Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 281 of 349
Found at i:93741830 original size:35 final size:35
Alignment explanation
Indices: 93741782--93742057 Score: 159
Period size: 35 Copynumber: 8.1 Consensus size: 35
93741772 CAAAACGTAC
*
93741782 ATAACTTATATAACTTAAATAAATATTTAACTTAT
1 ATAACTTATATAACTTAAATAAATATATAACTTAT
* * *
93741817 ATAACTTACATAACTTATAT-AA-CT-T-AC--AT
1 ATAACTTATATAACTTAAATAAATATATAACTTAT
* * *
93741846 ATAA---ATATAACTTACATAAATATATATCATAT
1 ATAACTTATATAACTTAAATAAATATATAACTTAT
* * *
93741878 CATAACTTACATAATACTTAAAT--ATATTTTA--TAT
1 -ATAACTTATAT-A-ACTTAAATAAATATATAACTTAT
* * * * *
93741912 AATAATTTACATAACTTACAA-AACTTACATGACTTAT
1 -ATAACTTATATAACTTA-AATAA-ATATATAACTTAT
* * * * *
93741949 ATAACTTAGATAA-ATATATAACTTATATAACTTAC
1 ATAACTTATATAACTTAAATAA-ATATATAACTTAT
*
93741984 ATAACTTATATAACTTAGATAAATATATAACTTAT
1 ATAACTTATATAACTTAAATAAATATATAACTTAT
* * * *
93742019 ATAACTCATATAACTTAGATAAATATATAATTTAC
1 ATAACTTATATAACTTAAATAAATATATAACTTAT
93742054 ATAA
1 ATAA
93742058 ATATATATCA
Statistics
Matches: 188, Mismatches: 33, Indels: 40
0.72 0.13 0.15
Matches are distributed among these distances:
26 11 0.06
27 2 0.01
28 1 0.01
29 7 0.04
30 1 0.01
31 2 0.01
32 8 0.04
33 8 0.04
34 16 0.09
35 96 0.51
36 25 0.13
37 4 0.02
38 7 0.04
ACGTcount: A:0.48, C:0.12, G:0.01, T:0.39
Consensus pattern (35 bp):
ATAACTTATATAACTTAAATAAATATATAACTTAT
Found at i:93741981 original size:44 final size:43
Alignment explanation
Indices: 93741782--93742024 Score: 200
Period size: 44 Copynumber: 5.3 Consensus size: 43
93741772 CAAAACGTAC
* ** * * * *
93741782 ATAACTTATATAACTTAAATAAATATTTAACTTATATAACTTAC
1 ATAACTTATATAACTTACATACTTATATAACTTAGATAA-ATAT
* *
93741826 ATAACTTATATAACTTACATA-TAAATATAACTTACATAAATAT
1 ATAACTTATATAACTTACATACT-TATATAACTTAGATAAATAT
* * ** * *
93741869 ATATCATATCATAACTTACATAATACTTAAATATATTTTATATAATAATTTAC
1 ATAACTTAT-ATAACTTAC---ATACTT--ATATAACTTAGAT-A-AA--TAT
* *
93741922 ATAACTTACAAAACTTACATGACTTATATAACTTAGATAAATAT
1 ATAACTTATATAACTTACAT-ACTTATATAACTTAGATAAATAT
93741966 ATAACTTATATAACTTACATAACTTATATAACTTAGATAAATAT
1 ATAACTTATATAACTTACAT-ACTTATATAACTTAGATAAATAT
93742010 ATAACTTATATAACT
1 ATAACTTATATAACT
93742025 CATATAACTT
Statistics
Matches: 161, Mismatches: 25, Indels: 26
0.76 0.12 0.12
Matches are distributed among these distances:
43 9 0.06
44 100 0.62
46 2 0.01
47 4 0.02
48 11 0.07
49 12 0.07
50 5 0.03
51 2 0.01
52 8 0.05
53 8 0.05
ACGTcount: A:0.48, C:0.12, G:0.01, T:0.39
Consensus pattern (43 bp):
ATAACTTATATAACTTACATACTTATATAACTTAGATAAATAT
Found at i:93742012 original size:158 final size:158
Alignment explanation
Indices: 93741723--93742090 Score: 508
Period size: 158 Copynumber: 2.3 Consensus size: 158
93741713 TCAAATAAAA
*
93741723 AACTTACATAATACATAAATATATTTGATATCATAATTTACATAACTTACAAAACGTACATAACT
1 AACTTACATAATACATAAATATATTTGATATAATAATTTACATAACTTACAAAACGTACATAACT
*
93741788 TATATAACTTAAATAAATATTTAACTTATATAACTTACATAACTTATATAACTTACATATAAATA
66 TATATAACTTAAATAAATATATAACTTATATAACTTACATAACTTATATAACTTACATATAAATA
93741853 TAACTTACATAAATATATATCATATCAT
131 TAACTTACATAAATATATATCATATCAT
* * * *
93741881 AACTTACATAATACTTAAATATATTTTATATAATAATTTACATAACTTACAAAACTTACATGACT
1 AACTTACATAATACATAAATATATTTGATATAATAATTTACATAACTTACAAAACGTACATAACT
* *
93741946 TATATAACTTAGATAAATATATAACTTATATAACTTACATAACTTATATAACTTAGATA-AATAT
66 TATATAACTTAAATAAATATATAACTTATATAACTTACATAACTTATATAACTTACATATAA-AT
* * * * *
93742010 ATAACTTATATAACTCATATAACTTA-GAT
130 ATAACTTACATAAAT-ATATATCATATCAT
* * * * * *
93742039 AA-ATATATAATTTACATAAATATATATCATATCATAACTTACATAACTTACA
1 AACTTACATAA--TACATAAATATATTTGATATAATAATTTACATAACTTACA
93742091 TAATACTTAG
Statistics
Matches: 186, Mismatches: 20, Indels: 7
0.87 0.09 0.03
Matches are distributed among these distances:
157 8 0.04
158 135 0.73
159 43 0.23
ACGTcount: A:0.48, C:0.13, G:0.02, T:0.38
Consensus pattern (158 bp):
AACTTACATAATACATAAATATATTTGATATAATAATTTACATAACTTACAAAACGTACATAACT
TATATAACTTAAATAAATATATAACTTATATAACTTACATAACTTATATAACTTACATATAAATA
TAACTTACATAAATATATATCATATCAT
Found at i:93742032 original size:44 final size:44
Alignment explanation
Indices: 93741922--93742040 Score: 175
Period size: 44 Copynumber: 2.7 Consensus size: 44
93741912 AATAATTTAC
* * * *
93741922 ATAACTTACAAAACTTACATGACTTATATAACTTAGATAAATAT
1 ATAACTTATATAACTCACATAACTTATATAACTTAGATAAATAT
*
93741966 ATAACTTATATAACTTACATAACTTATATAACTTAGATAAATAT
1 ATAACTTATATAACTCACATAACTTATATAACTTAGATAAATAT
* *
93742010 ATAACTTATATAACTCATATAACTTAGATAA
1 ATAACTTATATAACTCACATAACTTATATAA
93742041 ATATATAATT
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 69 1.00
ACGTcount: A:0.48, C:0.13, G:0.03, T:0.36
Consensus pattern (44 bp):
ATAACTTATATAACTCACATAACTTATATAACTTAGATAAATAT
Found at i:93742107 original size:26 final size:26
Alignment explanation
Indices: 93742078--93742131 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
93742068 TATCATAACT
93742078 TACATAACTTACATAATACTTAGATA
1 TACATAACTTACATAATACTTAGATA
93742104 TACATAACTTACATAATACTTAGATA
1 TACATAACTTACATAATACTTAGATA
93742130 TA
1 TA
93742132 TATCATATCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.46, C:0.15, G:0.04, T:0.35
Consensus pattern (26 bp):
TACATAACTTACATAATACTTAGATA
Found at i:93742108 original size:53 final size:51
Alignment explanation
Indices: 93741958--93742110 Score: 143
Period size: 53 Copynumber: 2.9 Consensus size: 51
93741948 TATAACTTAG
*
93741958 ATAA-ATATATAACTTATATAACTTACAT-A-ACTTATATAACTTAGATAAATAT
1 ATAACATATATAACTTATATAACTTACATAATACTTA-AT-A--TACATAAATAT
* * * *
93742010 ATAACTTATATAACTCATATAACTTAGATAAATA-TATAATTTACATAAATAT
1 ATAACATATATAACTTATATAACTTACAT-AATACT-TAATATACATAAATAT
* *
93742062 ATATCATATCATAACTTACATAACTTACATAATACTTAGATATACATAA
1 ATAACATAT-ATAACTTATATAACTTACATAATACTTA-ATATACATAA
93742111 CTTACATAAT
Statistics
Matches: 82, Mismatches: 11, Indels: 15
0.76 0.10 0.14
Matches are distributed among these distances:
52 27 0.33
53 48 0.59
55 4 0.05
56 3 0.04
ACGTcount: A:0.49, C:0.12, G:0.02, T:0.37
Consensus pattern (51 bp):
ATAACATATATAACTTATATAACTTACATAATACTTAATATACATAAATAT
Found at i:93745477 original size:16 final size:16
Alignment explanation
Indices: 93745456--93745489 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
93745446 TAATAAAAAG
93745456 ATATAGTGCCTTCCTC
1 ATATAGTGCCTTCCTC
93745472 ATATAGTGCCTTCCTC
1 ATATAGTGCCTTCCTC
93745488 AT
1 AT
93745490 CAATGGATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.21, C:0.29, G:0.12, T:0.38
Consensus pattern (16 bp):
ATATAGTGCCTTCCTC
Found at i:93747345 original size:13 final size:14
Alignment explanation
Indices: 93747329--93747357 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
93747319 TTCTAAATAT
93747329 TTATAA-TGTTTAA
1 TTATAATTGTTTAA
93747342 TTATAATTGTTTAA
1 TTATAATTGTTTAA
93747356 TT
1 TT
93747358 CAATTCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TTATAATTGTTTAA
Found at i:93747799 original size:21 final size:21
Alignment explanation
Indices: 93747772--93747826 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
93747762 ACTTAGAGCG
93747772 GAGGCAGCAGCGAGGGAGGCA
1 GAGGCAGCAGCGAGGGAGGCA
* *
93747793 GCGGCAGCAGTGAGGGAGGCA
1 GAGGCAGCAGCGAGGGAGGCA
*
93747814 GAGGTAGCAGCGA
1 GAGGCAGCAGCGA
93747827 TGGCAGCAGA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.27, C:0.18, G:0.51, T:0.04
Consensus pattern (21 bp):
GAGGCAGCAGCGAGGGAGGCA
Found at i:93748265 original size:42 final size:43
Alignment explanation
Indices: 93748210--93748324 Score: 117
Period size: 43 Copynumber: 2.7 Consensus size: 43
93748200 GTTTTTCTGG
*
93748210 CAAACAGCC-CTAAAAGCCATTACTTTTAGCAACGC-TTTCCAA
1 CAAAC-GCCGCTAAAAGCCATGACTTTTAGCAACGCTTTTCCAA
* * * ***
93748252 CAAACGCCGCTAAAAACCATGACTTTTAGTAGCGCTTTTTTTA
1 CAAACGCCGCTAAAAGCCATGACTTTTAGCAACGCTTTTCCAA
** *
93748295 CAAACGCCGCTAAAAGTTATGGCTTTTAGC
1 CAAACGCCGCTAAAAGCCATGACTTTTAGC
93748325 GGTGTTTTTT
Statistics
Matches: 59, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
41 3 0.05
42 27 0.46
43 29 0.49
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (43 bp):
CAAACGCCGCTAAAAGCCATGACTTTTAGCAACGCTTTTCCAA
Found at i:93748335 original size:43 final size:43
Alignment explanation
Indices: 93748210--93748309 Score: 114
Period size: 42 Copynumber: 2.3 Consensus size: 43
93748200 GTTTTTCTGG
* * * ***
93748210 CAAACAGCC-CTAAAAGCCATTACTTTTAGCAACGC-TTTCCAA
1 CAAAC-GCCGCTAAAAACCATGACTTTTAGCAGCGCTTTTTTTA
*
93748252 CAAACGCCGCTAAAAACCATGACTTTTAGTAGCGCTTTTTTTA
1 CAAACGCCGCTAAAAACCATGACTTTTAGCAGCGCTTTTTTTA
93748295 CAAACGCCGCTAAAA
1 CAAACGCCGCTAAAA
93748310 GTTATGGCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
41 3 0.06
42 27 0.55
43 19 0.39
ACGTcount: A:0.35, C:0.28, G:0.12, T:0.25
Consensus pattern (43 bp):
CAAACGCCGCTAAAAACCATGACTTTTAGCAGCGCTTTTTTTA
Found at i:93750733 original size:21 final size:21
Alignment explanation
Indices: 93750686--93750733 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 21
93750676 ATAATAAATT
* *
93750686 TTGCTTTTAGACATATTACTC
1 TTGCTTCTAAACATATTACTC
** *
93750707 CCGCTTCTAAACATATTATTC
1 TTGCTTCTAAACATATTACTC
93750728 TTGCTT
1 TTGCTT
93750734 AAAAAAATCG
Statistics
Matches: 20, Mismatches: 7, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.23, C:0.23, G:0.08, T:0.46
Consensus pattern (21 bp):
TTGCTTCTAAACATATTACTC
Found at i:93751297 original size:16 final size:17
Alignment explanation
Indices: 93751276--93751309 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
93751266 AAGTTTTATT
*
93751276 TATTTATTATAT-TTAA
1 TATTTAATATATATTAA
93751292 TATTTAATATATATTAA
1 TATTTAATATATATTAA
93751309 T
1 T
93751310 TAATATTCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
TATTTAATATATATTAA
Found at i:93756189 original size:46 final size:46
Alignment explanation
Indices: 93756088--93756213 Score: 143
Period size: 46 Copynumber: 2.7 Consensus size: 46
93756078 TGTGGTATGT
* *
93756088 GAGCTAGTGTAAGACATGTCTGGAACATGTATCAGCCATATTATGAAA
1 GAGCTAGTGTAAGACATGTCTGG-ACATGCATC-GCCATATGATGAAA
* *
93756136 -A-CCAGTGTAAGACATGTCTGAGACATGCATCGGCAT-TGA-GACAA
1 GAGCTAGTGTAAGACATGTCTG-GACATGCATCGCCATATGATGA-AA
93756180 GAGCTAGTGTAAGACATGTCTGGGACATGCATCG
1 GAGCTAGTGTAAGACATGTCT-GGACATGCATCG
93756214 ACCTCGGGAT
Statistics
Matches: 68, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
43 2 0.03
44 4 0.06
45 5 0.07
46 54 0.79
47 3 0.04
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGACATGCATCGCCATATGATGAAA
Found at i:93758408 original size:24 final size:25
Alignment explanation
Indices: 93758330--93758435 Score: 90
Period size: 25 Copynumber: 4.2 Consensus size: 25
93758320 GTAACTCCGA
* **
93758330 AGAGCCATTTATCAGGAAGCTCCGG
1 AGAGCCATATATCAGGAAGCTCAAG
* *
93758355 ATAGCCATATATCAGGAAGTTCAAG
1 AGAGCCATATATCAGGAAGCTCAAG
* * *
93758380 TGAGCCA-ATATCGGGAAGCTCTAG
1 AGAGCCATATATCAGGAAGCTCAAG
* *
93758404 AGAGCCAT-TAATTAGGAAGCTCACAA
1 AGAGCCATAT-ATCAGGAAGCTCA-AG
93758430 AGAGCC
1 AGAGCC
93758436 TTTAATCGAG
Statistics
Matches: 63, Mismatches: 15, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
24 21 0.33
25 35 0.56
26 7 0.11
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.20
Consensus pattern (25 bp):
AGAGCCATATATCAGGAAGCTCAAG
Found at i:93764108 original size:20 final size:20
Alignment explanation
Indices: 93764079--93764128 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
93764069 AGCACATGTA
* *
93764079 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
93764099 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
93764119 TTCATTAAAA
1 TTCA-TAAAA
93764129 ATCACTTTGT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 21 0.84
21 4 0.16
ACGTcount: A:0.40, C:0.12, G:0.02, T:0.46
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:93768481 original size:21 final size:20
Alignment explanation
Indices: 93768457--93768495 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
93768447 TACATGGTCA
* *
93768457 CTAATCAAATTACACTTTTTT
1 CTAATAAAAATACA-TTTTTT
93768478 CTAATAAAAATACATTTT
1 CTAATAAAAATACATTTT
93768496 AATTTATAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (20 bp):
CTAATAAAAATACATTTTTT
Found at i:93774322 original size:16 final size:17
Alignment explanation
Indices: 93774303--93774335 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
93774293 CCTTCAAATA
93774303 ACAAAAAAACC-AAAAC
1 ACAAAAAAACCTAAAAC
93774319 ACAAAAAAACCTAAAAC
1 ACAAAAAAACCTAAAAC
93774336 TCTTGCCAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.73, C:0.24, G:0.00, T:0.03
Consensus pattern (17 bp):
ACAAAAAAACCTAAAAC
Found at i:93786439 original size:25 final size:25
Alignment explanation
Indices: 93786405--93786455 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
93786395 GAAAAGAAAA
*
93786405 AGAAAACTTAGGTTCGGCCATTCTC
1 AGAAAACTTAGGTTCGACCATTCTC
*
93786430 AGAAAACTTAGGTTTGACCATTCTC
1 AGAAAACTTAGGTTCGACCATTCTC
93786455 A
1 A
93786456 AGCTTGATTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (25 bp):
AGAAAACTTAGGTTCGACCATTCTC
Found at i:93787261 original size:45 final size:45
Alignment explanation
Indices: 93787210--93787387 Score: 241
Period size: 45 Copynumber: 3.9 Consensus size: 45
93787200 TTATGCTATA
* * *
93787210 TGTTTTCGTGTAAGAACATATCTGGGGCGTTGGCATCGATATATG
1 TGTTTTCGTGTAAGACCACATCTGGGACGTTGGCATCGATATATG
*
93787255 TGTTTTCGTGTAAGACCCACATTTAGGG-CGTTGGCATCGATATATG
1 TGTTTTCGTGTAAGA-CCACATCT-GGGACGTTGGCATCGATATATG
* * *
93787301 TGTTTTCGTGTAAGACCACGTCTGGGATGTTGGTATCGATATATG
1 TGTTTTCGTGTAAGACCACATCTGGGACGTTGGCATCGATATATG
** *
93787346 TGTTTTCGTGTAAGACCATGTCTGGGACATTGGCATCGATAT
1 TGTTTTCGTGTAAGACCACATCTGGGACGTTGGCATCGATAT
93787388 GTGGTTACGA
Statistics
Matches: 119, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
44 3 0.03
45 75 0.63
46 38 0.32
47 3 0.03
ACGTcount: A:0.21, C:0.15, G:0.28, T:0.36
Consensus pattern (45 bp):
TGTTTTCGTGTAAGACCACATCTGGGACGTTGGCATCGATATATG
Found at i:93787402 original size:43 final size:43
Alignment explanation
Indices: 93787210--93787505 Score: 211
Period size: 45 Copynumber: 6.8 Consensus size: 43
93787200 TTATGCTATA
* * * *
93787210 TGTTTTCGTGTAAGAACATATCTGGGGCGTTGGCATCGATATATG
1 TGTTTTCGTGTAAGACCATGTCTGGGACATTGGCATCG--ATATG
** * *
93787255 TGTTTTCGTGTAAGACCCACATTTAGGG-CGTTGGCATCGATATATG
1 TGTTTTCGTGTAAGA-CCATGTCT-GGGACATTGGCATCG--ATATG
* ** *
93787301 TGTTTTCGTGTAAGACCACGTCTGGGATGTTGGTATCGATATATG
1 TGTTTTCGTGTAAGACCATGTCTGGGACATTGGCATCG--ATATG
93787346 TGTTTTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATG
1 TGTTTTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATG
* * * * * * * *
93787389 TGGTTACGAGTAAGACCATGTTTGGGACATCGTCATTG-TATT
1 TGTTTTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATG
* * * * *
93787431 TG-ATTCGTGTAAGACCCTATCTGGGACAGTGGCATTGATATG
1 TGTTTTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATG
* * ** * * *
93787473 AGATAGCATGTAAGACCACGTCTGGGACGTTGG
1 TGTTTTCGTGTAAGACCATGTCTGGGACATTGG
93787506 AATTTTTCGA
Statistics
Matches: 207, Mismatches: 39, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
41 26 0.13
42 9 0.04
43 57 0.28
44 3 0.01
45 71 0.34
46 38 0.18
47 3 0.01
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (43 bp):
TGTTTTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATG
Found at i:93787456 original size:41 final size:42
Alignment explanation
Indices: 93787287--93787500 Score: 144
Period size: 43 Copynumber: 4.9 Consensus size: 42
93787277 TTAGGGCGTT
* * ** *
93787287 GGCATCGATATATGTGTTTTCGTGTAAGACCACGTCTGGGATGTT
1 GGCATCG--ATATGTG-ATTCGTGTAAGACCATGTCTGGGACATC
* * *
93787332 GGTATCGATATATGTGTTTTCGTGTAAGACCATGTCTGGGACATT
1 GGCATCG--ATATGTG-ATTCGTGTAAGACCATGTCTGGGACATC
* * *
93787377 GGCATCGATATGTGGTTACGAGTAAGACCATGTTTGGGACATC
1 GGCATCGATATGTGATT-CGTGTAAGACCATGTCTGGGACATC
* * * * *
93787420 GTCATTG-TATTTGATTCGTGTAAGACCCTATCTGGGACAGT-
1 GGCATCGATATGTGATTCGTGTAAGACCATGTCTGGGACA-TC
* * * * *
93787461 GGCATTGATATGAGATAGCATGTAAGACCACGTCTGGGAC
1 GGCATCGATATGTGAT-TCGTGTAAGACCATGTCTGGGAC
93787501 GTTGGAATTT
Statistics
Matches: 140, Mismatches: 25, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
41 25 0.18
42 16 0.11
43 52 0.37
45 47 0.34
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (42 bp):
GGCATCGATATGTGATTCGTGTAAGACCATGTCTGGGACATC
Found at i:93789096 original size:39 final size:39
Alignment explanation
Indices: 93789068--93789191 Score: 185
Period size: 39 Copynumber: 3.2 Consensus size: 39
93789058 GGACTTTAAC
* * **
93789068 CCGGACATATTTCCAGCATGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
*
93789107 CCGGTTATAATTCCAGCACATAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
*
93789146 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
*
93789185 CTGGATA
1 CCGGATA
93789192 AACATCACTG
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
Found at i:93789116 original size:78 final size:77
Alignment explanation
Indices: 93789030--93789185 Score: 172
Period size: 78 Copynumber: 2.0 Consensus size: 77
93789020 GAATTTAAAC
* * * * **
93789030 CCGGTATAATACAAGCTCGA-AGTCTGCGGGACTTTAA-CCCGGACATATTTCCAGCATGTAGCC
1 CCGGTATAATACAAGCAC-ATAGCCTGC-GGACCTTAAGCCCGGACATAATTCCAGCACATAGCC
*
93789093 TGCGGACCTTAAGT
64 TGCGGACCCTAAGT
* * * *
93789107 CCGGTTATAATTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAATTCCAGCACATAGCCT
1 CCGG-TATAATACAAGCACATAGCCTGCGGACCTTAAGCCCGGACATAATTCCAGCACATAGCCT
93789172 GCGGACCCTAAGT
65 GCGGACCCTAAGT
93789185 C
1 C
93789186 TGGATAAACA
Statistics
Matches: 65, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
77 13 0.20
78 52 0.80
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (77 bp):
CCGGTATAATACAAGCACATAGCCTGCGGACCTTAAGCCCGGACATAATTCCAGCACATAGCCTG
CGGACCCTAAGT
Found at i:93804176 original size:21 final size:21
Alignment explanation
Indices: 93804152--93804220 Score: 68
Period size: 21 Copynumber: 3.3 Consensus size: 21
93804142 TAGCTCTCAC
93804152 GAGCTTTTATTCAACTCTTAT
1 GAGCTTTTATTCAACTCTTAT
* * **
93804173 GAGCTTTTAGTCAGCTCTTCC
1 GAGCTTTTATTCAACTCTTAT
* *
93804194 GAGCTTCTGTT-AAGCTCTTAT
1 GAGCTTTTATTCAA-CTCTTAT
93804215 GAGCTT
1 GAGCTT
93804221 CTGTTTAGCT
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
20 1 0.03
21 36 0.97
ACGTcount: A:0.19, C:0.22, G:0.17, T:0.42
Consensus pattern (21 bp):
GAGCTTTTATTCAACTCTTAT
Found at i:93804221 original size:21 final size:21
Alignment explanation
Indices: 93804166--93804230 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
93804156 TTTTATTCAA
* *
93804166 CTCTTATGAGCTTTTAG-TCAG
1 CTCTTATGAGCTTCT-GTTAAG
**
93804187 CTCTTCCGAGCTTCTGTTAAG
1 CTCTTATGAGCTTCTGTTAAG
*
93804208 CTCTTATGAGCTTCTGTTTAG
1 CTCTTATGAGCTTCTGTTAAG
93804229 CT
1 CT
93804231 TTCAAGATTT
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 1 0.03
21 35 0.97
ACGTcount: A:0.15, C:0.23, G:0.18, T:0.43
Consensus pattern (21 bp):
CTCTTATGAGCTTCTGTTAAG
Found at i:93806732 original size:48 final size:48
Alignment explanation
Indices: 93806672--93806800 Score: 177
Period size: 48 Copynumber: 2.6 Consensus size: 48
93806662 TATGTGTGCT
* ** *
93806672 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGGTATACAAGCC
1 AGTGTAAAACATGTCTGGGACATGCATCAACCTCGAGATATACAAGCC
* *
93806720 AGTGTAAAACATGTTTGGGACATGCATCAACCTCGAGATATACAAGCT
1 AGTGTAAAACATGTCTGGGACATGCATCAACCTCGAGATATACAAGCC
*
93806768 AGTGTAAGACCATGTCTGGGACATGGCATCAAC
1 AGTGTAA-AACATGTCTGGGACAT-GCATCAAC
93806801 TTGTTGTGTG
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
48 49 0.69
49 14 0.20
50 8 0.11
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.22
Consensus pattern (48 bp):
AGTGTAAAACATGTCTGGGACATGCATCAACCTCGAGATATACAAGCC
Found at i:93806869 original size:49 final size:47
Alignment explanation
Indices: 93806768--93806986 Score: 205
Period size: 49 Copynumber: 4.6 Consensus size: 47
93806758 TATACAAGCT
* * * ***
93806768 AGTGTAAGACCATGTCTGGGACATGGCAT-CAAC-TTGT-TGTGTGTC
1 AGTGTAAGACC-TGTCTGGGACATGGCATACACCGATATATGAAAGTC
* * * *
93806813 AGTGTAAGACCTGTCTGGGACATGGCATGGACACCAATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCAT--ACACCGATATATGAAAGTC
93806862 AGTGTAAGACCTGTCTGGGACATGGCAT-CAGCCTTGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATACA-CC--GATATATGAAAGTC
* *
93806911 AGTGTAAGACCTGTTTGGGACACGGCAT-CAGCCTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATACA--C-CGATATATGAAAGTC
93806960 AGTGTAAGACCATGTCTGGGACATGGC
1 AGTGTAAGACC-TGTCTGGGACATGGC
93806987 GTCGGCATCT
Statistics
Matches: 147, Mismatches: 16, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
44 17 0.12
45 11 0.07
46 2 0.01
47 5 0.03
48 1 0.01
49 96 0.65
50 14 0.10
51 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCTGTCTGGGACATGGCATACACCGATATATGAAAGTC
Found at i:93806938 original size:98 final size:94
Alignment explanation
Indices: 93806763--93806986 Score: 265
Period size: 98 Copynumber: 2.3 Consensus size: 94
93806753 CGAGATATAC
* * *
93806763 AAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAACTTGTTGTGTGTCAGTGTAAGACCTGTC
1 AAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACTTGTTATGAGTCAGTGTAAGACCTGTC
* *
93806828 TGGGACATGGCAT-GGACAC-CAATAGATGA
66 TGGGACACGGCATCAG-C-CTCAATAGATGA
* *
93806857 GAGCCAGTGTAAGACC-TGTCTGGGACATGGCATCAGCCTTGATATATGAAAGTCAGTGTAAGAC
1 AAGCCAGTGTAAGACCATGTCTGGGACATGGCATCA-ACTTG-T-TATG--AGTCAGTGTAAGAC
* * *
93806921 CTGTTTGGGACACGGCATCAGCCTCGATATATGA
61 CTGTCTGGGACACGGCATCAGCCTCAATAGATGA
*
93806955 AAGTCAGTGTAAGACCATGTCTGGGACATGGC
1 AAGCCAGTGTAAGACCATGTCTGGGACATGGC
93806987 GTCGGCATCT
Statistics
Matches: 110, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
93 19 0.17
94 18 0.16
95 1 0.01
96 3 0.03
97 1 0.01
98 52 0.47
99 16 0.15
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (94 bp):
AAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACTTGTTATGAGTCAGTGTAAGACCTGTC
TGGGACACGGCATCAGCCTCAATAGATGA
Found at i:93813648 original size:49 final size:49
Alignment explanation
Indices: 93813589--93813717 Score: 152
Period size: 49 Copynumber: 2.6 Consensus size: 49
93813579 ATTAAAGTCG
* * * *
93813589 ATGCCGTGTCCCAGATATGACTTACACTGACTTTCATATATTGAG-GCCA
1 ATGCCATGTCCCAGACATGTCTTACACTGACTCTCATATATTG-GTGCCA
* * * * *
93813638 ATGCCATGTCCCAGACATGTCTTACATTGGCTCTCATCTATTGGTGTCG
1 ATGCCATGTCCCAGACATGTCTTACACTGACTCTCATATATTGGTGCCA
*
93813687 ATGCCATGTCCCAGACAGGTCTTACACTGAC
1 ATGCCATGTCCCAGACATGTCTTACACTGAC
93813718 ACACAACAAG
Statistics
Matches: 67, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
48 1 0.01
49 66 0.99
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.30
Consensus pattern (49 bp):
ATGCCATGTCCCAGACATGTCTTACACTGACTCTCATATATTGGTGCCA
Found at i:93827107 original size:39 final size:41
Alignment explanation
Indices: 93827006--93827189 Score: 213
Period size: 40 Copynumber: 4.6 Consensus size: 41
93826996 TCGAATGAAG
* * * *
93827006 TCCGGGCTAAGTCCCGAAGG-GTTTGTGCTAAGTGAC-CATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAATA
*
93827046 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATA
*
93827086 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
*
93827125 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
* *
93827165 ACC-GGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
93827190 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
39 56 0.45
40 59 0.47
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
Found at i:93827196 original size:79 final size:78
Alignment explanation
Indices: 93827059--93827212 Score: 197
Period size: 79 Copynumber: 2.0 Consensus size: 78
93827049 GGACTAAGAT
* **
93827059 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTA-CTA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAG-TAGCTA
93827123 AATCCGGGTTAAGTC
65 AATCC-GGTTAAGTC
* *
93827138 CCGAAGGCATTTGTGCGAGTTACT-ATAACC-GGCTATGTCCCGAAGGCATTTGAACGAGTAGCT
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTAGCT
*
93827201 ATATCCGGTTAA
64 AAATCCGGTTAA
93827213 ATTCTGAAGG
Statistics
Matches: 66, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
78 16 0.24
79 50 0.76
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTAGCTAA
ATCCGGTTAAGTC
Found at i:93832346 original size:49 final size:49
Alignment explanation
Indices: 93832292--93832414 Score: 151
Period size: 49 Copynumber: 2.5 Consensus size: 49
93832282 GTTGATGCTG
*
93832292 TGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAG-GCCGATGCCA
1 TGTCCCAGACAGGTCTTACACTGACTCTCATATATCG-GTGCCGATGCCA
* * * *
93832341 TGTCCCAGATAGGTCTTACACT-AGCTCTCATCTATTGGTGTCGATGCCA
1 TGTCCCAGACAGGTCTTACACTGA-CTCTCATATATCGGTGCCGATGCCA
**
93832390 TGTCGTAGACAGGTCTTACACTGAC
1 TGTCCCAGACAGGTCTTACACTGAC
93832415 ACACAACAAG
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
48 2 0.03
49 60 0.95
50 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (49 bp):
TGTCCCAGACAGGTCTTACACTGACTCTCATATATCGGTGCCGATGCCA
Found at i:93832457 original size:31 final size:31
Alignment explanation
Indices: 93832419--93832480 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
93832409 ACTGACACAC
*
93832419 AACAAGCTGACGCCATGTCCTAGATAGGTCT
1 AACAAGCTGACACCATGTCCTAGATAGGTCT
93832450 AACAAGCTGACACCATGTCCTAGATAGGTCT
1 AACAAGCTGACACCATGTCCTAGATAGGTCT
93832481 TACACTAGCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.23
Consensus pattern (31 bp):
AACAAGCTGACACCATGTCCTAGATAGGTCT
Found at i:93832558 original size:124 final size:124
Alignment explanation
Indices: 93832338--93832573 Score: 454
Period size: 124 Copynumber: 1.9 Consensus size: 124
93832328 GAGGCCGATG
93832338 CCATGTCCCAGATAGGTCTTACACTAGCTCTCATCTATTGGTGTCGATGCCATGTCGTAGACAGG
1 CCATGTCCCAGATAGGTCTTACACTAGCTCTCATCTATTGGTGTCGATGCCATGTCGTAGACAGG
93832403 TCTTACACTGACACACAACAAGCTGACGCCATGTCCTAGATAGGTCTAACAAGCTGACA
66 TCTTACACTGACACACAACAAGCTGACGCCATGTCCTAGATAGGTCTAACAAGCTGACA
*
93832462 CCATGTCCTAGATAGGTCTTACACTAGCTCTCATCTATTGGTGTCGATGCCATGTCGTAGACAGG
1 CCATGTCCCAGATAGGTCTTACACTAGCTCTCATCTATTGGTGTCGATGCCATGTCGTAGACAGG
*
93832527 TCTTACATTGACACACAACAAGCTGACGCCATGTCCTAGATAGGTCT
66 TCTTACACTGACACACAACAAGCTGACGCCATGTCCTAGATAGGTCT
93832574 TACACTAGCT
Statistics
Matches: 110, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
124 110 1.00
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (124 bp):
CCATGTCCCAGATAGGTCTTACACTAGCTCTCATCTATTGGTGTCGATGCCATGTCGTAGACAGG
TCTTACACTGACACACAACAAGCTGACGCCATGTCCTAGATAGGTCTAACAAGCTGACA
Found at i:93838296 original size:29 final size:28
Alignment explanation
Indices: 93838237--93838296 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 28
93838227 ACAGGGGTTT
*
93838237 TCACACGGCCAAGCACATGCCCGTGTCTC
1 TCACACGGCCAA-CACACGCCCGTGTCTC
*
93838266 TCACACGGCCTAA-ACACGCCCTTGTCATC
1 TCACACGGCC-AACACACGCCCGTGTC-TC
93838295 TC
1 TC
93838297 CCTTATTCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
28 11 0.41
29 14 0.52
30 2 0.07
ACGTcount: A:0.22, C:0.42, G:0.17, T:0.20
Consensus pattern (28 bp):
TCACACGGCCAACACACGCCCGTGTCTC
Found at i:93845886 original size:12 final size:12
Alignment explanation
Indices: 93845869--93845931 Score: 51
Period size: 12 Copynumber: 5.1 Consensus size: 12
93845859 TTTTAATAAG
93845869 ATTTAATATTAA
1 ATTTAATATTAA
93845881 ATTTAATA-TAA
1 ATTTAATATTAA
*
93845892 TATTT-ATCAAGATAA
1 -ATTTAAT--A-TTAA
93845907 ATATT-ATATTAA
1 AT-TTAATATTAA
93845919 ATTTAATATTAA
1 ATTTAATATTAA
93845931 A
1 A
93845932 GTTTTTAAGT
Statistics
Matches: 43, Mismatches: 1, Indels: 14
0.74 0.02 0.24
Matches are distributed among these distances:
11 7 0.16
12 25 0.58
13 2 0.05
14 2 0.05
15 7 0.16
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (12 bp):
ATTTAATATTAA
Found at i:93845906 original size:59 final size:58
Alignment explanation
Indices: 93845796--93845926 Score: 165
Period size: 59 Copynumber: 2.2 Consensus size: 58
93845786 TCCAAAAATA
* * * **
93845796 ATATTATTTTAAT-AGTTTAATATTAAATTTAATTTAATGTTTTTCTTGATAAACATT
1 ATATTATTTTAATAAGTTTAATATTAAATTTAATATAATATTTATCAAGATAAACATT
* *
93845853 CTATTATTTTAATAAGATTTAATATTAAATTTAATATAATATTTATCAAGATAAATATT
1 ATATTATTTTAATAAG-TTTAATATTAAATTTAATATAATATTTATCAAGATAAACATT
*
93845912 ATATTAAATTTAATA
1 ATATT-ATTTTAATA
93845927 TTAAAGTTTT
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
57 12 0.19
58 2 0.03
59 40 0.65
60 8 0.13
ACGTcount: A:0.43, C:0.03, G:0.04, T:0.50
Consensus pattern (58 bp):
ATATTATTTTAATAAGTTTAATATTAAATTTAATATAATATTTATCAAGATAAACATT
Found at i:93847643 original size:40 final size:41
Alignment explanation
Indices: 93847598--93847680 Score: 150
Period size: 40 Copynumber: 2.0 Consensus size: 41
93847588 TGTTGATTAG
*
93847598 TCCTTAGAGAATTGATCGTTTACTATTTTGACCA-GAAAGA
1 TCCTTAGAGAATTGATCATTTACTATTTTGACCAGGAAAGA
93847638 TCCTTAGAGAATTGATCATTTACTATTTTGACCAGGAAAGA
1 TCCTTAGAGAATTGATCATTTACTATTTTGACCAGGAAAGA
93847679 TC
1 TC
93847681 ATACGGTATT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
40 33 0.80
41 8 0.20
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.35
Consensus pattern (41 bp):
TCCTTAGAGAATTGATCATTTACTATTTTGACCAGGAAAGA
Found at i:93848497 original size:35 final size:35
Alignment explanation
Indices: 93848457--93848526 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
93848447 CATTACTCAT
93848457 TTCCATTTAATTCATGATCCACTGGCCTACATTTA
1 TTCCATTTAATTCATGATCCACTGGCCTACATTTA
93848492 TTCCATTTAATTCATGATCCACTGGCCTACATTTA
1 TTCCATTTAATTCATGATCCACTGGCCTACATTTA
93848527 ACTTACCTGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.26, C:0.26, G:0.09, T:0.40
Consensus pattern (35 bp):
TTCCATTTAATTCATGATCCACTGGCCTACATTTA
Found at i:93849878 original size:50 final size:49
Alignment explanation
Indices: 93849766--93849997 Score: 270
Period size: 49 Copynumber: 4.7 Consensus size: 49
93849756 GTAGTACGCA
* *
93849766 TAGTAGCCTACACTTAGTACTACACATGCAACCAATTATCTGGTACATG
1 TAGTAGCCTACACTTAGTACTACACACGTAACCAATTATCTGGTACATG
* ** *
93849815 TAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTGATACATG
1 TAGTAGCCTACACTTAGTACTACACACGTAACC-AATTATCTGGTACATG
* * *
93849865 TAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTATCGGGT--ATG
1 TAGTAGCCTACACTTAGTACTACACACGT-AACCAA-TTATCTGGTACATG
* * * * *
93849914 CATAGTAGCCTGCACTTAGTACTACACATGCAACCAATTATCCGGTACACG
1 --TAGTAGCCTACACTTAGTACTACACACGTAACCAATTATCTGGTACATG
*
93849965 TAGTAGCCTGCACTTAGTACTACACACGTAACC
1 TAGTAGCCTACACTTAGTACTACACACGTAACC
93849998 TCACAATAGA
Statistics
Matches: 154, Mismatches: 22, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
49 72 0.47
50 48 0.31
51 34 0.22
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTACACTTAGTACTACACACGTAACCAATTATCTGGTACATG
Found at i:93853986 original size:18 final size:18
Alignment explanation
Indices: 93853953--93854010 Score: 77
Period size: 18 Copynumber: 3.4 Consensus size: 18
93853943 AAGGTTTTCT
93853953 TATTGATGATA-T--CGA
1 TATTGATGATAGTGACGA
93853968 TATTGATGATAGTGACGA
1 TATTGATGATAGTGACGA
* *
93853986 TATTGATGCTAGTGACGC
1 TATTGATGATAGTGACGA
93854004 TATTGAT
1 TATTGAT
93854011 CGTGACCTTG
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
15 11 0.29
16 1 0.03
18 26 0.68
ACGTcount: A:0.29, C:0.09, G:0.24, T:0.38
Consensus pattern (18 bp):
TATTGATGATAGTGACGA
Found at i:93854959 original size:28 final size:28
Alignment explanation
Indices: 93854919--93854984 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 28
93854909 CCATCGCAAA
* * * *
93854919 AACAGTATCAGGTGGGTCTTAGCCCAAT
1 AACAGAATCAGGTAGGCCTAAGCCCAAT
*
93854947 AACAGAATTAGGTAGGCCTAAGCCCAAT
1 AACAGAATCAGGTAGGCCTAAGCCCAAT
93854975 -ACAGAATCAG
1 AACAGAATCAG
93854985 TATCAGATGC
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
27 9 0.28
28 23 0.72
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (28 bp):
AACAGAATCAGGTAGGCCTAAGCCCAAT
Found at i:93857655 original size:28 final size:27
Alignment explanation
Indices: 93857623--93857676 Score: 81
Period size: 28 Copynumber: 2.0 Consensus size: 27
93857613 AAATAGTATC
* *
93857623 AGGTGGGCCTTAGCCTAATAACAGAATT
1 AGGTGGGCCTAAGCCCAAT-ACAGAATT
93857651 AGGTGGGCCTAAGCCCAATACAGAAT
1 AGGTGGGCCTAAGCCCAATACAGAAT
93857677 CAGTATCAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 7 0.29
28 17 0.71
ACGTcount: A:0.33, C:0.20, G:0.26, T:0.20
Consensus pattern (27 bp):
AGGTGGGCCTAAGCCCAATACAGAATT
Found at i:93861682 original size:50 final size:50
Alignment explanation
Indices: 93861608--93861703 Score: 174
Period size: 50 Copynumber: 1.9 Consensus size: 50
93861598 ATTTTGATTG
*
93861608 GGGGCAAAAAAAGTTTTTTGGCATCGCGATACCGAACATTTGGTATCGCT
1 GGGGCAAAAAAAGTTTTTAGGCATCGCGATACCGAACATTTGGTATCGCT
*
93861658 GGGGCCAAAAAAGTTTTTAGGCATCGCGATACCGAACATTTGGTAT
1 GGGGCAAAAAAAGTTTTTAGGCATCGCGATACCGAACATTTGGTAT
93861704 GTAAAGAAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (50 bp):
GGGGCAAAAAAAGTTTTTAGGCATCGCGATACCGAACATTTGGTATCGCT
Found at i:93867132 original size:34 final size:33
Alignment explanation
Indices: 93867094--93867157 Score: 92
Period size: 34 Copynumber: 1.9 Consensus size: 33
93867084 TAGCAGTAAC
*
93867094 AGTCTGGGCCTGAGCCCATTTCAGTATCAGTGGT
1 AGTCTGGACCTGAGCCCATTTCAGTA-CAGTGGT
* *
93867128 AGTCTGGACCTTAGCCTATTTCAGTACAGT
1 AGTCTGGACCTGAGCCCATTTCAGTACAGT
93867158 ATGCAAACAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
33 4 0.15
34 23 0.85
ACGTcount: A:0.20, C:0.23, G:0.25, T:0.31
Consensus pattern (33 bp):
AGTCTGGACCTGAGCCCATTTCAGTACAGTGGT
Found at i:93869917 original size:68 final size:67
Alignment explanation
Indices: 93869845--93869994 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
93869835 CATCATGTGT
* * * *
93869845 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
93869907 ATGTAG
62 ATGTAG
** * *
93869913 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
93869978 AG
66 AG
93869980 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
93869995 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:93869950 original size:64 final size:64
Alignment explanation
Indices: 93869869--93870052 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
93869859 AGACATTATG
* *
93869869 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
93869933 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
93869998 AA
63 AA
* * * *
93870000 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
93870053 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:93877172 original size:23 final size:23
Alignment explanation
Indices: 93877140--93877227 Score: 106
Period size: 23 Copynumber: 3.8 Consensus size: 23
93877130 AACATGTAAT
*
93877140 ATTCTGTTAAGCCTTTGTGGCAC
1 ATTCTATTAAGCCTTTGTGGCAC
*
93877163 ATTCTATTAAGCCTTTGCGGC-C
1 ATTCTATTAAGCCTTTGTGGCAC
* * *
93877185 TATTTTATAAAGCCTTTGTGGCAT
1 -ATTCTATTAAGCCTTTGTGGCAC
*
93877209 ATTCTGTTAAGCCTTTGTG
1 ATTCTATTAAGCCTTTGTG
93877228 ATGCATTCTG
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
22 1 0.02
23 53 0.98
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (23 bp):
ATTCTATTAAGCCTTTGTGGCAC
Found at i:93884417 original size:22 final size:22
Alignment explanation
Indices: 93884392--93884453 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
93884382 CCACGTTCAG
93884392 GCTATGGCTCAACACAGGGGCT
1 GCTATGGCTCAACACAGGGGCT
* * * *
93884414 GCTACGGCTAAACATAAGGGCT
1 GCTATGGCTCAACACAGGGGCT
* *
93884436 GTTATGACTCAACACAGG
1 GCTATGGCTCAACACAGG
93884454 ATGTGTGTCA
Statistics
Matches: 30, Mismatches: 10, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.29, C:0.24, G:0.27, T:0.19
Consensus pattern (22 bp):
GCTATGGCTCAACACAGGGGCT
Found at i:93887028 original size:14 final size:15
Alignment explanation
Indices: 93887002--93887035 Score: 61
Period size: 14 Copynumber: 2.3 Consensus size: 15
93886992 TAACTAATCT
93887002 AATAAATTAAAATAA
1 AATAAATTAAAATAA
93887017 AATAAA-TAAAATAA
1 AATAAATTAAAATAA
93887031 AATAA
1 AATAA
93887036 TAACTTCCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 13 0.68
15 6 0.32
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (15 bp):
AATAAATTAAAATAA
Found at i:93887034 original size:5 final size:5
Alignment explanation
Indices: 93887002--93887035 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
93886992 TAACTAATCT
*
93887002 AATAA ATTAA AATAA AAT-A AATAA AATAA AATAA
1 AATAA AATAA AATAA AATAA AATAA AATAA AATAA
93887036 TAACTTCCTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (5 bp):
AATAA
Found at i:93896228 original size:29 final size:27
Alignment explanation
Indices: 93896186--93896264 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 27
93896176 GGCTGGTTTT
93896186 CAGCACTAAGTGTGCGGGTTTAAATTGTA
1 CAGCACTAAGTGTGCGGGTTTAAA--GTA
*
93896215 CAGCACTAAGTGTGCGAGTTTAAAGTA
1 CAGCACTAAGTGTGCGGGTTTAAAGTA
93896242 CATGGCACTAAGTGTGCGCGGTT
1 CA--GCACTAAGTGTGCG-GGTT
93896265 GATTATTAAG
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
27 5 0.11
29 37 0.82
30 3 0.07
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (27 bp):
CAGCACTAAGTGTGCGGGTTTAAAGTA
Found at i:93896532 original size:173 final size:174
Alignment explanation
Indices: 93896217--93896543 Score: 566
Period size: 173 Copynumber: 1.9 Consensus size: 174
93896207 AAATTGTACA
* *
93896217 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* * *
93896282 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
93896347 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * *
93896391 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
93896456 TGTGC-AACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
93896520 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
93896544 ACCTTGAGTT
Statistics
Matches: 144, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
173 80 0.56
174 64 0.44
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:93904324 original size:29 final size:27
Alignment explanation
Indices: 93904291--93904369 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 27
93904281 GGTTGGTTTT
93904291 CAGCACTAAGTGTGCGGGTTTAAATTGTA
1 CAGCACTAAGTGTGCGGGTTTAAA--GTA
*
93904320 CAGCACTAAGTGTGCGAGTTTAAAGTA
1 CAGCACTAAGTGTGCGGGTTTAAAGTA
93904347 CATGGCACTAAGTGTGCGCGGTT
1 CA--GCACTAAGTGTGCG-GGTT
93904370 GATTATTAAG
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
27 5 0.11
29 37 0.82
30 3 0.07
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (27 bp):
CAGCACTAAGTGTGCGGGTTTAAAGTA
Found at i:93907538 original size:19 final size:19
Alignment explanation
Indices: 93907514--93907552 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
93907504 GATAGATCAA
93907514 TTGGCTTTCTTCTAGTAAT
1 TTGGCTTTCTTCTAGTAAT
93907533 TTGGCTTTCTTCTAGTAAT
1 TTGGCTTTCTTCTAGTAAT
93907552 T
1 T
93907553 CCTTGCTTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.15, C:0.15, G:0.15, T:0.54
Consensus pattern (19 bp):
TTGGCTTTCTTCTAGTAAT
Found at i:93915168 original size:12 final size:13
Alignment explanation
Indices: 93915151--93915188 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
93915141 ATCCTAGAAT
93915151 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
93915163 ATTAAGAACACATA
1 ATTAAGAACA-AGA
93915177 ATTAAGAACAAG
1 ATTAAGAACAAG
93915189 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:93924511 original size:21 final size:19
Alignment explanation
Indices: 93924462--93924500 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
93924452 TGTTATGATT
*
93924462 ATTGATATATGTGTGCATG
1 ATTGACATATGTGTGCATG
93924481 ATTGACATATGTGTGCATG
1 ATTGACATATGTGTGCATG
93924500 A
1 A
93924501 GCATTGAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.08, G:0.26, T:0.38
Consensus pattern (19 bp):
ATTGACATATGTGTGCATG
Found at i:93924563 original size:40 final size:40
Alignment explanation
Indices: 93924504--93924733 Score: 417
Period size: 40 Copynumber: 5.8 Consensus size: 40
93924494 TGCATGAGCA
93924504 TTGA-ATATCCGGGCTAAGACCCGAAGGCAATTATGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAG
93924543 TTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAG
93924583 TTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAG
93924623 TTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAG
* *
93924663 ATGATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAG
1 TTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAG
* *
93924703 TTGATATGTCCGGGTTAAGACCCGAAGGCAA
1 TTGATATATCCGGGCTAAGACCCGAAGGCAA
93924734 ATGTGTTTGC
Statistics
Matches: 185, Mismatches: 5, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
39 4 0.02
40 181 0.98
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
TTGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAG
Found at i:93933259 original size:40 final size:40
Alignment explanation
Indices: 93933204--93933391 Score: 331
Period size: 40 Copynumber: 4.7 Consensus size: 40
93933194 GAGCATTGGA
93933204 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
93933244 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
93933284 ATATATCCGGGCTAAGACCTGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
93933324 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
93933364 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
93933392 ATGTGTTTGC
Statistics
Matches: 141, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 141 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:93937063 original size:16 final size:18
Alignment explanation
Indices: 93937029--93937066 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
93937019 ATCCTTATTT
*
93937029 AAATAAAATATAATGGTA
1 AAATAAAATATAATAGTA
93937047 AAATAAAATA-AA-AGTA
1 AAATAAAATATAATAGTA
93937063 AAAT
1 AAAT
93937067 CCAAATAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 7 0.37
17 2 0.11
18 10 0.53
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (18 bp):
AAATAAAATATAATAGTA
Found at i:93941900 original size:11 final size:11
Alignment explanation
Indices: 93941881--93941913 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
93941871 ATTAAACCAT
*
93941881 TATTA-TTAAC
1 TATTATTTAAA
93941891 TATTATTTAAA
1 TATTATTTAAA
93941902 TATTATTTAAA
1 TATTATTTAAA
93941913 T
1 T
93941914 TGGATAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 5 0.24
11 16 0.76
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (11 bp):
TATTATTTAAA
Found at i:93942103 original size:12 final size:12
Alignment explanation
Indices: 93942088--93942112 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
93942078 AAAATTCCAT
93942088 AAAAAAAAAGAA
1 AAAAAAAAAGAA
93942100 AAAAAAAAAGAA
1 AAAAAAAAAGAA
93942112 A
1 A
93942113 GAAAGTTGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAGAA
Found at i:93947957 original size:34 final size:34
Alignment explanation
Indices: 93947887--93947957 Score: 79
Period size: 34 Copynumber: 2.1 Consensus size: 34
93947877 TGTTGGGTTG
* * **
93947887 TATGGCTGAGTGTTGTGCAAATGACGTGTTACTC
1 TATGGCTAAGTGTGGTGCAAATGACGAATTACTC
* * *
93947921 TATGGCTAAGTGTGGTTCAAATGATGAATTATTC
1 TATGGCTAAGTGTGGTGCAAATGACGAATTACTC
93947955 TAT
1 TAT
93947958 AGTTGAATGT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.25, C:0.11, G:0.25, T:0.38
Consensus pattern (34 bp):
TATGGCTAAGTGTGGTGCAAATGACGAATTACTC
Found at i:93949859 original size:13 final size:13
Alignment explanation
Indices: 93949841--93949866 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
93949831 AAATAAAGTG
93949841 ATAAAAATAAAAA
1 ATAAAAATAAAAA
93949854 ATAAAAATAAAAA
1 ATAAAAATAAAAA
93949867 TGCAAGACGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
ATAAAAATAAAAA
Found at i:93952534 original size:42 final size:43
Alignment explanation
Indices: 93952446--93952565 Score: 106
Period size: 42 Copynumber: 2.9 Consensus size: 43
93952436 CCGTATCAAT
* * * *
93952446 GCCATATCCCGGACATGGTCTTACATGAAAT-ATCATATCGAC
1 GCCATATACCAGACATGGTCTTATATGAAATCATCAAATCGAC
* * *
93952488 GCCATGT-CCTTGACATGGTCTTATATGAAATCA-CACAAT-GAT
1 GCCATATACC-AGACATGGTCTTATATGAAATCATCA-AATCGAC
* *
93952530 GCCATATACCAGATATGGTCTTATACGAAATC-TCAA
1 GCCATATACCAGACATGGTCTTATATGAAATCATCAA
93952566 TAGCTCTAAT
Statistics
Matches: 64, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
41 3 0.05
42 56 0.88
43 5 0.08
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (43 bp):
GCCATATACCAGACATGGTCTTATATGAAATCATCAAATCGAC
Found at i:93953640 original size:13 final size:13
Alignment explanation
Indices: 93953624--93953649 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
93953614 GCCCAAATGT
93953624 CAAAATTTTCAAA
1 CAAAATTTTCAAA
93953637 CAAAATTTTCAAA
1 CAAAATTTTCAAA
93953650 AAATCATTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
CAAAATTTTCAAA
Found at i:93955128 original size:44 final size:44
Alignment explanation
Indices: 93955064--93955156 Score: 116
Period size: 44 Copynumber: 2.1 Consensus size: 44
93955054 AATATAAGAA
* *
93955064 TTGTAATTTCAGTCTACTCCATTGTAACTTCAAGGAGATCAGAC
1 TTGTAATTTCAGTCTACTCCACTGCAACTTCAAGGAGATCAGAC
* * * *
93955108 TTGTAACTTT-AGTCTGCTCCACTGCAACTTTAGGGAGATGAGAC
1 TTGTAA-TTTCAGTCTACTCCACTGCAACTTCAAGGAGATCAGAC
93955152 TTGTA
1 TTGTA
93955157 TCTTCAATTT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
44 39 0.93
45 3 0.07
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.34
Consensus pattern (44 bp):
TTGTAATTTCAGTCTACTCCACTGCAACTTCAAGGAGATCAGAC
Found at i:93955295 original size:51 final size:51
Alignment explanation
Indices: 93955176--93955438 Score: 176
Period size: 51 Copynumber: 5.4 Consensus size: 51
93955166 TACTCAGCTA
* *
93955176 CAACTTTAGAGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTG
1 CAACTTTAGGGAAATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTG
* * * * *
93955227 CAAATTCA-GAAAGATAAGATTTGTAACTTGTAGCTTTAATCTTTTCCATTG
1 CAACTTTAGGGAA-ATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTG
* ** **
93955278 CAACTTTAGGGAAATAAGATTT-T--C---TATCTTTAATCTACTATACTG
1 CAACTTTAGGGAAATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTG
* * * * * * * *
93955323 CAACTTCAGAGAGAT--GA---G--ATTTGTAGCTTCAACCTGCTCCACCG
1 CAACTTTAGGGAAATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTG
* * * * **
93955367 TAACTTTAGGGAGATAAGATATGCAACTTGTAGCTTTAATCTACTCCACTG
1 CAACTTTAGGGAAATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTG
*
93955418 CAACTTCAGGGAAATAAGATT
1 CAACTTTAGGGAAATAAGATT
93955439 CGCTATTTTC
Statistics
Matches: 159, Mismatches: 39, Indels: 28
0.70 0.17 0.12
Matches are distributed among these distances:
43 2 0.01
44 26 0.16
45 27 0.17
46 2 0.01
48 1 0.01
49 1 0.01
50 2 0.01
51 95 0.60
52 3 0.02
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.34
Consensus pattern (51 bp):
CAACTTTAGGGAAATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTG
Found at i:93955325 original size:45 final size:45
Alignment explanation
Indices: 93955076--93956030 Score: 258
Period size: 44 Copynumber: 20.8 Consensus size: 45
93955066 GTAATTTCAG
* * * * * * * *
93955076 TCTACTCCATTGTAACTTCAAGGAGATCAGA-CTTGTAACTTTAG
1 TCTACTCCACTGCAACTTTAGGGAGATAAGATTTTGTATCTTTAA
* * * *
93955120 TCTGCTCCACTGCAACTTTAGGGAGATGAGA-CTTGTATCTTCAA
1 TCTACTCCACTGCAACTTTAGGGAGATAAGATTTTGTATCTTTAA
* * * *
93955164 TTTACT-CAGCTACAACTTTAGAGAGATAAGATTTGTAACTTGTAGCTTTAA
1 TCTACTCCA-CTGCAACTTTAGGGAGATAAGA--T-T---TTGTATCTTTAA
** * * ** *
93955215 TCTGTTCCACTGCAAATTCAGAAAGATAAGATTTGTAACTTGTAGCTTTAA
1 TCTACTCCACTGCAACTTTAGGGAGATAAGA--T-T---TTGTATCTTTAA
** * * *
93955266 TCTTTTCCATTGCAACTTTAGGGAAATAAGATTTTCTATCTTTAA
1 TCTACTCCACTGCAACTTTAGGGAGATAAGATTTTGTATCTTTAA
** * * * * *
93955311 TCTACTATACTGCAACTTCAGAGAGATGAGA-TTTGTAGCTTCAA
1 TCTACTCCACTGCAACTTTAGGGAGATAAGATTTTGTATCTTTAA
* * * * *
93955355 CCTGCTCCACCGTAACTTTAGGGAGATAAGATATGCAACTTGTAGCTTTAA
1 TCTACTCCACTGCAACTTTAGGGAGATAAGAT-T-----TTGTATCTTTAA
* * *
93955406 TCTACTCCACTGCAACTTCAGGGAAATAAGA-TTCGCTAT-TTTCAA
1 TCTACTCCACTGCAACTTTAGGGAGATAAGATTTTG-TATCTTT-AA
93955451 TCTACTCCACTGCAACTTTAGGGAGATAAG-TTTTGTATC--T-A
1 TCTACTCCACTGCAACTTTAGGGAGATAAGATTTTGTATCTTTAA
* ** * * * * * * *
93955492 --T--TCCATTATAAATTCAGGGAGGTAA-AATTAGTAACTTTGA
1 TCTACTCCACTGCAACTTTAGGGAGATAAGATTTTGTATCTTTAA
** * * *
93955532 TCTTTTCCATTGCAACTTTAGGGAGATAAGATTTGTGGCTTTAAGCTTTAG
1 TCTACTCCACTGCAACTTTAGGGAGATAAGATTT-T-G---T-ATCTTTAA
* * * * *
93955583 TCTATTCCACTACAACTTCA-GGAGATAAG-GTTTGCTATGGTAGATCTAA
1 TCTACTCCACTGCAACTTTAGGGAGATAAGATTTTG-TAT-CT---T-TAA
* * * * ** *
93955632 TCTAAC-CTACTGCAACTTTAGAGG-TATAGGA-CTTGTCGCTTCAA
1 TCT-ACTCCACTGCAACTTTAG-GGAGATAAGATTTTGTATCTTTAA
* * ** ** * * *
93955676 TCTACTCCATTGTAACTCCAATGAGATAAGA-TTAGTAGCTTCAA
1 TCTACTCCACTGCAACTTTAGGGAGATAAGATTTTGTATCTTTAA
* * * * * *
93955720 TCTACTCCACTGTAACTTCAGGGAGATAACA-TTAGTAGCTTCAA
1 TCTACTCCACTGCAACTTTAGGGAGATAAGATTTTGTATCTTTAA
* * * * * *
93955764 TCTATTCCACTGTAACTTCATGGAGATAAGACTTGTAACTTGTAGCTTTAG
1 TCTACTCCACTGCAACTTTAGGGAGATAAGA--T-T---TTGTATCTTTAA
* * * **
93955815 TCTATTCCACTGTAACTTCAGGGAGATAAGATTGCTATGGTAGATTTAA
1 TCTACTCCACTGCAACTTTAGGGAGATAAGATT--T-T-GTATCTTTAA
* * * * * * *
93955864 TCTGAC-CTATTACAACTTCAGAGG-TATAGGA--CT-TATCGTTTCAA
1 TCT-ACTCCACTGCAACTTTAG-GGAGATAAGATTTTGTATC-TTT-AA
* * *
93955908 TCTGCTCCACTGAAACTTTAGGGAGATAAGA-TTTGTAGCTTTAA
1 TCTACTCCACTGCAACTTTAGGGAGATAAGATTTTGTATCTTTAA
* * *
93955952 TCTGCTCTACTGCAACTTTAGAGAGATAAGA-TTTGCTATCTTTAA
1 TCTACTCCACTGCAACTTTAGGGAGATAAGATTTTG-TATCTTTAA
**
93955997 TCTACTCCACTATAACTTTAGGGAGATAAGATTT
1 TCTACTCCACTGCAACTTTAGGGAGATAAGATTT
93956031 GCCATAATGA
Statistics
Matches: 685, Mismatches: 161, Indels: 128
0.70 0.17 0.13
Matches are distributed among these distances:
37 24 0.04
39 2 0.00
40 1 0.00
41 1 0.00
42 3 0.00
43 12 0.02
44 269 0.39
45 111 0.16
46 6 0.01
47 4 0.01
48 7 0.01
49 49 0.07
50 21 0.03
51 173 0.25
52 2 0.00
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (45 bp):
TCTACTCCACTGCAACTTTAGGGAGATAAGATTTTGTATCTTTAA
Found at i:93955438 original size:95 final size:96
Alignment explanation
Indices: 93955305--93955480 Score: 237
Period size: 95 Copynumber: 1.8 Consensus size: 96
93955295 GATTTTCTAT
* * * * * *
93955305 CTTTAATCTACTATACTGCAACTTCAGAGAGATGAGATTTG-TAGCTTCAACCTGCTCCACCGTA
1 CTTTAATCTACTACACTGCAACTTCAGAGAAATAAGATTCGCTAGCTTCAACCTACTCCACCGCA
93955369 ACTTTAGGGAGATAAGATATGCAACTTGTAG
66 ACTTTAGGGAGATAAGATATGCAACTTGTAG
* * ** * *
93955400 CTTTAATCTACTCCACTGCAACTTCAGGGAAATAAGATTCGCTATTTTCAATCTACTCCACTGCA
1 CTTTAATCTACTACACTGCAACTTCAGAGAAATAAGATTCGCTAGCTTCAACCTACTCCACCGCA
93955465 ACTTTAGGGAGATAAG
66 ACTTTAGGGAGATAAG
93955481 TTTTGTATCT
Statistics
Matches: 68, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
95 35 0.51
96 33 0.49
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.31
Consensus pattern (96 bp):
CTTTAATCTACTACACTGCAACTTCAGAGAAATAAGATTCGCTAGCTTCAACCTACTCCACCGCA
ACTTTAGGGAGATAAGATATGCAACTTGTAG
Found at i:93955791 original size:232 final size:232
Alignment explanation
Indices: 93955504--93956031 Score: 637
Period size: 232 Copynumber: 2.3 Consensus size: 232
93955494 CCATTATAAA
* * * * * *
93955504 TTCAGGGAGGTAAAATTAGTAACTTTGATCTTTTCCATTGCAACTTTAGGGAGATAAGATTTGTG
1 TTCAGGGAGATAAAATTAGTAACTTTAATCTATTCCACTGTAACTTTAGGGAGATAAGATTTGTA
* *
93955569 GCTT-TAAGCTTTAGTCTATTCCACTACAACTTCA-GGAGATAAGGTTTGCTATGGTAGATCTAA
66 ACTTGT-AGCTTTAGTCTATTCCACTACAACTTCAGGGAGATAA-GATTGCTATGGTAGATCTAA
* * * * *
93955632 TCTAACCTACTGCAACTTTAGAGGTATAGGACTTGTCGCTTCAATCTACTCCATTGTAACTCCAA
129 TCTAACCTACTACAACTTCAGAGGTATAGGACTTATCGCTTCAATCTACTCCACTGAAACTCCAA
* *
93955697 TGAGATAAGATTAGTAGCTTCAATCTACTCCACTGTAAC
194 GGAGATAAGATTAGTAGCTTCAATCTACTCCACTGCAAC
* * * * * *
93955736 TTCAGGGAGATAACATTAGTAGCTTCAATCTATTCCACTGTAACTTCATGGAGATAAGACTTGTA
1 TTCAGGGAGATAAAATTAGTAACTTTAATCTATTCCACTGTAACTTTAGGGAGATAAGATTTGTA
** *
93955801 ACTTGTAGCTTTAGTCTATTCCACTGTAACTTCAGGGAGATAAGATTGCTATGGTAGATTTAATC
66 ACTTGTAGCTTTAGTCTATTCCACTACAACTTCAGGGAGATAAGATTGCTATGGTAGATCTAATC
* * * * ** *
93955866 TGACCTATTACAACTTCAGAGGTATAGGACTTATCGTTTCAATCTGCTCCACTGAAACTTTAGGG
131 TAACCTACTACAACTTCAGAGGTATAGGACTTATCGCTTCAATCTACTCCACTGAAACTCCAAGG
* * * *
93955931 AGATAAGATTTGTAGCTTTAATCTGCTCTACTGCAAC
196 AGATAAGATTAGTAGCTTCAATCTACTCCACTGCAAC
* * * * * * *
93955968 TTTAGAGAGATAAGATTTGCTATCTTTAATCTACTCCACTATAACTTTAGGGAGATAAGATTTG
1 TTCAGGGAGATAAAATTAG-TAACTTTAATCTATTCCACTGTAACTTTAGGGAGATAAGATTTG
93956032 CCATAATGAT
Statistics
Matches: 247, Mismatches: 46, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
232 201 0.81
233 46 0.19
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (232 bp):
TTCAGGGAGATAAAATTAGTAACTTTAATCTATTCCACTGTAACTTTAGGGAGATAAGATTTGTA
ACTTGTAGCTTTAGTCTATTCCACTACAACTTCAGGGAGATAAGATTGCTATGGTAGATCTAATC
TAACCTACTACAACTTCAGAGGTATAGGACTTATCGCTTCAATCTACTCCACTGAAACTCCAAGG
AGATAAGATTAGTAGCTTCAATCTACTCCACTGCAAC
Found at i:93955954 original size:44 final size:45
Alignment explanation
Indices: 93955906--93956032 Score: 186
Period size: 45 Copynumber: 2.8 Consensus size: 45
93955896 TTATCGTTTC
93955906 AATCTGCTCCACTGAAACTTTAGGGAGATAAGATTTG-TAGCTTT
1 AATCTGCTCCACTGAAACTTTAGGGAGATAAGATTTGCTAGCTTT
* * * *
93955950 AATCTGCTCTACTGCAACTTTAGAGAGATAAGATTTGCTATCTTT
1 AATCTGCTCCACTGAAACTTTAGGGAGATAAGATTTGCTAGCTTT
*
93955995 AATCTACTCCACT-ATAACTTTAGGGAGATAAGATTTGC
1 AATCTGCTCCACTGA-AACTTTAGGGAGATAAGATTTGC
93956033 CATAATGATT
Statistics
Matches: 73, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
44 34 0.47
45 39 0.53
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (45 bp):
AATCTGCTCCACTGAAACTTTAGGGAGATAAGATTTGCTAGCTTT
Found at i:93959105 original size:12 final size:13
Alignment explanation
Indices: 93959083--93959111 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
93959073 TAATTAAATG
93959083 AATTAAAAAGCCA
1 AATTAAAAAGCCA
93959096 AATT-AAAAGCCA
1 AATTAAAAAGCCA
93959108 AATT
1 AATT
93959112 TTGTCCATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.59, C:0.14, G:0.07, T:0.21
Consensus pattern (13 bp):
AATTAAAAAGCCA
Found at i:93960018 original size:42 final size:42
Alignment explanation
Indices: 93959951--93960066 Score: 144
Period size: 43 Copynumber: 2.7 Consensus size: 42
93959941 AGGGTTACTA
* *
93959951 AGATTATGTGTAATACCATATCTGGGATATGGCATCGATACG
1 AGATTACGTGTAAGACCATATCTGGGATATGGCATCGATACG
* * *
93959993 AGACTT-CGTGTAAGACCATAGCTGGGCTATTGGCATCGATACT
1 AGA-TTACGTGTAAGACCATATCTGGGATA-TGGCATCGATACG
* *
93960036 AGATTACATGTAAGACTATATCTGGGATATG
1 AGATTACGTGTAAGACCATATCTGGGATATG
93960067 ACATTGGTAC
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
42 26 0.42
43 36 0.58
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (42 bp):
AGATTACGTGTAAGACCATATCTGGGATATGGCATCGATACG
Found at i:93967337 original size:19 final size:20
Alignment explanation
Indices: 93967315--93967352 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
93967305 TTAGGAAACT
*
93967315 TAATGCATATG-ATGAAATG
1 TAATGCAGATGAATGAAATG
93967334 TAATGCAGATGAATGAAAT
1 TAATGCAGATGAATGAAAT
93967353 AAATACAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.45, C:0.05, G:0.21, T:0.29
Consensus pattern (20 bp):
TAATGCAGATGAATGAAATG
Found at i:93969105 original size:36 final size:35
Alignment explanation
Indices: 93969044--93969121 Score: 120
Period size: 36 Copynumber: 2.2 Consensus size: 35
93969034 CCTTTAGCTC
* *
93969044 GAATAGTCCCCACACGTAGTTATCGGGTCTTACCCG
1 GAATA-TCTCCACACGTAGTCATCGGGTCTTACCCG
93969080 GACATATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GA-ATATCTCCACACGTAGTCATCGGGTCTTACCCG
93969116 GAATAT
1 GAATAT
93969122 ATTTCCAAGT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
35 4 0.10
36 32 0.82
37 3 0.08
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (35 bp):
GAATATCTCCACACGTAGTCATCGGGTCTTACCCG
Found at i:93969393 original size:48 final size:48
Alignment explanation
Indices: 93969258--93969394 Score: 247
Period size: 48 Copynumber: 2.9 Consensus size: 48
93969248 ATATACACAC
* * *
93969258 ATCTCCTACATATTTCGCACTAGCCATTCGGCTTTACCATATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
93969306 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
93969354 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
93969395 CACATATATA
Statistics
Matches: 86, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 86 1.00
ACGTcount: A:0.29, C:0.30, G:0.07, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:93974044 original size:4 final size:4
Alignment explanation
Indices: 93974012--93974065 Score: 56
Period size: 4 Copynumber: 13.8 Consensus size: 4
93974002 ATCTTGTTTG
* * * * *
93974012 TAAA TATA TAAA -AAA TAAG CAAG TAAA TAAA TAAA TAGA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
93974059 TAAA TAA
1 TAAA TAA
93974066 TAGTTATAAG
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
3 3 0.07
4 38 0.93
ACGTcount: A:0.69, C:0.02, G:0.06, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:93978202 original size:29 final size:29
Alignment explanation
Indices: 93978160--93978248 Score: 117
Period size: 29 Copynumber: 3.1 Consensus size: 29
93978150 AAAGCATGAC
* *
93978160 TATGTATGTGATTTGGGCCTAATGGGCGA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
*
93978189 TATGAATGTGATTTGAGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
* **
93978218 TATGAATGAGA-TTGGGCCTTGTGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
93978246 TAT
1 TAT
93978249 ACATATATGT
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 17 0.32
29 36 0.68
ACGTcount: A:0.24, C:0.12, G:0.31, T:0.33
Consensus pattern (29 bp):
TATGAATGTGATTTGGGCCTAATGGGCCA
Found at i:93984576 original size:45 final size:45
Alignment explanation
Indices: 93984371--93984586 Score: 179
Period size: 46 Copynumber: 4.7 Consensus size: 45
93984361 TTTGTGCGCT
* * * *
93984371 AGTGTAAGACATGTCTGGGACATGCATTAGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGA-GATG-TAGCC
* * * * * *
93984417 AGTGTAAGACCATGTCTGGGATATGGCAAT-GGCATTGAGATGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GC-ATCAGCCTCGAGATG-TAGCC
* * *
93984465 AGTGTAAGACATGTCTGGGGCATGCGTCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGT-AGCC
* *
93984511 AGTGTAAGACATGTCTGGGACATGCATCAG-CTATGAGATGT-GTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCT-CGAGATGTAGCC
93984555 AGTGTAAGAGCATGTCTGGGACATGGCATCAG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAG
93984587 GACGAAGATA
Statistics
Matches: 142, Mismatches: 19, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
44 11 0.08
45 17 0.12
46 65 0.46
47 25 0.18
48 21 0.15
49 3 0.02
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGTAGCC
Found at i:93984605 original size:94 final size:93
Alignment explanation
Indices: 93984368--93984629 Score: 234
Period size: 94 Copynumber: 2.8 Consensus size: 93
93984358 TCATTTGTGC
* * *
93984368 GCTAGTGTAAGACATGTCTGGGACATGCATTA-GCCACA-TTATGAGAGCCAGTGTAAGACCATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGGCGA-AGATATGAGAGCCAGTGTAAGA-CATG
* *
93984431 TCTGGGATATGGCAATGGCATTGAGATGAGA
64 TCTGGGACAT-GCAATAGCATTGAGATGAGA
* * *** *
93984462 GCTAGTGTAAGACATGTCTGGGGCATGCGTC-GGCCTCGAGATGTA-AGCCAGTGTAAGACATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGGCGAAGATATG-AGAGCCAGTGTAAGACATGT
*
93984525 CTGGGACATGC-ATCAGC-TATGAGATGTG-
65 CTGGGACATGCAAT-AGCAT-TGAGATGAGA
* * *
93984553 TC-AGTGTAAGAGCATGTCTGGGACATGGCATCAGGACGAAGATATGAGAGCCAATGTAAGGCCA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGG-CGAAGATATGAGAGCCAGTGTAA-GACA
*
93984617 TGTCTAGGACATG
62 TGTCTGGGACATG
93984630 GCATTGGCCT
Statistics
Matches: 137, Mismatches: 20, Indels: 21
0.77 0.11 0.12
Matches are distributed among these distances:
90 9 0.07
91 17 0.12
92 16 0.12
93 16 0.12
94 63 0.46
95 16 0.12
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.23
Consensus pattern (93 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGGCGAAGATATGAGAGCCAGTGTAAGACATGTC
TGGGACATGCAATAGCATTGAGATGAGA
Found at i:93994949 original size:47 final size:47
Alignment explanation
Indices: 93994881--93995242 Score: 220
Period size: 47 Copynumber: 7.7 Consensus size: 47
93994871 TTTGTGCGCT
93994881 AGTGTAAG-ACATGTCTGGGACAT-GCATCGGCCACATTATGAGAGCC
1 AGTGTAAGAACATGTCTGGGACATGGCATCGG-CACATTATGAGAGCC
* * * *
93994927 AGTGTAAGAACATGTCTAGGACATGGCAAC-G-ACATTGAGACGAGAGCT
1 AGTGTAAGAACATGTCTGGGACATGGCATCGGCACATT---ATGAGAGCC
*
93994975 AGTGTAAG-ACATGTCTGGGACAT-GCATCGGCCACGA-GATGTA-AGCC
1 AGTGTAAGAACATGTCTGGGACATGGCATCGG-CAC-ATTATG-AGAGCC
* * * *
93995021 AGTGTAAG-AGATGTCTGAGG-CAT-GCATCGGC-TATGA-GATGTGTCC
1 AGTGTAAGAACATGTCTG-GGACATGGCATCGGCACATTATGA-GAG-CC
* * * * *
93995066 -GTGTAAGACCATGTCTGGGACATGGCATTGGGTTGA-AGATGTGAGAGCC
1 AGTGTAAGAACATGTCTGGGACATGGCA-TCGG--CACA-TTATGAGAGCC
* * * * *
93995115 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTTGATAGTC
1 AGTGTAAGAACATGTCTGGGACATGGCATCGG-CAC-ATTATGAGAGCC
* *
93995164 AGTGTAAGACCATGTCTGGGACATGGCATC-G-AC-TTGATGGATGAGCT
1 AGTGTAAGAACATGTCTGGGACATGGCATCGGCACATT-AT-GA-GAGCC
* *
93995211 AGTGTAAGACCATGTCTAGGACATGGCATCGG
1 AGTGTAAGAACATGTCTGGGACATGGCATCGG
93995243 TATTACACCC
Statistics
Matches: 251, Mismatches: 34, Indels: 60
0.73 0.10 0.17
Matches are distributed among these distances:
42 1 0.00
43 2 0.01
44 14 0.06
45 19 0.08
46 49 0.20
47 67 0.27
48 21 0.08
49 45 0.18
50 31 0.12
51 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.23
Consensus pattern (47 bp):
AGTGTAAGAACATGTCTGGGACATGGCATCGGCACATTATGAGAGCC
Found at i:93995036 original size:46 final size:48
Alignment explanation
Indices: 93994881--93995242 Score: 272
Period size: 46 Copynumber: 7.6 Consensus size: 48
93994871 TTTGTGCGCT
*
93994881 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCAC-ATTATG-AGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCACGA-GATGTAGAGCC
* * * * * *
93994927 AGTGTAAGAACATGTCTAGGACATGGCAAC-GACATTGAGACG-AGAGCT
1 AGTGTAAG-ACATGTCTGGGACATGGCATCGGCCA-CGAGATGTAGAGCC
93994975 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCACGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCACGAGATGTAGAGCC
* * * *
93995021 AGTGTAAGAGATGTCTGAGG-CAT-GCATCGGCTATGAGATGT-G-TCC
1 AGTGTAAGACATGTCTG-GGACATGGCATCGGCCACGAGATGTAGAGCC
* ***
93995066 -GTGTAAGACCATGTCTGGGACATGGCATTGG-GTTGAAGATGTGAGAGCC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGCCACG-AGATGT-AGAGCC
* * * * *
93995115 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-TTTTGATAGTC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGCCACGAGATGT-AGAGCC
** * *
93995164 AGTGTAAGACCATGTCTGGGACATGGCATC-G--ACTTGATGGATGAGCT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGCCACGAGATGTA-GAGCC
*
93995211 AGTGTAAGACCATGTCTAGGACATGGCATCGG
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGG
93995243 TATTACACCC
Statistics
Matches: 257, Mismatches: 39, Indels: 38
0.77 0.12 0.11
Matches are distributed among these distances:
44 10 0.04
45 14 0.05
46 69 0.27
47 69 0.27
48 22 0.09
49 40 0.16
50 31 0.12
51 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGGCCACGAGATGTAGAGCC
Found at i:93995233 original size:96 final size:97
Alignment explanation
Indices: 93994881--93995242 Score: 285
Period size: 94 Copynumber: 3.8 Consensus size: 97
93994871 TTTGTGCGCT
* * * * *
93994881 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CACATTATGAGAGCCAGTGTAAGAACATGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTAGA-TGTGAGAGCCAGTGTAAGACCATGTC
* * * * *** *
93994943 TAGGACATGGCAACGACATTGA-GACGAGAG-C
65 TAGGACATGGCATCGGCCTCGATTTTGATAGTC
* *
93994974 TAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCAC-GAGATGT-A-AGCCAGTGTAAGA-GAT
1 -AGTGTAAGACCATGTCTGGGACATGGCATC-G--ACTTAGATGTGAGAGCCAGTGTAAGACCAT
** *
93995033 GTCTGAGG-CAT-GCATCGG-CT--A-TGAGATGTGTC
62 GTCT-AGGACATGGCATCGGCCTCGATTTTGAT-AGTC
* * **
93995065 CGTGTAAGACCATGTCTGGGACATGGCATTGGGTTGAAGATGTGAGAGCCAGTGTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTT--AGATGTGAGAGCCAGTGTAAGACCATGT
*
93995130 CTGGGACATGGCATCGGCCTCGATTTTGATAGTC
64 CTAGGACATGGCATCGGCCTCGATTTTGATAGTC
*
93995164 AGTGTAAGACCATGTCTGGGACATGGCATCGACTT-GATG-GATGAGCTAGTGTAAGACCATGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTAGATGTGA-GAGCCAGTGTAAGACCATGTC
93995227 TAGGACATGGCATCGG
65 TAGGACATGGCATCGG
93995243 TATTACACCC
Statistics
Matches: 218, Mismatches: 29, Indels: 40
0.76 0.10 0.14
Matches are distributed among these distances:
89 3 0.01
90 9 0.04
91 17 0.08
92 15 0.07
93 10 0.05
94 59 0.27
95 13 0.06
96 48 0.22
97 5 0.02
99 35 0.16
100 4 0.02
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.23
Consensus pattern (97 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTTAGATGTGAGAGCCAGTGTAAGACCATGTCT
AGGACATGGCATCGGCCTCGATTTTGATAGTC
Found at i:94000410 original size:20 final size:20
Alignment explanation
Indices: 94000365--94000411 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 20
94000355 TTACTTTGCT
*
94000365 TTTCTTTTTAGGATATTTTAA
1 TTTC-TTTTAAGATATTTTAA
*
94000386 GTTCTTTTAAGATATTTCT-A
1 TTTCTTTTAAGATATTT-TAA
94000406 TTTCTT
1 TTTCTT
94000412 GCATAAATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.21, C:0.09, G:0.09, T:0.62
Consensus pattern (20 bp):
TTTCTTTTAAGATATTTTAA
Found at i:94006262 original size:38 final size:38
Alignment explanation
Indices: 94006210--94006352 Score: 153
Period size: 38 Copynumber: 3.7 Consensus size: 38
94006200 ATGAATTGTT
* *
94006210 ACACCAGCATGAAGCCTGCTAGGCATC-AAGCCCGATAA
1 ACACCAGCACGAAGCCTGCTAGGC-TCAAAGCTCGATAA
* ** *
94006248 ACACCGGCACGAAGCCTATTAGGCTCAAAGCTCTATAA
1 ACACCAGCACGAAGCCTGCTAGGCTCAAAGCTCGATAA
* * * *
94006286 GTCATCAGCATGAAGCTTGCTAGGCTCAAAGCTCGATAA
1 -ACACCAGCACGAAGCCTGCTAGGCTCAAAGCTCGATAA
* *
94006325 ACACCAGTACGAGGCCTGCTAGGCTCAA
1 ACACCAGCACGAAGCCTGCTAGGCTCAA
94006353 GGCCCAATAC
Statistics
Matches: 83, Mismatches: 20, Indels: 4
0.78 0.19 0.04
Matches are distributed among these distances:
37 2 0.02
38 51 0.61
39 30 0.36
ACGTcount: A:0.32, C:0.29, G:0.22, T:0.17
Consensus pattern (38 bp):
ACACCAGCACGAAGCCTGCTAGGCTCAAAGCTCGATAA
Found at i:94015441 original size:46 final size:45
Alignment explanation
Indices: 94015226--94015450 Score: 199
Period size: 46 Copynumber: 4.9 Consensus size: 45
94015216 TCTTACACAT
* *
94015226 ATCT-ATGCCGATGCCATATCCCAGATATGGTCTTACACTAGCTCTC
1 ATCTCATGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTC
* * * * *
94015272 ATATATCTGTGCCAATACATGTCCCAGACATGTCTTACACTAG--CAC
1 --ATCTC-ATGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTC
* * *
94015318 ATCTCGTAGTCGATGCATGTCCCAGACATGTCTTACA-TTGCT-TAC
1 ATCTCAT-GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-C
* * *
94015363 ATCTCGAGGCCGATACATGTCCCAGACTTGTCTTACACTAGCTCTC
1 ATCTC-ATGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTC
* *
94015409 GTCTCAATGCCGATGCATGTCCCAAACATGTCTTACACTAGC
1 ATCTC-ATGCCGATGCATGTCCCAGACATGTCTTACACTAGC
94015451 ATTTTATAAT
Statistics
Matches: 143, Mismatches: 25, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
43 4 0.03
44 30 0.21
45 32 0.22
46 43 0.30
47 1 0.01
48 15 0.10
49 12 0.08
50 6 0.04
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.29
Consensus pattern (45 bp):
ATCTCATGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTC
Found at i:94027463 original size:40 final size:40
Alignment explanation
Indices: 94027417--94027597 Score: 265
Period size: 40 Copynumber: 4.5 Consensus size: 40
94027407 TACTCGCCTG
94027417 AATGCCTTCGGGACTTAGCCCGGTCATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGTCATAGTAACTCGCACA
* * *
94027457 AATGCCTTTGGAACTTAACCCGGTCATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGTCATAGTAACTCGCACA
* *
94027497 AATGCCTTCGGGACTTAACCCGGTTATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGTCATAGTAACTCGCACA
* * * *
94027537 ATTGCCTTCGGGACTTAGCCCGG-AATTAGTCACTAGCACA
1 AATGCCTTCGGGACTTAGCCCGGTCA-TAGTAACTCGCACA
94027577 AATGCCTTCGGGACTTAGCCC
1 AATGCCTTCGGGACTTAGCCC
94027598 AGTTATTATC
Statistics
Matches: 128, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
39 1 0.01
40 127 0.99
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGTCATAGTAACTCGCACA
Found at i:94031729 original size:28 final size:28
Alignment explanation
Indices: 94031663--94031841 Score: 245
Period size: 28 Copynumber: 6.4 Consensus size: 28
94031653 GAGATTGGCG
* * *
94031663 CTAAGTGTGCGGGTTTAAAT-TGTACGGCA
1 CTAAGTGTGCGAGTTTGATTATGTA--GCA
94031692 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
94031720 CTAAGTGTGCGAGTTTGATTACGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
94031748 CTAAGTGTGCGAGTTTGATTACGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
* *
94031776 CTAAGTGTGCGAGTTTGATTATATATCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
94031804 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
94031831 CTGAGTGTGCG
1 CTAAGTGTGCG
94031842 GACTTAATAT
Statistics
Matches: 140, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
27 23 0.16
28 96 0.69
29 17 0.12
30 4 0.03
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATGTAGCA
Found at i:94039180 original size:30 final size:30
Alignment explanation
Indices: 94039141--94039220 Score: 115
Period size: 30 Copynumber: 2.7 Consensus size: 30
94039131 AGCCGAAACT
*
94039141 ATCCCTTTTCATAATTTGATGGTCGTCACC
1 ATCCCTTTTCATAATTTGATGGTCATCACC
* * * *
94039171 ATTCTTTTTCATAGTTCGATGGTCATCACC
1 ATCCCTTTTCATAATTTGATGGTCATCACC
94039201 ATCCCTTTTCATAATTTGAT
1 ATCCCTTTTCATAATTTGAT
94039221 AGCCAAAACT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.21, C:0.24, G:0.11, T:0.44
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTGATGGTCATCACC
Found at i:94039312 original size:30 final size:29
Alignment explanation
Indices: 94039199--94039340 Score: 122
Period size: 30 Copynumber: 4.7 Consensus size: 29
94039189 ATGGTCATCA
* ** *
94039199 CCATCCCTTTTCATAATTTGATAGCCAAAA
1 CCATCCCTTTTCAT-AGTTGATAGCTGAAG
* * * *
94039229 CTATCCCATTTCATAGAGTGATATCTGAAG
1 CCATCCCTTTTCATAG-TTGATAGCTGAAG
* * *
94039259 CTATCCCTTTTCTTAGATTGATAGTTGAAG
1 CCATCCCTTTTCATAG-TTGATAGCTGAAG
*
94039289 CCATCCCTTTTCATAGTTCGATAGCCGAAG
1 CCATCCCTTTTCATAGTT-GATAGCTGAAG
*
94039319 CCATCCCTTTCCATAGTCTGAT
1 CCATCCCTTTTCATAGT-TGAT
94039341 GGTCATCACC
Statistics
Matches: 91, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
29 3 0.03
30 87 0.96
31 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.35
Consensus pattern (29 bp):
CCATCCCTTTTCATAGTTGATAGCTGAAG
Found at i:94042791 original size:26 final size:27
Alignment explanation
Indices: 94042697--94042822 Score: 110
Period size: 27 Copynumber: 4.7 Consensus size: 27
94042687 AGTCAGTCCA
** * *
94042697 TTCAGAGTTTTCCACAAAGGCTATTCA
1 TTCAGAGTTCACCACAAAGACTATTCT
* ** * *
94042724 TTCAAAGTTTTCCATAAAGGCTATTCT
1 TTCAGAGTTCACCACAAAGACTATTCT
* * *
94042751 TTCAGAGCTCGCCACAAATACTATT-T
1 TTCAGAGTTCACCACAAAGACTATTCT
* *
94042777 TTCAAAGTTCACCACAAAGGCTATTCT
1 TTCAGAGTTCACCACAAAGACTATTCT
*
94042804 TTCAGAGTTCATCACAAAG
1 TTCAGAGTTCACCACAAAG
94042823 GCTAACAAAA
Statistics
Matches: 81, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
26 21 0.26
27 60 0.74
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.33
Consensus pattern (27 bp):
TTCAGAGTTCACCACAAAGACTATTCT
Found at i:94044535 original size:27 final size:27
Alignment explanation
Indices: 94044505--94044559 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
94044495 ATTTTATGAT
94044505 TATTTTGAGTTCTATGATATGTTTGCA
1 TATTTTGAGTTCTATGATATGTTTGCA
94044532 TATTTTGAGTTCTATGATATGTTTGCA
1 TATTTTGAGTTCTATGATATGTTTGCA
94044559 T
1 T
94044560 GATTGTGTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.22, C:0.07, G:0.18, T:0.53
Consensus pattern (27 bp):
TATTTTGAGTTCTATGATATGTTTGCA
Found at i:94046123 original size:64 final size:64
Alignment explanation
Indices: 94046046--94046228 Score: 183
Period size: 66 Copynumber: 2.8 Consensus size: 64
94046036 AGACATTATG
* * *
94046046 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTATGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * ** * *
94046110 ATGTAGCTAGGTCGCATGCGTGGTTCCGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATA
1 ATGTAGCTAGGTCGCATGGGT-GATACTATG-TGTACACCATGTAGACAAGAGAGCTACGAGATA
94046175 A
64 A
* * * *
94046176 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAG-ACAAGAGAGC
94046229 CGAACTATAT
Statistics
Matches: 95, Mismatches: 20, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 24 0.25
65 20 0.21
66 31 0.33
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:94050503 original size:64 final size:64
Alignment explanation
Indices: 94050423--94050606 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
94050413 AGACATTATG
* * * *
94050423 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTATGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
** * * * *
94050487 ATGTAGCTAGGTCGCATGCATGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
94050552 AA
63 AA
* * *
94050554 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
94050607 CGAACTATAT
Statistics
Matches: 96, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 24 0.25
66 20 0.21
67 32 0.33
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:94053117 original size:92 final size:93
Alignment explanation
Indices: 94052960--94053130 Score: 281
Period size: 92 Copynumber: 1.8 Consensus size: 93
94052950 GCCCATAAGT
*** *
94052960 GAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATGAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
94053025 CGAGTT-GGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
94053052 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
94053117 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
94053131 CAAATATCCC
Statistics
Matches: 72, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
92 65 0.90
93 7 0.10
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:94053126 original size:46 final size:46
Alignment explanation
Indices: 94052952--94053126 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
94052942 TGTAACCCGC
* *** *
94052952 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * *
94052998 CCATGAGTGAACTCGGACTCAACTCAACGAGTT-GGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* *
94053047 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
94053090 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
94053127 TGCCCAAATA
Statistics
Matches: 107, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 4 0.04
46 85 0.79
47 5 0.05
48 1 0.01
49 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:94055530 original size:15 final size:15
Alignment explanation
Indices: 94055504--94055559 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
94055494 CAAGGAAACC
94055504 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
94055519 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
94055534 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
94055549 GAATAAAGAAA
1 GAATAAAGAAA
94055560 CCCAAGATAC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
14 1 0.03
15 35 0.95
16 1 0.03
ACGTcount: A:0.61, C:0.11, G:0.16, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:94061236 original size:40 final size:40
Alignment explanation
Indices: 94061153--94061373 Score: 245
Period size: 40 Copynumber: 5.6 Consensus size: 40
94061143 TTGAATGCTG
* * * * * *
94061153 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
94061193 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
94061233 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
94061273 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT--TAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
*
94061311 TCCGGGTTAAGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
94061350 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
94061374 TGAACGAGGA
Statistics
Matches: 160, Mismatches: 16, Indels: 11
0.86 0.09 0.06
Matches are distributed among these distances:
37 8 0.05
38 28 0.17
39 26 0.16
40 90 0.56
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:94061397 original size:78 final size:78
Alignment explanation
Indices: 94061228--94061408 Score: 222
Period size: 78 Copynumber: 2.3 Consensus size: 78
94061218 GTGCGAGATA
* * *
94061228 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** *
94061293 CATTCGTGCGAGT
66 CATTCGAACGAGG
* * *
94061306 TTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
94061370 CATTTGAACGAGGAG
66 CATTCGAACGA-G-G
* *
94061385 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
94061409 TACGTGATTT
Statistics
Matches: 88, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
77 38 0.43
78 44 0.50
79 6 0.07
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.25
Consensus pattern (78 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGG
Found at i:94066446 original size:47 final size:47
Alignment explanation
Indices: 94066379--94066722 Score: 526
Period size: 47 Copynumber: 7.3 Consensus size: 47
94066369 CCCTTCGGGA
* * *
94066379 CTTATCACATTTATACACTTTCACATCCATCACATTGGTCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
94066426 CTTATCACATATATATACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
94066473 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
94066520 CTTATCACACATATATACACTTTCACATTCATCACGTTGGCCACTCAGC
1 CTTAT--CACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
** *
94066569 CTTATCACATATATGTACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
94066616 CTTATCACATATATACACTTTTACATTCATCACATTGGCCATTCGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
94066663 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
94066710 CTTATCACATATA
1 CTTATCACATATA
94066723 CATATCTTGT
Statistics
Matches: 268, Mismatches: 27, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
47 225 0.84
49 43 0.16
ACGTcount: A:0.27, C:0.28, G:0.08, T:0.36
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:94072195 original size:7 final size:7
Alignment explanation
Indices: 94072183--94072244 Score: 65
Period size: 7 Copynumber: 9.0 Consensus size: 7
94072173 TCATAATTTC
94072183 TAAACCT
1 TAAACCT
94072190 TAAACCT
1 TAAACCT
*
94072197 TAAACCC
1 TAAACCT
94072204 TAAACCT
1 TAAACCT
94072211 TAAACC-
1 TAAACCT
* *
94072217 TAATCAT
1 TAAACCT
94072224 TAAACCT
1 TAAACCT
*
94072231 CAAA-CT
1 TAAACCT
94072237 CTAAACCT
1 -TAAACCT
94072245 AATCTTTGAA
Statistics
Matches: 44, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
6 6 0.14
7 36 0.82
8 2 0.05
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.26
Consensus pattern (7 bp):
TAAACCT
Found at i:94072229 original size:27 final size:26
Alignment explanation
Indices: 94072196--94072271 Score: 75
Period size: 27 Copynumber: 2.8 Consensus size: 26
94072186 ACCTTAAACC
94072196 TTAAACCCTAAACCTTAAACCTAATCA
1 TTAAA-CCTAAACCTTAAACCTAATCA
*
94072223 TTAAACCTCAAA-CTCTAAACCTAATCT
1 TTAAACCT-AAACCT-TAAACCTAATCA
*
94072250 TTGAATCCTAAATCC-TAAACCT
1 TT-AAACCTAAA-CCTTAAACCT
94072272 TAAACTTGGC
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
26 5 0.12
27 31 0.74
28 5 0.12
29 1 0.02
ACGTcount: A:0.41, C:0.29, G:0.01, T:0.29
Consensus pattern (26 bp):
TTAAACCTAAACCTTAAACCTAATCA
Found at i:94085374 original size:14 final size:14
Alignment explanation
Indices: 94085355--94085385 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
94085345 CTGTGTGTCT
94085355 CACACGGCCAAAGA
1 CACACGGCCAAAGA
94085369 CACACGGCCAAAGA
1 CACACGGCCAAAGA
94085383 CAC
1 CAC
94085386 GTTTGTGTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.42, C:0.39, G:0.19, T:0.00
Consensus pattern (14 bp):
CACACGGCCAAAGA
Found at i:94086149 original size:242 final size:242
Alignment explanation
Indices: 94085718--94086207 Score: 872
Period size: 242 Copynumber: 2.0 Consensus size: 242
94085708 ATAGGCTATT
* *
94085718 TACCATGCCATCTTTCTCACCCAAATTGCAATCACCTACACCCAACCAAAAGGCATATAATATGG
1 TACCAAGCCATCTTTCTCACCCAAATTGCAATCACCTACACCCAACCAAAAGGCATAGAATATGG
*
94085783 CATAAGTAGGCATTTCAACCAATCTCAACCAAGCCTAATTCATACTAAATCCATACTATCATCTA
66 CATAAGTAGGCATTCCAACCAATCTCAACCAAGCCTAATTCATACTAAATCCATACTATCATCTA
**
94085848 TATGACATACAAGTATTGCAAATAGTCATTCAATTTCATACCAAATTCACATTCTCAAATCACCT
131 TATGACATACAAGTATCACAAATAGTCATTCAATTTCATACCAAATTCACATTCTCAAATCACCT
94085913 AAATGGTCAATTTCATTTATGCATCACATTGCCTAAAATCACAAGCA
196 AAATGGTCAATTTCATTTATGCATCACATTGCCTAAAATCACAAGCA
* *
94085960 TACCAAGCCATCTTTCTCACCCAAATTGCAATCACCTACACCTAACCAAAAGGCATAGAATGTGG
1 TACCAAGCCATCTTTCTCACCCAAATTGCAATCACCTACACCCAACCAAAAGGCATAGAATATGG
* * *
94086025 CATAAGTAGGCATTCCAACCAATCTCAACCATGCCTAATTCATGCTAAATCCATACTATCATTTA
66 CATAAGTAGGCATTCCAACCAATCTCAACCAAGCCTAATTCATACTAAATCCATACTATCATCTA
*
94086090 TATGACATACAAGTATCACAAATAGTCATTCAATTTCATACCAAATTCATATTCTCAAATCACCT
131 TATGACATACAAGTATCACAAATAGTCATTCAATTTCATACCAAATTCACATTCTCAAATCACCT
*
94086155 AAATGGTCACTTTCATTTATGCATCACATTGCCTAAAATCACAAGCA
196 AAATGGTCAATTTCATTTATGCATCACATTGCCTAAAATCACAAGCA
94086202 TACCAA
1 TACCAA
94086208 TTCTCAATTT
Statistics
Matches: 236, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
242 236 1.00
ACGTcount: A:0.37, C:0.27, G:0.08, T:0.28
Consensus pattern (242 bp):
TACCAAGCCATCTTTCTCACCCAAATTGCAATCACCTACACCCAACCAAAAGGCATAGAATATGG
CATAAGTAGGCATTCCAACCAATCTCAACCAAGCCTAATTCATACTAAATCCATACTATCATCTA
TATGACATACAAGTATCACAAATAGTCATTCAATTTCATACCAAATTCACATTCTCAAATCACCT
AAATGGTCAATTTCATTTATGCATCACATTGCCTAAAATCACAAGCA
Found at i:94088135 original size:49 final size:49
Alignment explanation
Indices: 94088069--94088306 Score: 278
Period size: 49 Copynumber: 4.8 Consensus size: 49
94088059 TAGCCAAAGC
* * * * *
94088069 TATCTGGTACACATAGTAGCCTGCACATAGTACTACACATGCGACCAAT
1 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
94088118 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
1 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
94088167 TATCCGGTACACGTAGTAGCCTGTACTTAGTACTACACACGTGACCTAAC
1 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * * * * * *
94088217 CATCTGATATAGGTAGCAACCTGCACTTAGTACTACACACGTGATCACAGT
1 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
* * * *
94088268 TTTCAGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACA
94088307 TGCGACTTCA
Statistics
Matches: 159, Mismatches: 27, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
49 89 0.56
50 38 0.24
51 31 0.19
52 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:94088301 original size:101 final size:98
Alignment explanation
Indices: 94088069--94088312 Score: 290
Period size: 101 Copynumber: 2.5 Consensus size: 98
94088059 TAGCCAAAGC
* * * ** *
94088069 TATCTGGTACACATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACGTAG
1 TATCAGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAG
* *
94088134 TAGCCTGCACTTAGTACTACACACGTGACCAAT
66 CAACCTGCACTTAGTACTACACACGTGACCAAT
* * * * * * *
94088167 TATCCGGTACACGTAGTAGCCTGTACTTAGTACTACACACGTGACCTAACCATCTGATATAGGTA
1 TATCAGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC-AACCATCCGATACACGTA
*
94088232 GCAACCTGCACTTAGTACTACACACGTGATCACAGT
65 GCAACCTGCACTTAGTACTACACACGTGA-C-CAAT
* * *
94088268 TTTCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGAC
1 TATCAGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGAC
94088313 TTCACAATAG
Statistics
Matches: 121, Mismatches: 22, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
98 40 0.33
99 39 0.32
100 1 0.01
101 41 0.34
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (98 bp):
TATCAGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAG
CAACCTGCACTTAGTACTACACACGTGACCAAT
Found at i:94096290 original size:40 final size:40
Alignment explanation
Indices: 94096242--94096489 Score: 374
Period size: 40 Copynumber: 6.2 Consensus size: 40
94096232 GGGATTTAAT
* *
94096242 CGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGCC
1 CGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCC
* *
94096282 CGGATATAGTAACTCGCACCAATGCCTTCGAGACTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
* *
94096322 CGGATATAGTAACTCTCACAAATGCCTTCAGGACTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
94096362 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
94096402 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
* * *
94096442 CGGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCC
1 CGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
*
94096482 CGGTTATA
1 CGGATATA
94096490 ATCCAAATAT
Statistics
Matches: 191, Mismatches: 14, Indels: 6
0.91 0.07 0.03
Matches are distributed among these distances:
39 2 0.01
40 188 0.98
41 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
Found at i:94100198 original size:21 final size:21
Alignment explanation
Indices: 94100172--94100225 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
94100162 CAACGGTGGT
* *
94100172 GGTGAGATTAGTTACTGTAGC
1 GGTGAGATTAGATACTGTAAC
*
94100193 GGTGAGATTGGATACTGTAAC
1 GGTGAGATTAGATACTGTAAC
94100214 GGTGAGATTAGA
1 GGTGAGATTAGA
94100226 AATAATGGTG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.28, C:0.07, G:0.35, T:0.30
Consensus pattern (21 bp):
GGTGAGATTAGATACTGTAAC
Found at i:94106365 original size:175 final size:175
Alignment explanation
Indices: 94106093--94106440 Score: 522
Period size: 175 Copynumber: 2.0 Consensus size: 175
94106083 ACACGGCCAA
* * * * *
94106093 GGCACACGCCCGTGTGCTAGGCCTTGCACTTCACACGGTTGAGACACATGGTCGTGTCTCTACCC
1 GGCACACGCCCGTGTACTAGGCCGTGCACTTCACACGGCTGAGACACACGGCCGTGTCTCTACCC
94106158 GTGTGTTTACTACCATGCATACTAACTTACAATTCTTACGTGCTA-GGGACACAC-GACCATATC
66 GTGTGTTTACTACCATGCATACTAACTTACAATTCTTACGTGC-AGGGGACACACAG-CCATATC
* *
94106221 ACACGCCGATGTGGTAAACCGTGTGTCACACACGGCCTAGGCACACT
129 ACACGCCCATGTGGTAAACCGTGTGTCACACACGGCCTAGACACACT
* * *
94106268 GGCACACGCCCGTGTACTAGGCCGTG-ACCTTCATAGGGCTGAGACACACGGCCGTGTCTCTTCC
1 GGCACACGCCCGTGTACTAGGCCGTGCA-CTTCACACGGCTGAGACACACGGCCGTGTCTCTACC
* * *
94106332 TGTGTGTTTACTACCATGCATATTGACTTACAATTCTTACGTGCAGGGGACACACAGCCATATCA
65 CGTGTGTTTACTACCATGCATACTAACTTACAATTCTTACGTGCAGGGGACACACAGCCATATCA
*
94106397 CACGCCCATGTGGTAAACTGTGTGTCACACACGGCCTAGACACA
130 CACGCCCATGTGGTAAACCGTGTGTCACACACGGCCTAGACACA
94106441 TGCCCCTGTG
Statistics
Matches: 156, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
174 2 0.01
175 153 0.98
176 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.23, T:0.24
Consensus pattern (175 bp):
GGCACACGCCCGTGTACTAGGCCGTGCACTTCACACGGCTGAGACACACGGCCGTGTCTCTACCC
GTGTGTTTACTACCATGCATACTAACTTACAATTCTTACGTGCAGGGGACACACAGCCATATCAC
ACGCCCATGTGGTAAACCGTGTGTCACACACGGCCTAGACACACT
Found at i:94119163 original size:41 final size:42
Alignment explanation
Indices: 94119046--94119163 Score: 121
Period size: 43 Copynumber: 2.8 Consensus size: 42
94119036 ACCGTTATAA
* * * * * *
94119046 AACATGATCTTTAGTGGCACTTTTTCTACAAATGCCGCTATAG
1 AACATGATCTTTAGCGACGCTTTTT-TACAAACGCCACTAAAG
* * *
94119089 AACGTGATCTTTAGCGATGCTTTTATTACAAACGCCACTAAAT
1 AACATGATCTTTAGCGACGCTTTT-TTACAAACGCCACTAAAG
*
94119132 AACATGATTTTTAGCGACG-TTTTTTACAAACG
1 AACATGATCTTTAGCGACGCTTTTTTACAAACG
94119164 TCGCAAGAGA
Statistics
Matches: 62, Mismatches: 12, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
41 9 0.15
42 4 0.06
43 48 0.77
44 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (42 bp):
AACATGATCTTTAGCGACGCTTTTTTACAAACGCCACTAAAG
Found at i:94122265 original size:16 final size:16
Alignment explanation
Indices: 94122244--94122275 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
94122234 TGTGTAACGC
*
94122244 CCCAAAAATCTCGAAA
1 CCCAAAAATCCCGAAA
94122260 CCCAAAAATCCCGAAA
1 CCCAAAAATCCCGAAA
94122276 TCCCGAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.34, G:0.06, T:0.09
Consensus pattern (16 bp):
CCCAAAAATCCCGAAA
Found at i:94123798 original size:29 final size:29
Alignment explanation
Indices: 94123748--94123862 Score: 135
Period size: 29 Copynumber: 4.0 Consensus size: 29
94123738 GTGAGCATGA
* *
94123748 ATATGAATGTGAC-TGGGCCTAACGGGCC
1 ATATAAATGTGACTTGGGCCTAATGGGCC
* *
94123776 ATATAAATGTTATTTGGGCCTAATGGGCC
1 ATATAAATGTGACTTGGGCCTAATGGGCC
*
94123805 ATATACATGTGACTTGGGCCTAATGGGCC
1 ATATAAATGTGACTTGGGCCTAATGGGCC
* * * *
94123834 ATATGAATATGA-ATGGGCTTAATGGGCC
1 ATATAAATGTGACTTGGGCCTAATGGGCC
94123862 A
1 A
94123863 AATACAGGTA
Statistics
Matches: 74, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 25 0.34
29 49 0.66
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (29 bp):
ATATAAATGTGACTTGGGCCTAATGGGCC
Found at i:94123857 original size:57 final size:57
Alignment explanation
Indices: 94123754--94123868 Score: 151
Period size: 57 Copynumber: 2.0 Consensus size: 57
94123744 ATGAATATGA
* * * *
94123754 ATGTGACTGGGCCTAACGGGCCATATAAATGTTATTTGGGCCTAATGGGCCATATAC
1 ATGTGACTGGGCCTAACGGGCCATATAAATATGATATGGGCCTAATGGGCCAAATAC
* * *
94123811 ATGTGACTTGGGCCTAATGGGCCATATGAATATGA-ATGGGCTTAATGGGCCAAATAC
1 ATGTGAC-TGGGCCTAACGGGCCATATAAATATGATATGGGCCTAATGGGCCAAATAC
94123868 A
1 A
94123869 GGTATGTGAA
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
57 27 0.54
58 23 0.46
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (57 bp):
ATGTGACTGGGCCTAACGGGCCATATAAATATGATATGGGCCTAATGGGCCAAATAC
Found at i:94127967 original size:24 final size:24
Alignment explanation
Indices: 94127917--94127967 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
94127907 ATGAATTGGC
* * * *
94127917 AAAAGCCGAAATACCGAAATGATG
1 AAAAGCCAAAATACCAAAAAGACG
*
94127941 AAAAGCCAAAATGCCAAAAAGACG
1 AAAAGCCAAAATACCAAAAAGACG
94127965 AAA
1 AAA
94127968 GTTTGGCTAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.57, C:0.18, G:0.18, T:0.08
Consensus pattern (24 bp):
AAAAGCCAAAATACCAAAAAGACG
Found at i:94128118 original size:17 final size:18
Alignment explanation
Indices: 94128086--94128120 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
94128076 ACGAGCCAGA
94128086 ATGGGCTAAATGGGCCCG
1 ATGGGCTAAATGGGCCCG
*
94128104 ATGGGCT-ATTGGGCCCG
1 ATGGGCTAAATGGGCCCG
94128121 TAATAGGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.17, C:0.23, G:0.40, T:0.20
Consensus pattern (18 bp):
ATGGGCTAAATGGGCCCG
Found at i:94128233 original size:29 final size:28
Alignment explanation
Indices: 94128178--94128292 Score: 113
Period size: 29 Copynumber: 4.0 Consensus size: 28
94128168 GTGAGGATGA
* * * *
94128178 ATATGAATGTGACTAGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
94128206 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
94128235 ATATATAGGTGACTTGGGCCTAATGGGTC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * * *
94128264 ATATGAATATGAATGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
94128292 A
1 A
94128293 GATACAAGTA
Statistics
Matches: 71, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
28 25 0.35
29 46 0.65
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.28
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:94132165 original size:7 final size:7
Alignment explanation
Indices: 94132155--94132179 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
94132145 ATAATATATA
94132155 TATCAAG
1 TATCAAG
94132162 TATCAAG
1 TATCAAG
94132169 TATCAAG
1 TATCAAG
94132176 TATC
1 TATC
94132180 TAATTATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.32
Consensus pattern (7 bp):
TATCAAG
Found at i:94132508 original size:35 final size:34
Alignment explanation
Indices: 94132462--94132559 Score: 139
Period size: 31 Copynumber: 2.9 Consensus size: 34
94132452 TTTTTATATT
*
94132462 CTTTAAATGTTTATGTAAGTTATGATAATCATAAA
1 CTTTAAATGTTTAT-TAAGTTATGATTATCATAAA
94132497 CTTTAAATG--T-TTAAGTTATGATTATCATAAA
1 CTTTAAATGTTTATTAAGTTATGATTATCATAAA
*
94132528 CTTTGAATGTTTATATAAGTTATGATTATCAT
1 CTTTAAATGTTTAT-TAAGTTATGATTATCAT
94132560 CTTTAAATAT
Statistics
Matches: 57, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
31 27 0.47
32 1 0.02
33 2 0.04
34 1 0.02
35 26 0.46
ACGTcount: A:0.37, C:0.06, G:0.11, T:0.46
Consensus pattern (34 bp):
CTTTAAATGTTTATTAAGTTATGATTATCATAAA
Done.