTTGTGAGAATTCAAATCTCCTTGTTCTCTTTGGGACTGATCT
GAATTATCAAGATAGACTTGTGGCGTCATTTCCTTCCTTTGCTATACGAACTTATCACTTCAAGT
GTGGCATTCGTTTTACCTTCGGTTCCTATCTCGTTAGATAGCCGATCAAGGTTTATTTGTTGTCT
TCTAAATCAAATTATCCAACTAAGTGCTTTTAAGACTTAGGTCAACAATCATCCATACTGTTGGT
TCAACCTTTGCCTTAGCCAAACCTATCCATCCATTTCCTAAACATTCTTTGAACCTCTGTTTGAG
CCTATCTTCTACCTGTTTTCAGCCTTTCTTAAAACGAAGCACAACTTACTCAATTTCTCAATCGG
GCAAACACATACGACTCAAAACTACATCAACCGAGTTCGTATCAAGTGTTATGTTTCAAATACTC
ATATTTTTTTCTT
Found at i:8029409 original size:23 final size:21
Alignment explanation
Indices: 8029371--8029413 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
8029361 GTGATTTTAT
*
8029371 AAAAAATATTCGAAAAAAATA
1 AAAAAAAATTCGAAAAAAATA
8029392 AAAAAAAATTCGTCAAAAAAAT
1 AAAAAAAATTCG--AAAAAAAT
8029414 TTCAACATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 11 0.58
23 8 0.42
ACGTcount: A:0.70, C:0.07, G:0.05, T:0.19
Consensus pattern (21 bp):
AAAAAAAATTCGAAAAAAATA
Found at i:8036775 original size:38 final size:38
Alignment explanation
Indices: 8036733--8036810 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
8036723 CTAATTTCAC
8036733 ATCAACAACTATTAAATCATGATATTCCTTCAATGACA
1 ATCAACAACTATTAAATCATGATATTCCTTCAATGACA
*
8036771 ATCAACAACTATTAAATCATGATATTCCTTTAATGACA
1 ATCAACAACTATTAAATCATGATATTCCTTCAATGACA
8036809 AT
1 AT
8036811 GTTAAAAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.42, C:0.19, G:0.05, T:0.33
Consensus pattern (38 bp):
ATCAACAACTATTAAATCATGATATTCCTTCAATGACA
Found at i:8037419 original size:18 final size:18
Alignment explanation
Indices: 8037387--8037421 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8037377 AGATTCGAGT
**
8037387 TTGATATTTTGATTTAAA
1 TTGATATTTAAATTTAAA
8037405 TTGATATTTAAATTTAA
1 TTGATATTTAAATTTAA
8037422 TTTTTTATCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.00, G:0.09, T:0.54
Consensus pattern (18 bp):
TTGATATTTAAATTTAAA
Found at i:8038841 original size:20 final size:19
Alignment explanation
Indices: 8038818--8038888 Score: 61
Period size: 21 Copynumber: 3.4 Consensus size: 19
8038808 TTTTATTAAT
8038818 TTAATATTAAAGTGATTATA
1 TTAATATTAAAGT-ATTATA
*
8038838 TTAATATTAAATTTAATCTAATA
1 TTAATATTAAA-GT-AT-T-ATA
*
8038861 TTTATATTGATAAGTATTATA
1 TTAATATT-A-AAGTATTATA
8038882 TTAATAT
1 TTAATAT
8038889 AATATTAAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
20 11 0.27
21 12 0.29
22 2 0.05
23 12 0.29
24 2 0.05
25 2 0.05
ACGTcount: A:0.44, C:0.01, G:0.06, T:0.49
Consensus pattern (19 bp):
TTAATATTAAAGTATTATA
Found at i:8040532 original size:46 final size:50
Alignment explanation
Indices: 8040482--8040589 Score: 125
Period size: 53 Copynumber: 2.2 Consensus size: 50
8040472 TAGCCCTGCC
* *
8040482 ATGGTCTTACACG-GATCACA-TA-ACAT-ACCGATGCCATATCCCAAAT
1 ATGGTCTTACACGAAATCACATTACACATCACCGATGCCATAGCCCAAAT
* *
8040528 ATGGTCTTATACGAAATCACATTATCACATCACACCGATGCCATAGCCCAACT
1 ATGGTCTTACACGAAATCACATTA-CACAT--CACCGATGCCATAGCCCAAAT
8040581 ATGGTCTTA
1 ATGGTCTTA
8040590 TATGGAAGTA
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
46 12 0.24
47 6 0.12
48 2 0.04
50 4 0.08
53 27 0.53
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (50 bp):
ATGGTCTTACACGAAATCACATTACACATCACCGATGCCATAGCCCAAAT
Found at i:8048198 original size:35 final size:35
Alignment explanation
Indices: 8048128--8048493 Score: 468
Period size: 35 Copynumber: 10.5 Consensus size: 35
8048118 GGCAAAGTGC
*
8048128 GAAATGTAGGTATGGTAT-AACCATACTGAGTTGT
1 GAAATGTAGGTATGGTATCATCCATACTGAGTTGT
* * *
8048162 GAAATGTAGGTATGGTGTCGTCCATACTGAGCTGT
1 GAAATGTAGGTATGGTATCATCCATACTGAGTTGT
* * * * * *
8048197 GATACGTAGGTATGGTATTAACCGTACTGAGATGT
1 GAAATGTAGGTATGGTATCATCCATACTGAGTTGT
* *
8048232 GAAACGTAGGTATGGTATCATCCATACCGAGTTGT
1 GAAATGTAGGTATGGTATCATCCATACTGAGTTGT
*
8048267 GAAATGTAGGTATGGTATTATCCATACTGAGTTGT
1 GAAATGTAGGTATGGTATCATCCATACTGAGTTGT
* *
8048302 GAAACGTAAGTATGGTATCATCCATACTGAGTTGT
1 GAAATGTAGGTATGGTATCATCCATACTGAGTTGT
* * *
8048337 GAAACGTAGGTATGGTATCATCCATACAGAGTTGA
1 GAAATGTAGGTATGGTATCATCCATACTGAGTTGT
* *
8048372 GAAAT-TAGGTATGGTATCATCCATACCGAGTTGA
1 GAAATGTAGGTATGGTATCATCCATACTGAGTTGT
* **
8048406 GAAATGTAGGTATGGTATTATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATCATCCATACTGAGTTGT
* * *
8048441 GAAATGTAGGTATGGCAT-TTCCCATACCGAGTTGT
1 GAAATGTAGGTATGGTATCAT-CCATACTGAGTTGT
8048476 GAAATGTAGGTATGGTAT
1 GAAATGTAGGTATGGTAT
8048494 TTCAATGAGG
Statistics
Matches: 291, Mismatches: 38, Indels: 5
0.87 0.11 0.01
Matches are distributed among these distances:
34 51 0.18
35 240 0.82
ACGTcount: A:0.30, C:0.12, G:0.26, T:0.31
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATCATCCATACTGAGTTGT
Found at i:8048415 original size:139 final size:140
Alignment explanation
Indices: 8048128--8048493 Score: 513
Period size: 139 Copynumber: 2.6 Consensus size: 140
8048118 GGCAAAGTGC
* * *
8048128 GAAATGTAGGTATGGTA-TAACCATACTGAGTTGTGAAATGTAGGTATGGTGTCGTCCATACTGA
1 GAAATGTAGGTATGGTATTATCCATACTGAGTTGTGAAATGTAGGTATGGTATCATCCATACTGA
* * * * * *
8048192 GCTGTGATACGTAGGTATGGTATTAACCGTACTGAGATGTGAAACGTAGGTATGGTATCATCCAT
66 GTTGTGAAACGTAGGTATGGTATCAACCATACAGAGATGAGAAACGTAGGTATGGTATCATCCAT
*
8048257 ACCGAGTTGT
131 ACCGAGTTGA
* *
8048267 GAAATGTAGGTATGGTATTATCCATACTGAGTTGTGAAACGTAAGTATGGTATCATCCATACTGA
1 GAAATGTAGGTATGGTATTATCCATACTGAGTTGTGAAATGTAGGTATGGTATCATCCATACTGA
* * *
8048332 GTTGTGAAACGTAGGTATGGTATCATCCATACAGAGTTGAGAAA-TTAGGTATGGTATCATCCAT
66 GTTGTGAAACGTAGGTATGGTATCAACCATACAGAGATGAGAAACGTAGGTATGGTATCATCCAT
8048396 ACCGAGTTGA
131 ACCGAGTTGA
** * * *
8048406 GAAATGTAGGTATGGTATTATCCATACTGAGTTAAGAAATGTAGGTATGGCAT-TTCCCATACCG
1 GAAATGTAGGTATGGTATTATCCATACTGAGTTGTGAAATGTAGGTATGGTATCAT-CCATACTG
*
8048470 AGTTGTGAAATGTAGGTATGGTAT
65 AGTTGTGAAACGTAGGTATGGTAT
8048494 TTCAATGAGG
Statistics
Matches: 202, Mismatches: 23, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
138 1 0.00
139 123 0.61
140 78 0.39
ACGTcount: A:0.30, C:0.12, G:0.26, T:0.31
Consensus pattern (140 bp):
GAAATGTAGGTATGGTATTATCCATACTGAGTTGTGAAATGTAGGTATGGTATCATCCATACTGA
GTTGTGAAACGTAGGTATGGTATCAACCATACAGAGATGAGAAACGTAGGTATGGTATCATCCAT
ACCGAGTTGA
Found at i:8050943 original size:46 final size:50
Alignment explanation
Indices: 8050893--8051000 Score: 125
Period size: 53 Copynumber: 2.2 Consensus size: 50
8050883 TAGCCCTGCC
* *
8050893 ATGGTCTTACACG-GATCACA-TA-ACAT-ACCGATGCCATATCCCAAAT
1 ATGGTCTTACACGAAATCACATTACACATCACCGATGCCATAGCCCAAAT
* *
8050939 ATGGTCTTATACGAAATCACATTATCACATCACACCGATGCCATAGCCCAACT
1 ATGGTCTTACACGAAATCACATTA-CACAT--CACCGATGCCATAGCCCAAAT
8050992 ATGGTCTTA
1 ATGGTCTTA
8051001 TATGGAAGTA
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
46 12 0.24
47 6 0.12
48 2 0.04
50 4 0.08
53 27 0.53
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (50 bp):
ATGGTCTTACACGAAATCACATTACACATCACCGATGCCATAGCCCAAAT
Found at i:8052916 original size:49 final size:49
Alignment explanation
Indices: 8052800--8052940 Score: 115
Period size: 49 Copynumber: 2.9 Consensus size: 49
8052790 CATGAAACTG
* * * * *
8052800 GAACTCGAGACCGTATAACCACCGTCAATTGGGGGCCTAAGTTATATTT
1 GAACTCGTGACTGTATAACCACCGTCAACTGGGAGCCCAAGTTATATTT
** ** *
8052849 GAAC-CTGTGACTACATAACCATTGTTAACTGGGAGCCCAAGTTATACTTT
1 GAACTC-GTGACTGTATAACCACCGTCAACTGGGAGCCCAAGTTATA-TTT
* * * * *
8052899 -AACTCGTGACTGTATAACTACCGTGAAATGAGATCCCAAGTT
1 GAACTCGTGACTGTATAACCACCGTCAACTGGGAGCCCAAGTT
8052941 GCAATGTGAC
Statistics
Matches: 70, Mismatches: 19, Indels: 6
0.74 0.20 0.06
Matches are distributed among these distances:
48 1 0.01
49 65 0.93
50 4 0.06
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (49 bp):
GAACTCGTGACTGTATAACCACCGTCAACTGGGAGCCCAAGTTATATTT
Found at i:8055389 original size:23 final size:22
Alignment explanation
Indices: 8055354--8055399 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
8055344 CCGAACGTGG
* *
8055354 TTCGGGAAGTGGACATCTCGATT
1 TTCGCGAAATGGACAT-TCGATT
*
8055377 TTCGCGAAATGGAGATTCGATT
1 TTCGCGAAATGGACATTCGATT
8055399 T
1 T
8055400 CTTCGAACTG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.33
Consensus pattern (22 bp):
TTCGCGAAATGGACATTCGATT
Found at i:8057785 original size:25 final size:25
Alignment explanation
Indices: 8057750--8057799 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
8057740 AAATATAATT
8057750 AAATAAGTAATATAATTTTCTTCTC
1 AAATAAGTAATATAATTTTCTTCTC
*
8057775 AAATAATTAATATAATTTTCTTCTC
1 AAATAAGTAATATAATTTTCTTCTC
8057800 TTGAATTTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.40, C:0.12, G:0.02, T:0.46
Consensus pattern (25 bp):
AAATAAGTAATATAATTTTCTTCTC
Found at i:8058140 original size:29 final size:30
Alignment explanation
Indices: 8058108--8058171 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 30
8058098 TGTTTATCGG
*
8058108 TAAAATTTTACTTTAA-TTTTTAAAAATAA
1 TAAAATTTTAATTTAATTTTTTAAAAATAA
*
8058137 TAAAATTTTAATTTAATTTTTTAAAAATTA
1 TAAAATTTTAATTTAATTTTTTAAAAATAA
8058167 TAAAA
1 TAAAA
8058172 GTATAAATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 15 0.47
30 17 0.53
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (30 bp):
TAAAATTTTAATTTAATTTTTTAAAAATAA
Found at i:8058181 original size:15 final size:17
Alignment explanation
Indices: 8058160--8058200 Score: 59
Period size: 15 Copynumber: 2.5 Consensus size: 17
8058150 TAATTTTTTA
*
8058160 AAAATTATAAAAGT-AT
1 AAAATTATAAAAATAAT
8058176 -AAATTATAAAAATAAT
1 AAAATTATAAAAATAAT
8058192 AAAATTATA
1 AAAATTATA
8058201 TTTTTACTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 12 0.55
16 2 0.09
17 8 0.36
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (17 bp):
AAAATTATAAAAATAAT
Found at i:8059347 original size:24 final size:23
Alignment explanation
Indices: 8059306--8059350 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
8059296 TTATTAAGAA
8059306 ATATTTATTTTAATATTTTTAAT
1 ATATTTATTTTAATATTTTTAAT
8059329 ATATTATATTTTTAA-ATTTTTA
1 ATATT-TA-TTTTAATATTTTTA
8059351 TTTTTAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 5 0.25
24 9 0.45
25 6 0.30
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (23 bp):
ATATTTATTTTAATATTTTTAAT
Found at i:8059354 original size:14 final size:16
Alignment explanation
Indices: 8059318--8059361 Score: 65
Period size: 14 Copynumber: 2.9 Consensus size: 16
8059308 ATTTATTTTA
8059318 ATATTTTTAATATATT
1 ATATTTTTAATATATT
8059334 ATATTTTTAA-AT-TT
1 ATATTTTTAATATATT
*
8059348 TTATTTTTAATATA
1 ATATTTTTAATATA
8059362 AAAATGTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
14 11 0.44
15 4 0.16
16 10 0.40
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
ATATTTTTAATATATT
Found at i:8065752 original size:15 final size:15
Alignment explanation
Indices: 8065732--8065772 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
8065722 AATTGGACAG
8065732 TGGATACATCACTAA
1 TGGATACATCACTAA
*
8065747 TGGATACATCACTAG
1 TGGATACATCACTAA
8065762 TGGATACATCA
1 TGGATACATCA
8065773 TTGTTTAGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.27
Consensus pattern (15 bp):
TGGATACATCACTAA
Found at i:8070987 original size:357 final size:358
Alignment explanation
Indices: 8070325--8071731 Score: 2424
Period size: 357 Copynumber: 3.9 Consensus size: 358
8070315 AAGAAATGAT
*
8070325 ATAACATACAACTTTTACCTTATGAGGTTGAAACGGCAGTTCATCTCAGTTCACATTCCGCATCA
1 ATAACATACAACTTTTACCTTATGAGGTCGAAACGGCAGTTCATCTCAGTTCACATTCCGCATCA
8070390 CATAAGAACAACAATCGGGGACCCATGACCCATGACCACGAGTGCAGTTTGAAAGACAGTCTAGC
66 CATAAGAACAACAATCGGGGACCCATGA-CCAT------GAGTGCAGTTTGAAAGACAGTCTAGC
*
8070455 AAATCAGGTAACTATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTGATTGATC
124 AAATCAGGTAACTATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTAATTGATC
* * *
8070520 TATGTCCCTTTCAAGAGAGATTCAAATGAAAACATTCAAATATCAACCAACTAGTAATCAAGAAA
189 TATGTCCCTATCAAGAGAGATTCAAAAGACAACATTCAAATATCAACCAACTAGTAATCAAGAAA
*
8070585 TAACCAACAATGATTTCAGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGAA
254 TAACCAACAATGATTTCGGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGAA
8070650 CAGGGAACTAAAAGC-AATGCCAAACCATGTTTAATTGCA
319 CAGGGAACTAAAAGCAAATGCCAAACCATGTTTAATTGCA
*
8070689 ATAACATACAACTTTTACCTTATGAGGTCGAAACGGCAGTTCATCTCAGTTTACATTCCGCATCA
1 ATAACATACAACTTTTACCTTATGAGGTCGAAACGGCAGTTCATCTCAGTTCACATTCCGCATCA
* *
8070754 CATAAGAGCAACAATCGGGGACCCATGACCATGAGTGCAGTTTGAAAGACAGGCTAGCAAATCAG
66 CATAAGAACAACAATCGGGGACCCATGACCATGAGTGCAGTTTGAAAGACAGTCTAGCAAATCAG
* *
8070819 GTAACGATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTAATTGGTCTATGTCC
131 GTAACTATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTAATTGATCTATGTCC
8070884 CTATCAAGAGAGATTCAAAAGACAACATTCAAATATCAACCAACTAGTAATCAAGAAATAACCAA
196 CTATCAAGAGAGATTCAAAAGACAACATTCAAATATCAACCAACTAGTAATCAAGAAATAACCAA
* *
8070949 CAATGGTTTCGGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGCAAGCTCTGAACAGGGAA
261 CAATGATTTCGGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGAACAGGGAA
* * *
8071014 CTAAAAGCAAATACCAAACCATGTTCAATTGCT
326 CTAAAAGCAAATGCCAAACCATGTTTAATTGCA
*
8071047 ATAACATACAACTTTTACCTCATGAGGTCGAAACGGCAGTTCATCTCAGTTCACATTCCGCATCA
1 ATAACATACAACTTTTACCTTATGAGGTCGAAACGGCAGTTCATCTCAGTTCACATTCCGCATCA
* *
8071112 CATAAGGACAACAATCGGGGACCCATGACCA-GAGTGCAGTTTGAAAGATAGTCTAGCAAATCAG
66 CATAAGAACAACAATCGGGGACCCATGACCATGAGTGCAGTTTGAAAGACAGTCTAGCAAATCAG
*
8071176 ATAACTATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTAATTGATCTATGTCC
131 GTAACTATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTAATTGATCTATGTCC
* * * *
8071241 CGATCAAGAGCGATTCAAATGACAACATTCAAATATCAACCAACTAGTAATCACGAAATAACCAA
196 CTATCAAGAGAGATTCAAAAGACAACATTCAAATATCAACCAACTAGTAATCAAGAAATAACCAA
8071306 CAATGATTTCGGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGAACAGGGAA
261 CAATGATTTCGGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGAACAGGGAA
8071371 CTAAAAGCAAATGCCAAACCATGTTTAATTGCA
326 CTAAAAGCAAATGCCAAACCATGTTTAATTGCA
* *
8071404 ATAACATACAACTTTTACCTTATGAAGTCAAAACGGCAGTTCATCTCAGTTCACATTCCGCATCA
1 ATAACATACAACTTTTACCTTATGAGGTCGAAACGGCAGTTCATCTCAGTTCACATTCCGCATCA
* ** *
8071469 CAGAAGAACAACAATCGGGGACCCATGACTGTGGGTGCAGTTTG-AAGACAGTCTAGCAAATCAG
66 CATAAGAACAACAATCGGGGACCCATGACCATGAGTGCAGTTTGAAAGACAGTCTAGCAAATCAG
8071533 GTAACTATGTTACAAATTATATCAACAGCATAACAAATTTTCTTGATGACTAATTGATCTATGTC
131 GTAACTATGTTACAAATTATATCAACAGCATAAC-AATTTTCTTGATGACTAATTGATCTATGTC
*
8071598 CCTACCAAGAGAGATTCAAAAGACAACATTCAAATATCAACCAACTAGTAATCAAGAAATAACCA
195 CCTATCAAGAGAGATTCAAAAGACAACATTCAAATATCAACCAACTAGTAATCAAGAAATAACCA
* *
8071663 ACAATGGTTTCGGAACATTATTTCCAGTGGCAAATGTGATTTTGATTGTAAGCTCTGAACAGGGA
260 ACAATGATTTCGGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGAACAGGGA
8071728 ACTA
325 ACTA
8071732 TTGTGATTGT
Statistics
Matches: 989, Mismatches: 51, Indels: 12
0.94 0.05 0.01
Matches are distributed among these distances:
357 614 0.62
358 281 0.28
363 4 0.00
364 90 0.09
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.26
Consensus pattern (358 bp):
ATAACATACAACTTTTACCTTATGAGGTCGAAACGGCAGTTCATCTCAGTTCACATTCCGCATCA
CATAAGAACAACAATCGGGGACCCATGACCATGAGTGCAGTTTGAAAGACAGTCTAGCAAATCAG
GTAACTATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTAATTGATCTATGTCC
CTATCAAGAGAGATTCAAAAGACAACATTCAAATATCAACCAACTAGTAATCAAGAAATAACCAA
CAATGATTTCGGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGAACAGGGAA
CTAAAAGCAAATGCCAAACCATGTTTAATTGCA
Found at i:8071730 original size:715 final size:717
Alignment explanation
Indices: 8070324--8071731 Score: 2491
Period size: 715 Copynumber: 2.0 Consensus size: 717
8070314 AAAGAAATGA
* *
8070324 TATAACATACAACTTTTACCTTATGAGGTTGAAACGGCAGTTCATCTCAGTTCACATTCCGCATC
1 TATAACATACAACTTTTACCTCATGAGGTCGAAACGGCAGTTCATCTCAGTTCACATTCCGCATC
8070389 ACATAAGAACAACAATCGGGGACCCATGACCCATGACCACGAGTGCAGTTTGAAAGACAGTCTAG
66 ACATAAGAACAACAATCGGGG---C--GACCCATGACCACGAGTGCAGTTTGAAAGACAGTCTAG
* *
8070454 CAAATCAGGTAACTATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTGATTGAT
126 CAAATCAGATAACTATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTAATTGAT
**
8070519 CTATGTCCCTTTCAAGAGAGATTCAAATGAAAACATTCAAATATCAACCAACTAGTAATCAAGAA
191 CTATGTCCCGATCAAGAGAGATTCAAATGAAAACATTCAAATATCAACCAACTAGTAATCAAGAA
8070584 ATAACCAACAATGATTTCAGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGA
256 ATAACCAACAATGATTTCAGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGA
8070649 ACAGGGAACTAAAAGCAATGCCAAACCATGTTTAATTGCAATAACATACAACTTTTACCTTATGA
321 ACAGGGAACTAAAAGCAATGCCAAACCATGTTTAATTGCAATAACATACAACTTTTACCTTATGA
* * * * *
8070714 GGTCGAAACGGCAGTTCATCTCAGTTTACATTCCGCATCACATAAGAGCAACAATCGGGGACCCA
386 AGTCAAAACGGCAGTTCATCTCAGTTCACATTCCGCATCACAGAAGAACAACAATCGGGGACCCA
8070779 TGACCATGAGTGCAGTTTGAAAGACAGGCTAGCAAATCAGGTAACGATGTTACAAATTATATCAA
451 TGACCATGAGTGCAGTTTGAAAGACAGGCTAGCAAATCAGGTAACGATGTTACAAATTATATCAA
* *
8070844 CAGCATAACAATTTTCTTGATGACTAATTGGTCTATGTCCCTATCAAGAGAGATTCAAAAGACAA
516 CAGCATAACAATTTTCTTGATGACTAATTGATCTATGTCCCTACCAAGAGAGATTCAAAAGACAA
8070909 CATTCAAATATCAACCAACTAGTAATCAAGAAATAACCAACAATGGTTTCGGAACATTATTTCCA
581 CATTCAAATATCAACCAACTAGTAATCAAGAAATAACCAACAATGGTTTCGGAACATTATTTCCA
8070974 GTGGCAAATGTGATTGTGATTGCAAGCTCTGAACAGGGAACTAAAAGCAAATACCAAACCATGTT
646 GTGGCAAATGTGATTGTGATTGCAAGCTCTGAACAGGGAACTAAAAGCAAATACCAAACCATGTT
8071039 CAATTGC
711 CAATTGC
8071046 TATAACATACAACTTTTACCTCATGAGGTCGAAACGGCAGTTCATCTCAGTTCACATTCCGCATC
1 TATAACATACAACTTTTACCTCATGAGGTCGAAACGGCAGTTCATCTCAGTTCACATTCCGCATC
* *
8071111 ACATAAGGACAACAATC-GGG-GACCCATGACCA-GAGTGCAGTTTGAAAGATAGTCTAGCAAAT
66 ACATAAGAACAACAATCGGGGCGACCCATGACCACGAGTGCAGTTTGAAAGACAGTCTAGCAAAT
8071173 CAGATAACTATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTAATTGATCTATG
131 CAGATAACTATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTAATTGATCTATG
* * *
8071238 TCCCGATCAAGAGCGATTCAAATGACAACATTCAAATATCAACCAACTAGTAATCACGAAATAAC
196 TCCCGATCAAGAGAGATTCAAATGAAAACATTCAAATATCAACCAACTAGTAATCAAGAAATAAC
*
8071303 CAACAATGATTTCGGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGAACAGG
261 CAACAATGATTTCAGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGAACAGG
8071368 GAACTAAAAGCAAATGCCAAACCATGTTTAATTGCAATAACATACAACTTTTACCTTATGAAGTC
326 GAACTAAAAGC-AATGCCAAACCATGTTTAATTGCAATAACATACAACTTTTACCTTATGAAGTC
8071433 AAAACGGCAGTTCATCTCAGTTCACATTCCGCATCACAGAAGAACAACAATCGGGGACCCATGAC
390 AAAACGGCAGTTCATCTCAGTTCACATTCCGCATCACAGAAGAACAACAATCGGGGACCCATGAC
** * * *
8071498 TGTGGGTGCAGTTTG-AAGACAGTCTAGCAAATCAGGTAACTATGTTACAAATTATATCAACAGC
455 CATGAGTGCAGTTTGAAAGACAGGCTAGCAAATCAGGTAACGATGTTACAAATTATATCAACAGC
8071562 ATAACAAATTTTCTTGATGACTAATTGATCTATGTCCCTACCAAGAGAGATTCAAAAGACAACAT
520 ATAAC-AATTTTCTTGATGACTAATTGATCTATGTCCCTACCAAGAGAGATTCAAAAGACAACAT
8071627 TCAAATATCAACCAACTAGTAATCAAGAAATAACCAACAATGGTTTCGGAACATTATTTCCAGTG
584 TCAAATATCAACCAACTAGTAATCAAGAAATAACCAACAATGGTTTCGGAACATTATTTCCAGTG
* *
8071692 GCAAATGTGATTTTGATTGTAAGCTCTGAACAGGGAACTA
649 GCAAATGTGATTGTGATTGCAAGCTCTGAACAGGGAACTA
8071732 TTGTGATTGT
Statistics
Matches: 658, Mismatches: 26, Indels: 11
0.95 0.04 0.02
Matches are distributed among these distances:
714 279 0.42
715 297 0.45
721 3 0.00
722 79 0.12
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.26
Consensus pattern (717 bp):
TATAACATACAACTTTTACCTCATGAGGTCGAAACGGCAGTTCATCTCAGTTCACATTCCGCATC
ACATAAGAACAACAATCGGGGCGACCCATGACCACGAGTGCAGTTTGAAAGACAGTCTAGCAAAT
CAGATAACTATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTAATTGATCTATG
TCCCGATCAAGAGAGATTCAAATGAAAACATTCAAATATCAACCAACTAGTAATCAAGAAATAAC
CAACAATGATTTCAGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGAACAGG
GAACTAAAAGCAATGCCAAACCATGTTTAATTGCAATAACATACAACTTTTACCTTATGAAGTCA
AAACGGCAGTTCATCTCAGTTCACATTCCGCATCACAGAAGAACAACAATCGGGGACCCATGACC
ATGAGTGCAGTTTGAAAGACAGGCTAGCAAATCAGGTAACGATGTTACAAATTATATCAACAGCA
TAACAATTTTCTTGATGACTAATTGATCTATGTCCCTACCAAGAGAGATTCAAAAGACAACATTC
AAATATCAACCAACTAGTAATCAAGAAATAACCAACAATGGTTTCGGAACATTATTTCCAGTGGC
AAATGTGATTGTGATTGCAAGCTCTGAACAGGGAACTAAAAGCAAATACCAAACCATGTTCAATT
GC
Found at i:8080730 original size:56 final size:56
Alignment explanation
Indices: 8080630--8080741 Score: 127
Period size: 56 Copynumber: 2.0 Consensus size: 56
8080620 CCCATATGAA
* * * * *
8080630 TATACTGACTTGGGACACACGGCCAAACCACACGCTTGTGTGCTAAGCTGTGTGAG
1 TATACTGACTTAGGACACACCGCCAAACCACACGCTCGTATGCTAAGCCGTGTGAG
* * * *
8080686 TATACTGACTTAGGTCACACCGCCAAACCATATG-TCCGTATGCTAGGCCGTGTGAG
1 TATACTGACTTAGGACACACCGCCAAACCACACGCT-CGTATGCTAAGCCGTGTGAG
8080742 CAATTTGAGC
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
55 1 0.02
56 45 0.98
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.24
Consensus pattern (56 bp):
TATACTGACTTAGGACACACCGCCAAACCACACGCTCGTATGCTAAGCCGTGTGAG
Found at i:8086497 original size:46 final size:46
Alignment explanation
Indices: 8086445--8086712 Score: 358
Period size: 46 Copynumber: 5.8 Consensus size: 46
8086435 AGTGTGCTCT
* *
8086445 CTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
8086491 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
8086537 GTGATATGAAATGAATAAGACCATGGTTTAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
8086583 CTGACATGAAATGAGTAAGACCATAGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
8086629 ATGACATAAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATAT-GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
8086676 ATGACA-GAAAACGAGTAAAACCATAGTTGAAAGATAC
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATAC
8086713 TATGACATCA
Statistics
Matches: 201, Mismatches: 19, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
46 159 0.79
47 42 0.21
ACGTcount: A:0.42, C:0.15, G:0.22, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:8087335 original size:46 final size:46
Alignment explanation
Indices: 8087258--8087435 Score: 241
Period size: 46 Copynumber: 3.8 Consensus size: 46
8087248 CCAAGCTATG
* *
8087258 ACATGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCA
1 ACATGACATGAAATGAATAAGACCATAGTTGAAAGATACCATGGCA
* *
8087304 ACCTGACATGAAATGAGTAAGACCATAGTTGAAAGATACCATGGCA
1 ACATGACATGAAATGAATAAGACCATAGTTGAAAGATACCATGGCA
* * *
8087350 ACATGACATAAAAATGAATAAGACCATGGTTGAAAGATACCATGTCA
1 ACATGACAT-GAAATGAATAAGACCATAGTTGAAAGATACCATGGCA
* * *
8087397 ACATGACA-GAAAACGAGTAAAACCATAGTTGAAAGATAC
1 ACATGACATG-AAATGAATAAGACCATAGTTGAAAGATAC
8087436 TATGACATCA
Statistics
Matches: 116, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
46 75 0.65
47 41 0.35
ACGTcount: A:0.46, C:0.15, G:0.20, T:0.20
Consensus pattern (46 bp):
ACATGACATGAAATGAATAAGACCATAGTTGAAAGATACCATGGCA
Done.