Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 280 of 349
Found at i:93452143 original size:27 final size:27
Alignment explanation
Indices: 93452124--93452360 Score: 332
Period size: 27 Copynumber: 8.8 Consensus size: 27
93452114 GGGTATTTCA
* *
93452124 GTAATTTTGTAAATTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
93452151 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
93452178 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
93452205 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
93452232 GTAATTTTGTAAATCAAGGGTGAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
93452259 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
93452286 GTAATT-TATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
93452312 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
93452339 GTATTTTTGTAAATCGATGGTA
1 GTAATTCTGTAAATCGAGGGTA
93452361 CTTTGGTAAT
Statistics
Matches: 191, Mismatches: 18, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
26 26 0.14
27 165 0.86
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.31
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:93452371 original size:107 final size:108
Alignment explanation
Indices: 93452124--93452353 Score: 372
Period size: 107 Copynumber: 2.1 Consensus size: 108
93452114 GGGTATTTCA
** * * *
93452124 GTAATTTTGTAAATTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTA
1 GTAATTTTGTAAATCAAGGGTGAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
93452189 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACG
66 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACG
*
93452232 GTAATTTTGTAAATCAAGGGTGAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATT-TATA
1 GTAATTTTGTAAATCAAGGGTGAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
* *
93452296 AATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATG
66 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACG
*
93452339 GTATTTTTGTAAATC
1 GTAATTTTGTAAATC
93452354 GATGGTACTT
Statistics
Matches: 113, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
107 58 0.51
108 55 0.49
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.31
Consensus pattern (108 bp):
GTAATTTTGTAAATCAAGGGTGAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACG
Found at i:93459835 original size:31 final size:31
Alignment explanation
Indices: 93459759--93459836 Score: 129
Period size: 31 Copynumber: 2.5 Consensus size: 31
93459749 CTAAGATTTG
* * *
93459759 AATTGAATTGAATTGAATATGAATTGTGTTA
1 AATTGAGTTAAATTTAATATGAATTGTGTTA
93459790 AATTGAGTTAAATTTAATATGAATTGTGTTA
1 AATTGAGTTAAATTTAATATGAATTGTGTTA
93459821 AATTGAGTTAAATTTA
1 AATTGAGTTAAATTTA
93459837 CTCCTATAGA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.40, C:0.00, G:0.17, T:0.44
Consensus pattern (31 bp):
AATTGAGTTAAATTTAATATGAATTGTGTTA
Found at i:93468358 original size:17 final size:18
Alignment explanation
Indices: 93468331--93468364 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
93468321 AATTAAATAT
93468331 ATGCTTATTAAATTATTA
1 ATGCTTATTAAATTATTA
*
93468349 ATGC-TATTAATTTATT
1 ATGCTTATTAAATTATT
93468365 TAAACAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.53
Consensus pattern (18 bp):
ATGCTTATTAAATTATTA
Found at i:93485391 original size:15 final size:16
Alignment explanation
Indices: 93485363--93485392 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
93485353 CTCTTGCTAT
93485363 GTGGAAATTGAGTTCG
1 GTGGAAATTGAGTTCG
93485379 GTGGAAA-TGAGTTC
1 GTGGAAATTGAGTTC
93485393 AACTAGGCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.27, C:0.07, G:0.37, T:0.30
Consensus pattern (16 bp):
GTGGAAATTGAGTTCG
Found at i:93498768 original size:24 final size:24
Alignment explanation
Indices: 93498741--93498790 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
93498731 TATTCGAGAT
93498741 GTTCACAAAGAACCACATCGGGAA
1 GTTCACAAAGAACCACATCGGGAA
*
93498765 GTTCACAAAGAACCATATCGGGAA
1 GTTCACAAAGAACCACATCGGGAA
93498789 GT
1 GT
93498791 CCGAATAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.40, C:0.22, G:0.22, T:0.16
Consensus pattern (24 bp):
GTTCACAAAGAACCACATCGGGAA
Found at i:93504252 original size:40 final size:40
Alignment explanation
Indices: 93504151--93504420 Score: 368
Period size: 40 Copynumber: 6.8 Consensus size: 40
93504141 GCATTTGAAT
* * * *
93504151 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
* *
93504191 TATCC-GGATAAGACCCGAAGGCATTTGTGCAAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
93504230 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
93504270 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG--ATA
*
93504312 TATCCGGGCTAAGACCCGAAGGCA-TTGTGCAAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
* * *
93504351 TATCCGGGCTAAGACCCGAAGGCATTCGTACGAGTTGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
* * *
93504391 T-GCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
93504421 TTGTGGTATA
Statistics
Matches: 208, Mismatches: 17, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
39 81 0.39
40 89 0.43
41 11 0.05
42 27 0.13
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
Found at i:93504363 original size:121 final size:119
Alignment explanation
Indices: 93504151--93504420 Score: 409
Period size: 121 Copynumber: 2.3 Consensus size: 119
93504141 GCATTTGAAT
* * *
93504151 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGATAAGACCCGAAGGCATT
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTATATCCGGATAAGACCCGAAGGCATT
* *
93504216 TGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
66 TGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTACGAGTTGATA
* *
93504270 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATATCCGGGCTAAGACCCGAAGGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAG-TGAT-TATATCC-GGATAAGACCCGAAGGC
*
93504335 A-TTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTACGAGTTGCTA
63 ATTTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTACGAGTTGATA
* *
93504391 T-GCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
93504421 TTGTGGTATA
Statistics
Matches: 137, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
119 31 0.23
120 30 0.22
121 59 0.43
122 17 0.12
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.25
Consensus pattern (119 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTATATCCGGATAAGACCCGAAGGCATT
TGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTACGAGTTGATA
Found at i:93512263 original size:40 final size:41
Alignment explanation
Indices: 93512212--93512444 Score: 296
Period size: 40 Copynumber: 5.8 Consensus size: 41
93512202 ATTTGAATTT
* * * *
93512212 TATCCAGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGATTT
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATTA
*
93512252 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATTA
* *
93512292 TATCCGGGCTAAGACCCGTAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATTA
* *
93512332 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGAT-TA
*
93512374 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTGATTA
** *
93512414 TGCCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
93512445 TTGTGGTAAT
Statistics
Matches: 175, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
40 133 0.76
41 8 0.05
42 34 0.19
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (41 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATTA
Found at i:93512421 original size:82 final size:80
Alignment explanation
Indices: 93512212--93512444 Score: 299
Period size: 82 Copynumber: 2.9 Consensus size: 80
93512202 ATTTGAATTT
* * * * *
93512212 TATCCAGGCTAAGTCCCGAAGGCAATT-GTGCTAG-TGATTTTATCCGGGCTAAGACCCGAAGGC
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGA-TATACCCGGGCTAAGACCCGAAGGC
93512275 ATTTGTGCGAGTTGATA
64 ATTTGTGCGAGTTGATA
* * * *
93512292 TATCCGGGCTAAGACCCGTAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATACCCGGGCTAAGACCCGAAGGCAT
93512357 TTGTGCGAGTTGATATA
66 TTGTGCGAGTTG--ATA
* * * *
93512374 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATGCCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATACCCGGGCTAAGACCCGAAGGCAT
93512439 TTGTGC
66 TTGTGC
93512445 TTGTGGTAAT
Statistics
Matches: 135, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
79 3 0.02
80 63 0.47
81 3 0.02
82 66 0.49
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGATATACCCGGGCTAAGACCCGAAGGCAT
TTGTGCGAGTTGATA
Found at i:93512427 original size:122 final size:120
Alignment explanation
Indices: 93512212--93512444 Score: 331
Period size: 122 Copynumber: 1.9 Consensus size: 120
93512202 ATTTGAATTT
* * *
93512212 TATCCAGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCAT
1 TATCCAGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCAT
* * * *
93512277 TTGTGCGAGTTGATATATCCGGGCTAAGACCCGTAGGCATTTGTGCGAGTTGATA
66 TCGTGCGAGTTGATATACCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATA
* * *
93512332 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATATCCGGGCTAAGACCCGAAGGC
1 TATCCAGGCTAAGACCCGAAGGCAATTGTGCGAG-TGAT-TATATCCGGGCTAAGACCCGAAGGC
* * *
93512397 ATTCGTGCGAGTTGCTATGCCCGGGTTAAGACCCGAAGGCAATTGTGC
64 ATTCGTGCGAGTTGATATACCCGGGCTAAGACCCGAAGGCAATTGTGC
93512445 TTGTGGTAAT
Statistics
Matches: 98, Mismatches: 13, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
120 29 0.30
121 4 0.04
122 65 0.66
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (120 bp):
TATCCAGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCAT
TCGTGCGAGTTGATATACCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATA
Found at i:93516277 original size:12 final size:12
Alignment explanation
Indices: 93516260--93516285 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
93516250 ATAAACTAAG
93516260 TTTTAATTTAGT
1 TTTTAATTTAGT
93516272 TTTTAATTTAGT
1 TTTTAATTTAGT
93516284 TT
1 TT
93516286 ACTACAGCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (12 bp):
TTTTAATTTAGT
Found at i:93520287 original size:9 final size:9
Alignment explanation
Indices: 93520273--93520302 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
93520263 GTTAAAGTAT
93520273 TAATTAAAC
1 TAATTAAAC
*
93520282 TAATTAAAT
1 TAATTAAAC
93520291 TAATTAAAC
1 TAATTAAAC
93520300 TAA
1 TAA
93520303 ACTAACATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.37
Consensus pattern (9 bp):
TAATTAAAC
Found at i:93524340 original size:25 final size:26
Alignment explanation
Indices: 93524306--93524354 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
93524296 ATTATGTTAA
* *
93524306 AAATTTTATTCAATTATAA-ATTATT
1 AAATTATATTCAATAATAATATTATT
*
93524331 AAATTATATTTAATAATAATATTA
1 AAATTATATTCAATAATAATATTA
93524355 AGATATGATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 16 0.80
26 4 0.20
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (26 bp):
AAATTATATTCAATAATAATATTATT
Found at i:93524367 original size:34 final size:34
Alignment explanation
Indices: 93524328--93524405 Score: 138
Period size: 34 Copynumber: 2.3 Consensus size: 34
93524318 ATTATAAATT
* *
93524328 ATTAAATTATATTTAATAATAATATTAAGATATG
1 ATTAAATTATATTTAATAATAATATAAAAATATG
93524362 ATTAAATTATATTTAATAATAATATAAAAATATG
1 ATTAAATTATATTTAATAATAATATAAAAATATG
93524396 ATTAAATTAT
1 ATTAAATTAT
93524406 TTATTATTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 42 1.00
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.44
Consensus pattern (34 bp):
ATTAAATTATATTTAATAATAATATAAAAATATG
Found at i:93555934 original size:20 final size:20
Alignment explanation
Indices: 93555911--93555948 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
93555901 ATGCTTAAGG
*
93555911 GAATGTGTAAATCTGGAAGT
1 GAATGAGTAAATCTGGAAGT
*
93555931 GAATGAGTAAATTTGGAA
1 GAATGAGTAAATCTGGAA
93555949 ATAATAATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.03, G:0.29, T:0.29
Consensus pattern (20 bp):
GAATGAGTAAATCTGGAAGT
Found at i:93563232 original size:5 final size:5
Alignment explanation
Indices: 93563216--93563245 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
93563206 AAATTATTAA
93563216 GCCCG AGCCCG GCCCG GCCCG GCCCG GCCC
1 GCCCG -GCCCG GCCCG GCCCG GCCCG GCCC
93563246 ATATTAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.03, C:0.60, G:0.37, T:0.00
Consensus pattern (5 bp):
GCCCG
Found at i:93563345 original size:22 final size:22
Alignment explanation
Indices: 93563311--93563362 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
93563301 TCAAATATAT
93563311 TTAAAA-AACATAAAAACAAATA
1 TTAAAACAACATAAAAA-AAATA
*
93563333 TTAAAACAA-ATAAAAATAATA
1 TTAAAACAACATAAAAAAAATA
*
93563354 CTAAAACAA
1 TTAAAACAA
93563363 TTTTTAAAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 12 0.44
22 13 0.48
23 2 0.07
ACGTcount: A:0.71, C:0.10, G:0.00, T:0.19
Consensus pattern (22 bp):
TTAAAACAACATAAAAAAAATA
Found at i:93563347 original size:21 final size:20
Alignment explanation
Indices: 93563315--93563362 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
93563305 ATATATTTAA
* *
93563315 AAAACATAAAAACA-AATATT
1 AAAACA-AAAAAAATAATACT
93563335 AAAACAAATAAAAATAATACT
1 AAAACAAA-AAAAATAATACT
93563356 AAAACAA
1 AAAACAA
93563363 TTTTTAAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 10 0.42
21 12 0.50
ACGTcount: A:0.73, C:0.10, G:0.00, T:0.17
Consensus pattern (20 bp):
AAAACAAAAAAAATAATACT
Found at i:93569204 original size:91 final size:91
Alignment explanation
Indices: 93569085--93569270 Score: 336
Period size: 91 Copynumber: 2.0 Consensus size: 91
93569075 TATTATTGAA
*
93569085 ATATGTGAATTTTACTTAATTAGTAATTTTATAAATGAATTTGGAAAGTATGTGAAATTATGCTT
1 ATATGTGAATTTTACTTAATTAGTAATTTTAGAAATGAATTTGGAAAGTATGTGAAATTATGCTT
*
93569150 AATTGCATGATTTTCATGCATCTTTT
66 AATTGCATGATTTTCATGCATATTTT
*
93569176 ATATGTGAATTTTACTTAATTAGTAATTTTAGACATGAATTTGGAAAGTATGTGAAATTATGCTT
1 ATATGTGAATTTTACTTAATTAGTAATTTTAGAAATGAATTTGGAAAGTATGTGAAATTATGCTT
*
93569241 AATTTCATGATTTTCATGCATATTTT
66 AATTGCATGATTTTCATGCATATTTT
93569267 ATAT
1 ATAT
93569271 TAATTCATGT
Statistics
Matches: 91, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
91 91 1.00
ACGTcount: A:0.33, C:0.06, G:0.14, T:0.46
Consensus pattern (91 bp):
ATATGTGAATTTTACTTAATTAGTAATTTTAGAAATGAATTTGGAAAGTATGTGAAATTATGCTT
AATTGCATGATTTTCATGCATATTTT
Found at i:93570866 original size:10 final size:10
Alignment explanation
Indices: 93570851--93570875 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
93570841 TCTCGAAAAT
93570851 AGCTAGATTA
1 AGCTAGATTA
93570861 AGCTAGATTA
1 AGCTAGATTA
93570871 AGCTA
1 AGCTA
93570876 TTACGATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.12, G:0.20, T:0.28
Consensus pattern (10 bp):
AGCTAGATTA
Found at i:93571050 original size:13 final size:13
Alignment explanation
Indices: 93571034--93571062 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
93571024 TTAATTTTTT
93571034 TTTATTTTTCATC
1 TTTATTTTTCATC
93571047 TTTATTTTTCATC
1 TTTATTTTTCATC
93571060 TTT
1 TTT
93571063 CCAATTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTATTTTTCATC
Found at i:93573225 original size:43 final size:43
Alignment explanation
Indices: 93573144--93573226 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
93573134 TGGGAAAACT
* **
93573144 CCGCTATAGAACATGATCTTTAGCGGTGCTTTTATTACAATCA
1 CCGCTAAAGAACATGATCTTTAGCGGCACTTTTATTACAATCA
* * * *
93573187 CCGCTAAAGAACATGATTTTTAGTGGCATTTTTTTTACAA
1 CCGCTAAAGAACATGATCTTTAGCGGCACTTTTATTACAA
93573227 ACGCTGTAAG
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (43 bp):
CCGCTAAAGAACATGATCTTTAGCGGCACTTTTATTACAATCA
Found at i:93587611 original size:42 final size:42
Alignment explanation
Indices: 93587557--93587653 Score: 142
Period size: 42 Copynumber: 2.3 Consensus size: 42
93587547 CAATTTATAT
* *
93587557 ATATATAGCCGAAGCTATCTTGATCTCGCACAGTAAGTGCAA
1 ATATATAGCCGAAGCTATCTCGATCTCGCACACTAAGTGCAA
* *
93587599 ATATATAGCCGAAGCTATCTCGATTTCGCACACTAAGTGCAC
1 ATATATAGCCGAAGCTATCTCGATCTCGCACACTAAGTGCAA
93587641 ATA-ATTAGCCGAA
1 ATATA-TAGCCGAA
93587654 TCGTTGTCGA
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
41 1 0.02
42 49 0.98
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.26
Consensus pattern (42 bp):
ATATATAGCCGAAGCTATCTCGATCTCGCACACTAAGTGCAA
Found at i:93587878 original size:33 final size:33
Alignment explanation
Indices: 93587836--93587905 Score: 140
Period size: 33 Copynumber: 2.1 Consensus size: 33
93587826 ACTTTTCTTG
93587836 ATCTATATGTAATCAAAATTAAATTATTTAATT
1 ATCTATATGTAATCAAAATTAAATTATTTAATT
93587869 ATCTATATGTAATCAAAATTAAATTATTTAATT
1 ATCTATATGTAATCAAAATTAAATTATTTAATT
93587902 ATCT
1 ATCT
93587906 CAGTATTCAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.44, C:0.07, G:0.03, T:0.46
Consensus pattern (33 bp):
ATCTATATGTAATCAAAATTAAATTATTTAATT
Found at i:93592055 original size:14 final size:14
Alignment explanation
Indices: 93592036--93592075 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
93592026 TTGTTTGCTG
*
93592036 GGAAAATAGTTTCC
1 GGAAAATAATTTCC
*
93592050 GGAAAATAATTTCT
1 GGAAAATAATTTCC
*
93592064 GGAAAATGATTT
1 GGAAAATAATTT
93592076 ATTTTTTTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.40, C:0.07, G:0.20, T:0.33
Consensus pattern (14 bp):
GGAAAATAATTTCC
Found at i:93592094 original size:19 final size:19
Alignment explanation
Indices: 93592067--93592104 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
93592057 AATTTCTGGA
* *
93592067 AAATGATTTATTTTTTTGG
1 AAATAATTTACTTTTTTGG
93592086 AAATAATTTACTTTTTTGG
1 AAATAATTTACTTTTTTGG
93592105 TGTTTGGATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.29, C:0.03, G:0.13, T:0.55
Consensus pattern (19 bp):
AAATAATTTACTTTTTTGG
Found at i:93596416 original size:47 final size:48
Alignment explanation
Indices: 93596211--93596528 Score: 261
Period size: 47 Copynumber: 6.7 Consensus size: 48
93596201 GGGATAAGTT
*
93596211 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTA-TCATCATCAAG
1 GCCGATG-CATGTCCCAGACA-GGTCTTACACTGGCTACTCATCATCGAG
* * * * *
93596260 GCTGATGCCATATCCCAGACATGGTCTTACACTAGCT-CT-AGTATATACG-T
1 GCCGATG-CATGTCCCAGACA-GGTCTTACACTGGCTACTCA-T-CAT-CGAG
* * *
93596310 GCTGATGCATGTCCCAGAC-GTGTCTTACACTAGC-AC-AACTC-TC-A-
1 GCCGATGCATGTCCCAGACAG-GTCTTACACTGGCTACTCA-TCATCGAG
* * *
93596354 GCCGATACATGTCCCAGACACGTCTTACATTGGCTA-TCATCATCGAG
1 GCCGATGCATGTCCCAGACAGGTCTTACACTGGCTACTCATCATCGAG
* * * *
93596401 GCCGATGCATGTCCCAGACATGTCTTACACTAGC-ACTCATC-TCTAC
1 GCCGATGCATGTCCCAGACAGGTCTTACACTGGCTACTCATCATCGAG
* *
93596447 GCCGATGCCATGTCCCAGACATGGTCTTACACTGG-TACTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACA-GGTCTTACACTGGCTACTCATCATCGAG
*
93596495 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
1 GCCGATGCATGTCCCAGACAGGTCTTACACTGGC
93596529 ACACAAGAAA
Statistics
Matches: 221, Mismatches: 28, Indels: 42
0.76 0.10 0.14
Matches are distributed among these distances:
44 30 0.14
45 5 0.02
46 25 0.11
47 62 0.28
48 41 0.19
49 48 0.22
50 9 0.04
51 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.26
Consensus pattern (48 bp):
GCCGATGCATGTCCCAGACAGGTCTTACACTGGCTACTCATCATCGAG
Found at i:93596499 original size:141 final size:140
Alignment explanation
Indices: 93596219--93596528 Score: 360
Period size: 141 Copynumber: 2.2 Consensus size: 140
93596209 TTGCCGATGC
* *
93596219 CATGTCCCAGACATGGTCTTACACTGGCTATCATCATCAAGGCTGATGCCATATCCCAGACATGG
1 CATGTCCCAGACA-CGTCTTACACTGGCTATCATCATCAAGGCCGATGCCATATCCCAGACATGG
* * * *
93596284 TCTTACACTAGCTCTAGTATATACGTGCTGATGCATGTCCCAGACGTGTCTTACACTAGCACAAC
65 TCTTACACTAGCACTAGTATATACG-GCCGATGCATGTCCCAGACATGTCTTACACTAGCACAAA
93596349 TCTCAGCCGATA
129 TCTCAGCCGATA
* * *
93596361 CATGTCCCAGACACGTCTTACATTGGCTATCATCATCGAGGCCGATG-CATGTCCCAGACAT-GT
1 CATGTCCCAGACACGTCTTACACTGGCTATCATCATCAAGGCCGATGCCATATCCCAGACATGGT
* * * *
93596424 CTTACACTAGCACTCA-TCTCTAC-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGTACTC
66 CTTACACTAGCACT-AGTATATACGGCCGATG-CATGTCCCAGACAT-GTCTTACACTAG--CAC
* * *
93596487 ATAATGT-GGCCGATG
126 A-AATCTCAGCCGATA
*
93596502 CATGTCCCAGACATGTCTTACACTGGC
1 CATGTCCCAGACACGTCTTACACTGGC
93596529 ACACAAGAAA
Statistics
Matches: 144, Mismatches: 18, Indels: 13
0.82 0.10 0.07
Matches are distributed among these distances:
137 6 0.04
138 13 0.09
139 31 0.22
140 14 0.10
141 64 0.44
142 16 0.11
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (140 bp):
CATGTCCCAGACACGTCTTACACTGGCTATCATCATCAAGGCCGATGCCATATCCCAGACATGGT
CTTACACTAGCACTAGTATATACGGCCGATGCATGTCCCAGACATGTCTTACACTAGCACAAATC
TCAGCCGATA
Found at i:93596510 original size:94 final size:94
Alignment explanation
Indices: 93596211--93596525 Score: 342
Period size: 94 Copynumber: 3.3 Consensus size: 94
93596201 GGGATAAGTT
* * * * *
93596211 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATCATCAAGGCTGATGCCATATCCC
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGC-ATCATC-TCTACGCCGATGCCATGTCCC
*
93596276 AGACATGGTCTTACACTAG--CTCTAGTATATACGT-
62 AGACATGGTCTTACACTGGTACTC-A-TA-AT-CGTG
* * * *
93596310 GCTGATGCATGTCCCAGACGTGTCTTACACTAGCA-CAACTCT-CAGCCGAT-ACATGTCCCAGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCATCATCTCTAC-GCCGATGCCATGTCCCAGA
* * * *
93596372 CA-CGTCTTACATTGGCTA-TCATCATCGAG
65 CATGGTCTTACACTGG-TACTCATAATCGTG
93596401 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCTACGCCGATGCCATGTCCCAGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCA-TCATCTCTACGCCGATGCCATGTCCCAGA
93596466 CATGGTCTTACACTGGTACTCATAAT-GTG
65 CATGGTCTTACACTGGTACTCATAATCGTG
93596495 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
93596526 GGCACACAAG
Statistics
Matches: 183, Mismatches: 22, Indels: 27
0.79 0.09 0.12
Matches are distributed among these distances:
90 2 0.01
91 35 0.19
92 11 0.06
93 25 0.14
94 58 0.32
95 20 0.11
96 1 0.01
97 12 0.07
98 13 0.07
99 6 0.03
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.26
Consensus pattern (94 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCATCATCTCTACGCCGATGCCATGTCCCAGAC
ATGGTCTTACACTGGTACTCATAATCGTG
Found at i:93597264 original size:12 final size:12
Alignment explanation
Indices: 93597247--93597271 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
93597237 CAAAAATGTA
93597247 AAAATCATCAAG
1 AAAATCATCAAG
93597259 AAAATCATCAAG
1 AAAATCATCAAG
93597271 A
1 A
93597272 TCACTTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:93599094 original size:20 final size:20
Alignment explanation
Indices: 93599066--93599108 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
93599056 AAATATAAAA
* *
93599066 AAAACTTATAATTATTTTTT
1 AAAACTTATAATGAATTTTT
* *
93599086 AAAAGTTATTATGAATTTTT
1 AAAACTTATAATGAATTTTT
93599106 AAA
1 AAA
93599109 GTCAGAACAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (20 bp):
AAAACTTATAATGAATTTTT
Found at i:93601414 original size:91 final size:93
Alignment explanation
Indices: 93601302--93601470 Score: 297
Period size: 91 Copynumber: 1.8 Consensus size: 93
93601292 GCCCCTAAGT
* *
93601302 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTC-GACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
93601366 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
93601394 GAACTC-GACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
93601458 CGAGTTCGGATGC
66 CGAGTTCGGATGC
93601471 TCAACCATCC
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
91 42 0.58
92 31 0.42
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:93601450 original size:46 final size:45
Alignment explanation
Indices: 93601297--93601467 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 45
93601287 AACCCGCCCC
* * *
93601297 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTC-GACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
93601343 TAAGTGAACTCGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
93601390 TCA-CGAACTCGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGACTCAACTCAACGAGTTCGGACATTCGCATCCA
93601434 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTC-GACTCAACTCAACGAGTTCGGA
93601468 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
43 1 0.01
44 2 0.02
45 26 0.25
46 61 0.59
47 2 0.02
48 1 0.01
49 3 0.03
50 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
TAAGTGAACTCGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:93601921 original size:30 final size:30
Alignment explanation
Indices: 93601887--93601946 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
93601877 ATTTAATACG
93601887 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
93601917 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
93601947 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:93604444 original size:93 final size:93
Alignment explanation
Indices: 93604337--93604507 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
93604327 GCCCCTAAGT
* *
93604337 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
93604402 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
93604430 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
93604495 CGAGTTCGGATGC
66 CGAGTTCGGATGC
93604508 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:93604504 original size:46 final size:46
Alignment explanation
Indices: 93604332--93604504 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
93604322 AACCCGCCCC
* * *
93604332 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
93604378 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
93604426 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
93604471 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
93604505 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:93604953 original size:30 final size:30
Alignment explanation
Indices: 93604919--93604978 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
93604909 ATTTAATACG
93604919 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
93604949 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
93604979 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:93607490 original size:92 final size:92
Alignment explanation
Indices: 93607379--93607548 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
93607369 GCCCCTAAGT
* *
93607379 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
93607444 CGAGTTCGGATGCCTAGTTACATTCAC
66 CGAGTTCGGATGCCTAGTTACATTCAC
*
93607471 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
93607536 CGAGTTCGGATGC
66 CGAGTTCGGATGC
93607549 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTCAC
Found at i:93607545 original size:46 final size:46
Alignment explanation
Indices: 93607374--93607545 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
93607364 AACCCGCCCC
* * *
93607374 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
93607420 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--TCCA
* *
93607466 TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
93607512 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
93607546 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 95 0.88
47 2 0.02
48 4 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:93607564 original size:46 final size:46
Alignment explanation
Indices: 93607376--93607564 Score: 151
Period size: 46 Copynumber: 4.1 Consensus size: 46
93607366 CCCGCCCCTA
* ** * *
93607376 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T
*
93607421 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTC-
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCT
* * * * *
93607469 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCCT
93607514 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
93607560 AGTGA
1 AGTGA
93607565 CATGTCACTT
Statistics
Matches: 116, Mismatches: 13, Indels: 28
0.74 0.08 0.18
Matches are distributed among these distances:
44 9 0.08
45 2 0.02
46 95 0.82
47 1 0.01
48 4 0.03
49 1 0.01
50 4 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:93607998 original size:30 final size:30
Alignment explanation
Indices: 93607964--93608023 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
93607954 ATTTAATACG
93607964 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
93607994 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
93608024 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:93620097 original size:24 final size:24
Alignment explanation
Indices: 93620070--93620152 Score: 148
Period size: 24 Copynumber: 3.5 Consensus size: 24
93620060 GAAATGATTT
*
93620070 TGGCACTATGTGTGCGAATTTGAA
1 TGGCACTATGTGTGCGAATTTGTA
93620094 TGGCACTATGTGTGCGAATTTGTA
1 TGGCACTATGTGTGCGAATTTGTA
*
93620118 TGGCACTATGTGTGCGGATTTGTA
1 TGGCACTATGTGTGCGAATTTGTA
93620142 TGGCACTATGT
1 TGGCACTATGT
93620153 CGGATTGGAA
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 57 1.00
ACGTcount: A:0.20, C:0.13, G:0.30, T:0.36
Consensus pattern (24 bp):
TGGCACTATGTGTGCGAATTTGTA
Found at i:93626427 original size:17 final size:17
Alignment explanation
Indices: 93626401--93626434 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
93626391 TATATAATTG
*
93626401 AAATATGTTATAATATA
1 AAATAAGTTATAATATA
93626418 AAATAAGTTATAATATA
1 AAATAAGTTATAATATA
93626435 TTAAGTGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (17 bp):
AAATAAGTTATAATATA
Found at i:93627674 original size:24 final size:24
Alignment explanation
Indices: 93627609--93627676 Score: 109
Period size: 24 Copynumber: 2.8 Consensus size: 24
93627599 GAAATGATTT
* *
93627609 TGGCACAATGTGTGCGAATTTGTA
1 TGGCACTATGTGTGCGGATTTGTA
93627633 TGGCACTATGTGTGCGGATTTGTA
1 TGGCACTATGTGTGCGGATTTGTA
*
93627657 TGGCACTATGTGTACGGATT
1 TGGCACTATGTGTGCGGATT
93627677 GCAATGTCAA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.21, C:0.13, G:0.31, T:0.35
Consensus pattern (24 bp):
TGGCACTATGTGTGCGGATTTGTA
Found at i:93631964 original size:27 final size:28
Alignment explanation
Indices: 93631880--93631977 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
93631870 CATGAGATTG
* * * *
93631880 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
93631909 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
93631937 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
93631964 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
93631978 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:93631988 original size:27 final size:27
Alignment explanation
Indices: 93631908--93631990 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
93631898 TAAATTGTAC
* *
93631908 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
93631936 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
93631963 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
93631990 A
1 A
93631991 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:93631991 original size:29 final size:27
Alignment explanation
Indices: 93631880--93631991 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
93631870 CATGAGATTG
** * *
93631880 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
93631909 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
93631937 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
93631964 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
93631992 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:93636468 original size:27 final size:27
Alignment explanation
Indices: 93636437--93636640 Score: 187
Period size: 27 Copynumber: 7.5 Consensus size: 27
93636427 ATATTGAGCC
* * *
93636437 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCCACATAATCAACT
* * *
93636464 TGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCCACATAATCAACT
*
93636491 CGCACACTTAGTGCCACATAGTCAGACT
1 CGCACACTTAGTGCCACATAATCA-ACT
* ** *
93636519 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCCACATAATCAACT
* **
93636546 CGCACACTTAGTG-CATCATATTCATTT
1 CGCACACTTAGTGCCA-CATAATCAACT
* * **
93636573 CGCACACTTAGTGCAACATATTCATTT
1 CGCACACTTAGTGCCACATAATCAACT
* *
93636600 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCCACATAATC-AACT
93636627 CGCACACTTAGTGC
1 CGCACACTTAGTGC
93636641 TGTACAATTT
Statistics
Matches: 153, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
26 1 0.01
27 126 0.82
28 26 0.17
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCCACATAATCAACT
Found at i:93644513 original size:27 final size:27
Alignment explanation
Indices: 93644483--93644686 Score: 187
Period size: 27 Copynumber: 7.5 Consensus size: 27
93644473 ATATTGAGCC
* * *
93644483 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCCACATAATCAACT
* *
93644510 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCCACATAATCAACT
*
93644537 CGCACACTTAGTGCCACATAGTCAGACT
1 CGCACACTTAGTGCCACATAATCA-ACT
* ** *
93644565 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCCACATAATCAACT
* **
93644592 CGCACACTTAGTG-CATCATATTCATTT
1 CGCACACTTAGTGCCA-CATAATCAACT
* * **
93644619 CGCACACTTAGTGCAACATATTCATTT
1 CGCACACTTAGTGCCACATAATCAACT
* * *
93644646 CGGACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCCACATAATC-AACT
93644673 CGCACACTTAGTGC
1 CGCACACTTAGTGC
93644687 TGTACAATTT
Statistics
Matches: 153, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
26 1 0.01
27 126 0.82
28 26 0.17
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCCACATAATCAACT
Found at i:93644622 original size:82 final size:79
Alignment explanation
Indices: 93644483--93644686 Score: 210
Period size: 82 Copynumber: 2.5 Consensus size: 79
93644473 ATATTGAGCC
* * * * *
93644483 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAG
1 CGCACACTTAGTGCAACATAGTCAA-TCGCACACTTAGTG-CACATAATCAAATCGCACACTTAG
*
93644548 TGCCACATAGTCAGACT
64 TGCAACATAGTCA-ACT
** * * **
93644565 CGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAG
1 CGCACACTTAGTGCAACATAGTCAA-TCGCACACTTAGTGCA-CATAATCAAATCGCACACTTAG
* **
93644630 TGCAACATATTCATTT
64 TGCAACATAGTCAACT
*
93644646 CGGACACTTAGTGCAACATAGTCGAATCGCACACTTAGTGC
1 CGCACACTTAGTGCAACATAGTC-AATCGCACACTTAGTGC
93644687 TGTACAATTT
Statistics
Matches: 101, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
81 37 0.37
82 64 0.63
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.26
Consensus pattern (79 bp):
CGCACACTTAGTGCAACATAGTCAATCGCACACTTAGTGCACATAATCAAATCGCACACTTAGTG
CAACATAGTCAACT
Found at i:93651427 original size:27 final size:28
Alignment explanation
Indices: 93651343--93651440 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
93651333 CATGAGATTG
* * * *
93651343 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
93651372 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
93651400 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
93651427 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
93651441 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:93651451 original size:27 final size:27
Alignment explanation
Indices: 93651371--93651453 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
93651361 TAAATTGTAC
* *
93651371 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
93651399 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
93651426 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
93651453 A
1 A
93651454 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:93651454 original size:29 final size:27
Alignment explanation
Indices: 93651343--93651454 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
93651333 CATGAGATTG
** * *
93651343 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
93651372 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
93651400 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
93651427 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
93651455 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:93655531 original size:40 final size:39
Alignment explanation
Indices: 93655487--93655698 Score: 237
Period size: 40 Copynumber: 5.3 Consensus size: 39
93655477 GGACTAAGAT
*
93655487 CCGAAGGCATTTGTGCGAGATACAAATTCTGGGTTAAGCC
1 CCGAAGGCATTTGTGCGAGATACAAA-TCCGGGTTAAGCC
*
93655527 CCGAAGGCCTTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTTGTGCGAGATACAAA-TCCGGGTTAAGCC
* *
93655567 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATCCGGGTTAAGCC
* * * * *
93655607 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTTGTGCGAGATA-CAAATCCGGGTTAAGCC
* * * * * *
93655647 CCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATCCGGGTTAAGCC
93655686 CCGAAGGCATTTG
1 CCGAAGGCATTTG
93655699 AACGAGGAGC
Statistics
Matches: 155, Mismatches: 13, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 33 0.21
40 119 0.77
41 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACAAATCCGGGTTAAGCC
Found at i:93655678 original size:39 final size:39
Alignment explanation
Indices: 93655434--93655696 Score: 235
Period size: 40 Copynumber: 6.6 Consensus size: 39
93655424 TTGAATGCTG
* * * * * *
93655434 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** *
93655474 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAAA
* * * *
93655513 TTCTGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATAC-AAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
* * *
93655553 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
*
93655594 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* *
93655634 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
93655673 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
93655697 TGAACGAGGA
Statistics
Matches: 194, Mismatches: 22, Indels: 15
0.84 0.10 0.06
Matches are distributed among these distances:
39 40 0.21
40 143 0.74
41 11 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:93658997 original size:47 final size:47
Alignment explanation
Indices: 93658878--93659100 Score: 222
Period size: 47 Copynumber: 4.7 Consensus size: 47
93658868 ATAAGTTTCT
* * * * *
93658878 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATATACG-TGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCAT-TAT-CGAGGCC
**
93658928 GATGCATGT-CCAGACACATCTTACACTGGCTA-TCATTATCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-ACTCATTATCGAGGCC
* * * * *
93658974 AATGCATGTCCCATACATGTCTTACACTGGCACTCA-TCTCTACGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATTATCGAGGCC
* *
93659020 GATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAAT-GTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATTATCGAGGCC
93659068 GATGCATGTCCCAGACATGTCTTACACTGGCAC
1 GATGCATGTCCCAGACATGTCTTACACTGGCAC
93659101 ACAAGAAATT
Statistics
Matches: 145, Mismatches: 21, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
45 2 0.01
46 39 0.27
47 62 0.43
48 32 0.22
49 6 0.04
50 4 0.03
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCACTCATTATCGAGGCC
Found at i:93659035 original size:94 final size:93
Alignment explanation
Indices: 93658883--93659100 Score: 253
Period size: 94 Copynumber: 2.3 Consensus size: 93
93658873 TTTCTGATGC
* * * *
93658883 CATGTCCCAGACATGGTCTTACACTAGCTCTCGTATATACGTGCTGATGCATGTCCAGACA-CAT
1 CATGTCCCAGACAT-GTCTTACACTGGCACTCATATATACG-GCCGATGCATGTCCAGACATCAT
*
93658947 CTTACACTGGCTA-TCATTATCGAGGCCAATG
64 CTTACACTGGC-ACTCATAAT-GAGGCCAATG
* * * **
93658978 CATGTCCCATACATGTCTTACACTGGCACTCATCTCTAC-GCCGATGCCATGTCCCAGACATGGT
1 CATGTCCCAGACATGTCTTACACTGGCACTCATATATACGGCCGATG-CATGT-CCAGACATCAT
* *
93659042 CTTACACTGGCACTCATAATGTGGCCGATG
64 CTTACACTGGCACTCATAATGAGGCCAATG
93659072 CATGTCCCAGACATGTCTTACACTGGCAC
1 CATGTCCCAGACATGTCTTACACTGGCAC
93659101 ACAAGAAATT
Statistics
Matches: 106, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
92 6 0.06
93 5 0.05
94 64 0.60
95 31 0.29
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (93 bp):
CATGTCCCAGACATGTCTTACACTGGCACTCATATATACGGCCGATGCATGTCCAGACATCATCT
TACACTGGCACTCATAATGAGGCCAATG
Found at i:93659837 original size:12 final size:12
Alignment explanation
Indices: 93659820--93659844 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
93659810 CAAAAATGTA
93659820 AAAATCATCAAG
1 AAAATCATCAAG
93659832 AAAATCATCAAG
1 AAAATCATCAAG
93659844 A
1 A
93659845 TCACTTGCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:93662495 original size:19 final size:20
Alignment explanation
Indices: 93662473--93662517 Score: 58
Period size: 19 Copynumber: 2.3 Consensus size: 20
93662463 AAAAAATAGG
*
93662473 AAATAGTAATATAG-TAA-AA
1 AAATAATAATAT-GTTAATAA
93662492 AAATAATAATATGTTAATAA
1 AAATAATAATATGTTAATAA
93662512 AAATAA
1 AAATAA
93662518 CAGTAGTAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 1 0.04
19 14 0.61
20 8 0.35
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.29
Consensus pattern (20 bp):
AAATAATAATATGTTAATAA
Found at i:93662502 original size:25 final size:24
Alignment explanation
Indices: 93662449--93662496 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 24
93662439 TGTTAATATC
93662449 AATAATAATATATAAAAAAATAGGA
1 AATAATAATATATAAAAAAATA-GA
*
93662474 AATAGTAATATAGTAAAAAAATA
1 AATAATAATATA-TAAAAAAATA
93662497 ATAATATGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
25 11 0.52
26 10 0.48
ACGTcount: A:0.67, C:0.00, G:0.08, T:0.25
Consensus pattern (24 bp):
AATAATAATATATAAAAAAATAGA
Found at i:93662580 original size:3 final size:3
Alignment explanation
Indices: 93662547--93662767 Score: 87
Period size: 3 Copynumber: 73.7 Consensus size: 3
93662537 AAAGTTATAG
* * * * * *
93662547 TAA TAA AAA TAA AAA TAA CAA TAA TAG TAA TAA TGA TAG TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * *
93662595 TAA TGA TAA T-A TAA CAA TAA CAG TAA TATA TAA AAA GGAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA -TAA TAA TAA
* * * * * * * *
93662641 TAG T-A TAG TAA AAA TAA TAA TAA T-G TAT TAA TAG GAA TGA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
93662687 TAA -AA TGAGA TTA TAA TAA TAA TAT TAA TAA AAA TAA -ACA TAA -AA
1 TAA TAA T-A-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA
* * * *
93662732 GAAA TAG TAA TAA TAG TAA TAC T-A TAAA TAA TAA TA
1 -TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TA
93662768 TATGTATGGA
Statistics
Matches: 153, Mismatches: 51, Indels: 28
0.66 0.22 0.12
Matches are distributed among these distances:
2 10 0.07
3 130 0.85
4 11 0.07
5 2 0.01
ACGTcount: A:0.61, C:0.02, G:0.08, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:93662647 original size:23 final size:23
Alignment explanation
Indices: 93662621--93662685 Score: 66
Period size: 23 Copynumber: 3.0 Consensus size: 23
93662611 ATAACAGTAA
93662621 TATATAAAAAGGAATAATAATAG
1 TATATAAAAAGGAATAATAATAG
*
93662644 TATAGTAAAAA-TAATAATAAT-G
1 TATA-TAAAAAGGAATAATAATAG
* *
93662666 TAT-T-AATAGGAATGATAATA
1 TATATAAAAAGGAATAATAATA
93662686 ATAAAATGAG
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
19 3 0.09
20 9 0.26
22 4 0.11
23 13 0.37
24 6 0.17
ACGTcount: A:0.57, C:0.00, G:0.12, T:0.31
Consensus pattern (23 bp):
TATATAAAAAGGAATAATAATAG
Found at i:93662657 original size:43 final size:46
Alignment explanation
Indices: 93662555--93662687 Score: 110
Period size: 43 Copynumber: 2.9 Consensus size: 46
93662545 AGTAATAAAA
* * *
93662555 ATAAAAATAACAATAATAGTAATAATGATAGTAATAATAATAATGATAAT
1 ATAACAATAACAATAATA-T-ATAA--AAAGGAATAATAATAATGATAAT
* * *
93662605 ATAACAATAACAGTAATATATAAAAAGGAATAATAATAGT-ATAGT
1 ATAACAATAACAATAATATATAAAAAGGAATAATAATAATGATAAT
* * * * *
93662650 A-AA-AATAATAATAATGTATTAATAGGAATGATAATAAT
1 ATAACAATAACAATAATATATAAAAAGGAATAATAATAAT
93662688 AAAATGAGAT
Statistics
Matches: 70, Mismatches: 13, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
43 28 0.40
44 2 0.03
45 5 0.07
46 14 0.20
48 4 0.06
49 1 0.01
50 16 0.23
ACGTcount: A:0.59, C:0.02, G:0.10, T:0.29
Consensus pattern (46 bp):
ATAACAATAACAATAATATATAAAAAGGAATAATAATAATGATAAT
Found at i:93662672 original size:14 final size:15
Alignment explanation
Indices: 93662655--93662717 Score: 60
Period size: 14 Copynumber: 4.4 Consensus size: 15
93662645 ATAGTAAAAA
93662655 TAATAATAATG-TAT
1 TAATAATAATGATAT
** *
93662669 TAATAGGAATGATAA
1 TAATAATAATGATAT
*
93662684 TAATAA-AATGAGAT
1 TAATAATAATGATAT
*
93662698 T-ATAATAATAATAT
1 TAATAATAATGATAT
93662712 TAATAA
1 TAATAA
93662718 AAATAAACAT
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
13 4 0.11
14 23 0.61
15 11 0.29
ACGTcount: A:0.56, C:0.00, G:0.10, T:0.35
Consensus pattern (15 bp):
TAATAATAATGATAT
Found at i:93662832 original size:16 final size:16
Alignment explanation
Indices: 93662811--93662860 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
93662801 AAGAAAAGAA
*
93662811 AAATATGTATATACAT
1 AAATATATATATACAT
*
93662827 AAATATATATATATAT
1 AAATATATATATACAT
93662843 -AATAATATATATA-AT
1 AAAT-ATATATATACAT
93662858 AAA
1 AAA
93662861 AGAAATAGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
15 5 0.17
16 25 0.83
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (16 bp):
AAATATATATATACAT
Found at i:93662850 original size:12 final size:12
Alignment explanation
Indices: 93662835--93662859 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
93662825 ATAAATATAT
93662835 ATATATATAATA
1 ATATATATAATA
93662847 ATATATATAATA
1 ATATATATAATA
93662859 A
1 A
93662860 AAGAAATAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
ATATATATAATA
Found at i:93662867 original size:18 final size:17
Alignment explanation
Indices: 93662809--93662877 Score: 52
Period size: 18 Copynumber: 4.0 Consensus size: 17
93662799 AAAAGAAAAG
* *
93662809 AAAAATATGTAT-ATAC
1 AAAAATATATATAATAA
* *
93662825 ATAAATATATATATATAT
1 AAAAATATATATA-ATAA
*
93662843 AATAATATATATAATAA
1 AAAAATATATATAATAA
93662860 AAGAAATAGTA-ATAATAA
1 AA-AAATA-TATATAATAA
93662878 TGGCATTAGA
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
16 10 0.24
17 5 0.12
18 25 0.60
19 2 0.05
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.33
Consensus pattern (17 bp):
AAAAATATATATAATAA
Found at i:93662921 original size:3 final size:3
Alignment explanation
Indices: 93662913--93662947 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
93662903 GTACAAGTAC
* *
93662913 AAT AAT AAT AAT AAT AAT AAT AAG AGT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
93662948 CATTTTAGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:93664449 original size:44 final size:45
Alignment explanation
Indices: 93664354--93664452 Score: 112
Period size: 45 Copynumber: 2.2 Consensus size: 45
93664344 TCTGCTCCGT
* ** * * *
93664354 TGCAACTTCAAGGAGATGAGGTTTGCTATCTTCAGTCTGCTCCAC
1 TGCAACTTCAAGGAGATAAGACTTGCTAACTTCACTCTGCCCCAC
*
93664399 TACAACTTCAAGGAGATAAGACTTG-TAACTTCAACT-TGCCCCAC
1 TGCAACTTCAAGGAGATAAGACTTGCTAACTTC-ACTCTGCCCCAC
93664443 TGCAACTTCA
1 TGCAACTTCA
93664453 GGGGGGTAAG
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
44 22 0.49
45 23 0.51
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (45 bp):
TGCAACTTCAAGGAGATAAGACTTGCTAACTTCACTCTGCCCCAC
Found at i:93664535 original size:44 final size:43
Alignment explanation
Indices: 93664487--93664629 Score: 125
Period size: 44 Copynumber: 3.3 Consensus size: 43
93664477 GCCTTTTACC
*
93664487 CTACTGCTTAGGGGGTTAAGACTCACTGTCTTTGATCTACTCCA
1 CTACTGCTTAGGGGGTTAAGACTCACTATCTTTGATCT-CTCCA
* * * * *
93664531 CTACTACTTAGGGAGATAAGA-TCTA-TAAT-TTGGCATGT-TACC-
1 CTACTGCTTAGGGGGTTAAGACTC-ACT-ATCTTTG-ATCTCT-CCA
* *
93664573 CTACTGCTTAGGGGGTTAAGGCTCACCATCTTTGATCTGCTCCA
1 CTACTGCTTAGGGGGTTAAGACTCACTATCTTTGATCT-CTCCA
93664617 CTACTGCTTAGGG
1 CTACTGCTTAGGG
93664630 AGACAAGATC
Statistics
Matches: 76, Mismatches: 13, Indels: 20
0.70 0.12 0.18
Matches are distributed among these distances:
42 24 0.32
43 15 0.20
44 37 0.49
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.33
Consensus pattern (43 bp):
CTACTGCTTAGGGGGTTAAGACTCACTATCTTTGATCTCTCCA
Found at i:93664581 original size:86 final size:86
Alignment explanation
Indices: 93664482--93664646 Score: 267
Period size: 86 Copynumber: 1.9 Consensus size: 86
93664472 TTCCAGCCTT
**
93664482 TTACCCTACTGCTTAGGGGGTTAAGACTCACTGTCTTTGATCTACTCCACTACTACTTAGGGAGA
1 TTACCCTACTGCTTAGGGGGTTAAGACTCACCATCTTTGATCTACTCCACTACTACTTAGGGAGA
*
93664547 TAAGATCTATAATTTGGCATG
66 CAAGATCTATAATTTGGCATG
* * *
93664568 TTACCCTACTGCTTAGGGGGTTAAGGCTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGA
1 TTACCCTACTGCTTAGGGGGTTAAGACTCACCATCTTTGATCTACTCCACTACTACTTAGGGAGA
*
93664633 CAAGATCTGTAATT
66 CAAGATCTATAATT
93664647 CGGCCACTAC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
86 72 1.00
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (86 bp):
TTACCCTACTGCTTAGGGGGTTAAGACTCACCATCTTTGATCTACTCCACTACTACTTAGGGAGA
CAAGATCTATAATTTGGCATG
Found at i:93664661 original size:36 final size:36
Alignment explanation
Indices: 93664614--93664687 Score: 130
Period size: 36 Copynumber: 2.1 Consensus size: 36
93664604 TTGATCTGCT
*
93664614 CCACTACTGCTTAGGGAGACAAGATCTGTAATTCGG
1 CCACTACTGCTTAGGGAGACAAGATCTATAATTCGG
*
93664650 CCACTACTGCTTAGGGAGACAAGGTCTATAATTCGG
1 CCACTACTGCTTAGGGAGACAAGATCTATAATTCGG
93664686 CC
1 CC
93664688 TGTTACCCTA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (36 bp):
CCACTACTGCTTAGGGAGACAAGATCTATAATTCGG
Found at i:93664692 original size:122 final size:122
Alignment explanation
Indices: 93664528--93664773 Score: 438
Period size: 122 Copynumber: 2.0 Consensus size: 122
93664518 TTGATCTACT
* *
93664528 CCACTACTACTTAGGGAGATAAGATCTATAATTTGGCATGTTACCCTACTGCTTAGGGGGTTAAG
1 CCACTACTACTTAGGGAGACAAGATCTATAATTCGGCATGTTACCCTACTGCTTAGGGGGTTAAG
93664593 GCTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTCGG
66 GCTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTCGG
* * * *
93664650 CCACTACTGCTTAGGGAGACAAGGTCTATAATTCGGCCTGTTACCCTACTGCTTAGGGTGTTAAG
1 CCACTACTACTTAGGGAGACAAGATCTATAATTCGGCATGTTACCCTACTGCTTAGGGGGTTAAG
93664715 GCTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTCGG
66 GCTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTCGG
93664772 CC
1 CC
93664774 TGTTACCCTA
Statistics
Matches: 118, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
122 118 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (122 bp):
CCACTACTACTTAGGGAGACAAGATCTATAATTCGGCATGTTACCCTACTGCTTAGGGGGTTAAG
GCTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTCGG
Found at i:93664840 original size:208 final size:208
Alignment explanation
Indices: 93664477--93664855 Score: 623
Period size: 208 Copynumber: 1.8 Consensus size: 208
93664467 GTAATTTCCA
* **
93664477 GCCTTTTACCCTACTGCTTAGGGGGTTAAGACTCACTGTCTTTGATCTACTCCACTACTACTTAG
1 GCCTGTTACCCTACTGCTTAGGGGGTTAAGACTCACCATCTTTGATCTACTCCACTACTACTTAG
* * *
93664542 GGAGATAAGATCTATAATTTGGCATGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCATCTTTG
66 GGAGACAAGATCTATAATTCGGCATGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCATCTTCG
93664607 ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTCGGCCACTACTGCTTAGGGAGACAA
131 ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTCGGCCACTACTGCTTAGGGAGACAA
93664672 GGTCTATAATTCG
196 GGTCTATAATTCG
* * * *
93664685 GCCTGTTACCCTACTGCTTAGGGTGTTAAGGCTCACCATCTTTGATCTGCTCCACTACTGCTTAG
1 GCCTGTTACCCTACTGCTTAGGGGGTTAAGACTCACCATCTTTGATCTACTCCACTACTACTTAG
* * *
93664750 GGAGACAAGATCTGTAATTCGGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCG
66 GGAGACAAGATCTATAATTCGGCATGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCATCTTCG
* *
93664815 ATCTGCTCTACTATTGCTTAGGGAGACAAGATCTGTAATTC
131 ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTC
93664856 TCCAGCCTGT
Statistics
Matches: 156, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
208 156 1.00
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.31
Consensus pattern (208 bp):
GCCTGTTACCCTACTGCTTAGGGGGTTAAGACTCACCATCTTTGATCTACTCCACTACTACTTAG
GGAGACAAGATCTATAATTCGGCATGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCATCTTCG
ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTCGGCCACTACTGCTTAGGGAGACAA
GGTCTATAATTCG
Found at i:93664882 original size:175 final size:177
Alignment explanation
Indices: 93664651--93665069 Score: 580
Period size: 175 Copynumber: 2.4 Consensus size: 177
93664641 GTAATTCGGC
* * * * *
93664651 CACTACTGCTTAGGGAGACAAGGTCTATAA-T-T-CGGCCTGTTACCCTACTGCTTAGGGTGTTA
1 CACTACTGCTTAGGGAGACAAGATCTGTAATTCTCCAGCCTGTTACCCTACTACTTAGGGGGTTA
* * *
93664713 AGGCTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAA-T-T-CGGCCT
66 AGGCTCACCATCTTAGATCTGCTCCACTACTGCTGAGGGAGACAAGATCTGTAATTCTCCAGCCT
* *
93664775 GTTACCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCTGCT
131 GTTACCCTACTGCTTAGGGGGTTAAGGCTCACCATCTTAGATCTGCT
*
93664822 CTACTATTGCTTAGGGAGACAAGATCTGTAATTCTCCAGCCTGTTACCCTACTACTTAGGGGGTT
1 C-ACTACTGCTTAGGGAGACAAGATCTGTAATTCTCCAGCCTGTTACCCTACTACTTAGGGGGTT
* * * * *
93664887 AAGGCCCATCATCTTAGATCTGTTCCCCTACTGCTGAGGGAGACAAGATCTGTAATTCTCCAGCT
65 AAGGCTCACCATCTTAGATCTGCTCCACTACTGCTGAGGGAGACAAGATCTGTAATTCTCCAGCC
* *
93664952 TGTTACCCTACTGCTTAGGGGGTTAAGGCTCATCATCTTAGATCTGTT
130 TGTTACCCTACTGCTTAGGGGGTTAAGGCTCACCATCTTAGATCTGCT
* * * * *
93665000 CCCCACTGCTTAGGGAGACAAGATTTGTATTTCTCCAGCCTGTTACCCTACTACTTTGGGGGTTA
1 CACTACTGCTTAGGGAGACAAGATCTGTAATTCTCCAGCCTGTTACCCTACTACTTAGGGGGTTA
93665065 AGGCT
66 AGGCT
93665070 TACAAATTCA
Statistics
Matches: 216, Mismatches: 25, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
171 1 0.00
172 26 0.12
173 1 0.00
174 1 0.00
175 75 0.35
176 1 0.00
177 63 0.29
178 48 0.22
ACGTcount: A:0.21, C:0.25, G:0.22, T:0.31
Consensus pattern (177 bp):
CACTACTGCTTAGGGAGACAAGATCTGTAATTCTCCAGCCTGTTACCCTACTACTTAGGGGGTTA
AGGCTCACCATCTTAGATCTGCTCCACTACTGCTGAGGGAGACAAGATCTGTAATTCTCCAGCCT
GTTACCCTACTGCTTAGGGGGTTAAGGCTCACCATCTTAGATCTGCT
Found at i:93664907 original size:89 final size:89
Alignment explanation
Indices: 93664650--93665069 Score: 575
Period size: 89 Copynumber: 4.8 Consensus size: 89
93664640 TGTAATTCGG
* * * *
93664650 CCACTACTGCTTAGGGAGACAAGGTCTATAA-T-T-CGGCCTGTTACCCTACTGCTTAGGGTGTT
1 CCACTACTGCTTAGGGAGACAAGATCTGTAATTCTCCAGCCTGTTACCCTACTGCTTAGGGGGTT
*
93664712 AAGGCTCACCATCTTTGATCTGCT
66 AAGGCTCACCATCTTAGATCTGCT
*
93664736 CCACTACTGCTTAGGGAGACAAGATCTGTAA-T-T-CGGCCTGTTACCCTACTGCTTAGGGGGTT
1 CCACTACTGCTTAGGGAGACAAGATCTGTAATTCTCCAGCCTGTTACCCTACTGCTTAGGGGGTT
* *
93664798 AAGGCTCACCGTCTTCGATCTGCT
66 AAGGCTCACCATCTTAGATCTGCT
* * *
93664822 CTACTATTGCTTAGGGAGACAAGATCTGTAATTCTCCAGCCTGTTACCCTACTACTTAGGGGGTT
1 CCACTACTGCTTAGGGAGACAAGATCTGTAATTCTCCAGCCTGTTACCCTACTGCTTAGGGGGTT
* * *
93664887 AAGGCCCATCATCTTAGATCTGTT
66 AAGGCTCACCATCTTAGATCTGCT
* * *
93664911 CCCCTACTGCTGAGGGAGACAAGATCTGTAATTCTCCAGCTTGTTACCCTACTGCTTAGGGGGTT
1 CCACTACTGCTTAGGGAGACAAGATCTGTAATTCTCCAGCCTGTTACCCTACTGCTTAGGGGGTT
* *
93664976 AAGGCTCATCATCTTAGATCTGTT
66 AAGGCTCACCATCTTAGATCTGCT
* * * * *
93665000 CC-CCACTGCTTAGGGAGACAAGATTTGTATTTCTCCAGCCTGTTACCCTACTACTTTGGGGGTT
1 CCACTACTGCTTAGGGAGACAAGATCTGTAATTCTCCAGCCTGTTACCCTACTGCTTAGGGGGTT
93665064 AAGGCT
66 AAGGCT
93665070 TACAAATTCA
Statistics
Matches: 303, Mismatches: 28, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
86 110 0.36
87 1 0.00
88 62 0.20
89 130 0.43
ACGTcount: A:0.21, C:0.25, G:0.22, T:0.31
Consensus pattern (89 bp):
CCACTACTGCTTAGGGAGACAAGATCTGTAATTCTCCAGCCTGTTACCCTACTGCTTAGGGGGTT
AAGGCTCACCATCTTAGATCTGCT
Found at i:93664916 original size:44 final size:44
Alignment explanation
Indices: 93664862--93665014 Score: 139
Period size: 44 Copynumber: 3.5 Consensus size: 44
93664852 ATTCTCCAGC
*
93664862 CTGTTACCCTACTACTTAGGGGGTTAAGGCCCATCATCTTAGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCATCTTAGAT
* * * ** ** ** * * *
93664906 CTGTTCCCCTACTGCTGAGGGAGACAAGATCTGTAATTCTCCAGCT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCA-TCT-TAGAT
*
93664952 -TGTTACCCTACTGCTTAGGGGGTTAAGGCTCATCATCTTAGAT
1 CTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCATCTTAGAT
*
93664995 CTGTT-CCCCACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGG
93665015 AGACAAGATT
Statistics
Matches: 79, Mismatches: 27, Indels: 7
0.70 0.24 0.06
Matches are distributed among these distances:
43 17 0.22
44 32 0.41
45 27 0.34
46 3 0.04
ACGTcount: A:0.20, C:0.26, G:0.22, T:0.31
Consensus pattern (44 bp):
CTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCATCTTAGAT
Found at i:93673008 original size:9 final size:9
Alignment explanation
Indices: 93672990--93673033 Score: 63
Period size: 9 Copynumber: 5.0 Consensus size: 9
93672980 TGTAATGTTG
93672990 ATGC-ATGA
1 ATGCAATGA
93672998 ATGCAATGA
1 ATGCAATGA
*
93673007 ATGCAATAA
1 ATGCAATGA
93673016 ATGCAATGA
1 ATGCAATGA
*
93673025 ATACAATGA
1 ATGCAATGA
93673034 CTGTAAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
8 4 0.12
9 28 0.88
ACGTcount: A:0.48, C:0.11, G:0.18, T:0.23
Consensus pattern (9 bp):
ATGCAATGA
Found at i:93673044 original size:27 final size:26
Alignment explanation
Indices: 93672990--93673046 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 26
93672980 TGTAATGTTG
* *
93672990 ATGCATGAATGCAATGAATGCAATAA
1 ATGCATGAATACAATGAATGCAAAAA
* *
93673016 ATGCAATGAATACAATGACTGTAAAAA
1 ATGC-ATGAATACAATGAATGCAAAAA
93673043 ATGC
1 ATGC
93673047 GTTGATTCTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 4 0.15
27 22 0.85
ACGTcount: A:0.47, C:0.12, G:0.18, T:0.23
Consensus pattern (26 bp):
ATGCATGAATACAATGAATGCAAAAA
Found at i:93676884 original size:3 final size:3
Alignment explanation
Indices: 93676876--93677109 Score: 104
Period size: 3 Copynumber: 78.7 Consensus size: 3
93676866 TATAGTAAAA
** * * *
93676876 AAT AAT AAT -AT GTT AAT AAA AAT AAC AAT AAT AGT AAT AAT AA- AA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * *
93676921 AAGT TAT AGT AAT AAA AAT AAA AAT AAC AAT AAT AGT AAT AGT AAT
1 AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * *
93676967 AAT GAT AGT AAT AAT AAT GAT AAT -AT AAC AAT AAC AGT AAT ATAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT
* * * * * * *
93677012 AAA AAGG AAT AAT AAT AGT -AT AGT AAA AAT AAT AAT AAT -GT ATT
1 AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
93677056 AAT AAG AAT GAT AAT AAT AA- AAT GAGAT TAT AAT AAT AAT ATT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT -A-AT AAT AAT AAT AAT AAT AAT
*
93677102 AAA AAT AA
1 AAT AAT AA
93677110 ACATAAAAGA
Statistics
Matches: 163, Mismatches: 57, Indels: 22
0.67 0.24 0.09
Matches are distributed among these distances:
2 12 0.07
3 142 0.87
4 7 0.04
5 2 0.01
ACGTcount: A:0.61, C:0.02, G:0.08, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:93676941 original size:47 final size:46
Alignment explanation
Indices: 93676890--93677077 Score: 159
Period size: 47 Copynumber: 4.0 Consensus size: 46
93676880 ATAATATGTT
*
93676890 AATAAAAATAACAATAATAGTAATAATAAAAAAGTTATAGTAATAAA
1 AATAAAAATAACAATAATAGTAATAATAAAAAA-TGATAGTAATAAA
* * *
93676937 AATAAAAATAACAATAATAGTAATAGT-AATAATGATAGTAATAAT
1 AATAAAAATAACAATAATAGTAATAATAAAAAATGATAGTAATAAA
* * * * *
93676982 AATGATAATATAACAATAACAGTAAT-ATATAAAAAGGAATAATAATAGTAT
1 AAT-A-AAAATAACAATAATAGTAATAATA-AAAAATG-ATAGTAATA--AA
* * * * *
93677033 AGTAAAAATAATAATAAT-GTATTAAT-AAGAATGATAATAATAAA
1 AATAAAAATAACAATAATAGTAATAATAAAAAATGATAGTAATAAA
93677077 A
1 A
93677078 TGAGATTATA
Statistics
Matches: 115, Mismatches: 18, Indels: 19
0.76 0.12 0.12
Matches are distributed among these distances:
44 2 0.02
45 14 0.12
46 15 0.13
47 49 0.43
48 9 0.08
49 21 0.18
50 1 0.01
51 4 0.03
ACGTcount: A:0.62, C:0.02, G:0.09, T:0.28
Consensus pattern (46 bp):
AATAAAAATAACAATAATAGTAATAATAAAAAATGATAGTAATAAA
Found at i:93677017 original size:94 final size:93
Alignment explanation
Indices: 93676897--93677103 Score: 220
Period size: 94 Copynumber: 2.2 Consensus size: 93
93676887 GTTAATAAAA
* ** *
93676897 ATAACAATAATAGTAATAATAAAAAAGTTATAGTAATA-AAAATAAAAATAACAATAATAGTAAT
1 ATAACAATAACAGTAATAATAAAAAAGGAATAATAATAGAAAATAAAAATAACAATAAT-GTAAT
* * * *
93676961 AGTAATAATGATAGTAATAATAATGATAAT
65 AATAAGAATGATAATAATAA-AATGAGAAT
* * * *
93676991 ATAACAATAACAGTAAT-ATATAAAAAGGAATAATAATAGTATAGTAAAAATAATAATAATGTAT
1 ATAACAATAACAGTAATAATA-AAAAAGGAATAATAATAG-AAAATAAAAATAACAATAATGTAA
*
93677055 TAATAAGAATGATAATAATAAAATGAGATT
64 TAATAAGAATGATAATAATAAAATGAGAAT
* * *
93677085 ATAATAATAATATTAATAA
1 ATAACAATAACAGTAATAA
93677104 AAATAAACAT
Statistics
Matches: 93, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
93 3 0.03
94 51 0.55
95 22 0.24
96 17 0.18
ACGTcount: A:0.60, C:0.02, G:0.09, T:0.29
Consensus pattern (93 bp):
ATAACAATAACAGTAATAATAAAAAAGGAATAATAATAGAAAATAAAAATAACAATAATGTAATA
ATAAGAATGATAATAATAAAATGAGAAT
Found at i:93677058 original size:14 final size:15
Alignment explanation
Indices: 93677041--93677103 Score: 69
Period size: 14 Copynumber: 4.4 Consensus size: 15
93677031 ATAGTAAAAA
93677041 TAATAATAATG-TAT
1 TAATAATAATGATAT
* *
93677055 TAATAAGAATGATAA
1 TAATAATAATGATAT
*
93677070 TAATAA-AATGAGAT
1 TAATAATAATGATAT
*
93677084 T-ATAATAATAATAT
1 TAATAATAATGATAT
93677098 TAATAA
1 TAATAA
93677104 AAATAAACAT
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
13 4 0.10
14 24 0.60
15 12 0.30
ACGTcount: A:0.57, C:0.00, G:0.08, T:0.35
Consensus pattern (15 bp):
TAATAATAATGATAT
Found at i:93681550 original size:19 final size:19
Alignment explanation
Indices: 93681526--93681569 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
93681516 TACAAACAAC
93681526 ACAACATCA-ACCCAAATAA
1 ACAACATCAGACCCAAA-AA
* *
93681545 ACAACATTAGTCCCAAAAA
1 ACAACATCAGACCCAAAAA
93681564 ACAACA
1 ACAACA
93681570 AAATCAATAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.57, C:0.30, G:0.02, T:0.11
Consensus pattern (19 bp):
ACAACATCAGACCCAAAAA
Found at i:93683523 original size:28 final size:28
Alignment explanation
Indices: 93683492--93683547 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
93683482 GACAGGTAGT
93683492 AAAGGCTGAACGCGTTGCGACAAACTTA
1 AAAGGCTGAACGCGTTGCGACAAACTTA
*
93683520 AAAGGCTGAACGCGTTGCGACATACTTA
1 AAAGGCTGAACGCGTTGCGACAAACTTA
93683548 GAATTTTATC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (28 bp):
AAAGGCTGAACGCGTTGCGACAAACTTA
Found at i:93686561 original size:45 final size:45
Alignment explanation
Indices: 93686510--93686595 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
93686500 AGAAGTTTCG
93686510 TGGAATTTGCTGAA-GAATTTAAGTCAGTCATAGGGTTTACCTTCA
1 TGGAATTTGCT-AAGGAATTTAAGTCAGTCATAGGGTTTACCTTCA
93686555 TGGAATTTGCTAAGGAATTTAAGTCAGTCATAGGGTTTACC
1 TGGAATTTGCTAAGGAATTTAAGTCAGTCATAGGGTTTACC
93686596 ATGGATGGTA
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
44 2 0.05
45 38 0.95
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35
Consensus pattern (45 bp):
TGGAATTTGCTAAGGAATTTAAGTCAGTCATAGGGTTTACCTTCA
Found at i:93692598 original size:38 final size:38
Alignment explanation
Indices: 93692547--93692697 Score: 187
Period size: 38 Copynumber: 4.0 Consensus size: 38
93692537 AATAAGTCTA
* * * * *
93692547 AATAACACCAGCACTAAGCCTGCTAAGTACTAAGCCAG
1 AATAACACTAGCACTAAGCCTACTAGGCACTAAGCCTG
* *
93692585 AATAACACTAGCACTAAGCTTACTAGGCACAAAGCCTG
1 AATAACACTAGCACTAAGCCTACTAGGCACTAAGCCTG
*
93692623 AATAACAC-CGACACTAAGCCTACTAGGCACTAAGCCTG
1 AATAACACTAG-CACTAAGCCTACTAGGCACTAAGCCTG
* * *
93692661 AATAACACTGGCATTAAGCCTGCTAGGCACTAAGCCT
1 AATAACACTAGCACTAAGCCTACTAGGCACTAAGCCT
93692698 ACTAGGCACA
Statistics
Matches: 98, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
37 1 0.01
38 96 0.98
39 1 0.01
ACGTcount: A:0.37, C:0.28, G:0.17, T:0.18
Consensus pattern (38 bp):
AATAACACTAGCACTAAGCCTACTAGGCACTAAGCCTG
Found at i:93692655 original size:16 final size:16
Alignment explanation
Indices: 93692634--93692713 Score: 70
Period size: 16 Copynumber: 4.6 Consensus size: 16
93692624 ATAACACCGA
93692634 CACTAAGCCTACTAGG
1 CACTAAGCCTACTAGG
*
93692650 CACTAAGCCTGAATAACACTGG
1 CACTAAGCCT-ACT---A--GG
* *
93692672 CATTAAGCCTGCTAGG
1 CACTAAGCCTACTAGG
93692688 CACTAAGCCTACTAGG
1 CACTAAGCCTACTAGG
*
93692704 CACAAAGCCT
1 CACTAAGCCT
93692714 GAGTAACATC
Statistics
Matches: 51, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
16 35 0.69
17 2 0.04
18 1 0.02
20 1 0.02
21 1 0.02
22 11 0.22
ACGTcount: A:0.33, C:0.30, G:0.19, T:0.19
Consensus pattern (16 bp):
CACTAAGCCTACTAGG
Found at i:93692692 original size:54 final size:54
Alignment explanation
Indices: 93692634--93692751 Score: 184
Period size: 54 Copynumber: 2.2 Consensus size: 54
93692624 ATAACACCGA
* *
93692634 CACTAAGCCTACTAGGCACTAAGCCTGAATAACA-CTGGCATTAAGCCTGCTAGG
1 CACTAAGCCTACTAGGCACAAAGCCTGAATAACATC-GGCACTAAGCCTGCTAGG
* *
93692688 CACTAAGCCTACTAGGCACAAAGCCTGAGTAACATCGGTACTAAGCCTGCTAGG
1 CACTAAGCCTACTAGGCACAAAGCCTGAATAACATCGGCACTAAGCCTGCTAGG
93692742 CACTAAGCCT
1 CACTAAGCCT
93692752 GAATAACACT
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
54 58 0.98
55 1 0.02
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.19
Consensus pattern (54 bp):
CACTAAGCCTACTAGGCACAAAGCCTGAATAACATCGGCACTAAGCCTGCTAGG
Found at i:93692693 original size:92 final size:92
Alignment explanation
Indices: 93692595--93692782 Score: 295
Period size: 92 Copynumber: 2.0 Consensus size: 92
93692585 AATAACACTA
*
93692595 GCACTAAGCTTACTAGGCACAAAGCCTGAATAACACCGACACTAAGCCTACTAGGCACTAAGCCT
1 GCACTAAGCCTACTAGGCACAAAGCCTGAATAACACCGACACTAAGCCTACTAGGCACTAAGCCT
* *
93692660 GAATAACACTGGCATTAAGCCTGCTAG
66 GAATAACACTGACACTAAGCCTGCTAG
* * ** *
93692687 GCACTAAGCCTACTAGGCACAAAGCCTGAGTAACATCGGTACTAAGCCTGCTAGGCACTAAGCCT
1 GCACTAAGCCTACTAGGCACAAAGCCTGAATAACACCGACACTAAGCCTACTAGGCACTAAGCCT
*
93692752 GAATAACACTGACACTAAGCTTGCTAG
66 GAATAACACTGACACTAAGCCTGCTAG
93692779 GCAC
1 GCAC
93692783 AAAGTCTGAA
Statistics
Matches: 87, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
92 87 1.00
ACGTcount: A:0.34, C:0.28, G:0.20, T:0.19
Consensus pattern (92 bp):
GCACTAAGCCTACTAGGCACAAAGCCTGAATAACACCGACACTAAGCCTACTAGGCACTAAGCCT
GAATAACACTGACACTAAGCCTGCTAG
Found at i:93692731 original size:38 final size:38
Alignment explanation
Indices: 93692688--93692795 Score: 137
Period size: 38 Copynumber: 2.8 Consensus size: 38
93692678 GCCTGCTAGG
* * *
93692688 CACTAAGCCTACTAGGCACAAAGCCTGAGTAACA-TCGG
1 CACTAAGCCTGCTAGGCACAAAGCCTGAATAACACT-GA
* *
93692726 TACTAAGCCTGCTAGGCACTAAGCCTGAATAACACTGA
1 CACTAAGCCTGCTAGGCACAAAGCCTGAATAACACTGA
* *
93692764 CACTAAGCTTGCTAGGCACAAAGTCTGAATAA
1 CACTAAGCCTGCTAGGCACAAAGCCTGAATAA
93692796 TAGTACGATT
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
38 59 0.98
39 1 0.02
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.19
Consensus pattern (38 bp):
CACTAAGCCTGCTAGGCACAAAGCCTGAATAACACTGA
Found at i:93697925 original size:12 final size:12
Alignment explanation
Indices: 93697908--93697940 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
93697898 CGGCCCGCCC
93697908 ATATTAATTTTT
1 ATATTAATTTTT
93697920 ATATT-ATTTTT
1 ATATTAATTTTT
93697931 ATA-TAATTTT
1 ATATTAATTTT
93697941 AAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:93698197 original size:11 final size:11
Alignment explanation
Indices: 93698163--93698201 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
93698153 CAATAACAAC
*
93698163 AAAATAGTAGC
1 AAAATAGTAGT
* *
93698174 AACATAATAGT
1 AAAATAGTAGT
93698185 AAAATAGTAGT
1 AAAATAGTAGT
93698196 AAAATA
1 AAAATA
93698202 CGGAGAAAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.59, C:0.05, G:0.13, T:0.23
Consensus pattern (11 bp):
AAAATAGTAGT
Found at i:93713669 original size:14 final size:13
Alignment explanation
Indices: 93713637--93713662 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
93713627 TCTAAGTAAA
93713637 AAAAATTCTTTTC
1 AAAAATTCTTTTC
93713650 AAAAATTCTTTTC
1 AAAAATTCTTTTC
93713663 TCTAAATAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.46
Consensus pattern (13 bp):
AAAAATTCTTTTC
Found at i:93725778 original size:19 final size:19
Alignment explanation
Indices: 93725756--93725793 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
93725746 TAAAAAGCCT
*
93725756 ATAAAATTTAAAAAAATAA
1 ATAAAAATTAAAAAAATAA
*
93725775 ATAAAAATTAAAAATATAA
1 ATAAAAATTAAAAAAATAA
93725794 GTAATAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (19 bp):
ATAAAAATTAAAAAAATAA
Found at i:93725982 original size:25 final size:25
Alignment explanation
Indices: 93725966--93726015 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
93725956 TTTTAATTAA
93725966 TTTATATATTTTATTTTTTAAAAAT
1 TTTATATATTTTATTTTTTAAAAAT
*
93725991 TTTATATATTTT-TTTATTTCAAAAT
1 TTTATATATTTTATTT-TTTAAAAAT
93726016 AATAATATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 3 0.13
25 20 0.87
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (25 bp):
TTTATATATTTTATTTTTTAAAAAT
Found at i:93726761 original size:22 final size:22
Alignment explanation
Indices: 93726732--93726791 Score: 54
Period size: 22 Copynumber: 2.8 Consensus size: 22
93726722 TAAAATTAAT
93726732 TAATTATAATAACATAT-GAAA
1 TAATTATAATAACATATGGAAA
* *
93726753 TAATGTAT-ACAACTTATGGAAA
1 TAAT-TATAATAACATATGGAAA
*
93726775 TAATAAATAAT-ACATAT
1 TAAT-TATAATAACATAT
93726792 TAAAATAAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
21 11 0.37
22 18 0.60
23 1 0.03
ACGTcount: A:0.53, C:0.07, G:0.07, T:0.33
Consensus pattern (22 bp):
TAATTATAATAACATATGGAAA
Found at i:93732505 original size:48 final size:48
Alignment explanation
Indices: 93732375--93732517 Score: 151
Period size: 48 Copynumber: 3.0 Consensus size: 48
93732365 ATTCGAGAGT
* * * * *
93732375 CTCGCACCCTAAGTGCCTATCTCATGGCCCGAAGCCAAATCTATGTAA
1 CTCGCAACCGAAGTGCCGATATCATGGCCCGAAGCCAAATCAATGTAA
* * ** *
93732423 CTCGCAACTGAAGTGCCGATATCATTGCTTGAAGCGAAATCAATGTAA
1 CTCGCAACCGAAGTGCCGATATCATGGCCCGAAGCCAAATCAATGTAA
* * * * *
93732471 CTTGCACCCGAAGTGTCGGTATCATGGCCCGAAGCTAAATCAATGTA
1 CTCGCAACCGAAGTGCCGATATCATGGCCCGAAGCCAAATCAATGTA
93732518 TTCCCTAATG
Statistics
Matches: 76, Mismatches: 19, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
48 76 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (48 bp):
CTCGCAACCGAAGTGCCGATATCATGGCCCGAAGCCAAATCAATGTAA
Found at i:93735659 original size:155 final size:155
Alignment explanation
Indices: 93735380--93735986 Score: 741
Period size: 155 Copynumber: 4.0 Consensus size: 155
93735370 ATTAGTGGCG
* * *
93735380 CTTTATCAAAAACGCCGCTATAGG-TTGAGTATTAG-AGGCGTTTTTAAGAAAGGGCCGTTATAG
1 CTTTATCAAAAACGCCGCTATAGGTTTGAGTATTAGCA-GTGTTTTTAAGAAAGCGCCGCTATAG
* * * * *
93735443 GTCGACCTATAGCGGCGTTTTTATAAAAATGCCACTAAAAGATTAAGTCGAACGACGTCGTTTAT
65 GTCGACCTATAGCGGCGTTTTTATAAAAACGCCACTAAAAGATTAAGCCAAACGGCATCGTTTAT
* *
93735508 TGTGAGCTTCAGTGTCAATAGTGGCG
130 TGTGAGCTTCAGTGTCAATAGCGGCA
* * *** * * * * *
93735534 CTTTATTAAAAACGCCGCTA-ATGCTCAAACCTA-TAGCGGTGTTTTTGATAAAGCGCCACTATA
1 CTTTATCAAAAACGCCGCTATA-GGTTTGA-GTATTAGCAGTGTTTTTAAGAAAGCGCCGCTATA
* * *
93735597 GGTCGACCTATAGCGGCGTTTTTATAAAAACACCATTAAAAAATTAAGCCAAACGGCATCGTTTA
64 GGTCGACCTATAGCGGCGTTTTTATAAAAACGCCACTAAAAGATTAAGCCAAACGGCATCGTTTA
93735662 TTGTGAGCTTCAGTGTCAATAGCGGCA
129 TTGTGAGCTTCAGTGTCAATAGCGGCA
* * * *
93735689 CTTTATCAAAAACACCACTATAGGTTTGAGTATTAGCAATATTTTTAAGAAAGCGCCGCTATAGG
1 CTTTATCAAAAACGCCGCTATAGGTTTGAGTATTAGCAGTGTTTTTAAGAAAGCGCCGCTATAGG
* * * * *
93735754 TCTACC--T-----CATTTTTGTAAAAACGCCACTAATAGATTAAGCCGAACGGCATCGTTTATT
66 TCGACCTATAGCGGCGTTTTTATAAAAACGCCACTAAAAGATTAAGCCAAACGGCATCGTTTATT
93735812 GTGAGCTTCAGTGTCAATAGCGGCA
131 GTGAGCTTCAGTGTCAATAGCGGCA
* *
93735837 CTTTATCAAAAACGCCGCTATAGGTTTGAGTATTAGTAGCGTTTTTAAGAAAGCGCCGCTATAGG
1 CTTTATCAAAAACGCCGCTATAGGTTTGAGTATTAGCAGTGTTTTTAAGAAAGCGCCGCTATAGG
* * * **
93735902 TCGACCTATTGCGGCGTTTGTATAAAAACGCCGCTAAAAGATTAAGCCAAACGGTGTCGTTTATT
66 TCGACCTATAGCGGCGTTTTTATAAAAACGCCACTAAAAGATTAAGCCAAACGGCATCGTTTATT
* *
93735967 TTGAGCTTCAGTGGCAATAG
131 GTGAGCTTCAGTGTCAATAG
93735987 ATCTAAACTA
Statistics
Matches: 378, Mismatches: 62, Indels: 25
0.81 0.13 0.05
Matches are distributed among these distances:
148 133 0.35
150 1 0.00
153 2 0.01
154 22 0.06
155 217 0.57
156 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (155 bp):
CTTTATCAAAAACGCCGCTATAGGTTTGAGTATTAGCAGTGTTTTTAAGAAAGCGCCGCTATAGG
TCGACCTATAGCGGCGTTTTTATAAAAACGCCACTAAAAGATTAAGCCAAACGGCATCGTTTATT
GTGAGCTTCAGTGTCAATAGCGGCA
Found at i:93735838 original size:148 final size:147
Alignment explanation
Indices: 93735615--93735986 Score: 501
Period size: 148 Copynumber: 2.5 Consensus size: 147
93735605 TATAGCGGCG
* * * *
93735615 TTTTTATAAAAACACCATTAAAAAATTAAGCCAAACGGCATCGTTTATTGTGAGCTTCAGTGTCA
1 TTTTTGTAAAAACGCCACTAAAAGATTAAGCCAAACGGCATCGTTTATTGTGAGCTTCAGTGTCA
*
93735680 ATAGCGGCACTTTATCAAAAACACCACTATAGGTTTGAGTATTAGCAATATTTTTAAGAAAGCGC
66 ATAGCGGCACTTTATCAAAAACACCACTATAGGTTTGAGTATTAGCAACATTTTTAAGAAAGCGC
*
93735745 CGCTATAGGTCTACCTCA
131 CGCTATAGGTCGACCT-A
* *
93735763 TTTTTGTAAAAACGCCACTAATAGATTAAGCCGAACGGCATCGTTTATTGTGAGCTTCAGTGTCA
1 TTTTTGTAAAAACGCCACTAAAAGATTAAGCCAAACGGCATCGTTTATTGTGAGCTTCAGTGTCA
* * * * *
93735828 ATAGCGGCACTTTATCAAAAACGCCGCTATAGGTTTGAGTATTAGTAGCGTTTTTAAGAAAGCGC
66 ATAGCGGCACTTTATCAAAAACACCACTATAGGTTTGAGTATTAGCAACATTTTTAAGAAAGCGC
93735893 CGCTATAGGTCGACCTA
131 CGCTATAGGTCGACCTA
* ** *
93735910 TTGCGGCGTTTGTATAAAAACGCCGCTAAAAGATTAAGCCAAACGGTGTCGTTTATTTTGAGCTT
1 TT------TTTG--TAAAAACGCCACTAAAAGATTAAGCCAAACGGCATCGTTTATTGTGAGCTT
*
93735975 CAGTGGCAATAG
58 CAGTGTCAATAG
93735987 ATCTAAACTA
Statistics
Matches: 196, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
147 3 0.02
148 133 0.68
153 4 0.02
155 56 0.29
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (147 bp):
TTTTTGTAAAAACGCCACTAAAAGATTAAGCCAAACGGCATCGTTTATTGTGAGCTTCAGTGTCA
ATAGCGGCACTTTATCAAAAACACCACTATAGGTTTGAGTATTAGCAACATTTTTAAGAAAGCGC
CGCTATAGGTCGACCTA
Found at i:93736839 original size:8 final size:7
Alignment explanation
Indices: 93736792--93736839 Score: 51
Period size: 7 Copynumber: 6.4 Consensus size: 7
93736782 AGGTTTATGC
93736792 ATGGTTT
1 ATGGTTT
*
93736799 AGGGTATAT
1 ATGGT-T-T
93736808 ATGGTTT
1 ATGGTTT
*
93736815 AAGGTTT
1 ATGGTTT
93736822 ATGGTTT
1 ATGGTTT
93736829 ATGGATTT
1 ATGG-TTT
93736837 ATG
1 ATG
93736840 ACGAGTTAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
7 21 0.62
8 8 0.24
9 5 0.15
ACGTcount: A:0.23, C:0.00, G:0.29, T:0.48
Consensus pattern (7 bp):
ATGGTTT
Found at i:93736915 original size:15 final size:14
Alignment explanation
Indices: 93736891--93736925 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
93736881 AGGGATTATG
93736891 GGTTTAGGGTTTAA
1 GGTTTAGGGTTTAA
*
93736905 GGTTTAGGGGTTTAT
1 GGTTTA-GGGTTTAA
93736920 GGTTTA
1 GGTTTA
93736926 TGAGTTAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.46
Consensus pattern (14 bp):
GGTTTAGGGTTTAA
Found at i:93737030 original size:14 final size:14
Alignment explanation
Indices: 93737001--93737062 Score: 61
Period size: 15 Copynumber: 4.3 Consensus size: 14
93736991 TCAAGGGCTA
*
93737001 AAGGTTTAGGGATTT
1 AAGGTTTATGG-TTT
93737016 AAGGTTTATGGTTT
1 AAGGTTTATGGTTT
* *
93737030 AAGGGTTATGATTT
1 AAGGTTTATGGTTT
* *
93737044 AAAGGTTGATGGTCT
1 -AAGGTTTATGGTTT
93737059 AAGG
1 AAGG
93737063 GTTAAGGGGA
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
14 19 0.49
15 20 0.51
ACGTcount: A:0.27, C:0.02, G:0.32, T:0.39
Consensus pattern (14 bp):
AAGGTTTATGGTTT
Found at i:93737048 original size:29 final size:28
Alignment explanation
Indices: 93737011--93737066 Score: 85
Period size: 29 Copynumber: 2.0 Consensus size: 28
93737001 AAGGTTTAGG
* *
93737011 GATTTAAGGTTTATGGTTTAAGGGTTAT
1 GATTTAAGGTTGATGGTCTAAGGGTTAT
93737039 GATTTAAAGGTTGATGGTCTAAGGGTTA
1 GATTT-AAGGTTGATGGTCTAAGGGTTA
93737067 AGGGGACATG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.20
29 20 0.80
ACGTcount: A:0.27, C:0.02, G:0.30, T:0.41
Consensus pattern (28 bp):
GATTTAAGGTTGATGGTCTAAGGGTTAT
Found at i:93737129 original size:14 final size:14
Alignment explanation
Indices: 93737074--93737129 Score: 51
Period size: 14 Copynumber: 3.9 Consensus size: 14
93737064 TTAAGGGGAC
*
93737074 ATGGTTTAGGGTTT
1 ATGGTTTAAGGTTT
*
93737088 A-GTGTTTAAAGTTT
1 ATG-GTTTAAGGTTT
* *
93737102 AGGGATTAATGGTTT
1 ATGGTTTAA-GGTTT
93737117 ATGGTTTAAGGTT
1 ATGGTTTAAGGTT
93737130 GAGGGGTTAG
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
13 1 0.03
14 20 0.61
15 12 0.36
ACGTcount: A:0.23, C:0.00, G:0.30, T:0.46
Consensus pattern (14 bp):
ATGGTTTAAGGTTT
Found at i:93737274 original size:80 final size:80
Alignment explanation
Indices: 93737162--93737342 Score: 202
Period size: 80 Copynumber: 2.3 Consensus size: 80
93737152 CATGGTTTAG
* * * * *
93737162 GGTTTAGTGTTTAGTGTTTAAATTTTAAGGATTAAAGGTTAATAGTTTAGGGTTTA-GTAGTTTA
1 GGTTTAGGGTTTAGGGTTTAAACTTTAAGGATTAAAGGTTAATAGTTTAAGGTTGATG-AGTTTA
*
93737226 GAGGTTAAGAGAATAT
65 GAGGTTAAGAGAACAT
* * * * *
93737242 GGTTTAGGGTTTAGGGTTTAAACTTTAGGGATTAATGGTTTATTGTTTAAGGTTGATGGGTTTAG
1 GGTTTAGGGTTTAGGGTTTAAACTTTAAGGATTAAAGGTTAATAGTTTAAGGTTGATGAGTTTAG
* * *
93737307 GGGTTAAGGGGACAT
66 AGGTTAAGAGAACAT
* *
93737322 GGTTTAGGGTTGAGGGGTTAA
1 GGTTTAGGGTTTAGGGTTTAA
93737343 GGGGACATGG
Statistics
Matches: 84, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
80 83 0.99
81 1 0.01
ACGTcount: A:0.26, C:0.01, G:0.33, T:0.40
Consensus pattern (80 bp):
GGTTTAGGGTTTAGGGTTTAAACTTTAAGGATTAAAGGTTAATAGTTTAAGGTTGATGAGTTTAG
AGGTTAAGAGAACAT
Found at i:93737341 original size:29 final size:30
Alignment explanation
Indices: 93737299--93737367 Score: 113
Period size: 29 Copynumber: 2.3 Consensus size: 30
93737289 TAAGGTTGAT
*
93737299 GGGTTTAGGGGTTAAGGGGACAT-GGTTTA
1 GGGTTTAGGGGTTAAGGGGACATGGGTTAA
*
93737328 GGGTTGAGGGGTTAAGGGGACATGGGTTAA
1 GGGTTTAGGGGTTAAGGGGACATGGGTTAA
93737358 GGGTTTAGGG
1 GGGTTTAGGG
93737368 TAATTAGTGT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
29 22 0.61
30 14 0.39
ACGTcount: A:0.20, C:0.03, G:0.49, T:0.28
Consensus pattern (30 bp):
GGGTTTAGGGGTTAAGGGGACATGGGTTAA
Found at i:93737354 original size:15 final size:15
Alignment explanation
Indices: 93737307--93737360 Score: 56
Period size: 15 Copynumber: 3.7 Consensus size: 15
93737297 ATGGGTTTAG
93737307 GGGTTAAGGGGACAT
1 GGGTTAAGGGGACAT
* *** *
93737322 -GGTTTAGGGTTGAG
1 GGGTTAAGGGGACAT
93737336 GGGTTAAGGGGACAT
1 GGGTTAAGGGGACAT
93737351 GGGTTAAGGG
1 GGGTTAAGGG
93737361 TTTAGGGTAA
Statistics
Matches: 28, Mismatches: 10, Indels: 2
0.70 0.25 0.05
Matches are distributed among these distances:
14 9 0.32
15 19 0.68
ACGTcount: A:0.22, C:0.04, G:0.50, T:0.24
Consensus pattern (15 bp):
GGGTTAAGGGGACAT
Found at i:93737515 original size:26 final size:24
Alignment explanation
Indices: 93737479--93737529 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 24
93737469 TATATTAAAT
93737479 AATTTCAAATTTT-AATGATTTCAA
1 AATTTCAAATTTTCAA-GATTTCAA
93737503 AATTTCAATAATTTTCAAGATTTCAA
1 AATTTC-A-AATTTTCAAGATTTCAA
93737529 A
1 A
93737530 TTTTATGTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
24 6 0.25
25 1 0.04
26 15 0.62
27 2 0.08
ACGTcount: A:0.43, C:0.10, G:0.04, T:0.43
Consensus pattern (24 bp):
AATTTCAAATTTTCAAGATTTCAA
Found at i:93737520 original size:18 final size:17
Alignment explanation
Indices: 93737476--93737528 Score: 63
Period size: 18 Copynumber: 3.1 Consensus size: 17
93737466 ATATATATTA
*
93737476 AATAATTTC-AAATTTT
1 AATAATTTCAAAATTTC
*
93737492 AATGATTTCAAAATTTC
1 AATAATTTCAAAATTTC
*
93737509 AATAATTTTCAAGATTTC
1 AATAA-TTTCAAAATTTC
93737527 AA
1 AA
93737529 ATTTTATGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
16 8 0.26
17 10 0.32
18 13 0.42
ACGTcount: A:0.43, C:0.09, G:0.04, T:0.43
Consensus pattern (17 bp):
AATAATTTCAAAATTTC
Found at i:93737681 original size:18 final size:17
Alignment explanation
Indices: 93737648--93737680 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
93737638 ATAACGTATT
93737648 GTTTTTTAATTTATATA
1 GTTTTTTAATTTATATA
93737665 GTTTTTT-ATTTATATA
1 GTTTTTTAATTTATATA
93737681 TTAAATAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (17 bp):
GTTTTTTAATTTATATA
Found at i:93738727 original size:10 final size:10
Alignment explanation
Indices: 93738695--93738733 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
93738685 CTGCACTTTT
*
93738695 TTTTTTTCCA
1 TTTTTTTCAA
93738705 TTTTTGTTCCAA
1 TTTTT-TT-CAA
93738717 TTTTTTTCAA
1 TTTTTTTCAA
93738727 TTTTTTT
1 TTTTTTT
93738734 GAAGTTTGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
10 15 0.58
11 4 0.15
12 7 0.27
ACGTcount: A:0.13, C:0.13, G:0.03, T:0.72
Consensus pattern (10 bp):
TTTTTTTCAA
Found at i:93739109 original size:83 final size:84
Alignment explanation
Indices: 93739007--93739163 Score: 253
Period size: 84 Copynumber: 1.9 Consensus size: 84
93738997 TGTAGTATTT
* * *
93739007 TAGTATTTCAGTATTTCAATTCATT-AACTCTTTCTGATTAACATGCCGTATGAACTCATACTTC
1 TAGTATTTCAGTATTTCAATTCATTAAACTCTCTCTGATGAACATGCCGTATGAACTAATACTTC
93739071 TCCATTTGCTTTTTTTTGG
66 TCCATTTGCTTTTTTTTGG
* *
93739090 TAGTATTTTAGTATTTCAATTCATTAAACTCTCTCTGATGAACATGCTGTATGAACTAATACTTC
1 TAGTATTTCAGTATTTCAATTCATTAAACTCTCTCTGATGAACATGCCGTATGAACTAATACTTC
*
93739155 TCGATTTGC
66 TCCATTTGC
93739164 ATTTGAAGTA
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
83 24 0.36
84 43 0.64
ACGTcount: A:0.25, C:0.18, G:0.11, T:0.45
Consensus pattern (84 bp):
TAGTATTTCAGTATTTCAATTCATTAAACTCTCTCTGATGAACATGCCGTATGAACTAATACTTC
TCCATTTGCTTTTTTTTGG
Found at i:93741213 original size:64 final size:64
Alignment explanation
Indices: 93741140--93741272 Score: 248
Period size: 64 Copynumber: 2.1 Consensus size: 64
93741130 TAATATTTCT
*
93741140 ATATTTCTATCACGATTTTTAATAAATTTATTTATTGATATAATATGTCCCATCTAATATACAA
1 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAA
*
93741204 ATATTTCTATCACGGTTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAA
1 ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAA
93741268 ATATT
1 ATATT
93741273 AAATAAAATA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 67 1.00
ACGTcount: A:0.38, C:0.12, G:0.05, T:0.46
Consensus pattern (64 bp):
ATATTTCTATCACGATTTTTAATAAATTTATTTATTAATATAATATGTCCCATCTAATATACAA
Found at i:93741348 original size:24 final size:24
Alignment explanation
Indices: 93741321--93741391 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
93741311 ATTATTATTG
*
93741321 AAATATTCTCGTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAC
*
93741345 AAATATTATTGTCCGTTTTATCAC
1 AAATATTATCGTCCGTTTTATCAC
*
93741369 AAATATTATCGTTCGTTTTATCA
1 AAATATTATCGTCCGTTTTATCA
93741392 TTTAAGTTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.28, C:0.18, G:0.08, T:0.45
Consensus pattern (24 bp):
AAATATTATCGTCCGTTTTATCAC
Found at i:93741597 original size:29 final size:29
Alignment explanation
Indices: 93741565--93741638 Score: 123
Period size: 29 Copynumber: 2.6 Consensus size: 29
93741555 AACGACACGT
*
93741565 ATATTATTTAATTAAAATAAATTTTT-TCA
1 ATATTATTTAATTAAAAT-AATTTTTATAA
93741594 ATATTATTTAATTAAAATAATTTTTATAA
1 ATATTATTTAATTAAAATAATTTTTATAA
93741623 ATATTATTTAATTAAA
1 ATATTATTTAATTAAA
93741639 TATTATTTAA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
28 7 0.16
29 36 0.84
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.51
Consensus pattern (29 bp):
ATATTATTTAATTAAAATAATTTTTATAA
Found at i:93741638 original size:15 final size:15
Alignment explanation
Indices: 93741565--93741649 Score: 81
Period size: 15 Copynumber: 5.8 Consensus size: 15
93741555 AACGACACGT
93741565 ATATTATTTAATTAA
1 ATATTATTTAATTAA
* * *
93741580 A-ATAAATTT-TTTCA
1 ATAT-TATTTAATTAA
93741594 ATATTATTTAATTAAA
1 ATATTATTTAATT-AA
93741610 ATAATT-TTT-A-TAA
1 AT-ATTATTTAATTAA
93741623 ATATTATTTAATTAA
1 ATATTATTTAATTAA
93741638 ATATTATTTAAT
1 ATATTATTTAAT
93741650 CCCGCAACTT
Statistics
Matches: 56, Mismatches: 6, Indels: 16
0.72 0.08 0.21
Matches are distributed among these distances:
12 3 0.05
13 7 0.12
14 12 0.21
15 25 0.45
16 6 0.11
17 3 0.05
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (15 bp):
ATATTATTTAATTAA
Found at i:93741766 original size:9 final size:9
Alignment explanation
Indices: 93741754--93742119 Score: 161
Period size: 9 Copynumber: 41.6 Consensus size: 9
93741744 TATTTGATAT
*
93741754 CATAATTTA
1 CATAACTTA
93741763 CATAACTTA
1 CATAACTTA
* *
93741772 CAAAACGTA
1 CATAACTTA
93741781 CATAACTTA
1 CATAACTTA
*
93741790 TATAACTTA
1 CATAACTTA
* *
93741799 AATAA-ATA
1 CATAACTTA
**
93741807 TTTAACTTA
1 CATAACTTA
*
93741816 TATAACTTA
1 CATAACTTA
93741825 CATAACTTA
1 CATAACTTA
*
93741834 TATAACTTA
1 CATAACTTA
*
93741843 CAT-A-TAAA
1 CATAACT-TA
*
93741851 TATAACTTA
1 CATAACTTA
*
93741860 CATAA-ATA
1 CATAACTTA
* * *
93741868 TATATCATA
1 CATAACTTA
93741877 TCATAACTTA
1 -CATAACTTA
93741887 CATAATACTTA
1 CAT-A-ACTTA
* *
93741898 AATATA-TTT
1 CATA-ACTTA
*
93741907 TAT-A--TA
1 CATAACTTA
*
93741913 -ATAATTTA
1 CATAACTTA
93741921 CATAACTTA
1 CATAACTTA
*
93741930 CAAAACTTA
1 CATAACTTA
*
93741939 CATGACTTA
1 CATAACTTA
*
93741948 TATAACTTA
1 CATAACTTA
* *
93741957 GATAA-ATA
1 CATAACTTA
*
93741965 TATAACTTA
1 CATAACTTA
*
93741974 TATAACTTA
1 CATAACTTA
93741983 CATAACTTA
1 CATAACTTA
*
93741992 TATAACTTA
1 CATAACTTA
* *
93742001 GATAA-ATA
1 CATAACTTA
*
93742009 TATAACTTA
1 CATAACTTA
* *
93742018 TATAACTCA
1 CATAACTTA
*
93742027 TATAACTTA
1 CATAACTTA
* *
93742036 GATAA-ATA
1 CATAACTTA
* *
93742044 TATAATTTA
1 CATAACTTA
*
93742053 CATAA-ATA
1 CATAACTTA
* * *
93742061 TATATCATA
1 CATAACTTA
93742070 TCATAACTTA
1 -CATAACTTA
93742080 CATAACTTA
1 CATAACTTA
93742089 CATAA--TA
1 CATAACTTA
*
93742096 CTTAGA-TATA
1 CATA-ACT-TA
93742106 CATAACTTA
1 CATAACTTA
93742115 CATAA
1 CATAA
93742120 TACTTAGATA
Statistics
Matches: 276, Mismatches: 60, Indels: 42
0.73 0.16 0.11
Matches are distributed among these distances:
5 2 0.01
6 2 0.01
7 7 0.03
8 40 0.14
9 195 0.71
10 23 0.08
11 7 0.03
ACGTcount: A:0.48, C:0.13, G:0.02, T:0.37
Consensus pattern (9 bp):
CATAACTTA
Found at i:93741827 original size:44 final size:46
Alignment explanation
Indices: 93741765--93741861 Score: 139
Period size: 44 Copynumber: 2.2 Consensus size: 46
93741755 ATAATTTACA
93741765 TAACTTACAAAACGTACATAACTTATATAACTTA-A-ATAAATATT
1 TAACTTACAAAACGTACATAACTTATATAACTTACATATAAATATT
* * *
93741809 TAACTTATATAACTTACATAACTTATATAACTTACATATAAATA--
1 TAACTTACAAAACGTACATAACTTATATAACTTACATATAAATATT
93741853 TAACTTACA
1 TAACTTACA
93741862 TAAATATATA
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
44 39 0.83
45 1 0.02
46 7 0.15
ACGTcount: A:0.48, C:0.14, G:0.01, T:0.36
Consensus pattern (46 bp):
TAACTTACAAAACGTACATAACTTATATAACTTACATATAAATATT
Done.