Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 282 of 349
Found at i:94143322 original size:53 final size:53
Alignment explanation
Indices: 94143196--94143345 Score: 167
Period size: 53 Copynumber: 2.8 Consensus size: 53
94143186 GTATTACGGA
* * * *
94143196 CATTTTACCCTACAGGGGTATTACAGA-CATTTTACCCTACCGAGGTATTTAGGT
1 CATTTTACCCTATAGGGGTATTTC-GATCATTTTACCCTA-TGAGCTATTTAGGT
* * * *
94143250 CATTTTAACCTATAAGGGTATTTCGATCATTTTACCCTATGTGCTATTTCGGT
1 CATTTTACCCTATAGGGGTATTTCGATCATTTTACCCTATGAGCTATTTAGGT
* * * *
94143303 TATTTTACCCTATGGGGGTATTTTGGTCATTTTACCCTATGAG
1 CATTTTACCCTATAGGGGTATTTCGATCATTTTACCCTATGAG
94143346 GGAATTTCGA
Statistics
Matches: 80, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
53 48 0.60
54 32 0.40
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40
Consensus pattern (53 bp):
CATTTTACCCTATAGGGGTATTTCGATCATTTTACCCTATGAGCTATTTAGGT
Found at i:94143342 original size:27 final size:27
Alignment explanation
Indices: 94143168--94143360 Score: 156
Period size: 27 Copynumber: 7.2 Consensus size: 27
94143158 GGCAAATCAA
* * * *
94143168 TCATTTTACCTTACAGTGGTATTACGG
1 TCATTTTACCCTATAGGGGTATTTCGG
* * * *
94143195 ACATTTTACCCTACAGGGGTATTACAG
1 TCATTTTACCCTATAGGGGTATTTCGG
* ** * *
94143222 ACATTTTACCCTACCGAGGTATTTAGG
1 TCATTTTACCCTATAGGGGTATTTCGG
* * *
94143249 TCATTTTAACCTATAAGGGTATTTCGA
1 TCATTTTACCCTATAGGGGTATTTCGG
* *
94143276 TCATTTTACCCTAT-GTGCTATTTCGG
1 TCATTTTACCCTATAGGGGTATTTCGG
* * *
94143302 TTATTTTACCCTATGGGGGTATTTTGG
1 TCATTTTACCCTATAGGGGTATTTCGG
* *
94143329 TCATTTTACCCTAT-GAGGGAATTTCGA
1 TCATTTTACCCTATAG-GGGTATTTCGG
94143356 TCATT
1 TCATT
94143361 ACATCAGCAC
Statistics
Matches: 134, Mismatches: 30, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
26 22 0.16
27 112 0.84
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40
Consensus pattern (27 bp):
TCATTTTACCCTATAGGGGTATTTCGG
Found at i:94143413 original size:12 final size:12
Alignment explanation
Indices: 94143396--94143423 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
94143386 AGCCTAAGCT
94143396 CATGAGGTCGCC
1 CATGAGGTCGCC
94143408 CATGAGGTCGCC
1 CATGAGGTCGCC
94143420 CATG
1 CATG
94143424 GTGGCCTCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.18
Consensus pattern (12 bp):
CATGAGGTCGCC
Found at i:94150914 original size:18 final size:18
Alignment explanation
Indices: 94150891--94150928 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
94150881 TTTTTTTTCT
*
94150891 CTTTGCTAAGTTCT-TCAA
1 CTTTGC-AAGCTCTGTCAA
94150909 CTTTGCAAGCTCTGTCAA
1 CTTTGCAAGCTCTGTCAA
94150927 CT
1 CT
94150929 AGAACAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.21, C:0.26, G:0.13, T:0.39
Consensus pattern (18 bp):
CTTTGCAAGCTCTGTCAA
Found at i:94159207 original size:14 final size:14
Alignment explanation
Indices: 94159188--94159215 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
94159178 CCTATACACC
94159188 AACATTCATCAATA
1 AACATTCATCAATA
94159202 AACATTCATCAATA
1 AACATTCATCAATA
94159216 TGTTAGTCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.21, G:0.00, T:0.29
Consensus pattern (14 bp):
AACATTCATCAATA
Found at i:94167504 original size:27 final size:28
Alignment explanation
Indices: 94167474--94167571 Score: 119
Period size: 27 Copynumber: 3.5 Consensus size: 28
94167464 ATATTAAGTC
*
94167474 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
94167501 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
94167529 CGCGCACTTAGTGCTGA-ACAATTTAAACC
1 CGCACACTTAGTGCT-ATATAA-TCAAACT
94167558 CGCACACTTAGTGC
1 CGCACACTTAGTGC
94167572 CAATCTCATG
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
27 22 0.35
28 21 0.34
29 19 0.31
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:94172513 original size:40 final size:40
Alignment explanation
Indices: 94172413--94172518 Score: 95
Period size: 40 Copynumber: 2.6 Consensus size: 40
94172403 GGGCTTCGGG
* * *
94172413 CCTAGTAGGCTATAATGCCGGTGAATGAGTTCAGACTTAAAG
1 CCTAGCAGGCTA-AATGCCGGTG-ATGAATTCAGACTTAAAA
* *** * **
94172455 TCTAGCAGGCTTCGTGCCGGTGATGAATTCGGGTTTAAAA
1 CCTAGCAGGCTAAATGCCGGTGATGAATTCAGACTTAAAA
*
94172495 CCTAGCAGGCTAAATGCCGATGAT
1 CCTAGCAGGCTAAATGCCGGTGAT
94172519 TTGATAAAAG
Statistics
Matches: 49, Mismatches: 15, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
40 32 0.65
41 8 0.16
42 9 0.18
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.26
Consensus pattern (40 bp):
CCTAGCAGGCTAAATGCCGGTGATGAATTCAGACTTAAAA
Found at i:94178775 original size:49 final size:49
Alignment explanation
Indices: 94178472--94178783 Score: 154
Period size: 46 Copynumber: 6.6 Consensus size: 49
94178462 TGTGTGAGCT
* * * ** * *
94178472 AGTGTATGA-CATGTCTGGGACAT-GCATCGGCCAC-ATTATGAGATCC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGAAGATGATAGCC
* ** * * * *
94178518 AGGGTAAGACCATGTCTGGGACATGGCATCAGCATTG-AGACGAGT-GCT
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGAAGATGA-TAGCC
* ** * *
94178566 AGTGTAAGA-CATGTTTGGGACAT-GCATCAGCCTCG-GGACG-TAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGAAGATGAT-AGCC
*** * *
94178612 AAAATAAGA-CATGTCTGGGACAT-GCTTTGG-CTACG-AGATG-T-GTC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCCT-CGAAGATGATAGCC
* * * * *
94178656 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGT-TATG-TGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGC-C--TCGAAGATGATAGCC
* * *
94178706 AGTATAAGACCATGTTTGGGACATCGCATTGGCCTCGAAGATGATAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGAAGATGATAGCC
*
94178755 AGTGTAAGATCATGTCTGGGACATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
94178784 CGACACTTTA
Statistics
Matches: 198, Mismatches: 50, Indels: 33
0.70 0.18 0.12
Matches are distributed among these distances:
44 9 0.05
45 16 0.08
46 57 0.29
47 28 0.14
48 24 0.12
49 33 0.17
50 31 0.16
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGAAGATGATAGCC
Found at i:94185924 original size:27 final size:27
Alignment explanation
Indices: 94185893--94186070 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
94185883 TAAATTGTAC
94185893 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
94185920 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
94185946 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
94185974 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
94186002 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
94186029 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
94186056 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
94186071 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:94186007 original size:82 final size:81
Alignment explanation
Indices: 94185894--94186049 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
94185884 AAATTGTACA
* *
94185894 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
94185958 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
94185975 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
94186040 TGCGAGTTGA
65 TGCGAATTGA
94186050 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:94186061 original size:82 final size:81
Alignment explanation
Indices: 94185890--94186070 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
94185880 GATTAAATTG
* *
94185890 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
94185955 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
94185971 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
94186035 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
94186053 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
94186071 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:94189840 original size:45 final size:45
Alignment explanation
Indices: 94189682--94189900 Score: 183
Period size: 46 Copynumber: 4.6 Consensus size: 45
94189672 GTATAATGCC
** *
94189682 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCGAAGTCGAGACT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGACTA-C-ATCTCGAGGCT
* * * * * *
94189731 GACGTCATGTCCCAGACATGTTCTTACACTAGCTCTCACATATTTG-TGCC
1 GATG-CATGTCCCAGACATG-TCTTACACT-G-ACT-ACAT-CTCGAGGCT
*
94189781 GATGCCATGTCCCAGACATGGTCTTACACTGAC-ACATCTCGTA-GTT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGACTACATCTCG-AGGCT
* *
94189827 GATGCATGTCCCAGAAATGTCTTACACTGGCTTACATCTCGAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTGAC-TACATCTCGAGGCT
94189873 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
94189901 AGCTCTCGTC
Statistics
Matches: 139, Mismatches: 20, Indels: 25
0.76 0.11 0.14
Matches are distributed among these distances:
44 12 0.09
45 16 0.12
46 46 0.33
48 2 0.01
49 27 0.19
50 29 0.21
51 6 0.04
52 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGACTACATCTCGAGGCT
Found at i:94189935 original size:47 final size:44
Alignment explanation
Indices: 94189736--94189997 Score: 151
Period size: 46 Copynumber: 5.6 Consensus size: 44
94189726 AGACTGACGT
* * *
94189736 CATGTCCCAGACATGTTCTTACACTAGCTCTCACATATTTGTGCCGATGC
1 CATGTCCCAGACATG-TCTTACACTAGCTCT--CGTA-ATGTG-CAAT-C
* * *
94189786 CATGTCCCAGACATGGTCTTACACTGACACATCTCGTAGT-TG--ATG
1 CATGTCCCAGACAT-GTCTTACACT-A-GC-TCTCGTAATGTGCAATC
* * * * *
94189831 CATGTCCCAGAAATGTCTTACACTGGCTTACATC-TCGA-G-GCTGATG
1 CATGTCCCAGACATGTCTTACACTAGC-T-C-TCGT-AATGTGC-AATC
94189877 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGT-CAATTC
1 CATGTCCCAGACATGTCTTACACTAGCTCTCG--T-AATGTGCAA-TC
* * *
94189924 CATGTCCCAGACATGGTCTTACACTGGCTCTCGTAATGTGGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTAATGT-G-CAATC
94189971 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
94189998 ACACACACAT
Statistics
Matches: 172, Mismatches: 19, Indels: 46
0.73 0.08 0.19
Matches are distributed among these distances:
42 2 0.01
43 5 0.03
44 13 0.08
45 19 0.11
46 47 0.27
47 32 0.19
48 19 0.11
49 2 0.01
50 24 0.14
51 5 0.03
52 1 0.01
53 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCGTAATGTGCAATC
Found at i:94189977 original size:140 final size:143
Alignment explanation
Indices: 94189678--94189994 Score: 359
Period size: 140 Copynumber: 2.2 Consensus size: 143
94189668 TAGGGTATAA
*
94189678 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCGAAGTCGAGACTGACGTCATGTCC
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTGACTATCGAACTCGAGACTGACGTCATGTCC
* *
94189743 CAGACATGTTCTTACACTAGCTCTCACATATTTGTGCCGATGCCATGTCCCAGACATGGTCTTAC
64 CAGACATGTTCTTACACTAGCTCTCACATATATGT-CCAATGCCATGTCCCAGACATGGTCTTAC
94189808 ACTGACACATCTCGTAG
128 ACTGA-ACATCTCGTAG
* * * * * *
94189825 T--TGATGCATGTCCCAGAAATGTCTTACACTGGCT-TAC-ATCTCGAGGCTGATG-CATGTCCC
1 TGCCGATGCATGTCCCAGACATGTCTTACACTGACTAT-CGAACTCGAGACTGACGTCATGTCCC
* *
94189885 AGACATG-TCTTACACTAGCTCTCGTC-TCA-ATGT-CAATTCCATGTCCCAGACATGGTCTTAC
65 AGACATGTTCTTACACTAGCTCTC-ACAT-ATATGTCCAATGCCATGTCCCAGACATGGTCTTAC
*
94189946 ACTG-GC-TCTCGTAATG
128 ACTGAACATCTCGT-A-G
94189962 TGGCCGATGCATGTCCCAGACATGTCTTACACT
1 T-GCCGATGCATGTCCCAGACATGTCTTACACT
94189995 AGCACACACA
Statistics
Matches: 148, Mismatches: 14, Indels: 23
0.80 0.08 0.12
Matches are distributed among these distances:
135 6 0.04
136 2 0.01
137 2 0.01
138 30 0.20
140 47 0.32
141 17 0.11
142 12 0.08
143 14 0.09
144 13 0.09
145 4 0.03
147 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29
Consensus pattern (143 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTGACTATCGAACTCGAGACTGACGTCATGTCCCA
GACATGTTCTTACACTAGCTCTCACATATATGTCCAATGCCATGTCCCAGACATGGTCTTACACT
GAACATCTCGTAG
Found at i:94198266 original size:37 final size:37
Alignment explanation
Indices: 94198207--94198313 Score: 187
Period size: 37 Copynumber: 2.9 Consensus size: 37
94198197 AGCTCAGACG
* *
94198207 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
94198244 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
94198281 TAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCG
94198314 AAATATATTT
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:94198592 original size:48 final size:48
Alignment explanation
Indices: 94198440--94198593 Score: 247
Period size: 48 Copynumber: 3.2 Consensus size: 48
94198430 GGTCGTTCGG
* *
94198440 CCACAATATACGTATCTCATACATATTTCACATT-GACCATTCAGCTTTA
1 CCAC-ATATACATATCTCATACATATTTCACATTAG-CCATTCGGCTTTA
**
94198489 CCACATACGCATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
94198537 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
94198585 CCACATATA
1 CCACATATA
94198594 TGCATGTTCA
Statistics
Matches: 98, Mismatches: 6, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
48 93 0.95
49 5 0.05
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
Found at i:94198642 original size:47 final size:47
Alignment explanation
Indices: 94198564--94198662 Score: 135
Period size: 47 Copynumber: 2.1 Consensus size: 47
94198554 ATACATATTT
* * * *
94198564 CACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCAC
1 CACATTAGCCATTCGGCCTTACCACACATATGCATGCTCACATTCAC
* * *
94198611 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCAT
1 CACATTAGCCATTCGGCCTTACCACACATATGCATGCTCACATTCAC
94198658 CACAT
1 CACAT
94198663 AAAATCCTAA
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.31
Consensus pattern (47 bp):
CACATTAGCCATTCGGCCTTACCACACATATGCATGCTCACATTCAC
Found at i:94202619 original size:40 final size:40
Alignment explanation
Indices: 94202587--94203182 Score: 962
Period size: 40 Copynumber: 14.8 Consensus size: 40
94202577 CCAGCATGAT
* * * * * *
94202587 TGCTCTTCGGGACCTAGCCCGGATATAACACCAACACAAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
94202627 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
94202667 TGCTCTTTGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
94202707 TGCTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
94202746 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
94202786 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
94202826 TGCTCTTCGGGACTTAGTCTGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
94202866 TGCTTCTGCTCTTTGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGC-TCT--TC---GGGACTTAGCCCGGATACATCACTAGCACGAA
94202912 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
94202952 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
94202992 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
94203032 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
94203072 TGCTCTTC-GGACTTAGCCCAGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
94203111 TGCTCTTCGGGACTTAGCTCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
94203151 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
94203183 CTCAATTCTC
Statistics
Matches: 525, Mismatches: 23, Indels: 16
0.93 0.04 0.03
Matches are distributed among these distances:
39 75 0.14
40 406 0.77
41 3 0.01
43 4 0.01
45 3 0.01
46 34 0.06
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:94203168 original size:23 final size:23
Alignment explanation
Indices: 94203102--94203168 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 23
94203092 GATACATCAC
94203102 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
* * * *
94203125 TAGCTCGGAT--ACATC---AC-
1 TAGCACGAATGCTCTTCGGGACT
94203142 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
94203165 TAGC
1 TAGC
94203169 CCGGATATAT
Statistics
Matches: 30, Mismatches: 8, Indels: 12
0.60 0.16 0.24
Matches are distributed among these distances:
17 8 0.27
18 2 0.07
19 3 0.10
21 3 0.10
22 2 0.07
23 12 0.40
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (23 bp):
TAGCACGAATGCTCTTCGGGACT
Found at i:94204500 original size:37 final size:37
Alignment explanation
Indices: 94204441--94204549 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
94204431 AGCTCAGACG
* *
94204441 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
94204478 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
94204515 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
94204550 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:94204785 original size:48 final size:48
Alignment explanation
Indices: 94204686--94204814 Score: 216
Period size: 48 Copynumber: 2.8 Consensus size: 48
94204676 ACAATATACG
94204686 TACATATTTCACA-TA-CCATTCGGCTTTACCAC--ATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
94204730 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
94204778 TACATATTTCACATTAGCCATTCGGC-TTA-CACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
94204815 TGCATGTTCA
Statistics
Matches: 81, Mismatches: 0, Indels: 6
0.93 0.00 0.07
Matches are distributed among these distances:
44 13 0.16
45 2 0.02
46 25 0.31
47 3 0.04
48 38 0.47
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:94204881 original size:47 final size:45
Alignment explanation
Indices: 94204738--94204883 Score: 143
Period size: 47 Copynumber: 3.1 Consensus size: 45
94204728 CATACATATT
* * *
94204738 TCACATTAGCCATTCGGCTTTAC-CACATATACATATCTCATACATAT-T
1 TCACATTAGCCATTCGGC-TTACACACATATGCACAT-TC--ACAT-TCA
* ** *
94204786 TCACATTAGCCATTCGGCTTACACATATATGCATGTTCATATTCA
1 TCACATTAGCCATTCGGCTTACACACATATGCACATTCACATTCA
*
94204831 TCACATTGGCCATTCGGCCTTATCACACATATGCACATTCACATTCA
1 TCACATTAGCCATTCGG-CTTA-CACACATATGCACATTCACATTCA
94204878 TCACAT
1 TCACAT
94204884 AAATCCTAAA
Statistics
Matches: 84, Mismatches: 10, Indels: 9
0.82 0.10 0.09
Matches are distributed among these distances:
44 1 0.01
45 19 0.23
46 4 0.05
47 32 0.38
48 28 0.33
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (45 bp):
TCACATTAGCCATTCGGCTTACACACATATGCACATTCACATTCA
Found at i:94208360 original size:8 final size:8
Alignment explanation
Indices: 94208327--94208381 Score: 58
Period size: 8 Copynumber: 6.9 Consensus size: 8
94208317 ATAAGATATT
94208327 TAATATATA
1 TAATATA-A
*
94208336 TAATATAT
1 TAATATAA
*
94208344 TATTATAA
1 TAATATAA
*
94208352 TAATTTAA
1 TAATATAA
94208360 TAATATAA
1 TAATATAA
*
94208368 TAAGAT-A
1 TAATATAA
94208375 TAATATA
1 TAATATA
94208382 TTAAGTAAAA
Statistics
Matches: 37, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
7 6 0.16
8 24 0.65
9 7 0.19
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.44
Consensus pattern (8 bp):
TAATATAA
Found at i:94218782 original size:21 final size:20
Alignment explanation
Indices: 94218750--94218788 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
94218740 GCCATTCAGC
*
94218750 CGTGTACAATAATACACGGG
1 CGTGTACAATAACACACGGG
*
94218770 CGTGCTACCATAACACACG
1 CGTG-TACAATAACACACG
94218789 AGTGTGGGAG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.33, C:0.28, G:0.21, T:0.18
Consensus pattern (20 bp):
CGTGTACAATAACACACGGG
Found at i:94220740 original size:13 final size:13
Alignment explanation
Indices: 94220713--94220764 Score: 72
Period size: 13 Copynumber: 4.1 Consensus size: 13
94220703 TGAATCCTCC
94220713 TATTTTT-TTTATT
1 TATTTTTATTT-TT
*
94220726 TAGTTTTATTTTT
1 TATTTTTATTTTT
94220739 TATTTTTA-TTTT
1 TATTTTTATTTTT
94220751 TATTTTTATTTTT
1 TATTTTTATTTTT
94220764 T
1 T
94220765 TCATTTCAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
12 12 0.34
13 20 0.57
14 3 0.09
ACGTcount: A:0.15, C:0.00, G:0.02, T:0.83
Consensus pattern (13 bp):
TATTTTTATTTTT
Found at i:94220764 original size:7 final size:6
Alignment explanation
Indices: 94220713--94220763 Score: 66
Period size: 6 Copynumber: 8.2 Consensus size: 6
94220703 TGAATCCTCC
* *
94220713 TATTTT TTTTATT TAGTTT TATTTTT TATTTT TATTTT TATTTT TATTTT
1 TATTTT TATT-TT TATTTT TA-TTTT TATTTT TATTTT TATTTT TATTTT
94220763 T
1 T
94220764 TTCATTTCAA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
6 30 0.77
7 9 0.23
ACGTcount: A:0.16, C:0.00, G:0.02, T:0.82
Consensus pattern (6 bp):
TATTTT
Found at i:94220764 original size:19 final size:19
Alignment explanation
Indices: 94220713--94220763 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
94220703 TGAATCCTCC
94220713 TATTTTTT-TTATTTAGTTT
1 TATTTTTTATT-TTTAGTTT
*
94220732 TATTTTTTATTTTTATTTT
1 TATTTTTTATTTTTAGTTT
94220751 TA-TTTTTATTTTT
1 TATTTTTTATTTTT
94220764 TTCATTTCAA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 11 0.37
19 17 0.57
20 2 0.07
ACGTcount: A:0.16, C:0.00, G:0.02, T:0.82
Consensus pattern (19 bp):
TATTTTTTATTTTTAGTTT
Found at i:94220770 original size:9 final size:8
Alignment explanation
Indices: 94220716--94220789 Score: 51
Period size: 8 Copynumber: 8.5 Consensus size: 8
94220706 ATCCTCCTAT
94220716 TTTTTTTA
1 TTTTTTTA
94220724 TTTAGTTTTA
1 TTT--TTTTA
94220734 -TTTTTTA
1 TTTTTTTA
*
94220741 TTTTTATTT
1 TTTTT-TTA
94220750 TTATTTTTA
1 TT-TTTTTA
94220759 TTTTTTTCA
1 TTTTTTT-A
*
94220768 TTTCAATTTA
1 TTT--TTTTA
*
94220778 TTATTTTA
1 TTTTTTTA
94220786 TTTT
1 TTTT
94220790 GAAAGACAGA
Statistics
Matches: 52, Mismatches: 6, Indels: 16
0.70 0.08 0.22
Matches are distributed among these distances:
7 5 0.10
8 19 0.37
9 14 0.27
10 11 0.21
11 3 0.06
ACGTcount: A:0.18, C:0.03, G:0.01, T:0.78
Consensus pattern (8 bp):
TTTTTTTA
Found at i:94225058 original size:16 final size:17
Alignment explanation
Indices: 94225039--94225075 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
94225029 GTATTTACTT
94225039 ATATTTTAA-ATATAAG
1 ATATTTTAATATATAAG
*
94225055 ATA-TTTAATATATAAT
1 ATATTTTAATATATAAG
94225071 ATATT
1 ATATT
94225076 ATTATAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 5 0.28
16 12 0.67
17 1 0.06
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (17 bp):
ATATTTTAATATATAAG
Found at i:94225091 original size:8 final size:8
Alignment explanation
Indices: 94225060--94225124 Score: 55
Period size: 8 Copynumber: 8.4 Consensus size: 8
94225050 ATAAGATATT
94225060 TAATAT-A
1 TAATATAA
*
94225067 TAATATAT
1 TAATATAA
*
94225075 TATTATAA
1 TAATATAA
*
94225083 TAATTTAA
1 TAATATAA
94225091 TAATATAA
1 TAATATAA
*
94225099 TAACTAAAA
1 TAA-TATAA
94225108 TAA-ATAA
1 TAATATAA
*
94225115 -AATAAAA
1 TAATATAA
94225122 TAA
1 TAA
94225125 AGAACAACAT
Statistics
Matches: 45, Mismatches: 9, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
6 2 0.04
7 12 0.27
8 24 0.53
9 7 0.16
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.37
Consensus pattern (8 bp):
TAATATAA
Found at i:94225120 original size:14 final size:16
Alignment explanation
Indices: 94225089--94225125 Score: 51
Period size: 14 Copynumber: 2.4 Consensus size: 16
94225079 ATAATAATTT
94225089 AATAATATAATAACTAA
1 AATAA-ATAATAACTAA
94225106 AATAAATAA-AA-TAA
1 AATAAATAATAACTAA
94225120 AATAAA
1 AATAAA
94225126 GAACAACATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 9 0.45
15 2 0.10
16 4 0.20
17 5 0.25
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (16 bp):
AATAAATAATAACTAA
Found at i:94227022 original size:24 final size:22
Alignment explanation
Indices: 94226976--94227030 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
94226966 GGGGTGATGG
* *
94226976 CACGGGCGTGTCATATCAGACA
1 CACGGGCGTGTCACATAAGACA
*
94226998 CACGGGCGTGTCACATAAGCCA
1 CACGGGCGTGTCACATAAGACA
*
94227020 CACGGACGTGT
1 CACGGGCGTGT
94227031 GGTACCTTCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.25, C:0.29, G:0.29, T:0.16
Consensus pattern (22 bp):
CACGGGCGTGTCACATAAGACA
Found at i:94227188 original size:15 final size:15
Alignment explanation
Indices: 94227168--94227198 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
94227158 CATGTAAATG
94227168 TGTTGCATTTATTCC
1 TGTTGCATTTATTCC
94227183 TGTTGCATTTATTCC
1 TGTTGCATTTATTCC
94227198 T
1 T
94227199 AGTTAGGGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.19, G:0.13, T:0.55
Consensus pattern (15 bp):
TGTTGCATTTATTCC
Found at i:94227504 original size:26 final size:26
Alignment explanation
Indices: 94227469--94227543 Score: 80
Period size: 26 Copynumber: 2.9 Consensus size: 26
94227459 GAAGACTTTC
*
94227469 CAGATGATATGCCACAAAGGTTTTTT
1 CAGATAATATGCCACAAAGGTTTTTT
* ***
94227495 CAGATAATATGGCACAAAACCTTTTT
1 CAGATAATATGCCACAAAGGTTTTTT
* *
94227521 -AGAGAATTTGCCACAAAGGTTTT
1 CAGATAATATGCCACAAAGGTTTT
94227544 CCAAAGAGCT
Statistics
Matches: 38, Mismatches: 11, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
25 17 0.45
26 21 0.55
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (26 bp):
CAGATAATATGCCACAAAGGTTTTTT
Found at i:94227556 original size:25 final size:25
Alignment explanation
Indices: 94227528--94227717 Score: 133
Period size: 25 Copynumber: 7.6 Consensus size: 25
94227518 TTTAGAGAAT
* *
94227528 TTGCCACAAAGGTTTTCCAAAGAGC
1 TTGCCACAAAGGCTTTCCAAAGAGA
* * *
94227553 TTGCCACAAAGGCTTTCTAGAGAGT
1 TTGCCACAAAGGCTTTCCAAAGAGA
* *
94227578 TTTCTACAAAGGCTTTCCAAAGA-A
1 TTGCCACAAAGGCTTTCCAAAGAGA
*
94227602 TTCACCACAAAGGCTTTCCAAAGA-A
1 TT-GCCACAAAGGCTTTCCAAAGAGA
* *
94227627 TT-CACTACAAAGGCTTTCCAGATAG-
1 TTGC-C-ACAAAGGCTTTCCAAAGAGA
* *
94227652 TT--CACTAAAAGGCTTTCTAGAGA-A
1 TTGCCAC--AAAGGCTTTCCAAAGAGA
* * * *
94227676 TTCGCAATAAAGGCTTTCCAGAGAAA
1 TT-GCCACAAAGGCTTTCCAAAGAGA
94227702 TTGCCACAAAGGCTTT
1 TTGCCACAAAGGCTTT
94227718 TCAGGTAATC
Statistics
Matches: 134, Mismatches: 20, Indels: 22
0.76 0.11 0.12
Matches are distributed among these distances:
22 2 0.01
23 2 0.01
24 19 0.14
25 107 0.80
26 3 0.02
27 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.26
Consensus pattern (25 bp):
TTGCCACAAAGGCTTTCCAAAGAGA
Found at i:94227587 original size:50 final size:50
Alignment explanation
Indices: 94227515--94227717 Score: 189
Period size: 50 Copynumber: 4.1 Consensus size: 50
94227505 GGCACAAAAC
* * * * *
94227515 CTTTTTAGAGAATTTGCCACAAAGGTTTTCCAAAGAGCTTGCCACAAAGG
1 CTTTCTAGAGAATTCGCTACAAAGGCTTTCCAAAGAGATTGCCACAAAGG
* ** *
94227565 CTTTCTAGAGAGTTTTCTACAAAGGCTTTCCAAAGA-ATTCACCACAAAGG
1 CTTTCTAGAGAATTCGCTACAAAGGCTTTCCAAAGAGATT-GCCACAAAGG
* * * * *
94227615 CTTTCCAAAGAATTCACTACAAAGGCTTTCCAGATAG-TT--CACTAAAAGG
1 CTTTCTAGAGAATTCGCTACAAAGGCTTTCCAAAGAGATTGCCAC--AAAGG
* * * *
94227664 CTTTCTAGAGAATTCGCAATAAAGGCTTTCCAGAGAAATTGCCACAAAGG
1 CTTTCTAGAGAATTCGCTACAAAGGCTTTCCAAAGAGATTGCCACAAAGG
94227714 CTTT
1 CTTT
94227718 TCAGGTAATC
Statistics
Matches: 125, Mismatches: 21, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
47 3 0.02
49 37 0.30
50 82 0.66
52 3 0.02
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (50 bp):
CTTTCTAGAGAATTCGCTACAAAGGCTTTCCAAAGAGATTGCCACAAAGG
Found at i:94240059 original size:42 final size:42
Alignment explanation
Indices: 94239981--94240060 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
94239971 GTGCAGGTTT
*
94239981 CACACAGCCAAGACACACGCCCGTGTTCTAGGCCGTGTACAA
1 CACACAGCCAAGACACACGCCCGTGTTCTAGCCCGTGTACAA
** *
94240023 CACACAGCTGAGACACACGCCTGTGTCTCT-GCCCGTGT
1 CACACAGCCAAGACACACGCCCGTGT-TCTAGCCCGTGT
94240061 GCTCAATTCT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 30 0.91
43 3 0.09
ACGTcount: A:0.24, C:0.36, G:0.23, T:0.17
Consensus pattern (42 bp):
CACACAGCCAAGACACACGCCCGTGTTCTAGCCCGTGTACAA
Found at i:94243703 original size:27 final size:28
Alignment explanation
Indices: 94243673--94243737 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 28
94243663 GTGGCGCAAA
* * *
94243673 ATGAAAGGAAT-GCCTTTGTGGTGAATC
1 ATGAAAGGAATAGACTCTATGGTGAATC
*
94243700 ATGAAAAG-ATAGACTCTATGGTGAATC
1 ATGAAAGGAATAGACTCTATGGTGAATC
94243727 ATG-AAGGAATA
1 ATGAAAGGAATA
94243738 ATCTCTTGGG
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
26 5 0.16
27 26 0.84
ACGTcount: A:0.38, C:0.09, G:0.26, T:0.26
Consensus pattern (28 bp):
ATGAAAGGAATAGACTCTATGGTGAATC
Found at i:94254189 original size:73 final size:73
Alignment explanation
Indices: 94254100--94254278 Score: 286
Period size: 73 Copynumber: 2.5 Consensus size: 73
94254090 GAGTCACATG
*
94254100 GCCAAGTCACACGCCCGTGTGCTAGGCCGTGTGAGCATACTGACTTGCAATATTAAGGTGCAAGG
1 GCCAAGTCACACGCCCGTGTGCTAGGCCGTGTGAGCATACTAACTTGCAATATTAAGGTGCAAGG
94254165 GTTATACT
66 GTTATACT
* * *
94254173 GCCAAGTCACACGCCCGTGTCCTAGGCCGTGTAAGCATACTAACTTGCAATATTAAGTTGCAAGG
1 GCCAAGTCACACGCCCGTGTGCTAGGCCGTGTGAGCATACTAACTTGCAATATTAAGGTGCAAGG
*
94254238 GTTATATT
66 GTTATACT
** *
94254246 GCCAAGTCACATACCTGTGTGCTAGGCCGTGTG
1 GCCAAGTCACACGCCCGTGTGCTAGGCCGTGTG
94254279 TCACACACGG
Statistics
Matches: 96, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
73 96 1.00
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.26
Consensus pattern (73 bp):
GCCAAGTCACACGCCCGTGTGCTAGGCCGTGTGAGCATACTAACTTGCAATATTAAGGTGCAAGG
GTTATACT
Found at i:94255092 original size:14 final size:15
Alignment explanation
Indices: 94255073--94255103 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
94255063 AATTAATCAG
94255073 TTCATAACA-ATTCA
1 TTCATAACATATTCA
94255087 TTCATAACATATTCA
1 TTCATAACATATTCA
94255102 TT
1 TT
94255104 TCTTATCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.56
15 7 0.44
ACGTcount: A:0.39, C:0.19, G:0.00, T:0.42
Consensus pattern (15 bp):
TTCATAACATATTCA
Found at i:94255392 original size:41 final size:39
Alignment explanation
Indices: 94255270--94255404 Score: 125
Period size: 41 Copynumber: 3.4 Consensus size: 39
94255260 CCAGTTTGGT
*
94255270 ACCCAGTACCTCATCGAA-TAATTCGAAGTAATAAGTTGAC
1 ACCCAGTGCCTCATCGAATTAA-TCGAAGTAATAA-TTGAC
* * * * * *
94255310 ACCCAGTGTCTCATC-AGCTAAATCAAAGT-A-AATGGGC
1 ACCCAGTGCCTCATCGA-ATTAATCGAAGTAATAATTGAC
94255347 ACCCAGTGCCTCATCGAATTAATCCGAAGTAATAGATTGAC
1 ACCCAGTGCCTCATCGAATTAAT-CGAAGTAATA-ATTGAC
*
94255388 ACCCAGTGTCTCATCGA
1 ACCCAGTGCCTCATCGA
94255405 CTCGAGGTCA
Statistics
Matches: 74, Mismatches: 14, Indels: 13
0.73 0.14 0.13
Matches are distributed among these distances:
37 21 0.28
38 8 0.11
39 3 0.04
40 20 0.27
41 22 0.30
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (39 bp):
ACCCAGTGCCTCATCGAATTAATCGAAGTAATAATTGAC
Found at i:94256319 original size:5 final size:5
Alignment explanation
Indices: 94256309--94256342 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
94256299 ATTTAGTTAT
94256309 TATAA TATAA TATAA TATAA TATAA TATAA TATA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATA
94256343 TACTTAACAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:94256942 original size:10 final size:8
Alignment explanation
Indices: 94256884--94256951 Score: 59
Period size: 8 Copynumber: 8.4 Consensus size: 8
94256874 TATAATGTAC
94256884 ATATATT-
1 ATATATTA
94256891 ATATACTTA
1 ATATA-TTA
*
94256900 GTAT-TTA
1 ATATATTA
* *
94256907 AGAAATTA
1 ATATATTA
94256915 ATATATTA
1 ATATATTA
94256923 ATATATTA
1 ATATATTA
94256931 ATATAATATA
1 ATAT-AT-TA
*
94256941 ATATAATA
1 ATATATTA
94256949 ATA
1 ATA
94256952 AAGCATACAA
Statistics
Matches: 49, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
7 9 0.18
8 28 0.57
9 6 0.12
10 6 0.12
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.44
Consensus pattern (8 bp):
ATATATTA
Found at i:94272785 original size:26 final size:26
Alignment explanation
Indices: 94272749--94272802 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
94272739 ACAATGACTT
94272749 AGCCAAATACATGCCAAAATAATATC
1 AGCCAAATACATGCCAAAATAATATC
94272775 AGCCAAATACATGCCAAAATAATATC
1 AGCCAAATACATGCCAAAATAATATC
94272801 AG
1 AG
94272803 ACAATATGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.50, C:0.22, G:0.09, T:0.19
Consensus pattern (26 bp):
AGCCAAATACATGCCAAAATAATATC
Found at i:94276413 original size:48 final size:48
Alignment explanation
Indices: 94276294--94277061 Score: 622
Period size: 48 Copynumber: 15.9 Consensus size: 48
94276284 GGTAAGATGC
* * * * * ** *
94276294 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATTGGTGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGC-C-CACATATCGAAGT
* *
94276344 CGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATGTCGAAGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCGAAGT
* * * * * *
94276392 CAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAT-AAATGT
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCGAA-GT
* * * * * **
94276440 CG-TGCCATGTTCCAGACATGGTATTACACTGGCTCTCATATATTGGTGT
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGC-C-CACATATCGAAGT
* * *
94276489 TGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATGTCGAAGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCGAAGT
* * * * * *
94276537 CAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAT-AAATGT
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCGAA-GT
* * * * **
94276585 CG-TGCCATGTTCCAGACATGGTATTACACTGGCTCTCATATATCGGTGT
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGC-C-CACATATCGAAGT
* * * *
94276634 TGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATGTTGAAGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCGAAGT
* * * * * * *
94276682 CAATGCCATGTCCCAGACATGGTCTTACACTAACTCTCATAT-AAATGT
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCGAA-GT
* * **
94276730 CG-TGCCATGTTCCAAACATGGTATTACACTAGCTCTCATATATCGGTGT
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGC-C-CACATATCGAAGT
* * * *
94276779 TGATGCCATGTTCCAAACATGGTCTTACAGTAGCCCACATGTCG-AGG
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCGAAGT
* * * * *
94276826 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAT-AAATGT
1 C-GATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCGAA-GT
* *
94276875 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCC-CATATTTC-AGTGT
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGC-CCACATA--TCGA-AGT
* * * * * *
94276925 CGATGCCATGTTCCGAATATAGTCTTACACTAGCCCACATGTCGAGGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCGAAGT
* * * *
94276973 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAT-AAATGT
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCGAA-GT
*
94277021 CGATGCCATGTTCCAAACATGGTCTTACACTAGCCCTCATA
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATA
94277062 ACCCTAGTAT
Statistics
Matches: 566, Mismatches: 126, Indels: 54
0.76 0.17 0.07
Matches are distributed among these distances:
47 91 0.16
48 288 0.51
49 34 0.06
50 153 0.27
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCGAAGT
Found at i:94276560 original size:145 final size:145
Alignment explanation
Indices: 94276297--94277061 Score: 1235
Period size: 145 Copynumber: 5.3 Consensus size: 145
94276287 AAGATGCCGA
* * * **
94276297 TGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATTGGTGCCGATGCCATGTTCCAAAC
1 TGCCATGTTCCAAACATGGTATTACACTGGCTCTCATATATTGGTGTTGATGCCATGTTCCAAAC
94276362 ATGGTCTTACACTAGCCCACATGTCGAAGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCT
66 ATGGTCTTACACTAGCCCACATGTCGAAGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCT
94276427 CTCATATAAATGTCG
131 CTCATATAAATGTCG
*
94276442 TGCCATGTTCCAGACATGGTATTACACTGGCTCTCATATATTGGTGTTGATGCCATGTTCCAAAC
1 TGCCATGTTCCAAACATGGTATTACACTGGCTCTCATATATTGGTGTTGATGCCATGTTCCAAAC
94276507 ATGGTCTTACACTAGCCCACATGTCGAAGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCT
66 ATGGTCTTACACTAGCCCACATGTCGAAGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCT
94276572 CTCATATAAATGTCG
131 CTCATATAAATGTCG
* *
94276587 TGCCATGTTCCAGACATGGTATTACACTGGCTCTCATATATCGGTGTTGATGCCATGTTCCAAAC
1 TGCCATGTTCCAAACATGGTATTACACTGGCTCTCATATATTGGTGTTGATGCCATGTTCCAAAC
* *
94276652 ATGGTCTTACACTAGCCCACATGTTGAAGCCAATGCCATGTCCCAGACATGGTCTTACACTAACT
66 ATGGTCTTACACTAGCCCACATGTCGAAGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCT
94276717 CTCATATAAATGTCG
131 CTCATATAAATGTCG
* *
94276732 TGCCATGTTCCAAACATGGTATTACACTAGCTCTCATATATCGGTGTTGATGCCATGTTCCAAAC
1 TGCCATGTTCCAAACATGGTATTACACTGGCTCTCATATATTGGTGTTGATGCCATGTTCCAAAC
* * **
94276797 ATGGTCTTACAGTAGCCCACATGTCGAGGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCT
66 ATGGTCTTACACTAGCCCACATGTCGAAGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCT
94276862 CTCATATAAATGTCG
131 CTCATATAAATGTCG
* * * * *
94276877 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCCCATAT-TTCAGTGTCGATGCCATGTTCCGA
1 -TGCCATGTTCCAAACATGGTATTACACTGGCTCTCATATATT-GGTGTTGATGCCATGTTCCAA
* * * * *
94276941 ATATAGTCTTACACTAGCCCACATGTCGAGGCCGATGCCATGTCCCAAACATGGTCTTACACTAG
64 ACATGGTCTTACACTAGCCCACATGTCGAAGCCAATGCCATGTCCCAGACATGGTCTTACACTAG
94277006 CTCTCATATAAATGTCG
129 CTCTCATATAAATGTCG
* * *
94277023 ATGCCATGTTCCAAACATGGTCTTACACTAGCCCTCATA
1 -TGCCATGTTCCAAACATGGTATTACACTGGCTCTCATA
94277062 ACCCTAGTAT
Statistics
Matches: 588, Mismatches: 30, Indels: 3
0.95 0.05 0.00
Matches are distributed among these distances:
145 421 0.72
146 167 0.28
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (145 bp):
TGCCATGTTCCAAACATGGTATTACACTGGCTCTCATATATTGGTGTTGATGCCATGTTCCAAAC
ATGGTCTTACACTAGCCCACATGTCGAAGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCT
CTCATATAAATGTCG
Found at i:94277705 original size:12 final size:12
Alignment explanation
Indices: 94277688--94277712 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
94277678 AAAGCCCTAA
94277688 ACTCGCAACCAT
1 ACTCGCAACCAT
94277700 ACTCGCAACCAT
1 ACTCGCAACCAT
94277712 A
1 A
94277713 TTGCAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.40, G:0.08, T:0.16
Consensus pattern (12 bp):
ACTCGCAACCAT
Found at i:94285630 original size:50 final size:50
Alignment explanation
Indices: 94285555--94285949 Score: 398
Period size: 50 Copynumber: 7.9 Consensus size: 50
94285545 TCCGTTGTGA
*
94285555 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTGATAG
* * * * *
94285605 GTCACATATGTAGTATTAAGTGCAGGCTACTATGCGTACCCG-TTAACTTCG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTGA--TAG
* * * * ** * * *
94285656 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTGATAG
* *** *
94285706 GTCACATGTATAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTGATAG
* * * * *
94285756 GTCGCATGTGTAGTTCTAAGTGCAGGCTACTATGCGTACCCG-TTAACTTTG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTGA--TAG
* * * * * * * *
94285807 ATCACGTGTGTAGTACTAAGTGCAAGCTACTATGTGTATCAGATGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTGATAG
* *
94285857 GTCACGTGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTGATAG
***
94285907 GTTGTATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
94285950 GAGCTTCTAT
Statistics
Matches: 275, Mismatches: 64, Indels: 12
0.78 0.18 0.03
Matches are distributed among these distances:
49 6 0.02
50 197 0.72
51 70 0.25
52 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (50 bp):
GTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATTGATAG
Found at i:94285638 original size:24 final size:24
Alignment explanation
Indices: 94285563--94285638 Score: 66
Period size: 24 Copynumber: 3.1 Consensus size: 24
94285553 GAGTCACATG
94285563 TGTAGTACTAAGTGCAGGCTACTA
1 TGTAGTACTAAGTGCAGGCTACTA
* * *
94285587 TGT-GTACCAGATTGATAGG-TCACATA
1 TGTAGTACTA-AGTG-CAGGCT-AC-TA
*
94285613 TGTAGTATTAAGTGCAGGCTACTA
1 TGTAGTACTAAGTGCAGGCTACTA
94285637 TG
1 TG
94285639 CGTACCCGTT
Statistics
Matches: 39, Mismatches: 7, Indels: 12
0.67 0.12 0.21
Matches are distributed among these distances:
23 5 0.13
24 11 0.28
25 10 0.26
26 9 0.23
27 4 0.10
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (24 bp):
TGTAGTACTAAGTGCAGGCTACTA
Found at i:94285736 original size:101 final size:101
Alignment explanation
Indices: 94285556--94285946 Score: 279
Period size: 101 Copynumber: 3.9 Consensus size: 101
94285546 CCGTTGTGAG
* * * * *
94285556 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCACATATGTAGTAT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTCACATATATAGTAC
94285621 TAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGA
66 TAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGA
* ** * *
94285657 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTTAAGTCACATGTATAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTCACATATATAGTAC
*** * * **
94285722 TAAGTGCAGGCTACTACATGTACCAGATTGA-TAAG-
66 TAAGTGCAGGCTACTATGCGTACCCG-TTAACTTCGA
* * * * * ** ** * * *
94285757 TCGCATGTGTAGTTCTAAGTGCAGGCTACTATGCGTACCCG-TTAACTTTGATCACGTGTGTAGT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGA-TAAG-TCACATATATAGT
* * * * * ** *
94285821 ACTAAGTGCAAGCTACTATGTGTATCAGAT-GGTT-AA
64 ACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGA
* * * * * * *** * *
94285857 GTCACGTGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATTGATAGGTTGTATGTGTAGTA
1 -TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTCACATATATAGTA
94285922 CTAAGTGCAGGCTACTATGCGTACC
65 CTAAGTGCAGGCTACTATGCGTACC
94285947 AGAGAGCTTC
Statistics
Matches: 228, Mismatches: 55, Indels: 15
0.77 0.18 0.05
Matches are distributed among these distances:
99 1 0.00
100 69 0.30
101 152 0.67
102 6 0.03
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (101 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGATAAGTCACATATATAGTAC
TAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGA
Found at i:94285828 original size:151 final size:151
Alignment explanation
Indices: 94285554--94285946 Score: 626
Period size: 151 Copynumber: 2.6 Consensus size: 151
94285544 ATCCGTTGTG
* *
94285554 AGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCACATATGTAGT
1 AGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCATGTGTAGT
*
94285619 AT-TAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGC
66 -TCTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAAGC
*
94285683 TACTACGTGTATTAGATGGTTA
130 TACTACGTGTATCAGATGGTTA
* ** *
94285705 AGTCACATGTATAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAAGTCGCATGTGTAGT
1 AGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCATGTGTAGT
*
94285770 TCTAAGTGCAGGCTACTATGCGTACCCGTTAACTTTGATCACGTGTGTAGTACTAAGTGCAAGCT
66 TCTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAAGCT
*
94285835 ACTATGTGTATCAGATGGTTA
131 ACTACGTGTATCAGATGGTTA
* * * * *
94285856 AGTCACGTGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATTGATAGGTTGTATGTGTAGT
1 AGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCATGTGTAGT
*
94285921 ACTAAGTGCAGGCTACTATGCGTACC
66 TCTAAGTGCAGGCTACTATGCGTACC
94285947 AGAGAGCTTC
Statistics
Matches: 221, Mismatches: 20, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
150 1 0.00
151 220 1.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (151 bp):
AGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCATGTGTAGT
TCTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAAGCT
ACTACGTGTATCAGATGGTTA
Found at i:94286170 original size:16 final size:16
Alignment explanation
Indices: 94286149--94286180 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
94286139 AGAATGGAGT
94286149 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
94286165 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
94286181 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:94288371 original size:48 final size:48
Alignment explanation
Indices: 94288261--94288727 Score: 420
Period size: 48 Copynumber: 9.6 Consensus size: 48
94288251 AGGGTAAGAT
* * * * * * *
94288261 GCCGATGCCATATCCCAGACATGGTCTTACATTGGCTCTCATATATC-GG
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGC-C-CACATATCAAG
*
94288310 TGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATGTCAAG
1 -GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCAAG
* * * * *
94288359 GCCGATGCCATG-TCCTAGACATGGTCTTACACTAGCTCTCATATAAAT
1 GCCGATGCCATGTTCC-AAACATGGTCTTACACTAGCCCACATATCAAG
* * *
94288407 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATATC-GG
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGC-C-CACATATCAAG
* * * *
94288456 TGTCGATGCCATGTACCAAACATGGTCTTACACTAGCCCACATGTCGAG
1 -GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCAAG
* * * * *
94288505 TCCGATGCCATG-TCCTAAACATGGTCTTACACTAGCTCTCATATAAAT
1 GCCGATGCCATGTTCC-AAACATGGTCTTACACTAGCCCACATATCAAG
** * * * * *
94288553 GTTGATGCCATGTTCCAAACATAGTCTTACACTGGCTCTCATATATCGAT
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGC-C-CACATATCAAG
* * * *
94288603 ACTGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATGTCGAG
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCAAG
* * * * * * * *
94288651 GCCAATGCCATGTCCCAGACATGGTCTTGCACTAGCTCTCATATAAAT
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCAAG
94288699 GCCGATGCCATGTTCCAAACATGGTCTTA
1 GCCGATGCCATGTTCCAAACATGGTCTTA
94288728 TGCCGATGCC
Statistics
Matches: 336, Mismatches: 70, Indels: 24
0.78 0.16 0.06
Matches are distributed among these distances:
47 5 0.01
48 212 0.63
49 11 0.03
50 108 0.32
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCAAG
Found at i:94288463 original size:98 final size:94
Alignment explanation
Indices: 94288261--94288727 Score: 497
Period size: 98 Copynumber: 4.8 Consensus size: 94
94288251 AGGGTAAGAT
* * * *
94288261 GCCGATGCCATATCCCAGACATGGTCTTACATTGGCTCTCATATATCGGTGCCGATGCCATGTTC
1 GCCGATGCCATGT-CCAGACATGGTCTTACACTAGCTCTCATATA--GATGCCGATGCCATGTTC
*
94288326 CAAACATGGTCTTACACTAGCCCACATGTCAAG
63 CAAACATGGTCTTACACTAGCCCACATATC-AG
*
94288359 GCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCCA
1 GCCGATGCCATGTCC-AGACATGGTCTTACACTAGCTCTCATATAGATGCCGATGCCATGTTCCA
* * *
94288424 AACATGGTCTTACACTGGCTCTCATATATCGG
65 AACATGGTCTTACACTAGC-C-CACATATCAG
* * * * * *
94288456 TGTCGATGCCATGTACCAAACATGGTCTTACACTAGCCCACATGTCGA-GTCCGATGCCATG-TC
1 -GCCGATGCCATGT-CCAGACATGGTCTTACACTAGCTCTCATATAGATG-CCGATGCCATGTTC
* * * *
94288519 CTAAACATGGTCTTACACTAGCTCTCATATAAAT
63 C-AAACATGGTCTTACACTAGCCCACATAT-CAG
** * * * * *
94288553 GTTGATGCCATGTTCCAAACATAGTCTTACACTGGCTCTCATATATCGATACTGATGCCATGTTC
1 GCCGATGCCATG-TCCAGACATGGTCTTACACTAGCTCTCATATA--GATGCCGATGCCATGTTC
*
94288618 CAAACATGGTCTTACACTAGCCCACATGTCGAG
63 CAAACATGGTCTTACACTAGCCCACATATC-AG
* * *
94288651 GCCAATGCCATGTCCCAGACATGGTCTTGCACTAGCTCTCATATAAATGCCGATGCCATGTTCCA
1 GCCGATGCCATGT-CCAGACATGGTCTTACACTAGCTCTCATATAGATGCCGATGCCATGTTCCA
94288716 AACATGGTCTTA
65 AACATGGTCTTA
94288728 TGCCGATGCC
Statistics
Matches: 307, Mismatches: 47, Indels: 32
0.80 0.12 0.08
Matches are distributed among these distances:
96 106 0.35
97 10 0.03
98 186 0.61
99 5 0.02
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (94 bp):
GCCGATGCCATGTCCAGACATGGTCTTACACTAGCTCTCATATAGATGCCGATGCCATGTTCCAA
ACATGGTCTTACACTAGCCCACATATCAG
Found at i:94288527 original size:146 final size:146
Alignment explanation
Indices: 94288259--94288727 Score: 769
Period size: 146 Copynumber: 3.2 Consensus size: 146
94288249 AAAGGGTAAG
* * * * *
94288259 ATGCCGATGCCATATCCCAGACATGGTCTTACATTGGCTCTCATATATCGGTGCCGATGCCATGT
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATATCGGTGACGATGCCATGT
*
94288324 TCCAAACATGGTCTTACACTAGCCCACATGTCAAGGCCGATGCCATGTCCTAGACATGGTCTTAC
66 TCCAAACATGGTCTTACACTAGCCCACATGTCGAGGCCGATGCCATGTCCTAGACATGGTCTTAC
94288389 ACTAGCTCTCATATAA
131 ACTAGCTCTCATATAA
*
94288405 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATATCGGTGTCGATGCCATGT
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATATCGGTGACGATGCCATGT
* * *
94288470 ACCAAACATGGTCTTACACTAGCCCACATGTCGAGTCCGATGCCATGTCCTAAACATGGTCTTAC
66 TCCAAACATGGTCTTACACTAGCCCACATGTCGAGGCCGATGCCATGTCCTAGACATGGTCTTAC
94288535 ACTAGCTCTCATATAA
131 ACTAGCTCTCATATAA
** * *
94288551 ATGTTGATGCCATGTTCCAAACATAGTCTTACACTGGCTCTCATATATCGAT-ACTGATGCCATG
1 ATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATATCGGTGAC-GATGCCATG
* * *
94288615 TTCCAAACATGGTCTTACACTAGCCCACATGTCGAGGCCAATGCCATGTCCCAGACATGGTCTTG
65 TTCCAAACATGGTCTTACACTAGCCCACATGTCGAGGCCGATGCCATGTCCTAGACATGGTCTTA
94288680 CACTAGCTCTCATATAA
130 CACTAGCTCTCATATAA
94288697 ATGCCGATGCCATGTTCCAAACATGGTCTTA
1 ATGCCGATGCCATGTTCCAAACATGGTCTTA
94288728 TGCCGATGCC
Statistics
Matches: 299, Mismatches: 23, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
145 1 0.00
146 298 1.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (146 bp):
ATGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATATCGGTGACGATGCCATGT
TCCAAACATGGTCTTACACTAGCCCACATGTCGAGGCCGATGCCATGTCCTAGACATGGTCTTAC
ACTAGCTCTCATATAA
Found at i:94288733 original size:30 final size:30
Alignment explanation
Indices: 94288697--94288757 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
94288687 TCTCATATAA
94288697 ATGCCGATGCCATGTTCCAAACATGGTCTT
1 ATGCCGATGCCATGTTCCAAACATGGTCTT
94288727 ATGCCGATGCCATGTTCCAAACATGGTCTT
1 ATGCCGATGCCATGTTCCAAACATGGTCTT
94288757 A
1 A
94288758 CACTGGCTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.30
Consensus pattern (30 bp):
ATGCCGATGCCATGTTCCAAACATGGTCTT
Found at i:94293353 original size:51 final size:54
Alignment explanation
Indices: 94293293--94293401 Score: 197
Period size: 51 Copynumber: 2.1 Consensus size: 54
94293283 AAGTTGCTTG
94293293 AAATGTTAGATTAATTTGAACTCATCACCAAGTTCTTTA-GC-A-CCATGTTAA
1 AAATGTTAGATTAATTTGAACTCATCACCAAGTTCTTTAGGCAACCCATGTTAA
94293344 AAATGTTAGATTAATTTGAACTCATCACCAAGTTCTTTAGGCAACCCATGTTAA
1 AAATGTTAGATTAATTTGAACTCATCACCAAGTTCTTTAGGCAACCCATGTTAA
94293398 AAAT
1 AAAT
94293402 TTCGGTATTG
Statistics
Matches: 55, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
51 39 0.71
52 2 0.04
53 1 0.02
54 13 0.24
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (54 bp):
AAATGTTAGATTAATTTGAACTCATCACCAAGTTCTTTAGGCAACCCATGTTAA
Found at i:94294836 original size:48 final size:48
Alignment explanation
Indices: 94294774--94294957 Score: 305
Period size: 48 Copynumber: 3.8 Consensus size: 48
94294764 TATATATGTG
94294774 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
94294822 TGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
94294870 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGACATGTAAA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
94294918 TGTGGTAAAGCCGAATGGCTAGTGTGAAATGTGAATGAGA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
94294958 CAAGTGTGAA
Statistics
Matches: 129, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 129 1.00
ACGTcount: A:0.35, C:0.07, G:0.29, T:0.29
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:94294963 original size:22 final size:22
Alignment explanation
Indices: 94294938--94294981 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
94294928 CCGAATGGCT
*
94294938 AGTGTGAAATGTGAATGAGACA
1 AGTGTGAAATATGAATGAGACA
94294960 AGTGTGAAATATGAATGAGACA
1 AGTGTGAAATATGAATGAGACA
94294982 TGTATATGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.05, G:0.30, T:0.23
Consensus pattern (22 bp):
AGTGTGAAATATGAATGAGACA
Found at i:94294972 original size:70 final size:70
Alignment explanation
Indices: 94294890--94295027 Score: 249
Period size: 70 Copynumber: 2.0 Consensus size: 70
94294880 CCGAATGGCT
* *
94294890 AGTGTGAAATATGTATGAGACATGTAAATGTGGTAAAGCCGAATGGCTAGTGTGAAATGTGAATG
1 AGTGTGAAATATGAATGAGACATGTAAATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATG
94294955 AGACA
66 AGACA
*
94294960 AGTGTGAAATATGAATGAGACATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATG
1 AGTGTGAAATATGAATGAGACATGTAAATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATG
94295025 AGA
66 AGA
94295028 TATGTATATG
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
70 65 1.00
ACGTcount: A:0.38, C:0.07, G:0.30, T:0.26
Consensus pattern (70 bp):
AGTGTGAAATATGAATGAGACATGTAAATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATG
AGACA
Found at i:94294990 original size:118 final size:118
Alignment explanation
Indices: 94294844--94295065 Score: 383
Period size: 118 Copynumber: 1.9 Consensus size: 118
94294834 GAATGGCTAA
* *
94294844 TGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 TGTGAAATATATATGAGACATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAG
94294909 ACATGTAAATGTGGTAAAGCCGAATGGCTAGTGTGAAATGTGAATGAGACAAG
66 ACATGTAAATGTGGTAAAGCCGAATGGCTAGTGTGAAATGTGAATGAGACAAG
94294962 TGTGAAATATGA-ATGAGACATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGA
1 TGTGAAATAT-ATATGAGACATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGA
* * *
94295026 GATATGTATATGTGGTAAAGCCGAATGGTTAGTGTGAAAT
65 GACATGTAAATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
94295066 ATGTACGAGA
Statistics
Matches: 98, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
118 97 0.99
119 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.29, T:0.29
Consensus pattern (118 bp):
TGTGAAATATATATGAGACATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGAATGAG
ACATGTAAATGTGGTAAAGCCGAATGGCTAGTGTGAAATGTGAATGAGACAAG
Found at i:94295070 original size:166 final size:166
Alignment explanation
Indices: 94294796--94295113 Score: 557
Period size: 166 Copynumber: 1.9 Consensus size: 166
94294786 GAATGGCTAA
* *
94294796 TGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 TGTGAAATATGAATGAGACATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
94294861 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGACATGTAAATGTGGTAA
66 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGACATGTAAATGTGGTAA
94294926 AGCCGAATGGCTAGTGTGAAATGTGAATGAGACAAG
131 AGCCGAATGGCTAGTGTGAAATGTGAATGAGACAAG
*
94294962 TGTGAAATATGAATGAGACATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGA-ATGA
1 TGTGAAATATGAATGAGACATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT-ATATGA
* * *
94295026 GATATGTATATGTGGTAAAGCCGAATGGTTAGTGTGAAATATGTACGAGATATGTATATGTGGTA
65 GATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGACATGTAAATGTGGTA
94295091 AAGCCGAATGGCTAGTGTGAAAT
130 AAGCCGAATGGCTAGTGTGAAAT
94295114 ATGTAGGAGA
Statistics
Matches: 144, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
166 143 0.99
167 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.29, T:0.29
Consensus pattern (166 bp):
TGTGAAATATGAATGAGACATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTACGAGACATGTAAATGTGGTAA
AGCCGAATGGCTAGTGTGAAATGTGAATGAGACAAG
Found at i:94295124 original size:48 final size:48
Alignment explanation
Indices: 94294960--94295116 Score: 278
Period size: 48 Copynumber: 3.3 Consensus size: 48
94294950 GAATGAGACA
*
94294960 AGTGTGAAATATGAATGAGACATGTATATGTGGTAAAGCCGAATGGCT
1 AGTGTGAAATATGAATGAGATATGTATATGTGGTAAAGCCGAATGGCT
*
94295008 AGTGTGAAATATGAATGAGATATGTATATGTGGTAAAGCCGAATGGTT
1 AGTGTGAAATATGAATGAGATATGTATATGTGGTAAAGCCGAATGGCT
* *
94295056 AGTGTGAAATATGTACGAGATATGTATATGTGGTAAAGCCGAATGGCT
1 AGTGTGAAATATGAATGAGATATGTATATGTGGTAAAGCCGAATGGCT
94295104 AGTGTGAAATATG
1 AGTGTGAAATATG
94295117 TAGGAGATGT
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 104 1.00
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.29
Consensus pattern (48 bp):
AGTGTGAAATATGAATGAGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:94295316 original size:37 final size:37
Alignment explanation
Indices: 94295265--94295367 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
94295255 GGAAATATAT
94295265 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
94295302 TCCGGGTAACACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
94295339 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
94295368 GGACTATTCG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:94300400 original size:12 final size:14
Alignment explanation
Indices: 94300385--94300416 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
94300375 GTGAGAACAC
94300385 ATGTGTA-G-TACT
1 ATGTGTAGGCTACT
94300397 ATGTGTAGGCTACT
1 ATGTGTAGGCTACT
94300411 ATGTGT
1 ATGTGT
94300417 TTAAGACAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 1 0.06
14 10 0.56
ACGTcount: A:0.22, C:0.09, G:0.28, T:0.41
Consensus pattern (14 bp):
ATGTGTAGGCTACT
Found at i:94300499 original size:50 final size:50
Alignment explanation
Indices: 94300382--94300776 Score: 461
Period size: 50 Copynumber: 7.8 Consensus size: 50
94300372 ATTGTGAGAA
* * * *
94300382 CACATGTGTAGTACTATGTGTAGGCTACTATGTGTTTAAGACA-ATT-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTG--T-A-CCAGATTGTTAGGT
*
94300434 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * * *
94300484 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAGTTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-TTAGGT
* * ** *
94300535 CACGTGTGTAGTACTAAGTGAAGGCTACTACGTGTATTAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * *
94300585 CACGTGTGTAGTACTAAGTGCAGACTACTACGTGTACCAGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * *
94300635 CGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGATAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* *
94300685 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * *
94300735 CGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
94300777 AGGTTCGGTT
Statistics
Matches: 296, Mismatches: 44, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
48 2 0.01
49 4 0.01
50 220 0.74
51 40 0.14
52 30 0.10
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
Found at i:94300809 original size:150 final size:150
Alignment explanation
Indices: 94300429--94300794 Score: 381
Period size: 151 Copynumber: 2.4 Consensus size: 150
94300419 AAGACAATTT
* * * * * * *
94300429 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCACATGTGTA
1 TAGGTCACATGTGTAGTACTAAGTGCAGACTACTACGCGTACCAGATGGATAGGTCACAAGGGTA
** * * * * * * **
94300494 GTACTAAGTGCAGGCTACTATGCGTACCTGATAGTTTCGATCACGTGTGTAGTACTAAGTGAAGG
66 GTACTAAGCACAGGCTACTACGTGTATCAGATGGATAAG-TCACGTGTGTAGTACTAAGTGAAGG
** *
94300559 CTACTACGTGTATTAGATGGT
130 CTACTACGTGTACCAGATGGA
* * * * * *
94300580 TAGGTCACGTGTGTAGTACTAAGTGCAGACTACTACGTGTACCAGATTGATAGGTCGCATGTGTA
1 TAGGTCACATGTGTAGTACTAAGTGCAGACTACTACGCGTACCAGATGGATAGGTCACAAGGGTA
** *
94300645 GTACTAAGTGCAGGCTACTACGTGTATCAGATGGATAAGTCACGTGTGTAGTACTAAGTGCAGGC
66 GTACTAAGCACAGGCTACTACGTGTATCAGATGGATAAGTCACGTGTGTAGTACTAAGTGAAGGC
*
94300710 TACTACGTGTACCAGATTGA
131 TACTACGTGTACCAGATGGA
* * * * * * *
94300730 TAGGTCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATAGGTTCGGTTACAAGGGT
1 TAGGTCACATGTGTAGTACTAAGTGCAGACTACTACGCGTACCAGAT-GGATAGGTCACAAGGGT
94300795 GGTATTTGCA
Statistics
Matches: 185, Mismatches: 29, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
150 82 0.44
151 103 0.56
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (150 bp):
TAGGTCACATGTGTAGTACTAAGTGCAGACTACTACGCGTACCAGATGGATAGGTCACAAGGGTA
GTACTAAGCACAGGCTACTACGTGTATCAGATGGATAAGTCACGTGTGTAGTACTAAGTGAAGGC
TACTACGTGTACCAGATGGA
Found at i:94301640 original size:180 final size:180
Alignment explanation
Indices: 94301332--94301688 Score: 502
Period size: 180 Copynumber: 2.0 Consensus size: 180
94301322 TCTGAGATCT
* * * *
94301332 GTACCATGAGATAAATAATTTTTAGTGAAGAAAGATCAGAACTATCAGATAGTGAAATAGGGGTA
1 GTACAATGAGATAAATAACTTTTAGTAAAGAAAGATCAGAACTATCAGACAGTGAAATAGGGGTA
* * * * *
94301397 TCTTTAATGAATAAATTGTACTAATTTGCTATATAAAAAATTCTAAAAATTTTATGATAAGAATA
66 ACTTTAATGAATAAACTGTACTAATTGGCTAAACAAAAAATTCTAAAAATTTTATGATAAGAATA
* *
94301462 TATGTGAGT-TCAGTTTCTGGGAAAATT-ATCAGTTCTTAATTTGGAGTCCC
131 TATGTGAGTCT-AGTTTCTAGGAAAATTAAT-AGATCTTAATTTGGAGTCCC
* * * * * **
94301512 GTACAATGAGATAAATAACTTTTAGTAAAGAGAGGTCGGAATTGTTGGACAGTGAAATAGGGGTA
1 GTACAATGAGATAAATAACTTTTAGTAAAGAAAGATCAGAACTATCAGACAGTGAAATAGGGGTA
* *
94301577 ACTTTAATGAATAAACTGTACTAATTGGCTAAACCAAAAATTCTAAAAATTTTATGGTAAGAATA
66 ACTTTAATGAATAAACTGTACTAATTGGCTAAACAAAAAATTCTAAAAATTTTATGATAAGAATA
94301642 TATGTGAGTCTAGTTTCTAGGAAAATTAATAGATCTTAATTTGGAGT
131 TATGTGAGTCTAGTTTCTAGGAAAATTAATAGATCTTAATTTGGAGT
94301689 TCCATAGCTC
Statistics
Matches: 155, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
180 152 0.98
181 3 0.02
ACGTcount: A:0.39, C:0.08, G:0.19, T:0.34
Consensus pattern (180 bp):
GTACAATGAGATAAATAACTTTTAGTAAAGAAAGATCAGAACTATCAGACAGTGAAATAGGGGTA
ACTTTAATGAATAAACTGTACTAATTGGCTAAACAAAAAATTCTAAAAATTTTATGATAAGAATA
TATGTGAGTCTAGTTTCTAGGAAAATTAATAGATCTTAATTTGGAGTCCC
Found at i:94310276 original size:27 final size:27
Alignment explanation
Indices: 94310238--94310294 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
94310228 AACACGTCAA
*
94310238 GAAAGGAATGCCTATGTGGCGCAAT-AT
1 GAAAGGAATGCCTATGTAGCG-AATCAT
*
94310265 GAAAGGAATGCCTTTGTAGCGAATCAT
1 GAAAGGAATGCCTATGTAGCGAATCAT
94310292 GAA
1 GAA
94310295 GGGATAGCCT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 3 0.11
27 24 0.89
ACGTcount: A:0.35, C:0.14, G:0.28, T:0.23
Consensus pattern (27 bp):
GAAAGGAATGCCTATGTAGCGAATCAT
Found at i:94316559 original size:43 final size:42
Alignment explanation
Indices: 94316436--94316565 Score: 138
Period size: 43 Copynumber: 3.1 Consensus size: 42
94316426 CTATTCTAGA
* *
94316436 AAGGAAAGAAATCAACTGAAATAAAATTGCAAT-TGAAACCT
1 AAGGAAAGAAATGAACTGAAATAAAATTGCAATCAGAAACCT
* * ** *
94316477 AA-AAAATGAATTGAACTGAAATAAAATCCCAACTGAGAAACCT
1 AAGGAAA-GAAATGAACTGAAATAAAATTGCAA-TCAGAAACCT
* *
94316520 AAGGAAAGAAATGAACTGAAATAAGATTGCAATCAAGAAAACT
1 AAGGAAAGAAATGAACTGAAATAAAATTGCAATC-AGAAACCT
94316563 AAG
1 AAG
94316566 TCTTAAGTAG
Statistics
Matches: 71, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
40 3 0.04
41 23 0.32
42 2 0.03
43 40 0.56
44 3 0.04
ACGTcount: A:0.55, C:0.12, G:0.15, T:0.18
Consensus pattern (42 bp):
AAGGAAAGAAATGAACTGAAATAAAATTGCAATCAGAAACCT
Found at i:94323349 original size:14 final size:14
Alignment explanation
Indices: 94323332--94323362 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
94323322 TGAAAAAAAT
94323332 AAATTAAAAACATA
1 AAATTAAAAACATA
*
94323346 AAATTAAAAATATA
1 AAATTAAAAACATA
94323360 AAA
1 AAA
94323363 GGAATATGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (14 bp):
AAATTAAAAACATA
Found at i:94325381 original size:27 final size:29
Alignment explanation
Indices: 94325318--94325381 Score: 69
Period size: 27 Copynumber: 2.3 Consensus size: 29
94325308 ATGGATCCAC
* *
94325318 ATGTATGAGTCTATCATATATGAGTTTGA
1 ATGTATGAATCTATCATATATGAATTTGA
** *
94325347 ATCCATGAATCT-TC-TATATGAATTTGT
1 ATGTATGAATCTATCATATATGAATTTGA
94325374 ATGTATGA
1 ATGTATGA
94325382 TAGTCCACTA
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
27 17 0.61
28 2 0.07
29 9 0.32
ACGTcount: A:0.31, C:0.09, G:0.17, T:0.42
Consensus pattern (29 bp):
ATGTATGAATCTATCATATATGAATTTGA
Found at i:94328486 original size:28 final size:28
Alignment explanation
Indices: 94328450--94328576 Score: 155
Period size: 28 Copynumber: 4.5 Consensus size: 28
94328440 ATAATAAGTC
94328450 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGTTATATAATCAAACT
* *
94328478 CACACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTG-TTATATAATCAAACT
*
94328507 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGTTATATAATCAAACT
* * ** * *
94328535 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGTTATATAA-TCAAACT
94328564 CGCACACTTAGTG
1 CGCACACTTAGTG
94328577 CCAATCTCAT
Statistics
Matches: 86, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
28 43 0.50
29 43 0.50
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGTTATATAATCAAACT
Found at i:94328506 original size:29 final size:29
Alignment explanation
Indices: 94328450--94328577 Score: 163
Period size: 29 Copynumber: 4.5 Consensus size: 29
94328440 ATAATAAGTC
94328450 CGCACACTTAGTG-TTATATAATCAAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
* *
94328478 CACACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
94328507 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTATATAATCAAACT
* ** * *
94328535 TGCACACTTAGTGC-TATGCAATTTAAACC
1 CGCACACTTAGTGCTTATATAA-TCAAACT
94328564 CGCACACTTAGTGC
1 CGCACACTTAGTGC
94328578 CAATCTCATG
Statistics
Matches: 88, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
28 43 0.49
29 45 0.51
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTTATATAATCAAACT
Found at i:94328541 original size:57 final size:57
Alignment explanation
Indices: 94328449--94328577 Score: 179
Period size: 57 Copynumber: 2.3 Consensus size: 57
94328439 TATAATAAGT
*
94328449 CCGCACACTTAGTGTTATATAATCAAACTCACACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCACACACTTAGTGCTATACA-AATCAAAC
* ** * * *
94328506 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCACACACTTAGTGCTATACAAATCAAAC
94328563 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
94328578 CAATCTCATG
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
57 60 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCACACACTTAGTGCTATACAAATCAAAC
Found at i:94331675 original size:48 final size:48
Alignment explanation
Indices: 94331604--94332043 Score: 741
Period size: 48 Copynumber: 9.3 Consensus size: 48
94331594 TGTACAAGAT
*
94331604 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
94331652 AAATATGTATGAGATAGGGATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
94331700 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* * *
94331748 AAATATATATGAGATAGGTATTTGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
94331796 AAATATGTATGAGATATGTAGATGTGGTAAAGCC-----G--AATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
94331837 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
94331885 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
94331933 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
94331981 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
94332029 AAATATGTAGGAGAT
1 AAATATGTATGAGAT
94332044 GTGTGTATAT
Statistics
Matches: 370, Mismatches: 15, Indels: 14
0.93 0.04 0.04
Matches are distributed among these distances:
41 39 0.11
43 1 0.00
46 1 0.00
48 329 0.89
ACGTcount: A:0.36, C:0.06, G:0.28, T:0.30
Consensus pattern (48 bp):
AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
Found at i:94331863 original size:89 final size:89
Alignment explanation
Indices: 94331742--94332019 Score: 457
Period size: 89 Copynumber: 3.0 Consensus size: 89
94331732 CCGAATGGCT
* * *
94331742 AATGTGAAATATATATGAGATAGGTATTTGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
94331807 AGATATGTAGATGTGGTAAAGCCG
66 AGATATGTATATGTGGTAAAGCCG
94331831 AATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
94331896 AGATATGTATATGTGGTAAAGCCGAATGG
66 AGATATGTATATGTGGTAAAGCC-----G
94331925 CTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
1 --AATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
94331990 TGAGATATGTATATGTGGTAAAGCCG
64 TGAGATATGTATATGTGGTAAAGCCG
94332016 AATG
1 AATG
94332020 GCTAGTGTGA
Statistics
Matches: 178, Mismatches: 4, Indels: 14
0.91 0.02 0.07
Matches are distributed among these distances:
89 88 0.49
91 1 0.01
94 1 0.01
96 88 0.49
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (89 bp):
AATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
AGATATGTATATGTGGTAAAGCCG
Found at i:94331871 original size:185 final size:185
Alignment explanation
Indices: 94331604--94332019 Score: 697
Period size: 185 Copynumber: 2.2 Consensus size: 185
94331594 TGTACAAGAT
*
94331604 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCC-----G--AATGTGAAATATGTATGAGATAG
94331669 GGATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCC
59 GGATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCC
*
94331734 GAATGGCTAATGTGAAATATATATGAGATAGGTATTTGTGGTAAAGCCGAATGGCTAATGTG
124 GAATGGCTAATGTGAAATATATATGAGATAGGTATATGTGGTAAAGCCGAATGGCTAATGTG
* * *
94331796 AAATATGTATGAGATATGTAGATGTGGTAAAGCCGAATGTGAAATATGTATGAGATATGTATATG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGTGAAATATGTATGAGATAGGGATATG
*
94331861 TGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGC
66 TGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGC
* *
94331926 TAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
131 TAATGTGAAATATATATGAGATAGGTATATGTGGTAAAGCCGAATGGCTAATGTG
94331981 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
94332020 GCTAGTGTGA
Statistics
Matches: 215, Mismatches: 9, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
185 182 0.85
187 1 0.00
192 32 0.15
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (185 bp):
AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGTGAAATATGTATGAGATAGGGATATG
TGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGC
TAATGTGAAATATATATGAGATAGGTATATGTGGTAAAGCCGAATGGCTAATGTG
Found at i:94332018 original size:233 final size:233
Alignment explanation
Indices: 94331604--94332043 Score: 799
Period size: 233 Copynumber: 1.9 Consensus size: 233
94331594 TGTACAAGAT
94331604 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAG
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAG
94331669 GGATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCC
66 GGATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCC
*
94331734 GAATGGCTAATGTGAAATATATATGAGATAGGTATTTGTGGTAAAGCCGAATGGCTAATGTGAAA
131 GAATGGCTAATGTGAAATATATATGAGATAGGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
*
94331799 TATGTATGAGATATGTAGATGTGGTAAAGCCGAATGTG
196 TATGTAGGAGATATGTAGATGTGGTAAAGCCGAATGTG
* *
94331837 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAT
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAG
* *
94331902 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCC
66 GGATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCC
* * *
94331967 GAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAA
131 GAATGGCTAATGTGAAATATATATGAGATAGGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
94332032 TATGTAGGAGAT
196 TATGTAGGAGAT
94332044 GTGTGTATAT
Statistics
Matches: 198, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
233 198 1.00
ACGTcount: A:0.36, C:0.06, G:0.28, T:0.30
Consensus pattern (233 bp):
AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAG
GGATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCC
GAATGGCTAATGTGAAATATATATGAGATAGGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
TATGTAGGAGATATGTAGATGTGGTAAAGCCGAATGTG
Found at i:94332234 original size:37 final size:37
Alignment explanation
Indices: 94332184--94332282 Score: 180
Period size: 37 Copynumber: 2.7 Consensus size: 37
94332174 GGAAATATAT
94332184 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
94332221 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
94332258 TCCGGGTAAGACCCGATAACTACGT
1 TCCGGGTAAGACCCGATGACTACGT
94332283 ATGGGGACTA
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:94333620 original size:40 final size:40
Alignment explanation
Indices: 94333570--94334077 Score: 785
Period size: 40 Copynumber: 12.8 Consensus size: 40
94333560 AGTTATATAG
*
94333570 CCGGGTTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
*
94333610 CTGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
*
94333650 CTGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
94333690 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
94333730 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
94333770 CCGGGCTAAGTCCC-----G-ATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
94333804 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
94333844 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
* *
94333884 CCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
94333924 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
** * * * * *
94333964 CCGGGCTAAGTCTTGGAGAGCATTCGTGTTAGAGTTATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
** * *
94334004 TAGGGTTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
* * * * *
94334044 CCAGGCTAGGTCCCAAAGAGCAATCATGCTGGTG
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
94334078 ATGTGTATTC
Statistics
Matches: 431, Mismatches: 31, Indels: 12
0.91 0.07 0.03
Matches are distributed among these distances:
34 33 0.08
35 1 0.00
39 1 0.00
40 396 0.92
ACGTcount: A:0.19, C:0.21, G:0.32, T:0.29
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
Found at i:94334291 original size:25 final size:25
Alignment explanation
Indices: 94334241--94334291 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
94334231 TGTGTAACAA
* *
94334241 CAAATGAATAGGGGCACTATATGTG
1 CAAATGAATAGAGGCACTAGATGTG
*
94334266 CAAATGATTAGAGGCACTGAGA-GTG
1 CAAATGAATAGAGGCACT-AGATGTG
94334291 C
1 C
94334292 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 20 0.91
26 2 0.09
ACGTcount: A:0.35, C:0.14, G:0.29, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTAGATGTG
Found at i:94338154 original size:47 final size:48
Alignment explanation
Indices: 94337899--94338336 Score: 741
Period size: 48 Copynumber: 9.3 Consensus size: 48
94337889 TGTACAAGAT
94337899 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
94337947 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
94337995 AAATATATATGAGATAGGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
94338043 AAATATGTATGAGATATGTATATGTGGT--A----AATGGCTAATGTG
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
94338085 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
94338133 -AATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
94338180 AAATATATATGAGATATGTATATGTGGTAAAG-CGAATGGCTAATGTG
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
94338227 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
94338275 -AATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
94338322 AAATATGTAGGAGAT
1 AAATATATATGAGAT
94338337 GTGTGTATAT
Statistics
Matches: 372, Mismatches: 9, Indels: 18
0.93 0.02 0.05
Matches are distributed among these distances:
42 40 0.11
44 1 0.00
46 1 0.00
47 139 0.37
48 191 0.51
ACGTcount: A:0.37, C:0.05, G:0.26, T:0.32
Consensus pattern (48 bp):
AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
Found at i:94338284 original size:142 final size:142
Alignment explanation
Indices: 94337899--94338336 Score: 760
Period size: 142 Copynumber: 3.1 Consensus size: 142
94337889 TGTACAAGAT
94337899 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATAT
1 AAATATATATGAGATATGTATATGTGGTAAAG-CGAATGGCTAATGTGAAATATATATGAGATAT
* *
94337964 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATAGGTATATGTGGTAAAGCC
65 GTATATGTGGTAAAGCCGAATGGCTAATGTG-AATATGTATGAGATATGTATATGTGGTAAAGCC
94338029 GAATGGCTAATGTG
129 GAATGGCTAATGTG
*
94338043 AAATATGTATGAGATATGTATATGTGGT--A---AATGGCTAATGTGAAATATATATGAGATATG
1 AAATATATATGAGATATGTATATGTGGTAAAGCGAATGGCTAATGTGAAATATATATGAGATATG
94338103 TATATGTGGTAAAGCCGAATGGCTAATGTGAATATGTATGAGATATGTATATGTGGTAAAGCCGA
66 TATATGTGGTAAAGCCGAATGGCTAATGTGAATATGTATGAGATATGTATATGTGGTAAAGCCGA
94338168 ATGGCTAATGTG
131 ATGGCTAATGTG
94338180 AAATATATATGAGATATGTATATGTGGTAAAGCGAATGGCTAATGTGAAATATATATGAGATATG
1 AAATATATATGAGATATGTATATGTGGTAAAGCGAATGGCTAATGTGAAATATATATGAGATATG
*
94338245 TATATGTGGTAAAGCCGAATGGCTAGTGTGAATATGTATGAGATATGTATATGTGGTAAAGCCGA
66 TATATGTGGTAAAGCCGAATGGCTAATGTGAATATGTATGAGATATGTATATGTGGTAAAGCCGA
*
94338310 ATGGCTAGTGTG
131 ATGGCTAATGTG
* *
94338322 AAATATGTAGGAGAT
1 AAATATATATGAGAT
94338337 GTGTGTATAT
Statistics
Matches: 281, Mismatches: 8, Indels: 12
0.93 0.03 0.04
Matches are distributed among these distances:
137 72 0.26
138 61 0.22
139 1 0.00
142 120 0.43
144 27 0.10
ACGTcount: A:0.37, C:0.05, G:0.26, T:0.32
Consensus pattern (142 bp):
AAATATATATGAGATATGTATATGTGGTAAAGCGAATGGCTAATGTGAAATATATATGAGATATG
TATATGTGGTAAAGCCGAATGGCTAATGTGAATATGTATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTG
Found at i:94338536 original size:36 final size:36
Alignment explanation
Indices: 94338477--94338570 Score: 140
Period size: 36 Copynumber: 2.7 Consensus size: 36
94338467 GGAAATATAT
94338477 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGA-CCGATGACTACGTGTGGAGATTATG
*
94338514 TCCGGGTAAGACCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCGATGACTACGTGTGGAGATTATG
*
94338550 TCC--GTAAGACCG-TAACTACGT
1 TCCGGGTAAGACCGATGACTACGT
94338571 ATGGGGACTA
Statistics
Matches: 55, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
33 8 0.15
34 9 0.16
36 27 0.49
37 11 0.20
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (36 bp):
TCCGGGTAAGACCGATGACTACGTGTGGAGATTATG
Found at i:94343610 original size:40 final size:40
Alignment explanation
Indices: 94343544--94343814 Score: 465
Period size: 40 Copynumber: 6.8 Consensus size: 40
94343534 GAACATTGGA
94343544 ATATATCCGGGCT-AGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
94343583 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
94343623 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
94343663 ACATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
94343703 ATATATCCGGGCTATGACCCGAAGGCAATTATGCG-GATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
94343742 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
94343782 ATATGTCCGGGTTAAGACCCGAAGGCAAATATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATG
94343815 TTTGCGGCTG
Statistics
Matches: 219, Mismatches: 11, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
39 50 0.23
40 169 0.77
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.23
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:94352441 original size:40 final size:40
Alignment explanation
Indices: 94352382--94352654 Score: 447
Period size: 40 Copynumber: 6.8 Consensus size: 40
94352372 GAACATTGGA
* *
94352382 ATATATCCGGGTTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
94352422 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
94352462 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
94352502 ACATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
94352542 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGGGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
94352582 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTC
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
94352622 ATATGTCCGGGTTAAGACCCGAAGGCAAATATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATG
94352655 TTTGCGGCTG
Statistics
Matches: 217, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 217 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:94356009 original size:9 final size:9
Alignment explanation
Indices: 94355995--94356024 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
94355985 CTAACATAAG
94355995 AATAATTGA
1 AATAATTGA
94356004 AATAATTGA
1 AATAATTGA
*
94356013 AATAATAGA
1 AATAATTGA
94356022 AAT
1 AAT
94356025 TTATATATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.10, T:0.30
Consensus pattern (9 bp):
AATAATTGA
Found at i:94359147 original size:21 final size:20
Alignment explanation
Indices: 94359121--94359163 Score: 68
Period size: 21 Copynumber: 2.1 Consensus size: 20
94359111 CAAAGTATGC
*
94359121 ACTACAAATTAATAATAGCAA
1 ACTACAAATTAACAATAG-AA
94359142 ACTACAAATTAACAATAGAA
1 ACTACAAATTAACAATAGAA
94359162 AC
1 AC
94359164 AAGAAACACA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.58, C:0.16, G:0.05, T:0.21
Consensus pattern (20 bp):
ACTACAAATTAACAATAGAA
Found at i:94359827 original size:2 final size:2
Alignment explanation
Indices: 94359820--94359886 Score: 125
Period size: 2 Copynumber: 33.5 Consensus size: 2
94359810 CAAACAAAAG
94359820 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
*
94359862 GA GA GA GA GA AA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA G
94359887 CTCTCAATTC
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 63 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
GA
Found at i:94363203 original size:42 final size:42
Alignment explanation
Indices: 94363144--94363230 Score: 174
Period size: 42 Copynumber: 2.1 Consensus size: 42
94363134 CTGAGCAAAC
94363144 TCTTTCCTCTTTTCATTTATTTTAAACATGTTTGCTTTGTGT
1 TCTTTCCTCTTTTCATTTATTTTAAACATGTTTGCTTTGTGT
94363186 TCTTTCCTCTTTTCATTTATTTTAAACATGTTTGCTTTGTGT
1 TCTTTCCTCTTTTCATTTATTTTAAACATGTTTGCTTTGTGT
94363228 TCT
1 TCT
94363231 ATGTTTTTAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.14, C:0.17, G:0.09, T:0.60
Consensus pattern (42 bp):
TCTTTCCTCTTTTCATTTATTTTAAACATGTTTGCTTTGTGT
Found at i:94369140 original size:17 final size:17
Alignment explanation
Indices: 94369105--94369142 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
94369095 TATTGACGGC
*
94369105 AAGGAAGGTTCGGTAGT
1 AAGGAAGGTTCGGCAGT
*
94369122 AAGGAAGGTTCGGCGGT
1 AAGGAAGGTTCGGCAGT
94369139 AAGG
1 AAGG
94369143 TGTGGTGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.29, C:0.08, G:0.45, T:0.18
Consensus pattern (17 bp):
AAGGAAGGTTCGGCAGT
Found at i:94371079 original size:21 final size:21
Alignment explanation
Indices: 94371055--94371095 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
94371045 GGTCCTTATA
94371055 TGGTAATTAGACCATTAAAGC
1 TGGTAATTAGACCATTAAAGC
94371076 TGGTAATTAGACCATTAAAG
1 TGGTAATTAGACCATTAAAG
94371096 AAAAGTATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.39, C:0.12, G:0.20, T:0.29
Consensus pattern (21 bp):
TGGTAATTAGACCATTAAAGC
Found at i:94381151 original size:30 final size:28
Alignment explanation
Indices: 94381088--94381150 Score: 108
Period size: 28 Copynumber: 2.2 Consensus size: 28
94381078 ACGCACGGGC
*
94381088 GTGTGTGACACACGGCCATGTGGTTAGG
1 GTGTGTGACACACGGCCATGCGGTTAGG
94381116 GTGTGTGACACACGGCCATGCGGTTAGG
1 GTGTGTGACACACGGCCATGCGGTTAGG
*
94381144 CTGTGTG
1 GTGTGTG
94381151 TACCATGCAC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.16, C:0.19, G:0.40, T:0.25
Consensus pattern (28 bp):
GTGTGTGACACACGGCCATGCGGTTAGG
Found at i:94392899 original size:54 final size:54
Alignment explanation
Indices: 94392813--94392974 Score: 229
Period size: 54 Copynumber: 3.0 Consensus size: 54
94392803 TAGAGGAAGC
* *
94392813 GTCCTGGTGGCTATGCCATAATTATCTAATCTGGTGGCTTTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATCT
*
94392867 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATCT
* * * * *
94392921 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTGACTTCGTCACA-ATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTGGCTTTGCCACATATATCT
94392974 G
1 G
94392975 GCAGCCTCGC
Statistics
Matches: 98, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
53 13 0.13
54 85 0.87
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTTTGCCACATATATCT
Found at i:94392967 original size:27 final size:27
Alignment explanation
Indices: 94392816--94392974 Score: 166
Period size: 27 Copynumber: 5.9 Consensus size: 27
94392806 AGGAAGCGTC
* * *
94392816 CTGGTGGCTATGCCATAATTATCT-AAT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
* *
94392843 CTGGTGGCTTTGCCACATATATCTGT-C
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
*
94392870 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
94392897 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
94392924 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
94392951 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
94392975 GCAGCCTCGC
Statistics
Matches: 115, Mismatches: 9, Indels: 16
0.82 0.06 0.11
Matches are distributed among these distances:
26 10 0.09
27 103 0.90
28 2 0.02
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:94392968 original size:81 final size:80
Alignment explanation
Indices: 94392816--94392974 Score: 189
Period size: 81 Copynumber: 2.0 Consensus size: 80
94392806 AGGAAGCGTC
* * *
94392816 CTGGTGGCTATGCCATAATTATCTAATCTGGTGGCTTTGCCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
94392881 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* ** *
94392897 CTGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAT-TATCTAATCTGGTGGCTCTGCCACATATATCTGT-CCTGGTGACT
*
94392960 -TCGTCACAATATCTG
64 AT-GCCACAATATCTG
94392975 GCAGCCTCGC
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
80 17 0.25
81 50 0.75
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.35
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
GCCACAATATCTGAT
Found at i:94394069 original size:46 final size:47
Alignment explanation
Indices: 94394011--94394133 Score: 142
Period size: 47 Copynumber: 2.6 Consensus size: 47
94394001 GCTCGTATGG
* *
94394011 GCTTACCGATTCAACT-TGTAAGAGCTTACTATTTT-AGCTCATTGGA
1 GCTTACCAATTCAACTCGGT-AGAGCTTACTATTTTCAGCTCATTGGA
* *
94394057 GCTTACCAATTCAGCTCGGTAGAGCTTACTGTTTTCAGCTCATTGGA
1 GCTTACCAATTCAACTCGGTAGAGCTTACTATTTTCAGCTCATTGGA
** * * *
94394104 GCTTACCGTTTTAGCTCGTTAGAGCTTACT
1 GCTTACCAATTCAACTCGGTAGAGCTTACT
94394134 GTTCATCAGT
Statistics
Matches: 67, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
46 28 0.42
47 39 0.58
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (47 bp):
GCTTACCAATTCAACTCGGTAGAGCTTACTATTTTCAGCTCATTGGA
Found at i:94394097 original size:24 final size:24
Alignment explanation
Indices: 94394031--94394136 Score: 101
Period size: 23 Copynumber: 4.5 Consensus size: 24
94394021 TCAACTTGTA
* *
94394031 AGAGCTTACTATTTT-AGCTCATT
1 AGAGCTTACTGTTTTCAGCTCGTT
* *** *
94394054 GGAGCTTAC-CAATTCAGCTCGGT
1 AGAGCTTACTGTTTTCAGCTCGTT
*
94394077 AGAGCTTACTGTTTTCAGCTCATT
1 AGAGCTTACTGTTTTCAGCTCGTT
* *
94394101 GGAGCTTACCGTTTT-AGCTCGTT
1 AGAGCTTACTGTTTTCAGCTCGTT
94394124 AGAGCTTACTGTT
1 AGAGCTTACTGTT
94394137 CATCAGTTCA
Statistics
Matches: 64, Mismatches: 17, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
22 2 0.03
23 40 0.62
24 22 0.34
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (24 bp):
AGAGCTTACTGTTTTCAGCTCGTT
Found at i:94394109 original size:47 final size:46
Alignment explanation
Indices: 94394031--94394136 Score: 158
Period size: 47 Copynumber: 2.3 Consensus size: 46
94394021 TCAACTTGTA
*
94394031 AGAGCTTACTATTTTAGCTCATTGGAGCTTACCAATTCAGCTCGGT
1 AGAGCTTACTGTTTTAGCTCATTGGAGCTTACCAATTCAGCTCGGT
** * *
94394077 AGAGCTTACTGTTTTCAGCTCATTGGAGCTTACCGTTTTAGCTCGTT
1 AGAGCTTACTGTTTT-AGCTCATTGGAGCTTACCAATTCAGCTCGGT
94394124 AGAGCTTACTGTT
1 AGAGCTTACTGTT
94394137 CATCAGTTCA
Statistics
Matches: 54, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
46 14 0.26
47 40 0.74
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (46 bp):
AGAGCTTACTGTTTTAGCTCATTGGAGCTTACCAATTCAGCTCGGT
Found at i:94395940 original size:14 final size:14
Alignment explanation
Indices: 94395921--94395950 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
94395911 GATCCTATAA
94395921 AATGAGGAAAAAGG
1 AATGAGGAAAAAGG
94395935 AATGAGGAAAAAGG
1 AATGAGGAAAAAGG
94395949 AA
1 AA
94395951 GGGGTATGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.60, C:0.00, G:0.33, T:0.07
Consensus pattern (14 bp):
AATGAGGAAAAAGG
Found at i:94397077 original size:48 final size:48
Alignment explanation
Indices: 94396960--94397289 Score: 293
Period size: 48 Copynumber: 6.8 Consensus size: 48
94396950 GTAAAATGTT
*** * ** * *
94396960 GATGCCATGTCCTGGACAGGGTCTTACACTGGCTCTTATACATCAGTGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATA-A-AAATGCC
* * * ** * *
94397010 GATGCCATGTCCCAGACATGGTCTTATACTGACAAATATAAAAATGTC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAAAAATGCC
* *** *
94397058 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATTGAGGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAAAAATGCC
* *
94397106 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAAAAATGCC
* * * *** *
94397154 GATTCCATGTTCCAAACATGGTCTTACACTGGCT-AGCGTATTGAGGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCA-CATAAAAATGCC
* * * * * *
94397202 GATGCAATGTCCCAGACATGGTCTTACACTGGCTTACATAATACTGCT
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAAAAATGCC
* *
94397250 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATA
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATA
94397290 TCGCCGTGGT
Statistics
Matches: 226, Mismatches: 52, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
47 1 0.00
48 191 0.85
49 2 0.01
50 32 0.14
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAAAAATGCC
Found at i:94397162 original size:96 final size:96
Alignment explanation
Indices: 94396979--94397290 Score: 419
Period size: 96 Copynumber: 3.2 Consensus size: 96
94396969 TCCTGGACAG
** * * * * *
94396979 GGTCTTACACTGGCTCTTATACATCAGTGCCGATGCCATGTCCCAGACATGGTCTTATACTGACA
1 GGTCTTACACTGGCTCACATA-TTGAG-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT
* *
94397044 AATATAAAAATGTCGATGCCATGTTCCAAACAT
64 AACATAAAAATGCCGATGCCATGTTCCAAACAT
*
94397077 GGTCTTACACTGGCTCACATATTGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA
1 GGTCTTACACTGGCTCACATATTGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTAA
* *
94397142 CATAACAATGCCGATTCCATGTTCCAAACAT
66 CATAAAAATGCCGATGCCATGTTCCAAACAT
* * *
94397173 GGTCTTACACTGGCT-AGCGTATTGAGGCCGATGCAATGTCCCAGACATGGTCTTACACTGGCTT
1 GGTCTTACACTGGCTCA-CATATTGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTA
* * *
94397237 ACATAATACTGCTGATGCCATGTTCCAAACAT
65 ACATAAAAATGCCGATGCCATGTTCCAAACAT
*
94397269 GGTCTTACACTGGCTCTCATAT
1 GGTCTTACACTGGCTCACATAT
94397291 CGCCGTGGTC
Statistics
Matches: 191, Mismatches: 21, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
95 1 0.01
96 168 0.88
97 3 0.02
98 19 0.10
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (96 bp):
GGTCTTACACTGGCTCACATATTGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTAA
CATAAAAATGCCGATGCCATGTTCCAAACAT
Found at i:94407839 original size:15 final size:15
Alignment explanation
Indices: 94407819--94407849 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
94407809 CTTATTATAA
94407819 ATTAAAGTTTAATTT
1 ATTAAAGTTTAATTT
94407834 ATTAAAGTTTAATTT
1 ATTAAAGTTTAATTT
94407849 A
1 A
94407850 CATATAACCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (15 bp):
ATTAAAGTTTAATTT
Found at i:94408463 original size:14 final size:15
Alignment explanation
Indices: 94408439--94408468 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
94408429 AAATATCAAA
94408439 ACAAGAATTAAGAAC
1 ACAAGAATTAAGAAC
94408454 ACAA-AATTAAGAAC
1 ACAAGAATTAAGAAC
94408468 A
1 A
94408469 AGTCAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.13, G:0.10, T:0.13
Consensus pattern (15 bp):
ACAAGAATTAAGAAC
Found at i:94413704 original size:40 final size:40
Alignment explanation
Indices: 94413627--94413884 Score: 360
Period size: 40 Copynumber: 6.5 Consensus size: 40
94413617 AAACCAAGTA
* * *
94413627 CCTTCGAGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
94413666 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
94413706 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
94413746 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* **
94413786 CCTTCGGGACTTAGCCCAGATATAGTAACTCAAACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * *
94413826 CCTTCGGGGCTTAGCCCAGA-ATTAGTCACTAGCACAAATA
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
94413866 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
94413885 TTATCATCCG
Statistics
Matches: 198, Mismatches: 18, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
39 14 0.07
40 184 0.93
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:94425203 original size:300 final size:299
Alignment explanation
Indices: 94424662--94425260 Score: 1063
Period size: 300 Copynumber: 2.0 Consensus size: 299
94424652 GACGAAGGAG
*
94424662 GAGTTGGGTTCGGTTTCTTCGTCTTTAGAAGCAAGAAAAAAGATGTTCAACACAACAAAAGGAAA
1 GAGTTGGGTTCGGTTTCTTCGACTTTAGAAGCAAGAAAAAAGATGTTCAACACAACAAAAGGAAA
*
94424727 AAGGCTACCAATGTTCGGCTAAAGAGAATTCGGCAGGCTTGACTCAAAGACGAAAAGAGAAGAAA
66 AAGGCTACCAATGTTCGGCTAAAGAGAATTCGACAGGCTTGACTCAAAGACGAAAAGAGAAGAAA
*
94424792 TTGAGAAGAGGTAAGAGTCCCAATTAATTCGGCACAAAAGTGTAACACAAAAAAACCAAAAGTTG
131 TTGAGAAGAGGTAAGAGTCACAATTAATTCGGCACAAAAGTGTAACACAAAAAAACCAAAAGTTG
*
94424857 CAAAGAAGGATTCAACACCTACTCTTAAACATCAATTATCGAAAATGCCTAACCCAAAACCCCTT
196 CAAAGAAGGATTCAACACCTACTCCTAAACATCAATTATCGAAAATGCCTAACCCAAAACCCCTT
*
94424922 GGTTGAATTTGCACCCTCACACACACCCATTCGGCTACA
261 GGTCGAATTTGCACCCTCACACACACCCATTCGGCTACA
* *
94424961 GAGTTGGGTTCGGTTTCTTTGACTTTAGAAGCAAGAAAAAAGATGTTCAACAGAACAAAAGGAAA
1 GAGTTGGGTTCGGTTTCTTCGACTTTAGAAGCAAGAAAAAAGATGTTCAACACAACAAAAGG-AA
*
94425026 AAAGGCTACCAATGTTTGGCTAAAGAGAATTCGACAGGCTTGACTCAAAGACGAAAAGAGAAGAA
65 AAAGGCTACCAATGTTCGGCTAAAGAGAATTCGACAGGCTTGACTCAAAGACGAAAAGAGAAGAA
*
94425091 ATTGAGAAGAGGTAAGAGTCACAATTAATTCGGCACAAAAGTGTAACACCAAAAAACCAAAAGTT
130 ATTGAGAAGAGGTAAGAGTCACAATTAATTCGGCACAAAAGTGTAACACAAAAAAACCAAAAGTT
* ** *
94425156 TCAAAGAAGGATTCGGCACTTACTCCTAAACATCAATTATCGAAAATGCCTAACCCAAAACCCCT
195 GCAAAGAAGGATTCAACACCTACTCCTAAACATCAATTATCGAAAATGCCTAACCCAAAACCCCT
*
94425221 TGGTCGAATTTGCACCCTCACACACGCCCATTCGGCTACA
260 TGGTCGAATTTGCACCCTCACACACACCCATTCGGCTACA
94425261 ACTCCTCCCC
Statistics
Matches: 285, Mismatches: 14, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
299 59 0.21
300 226 0.79
ACGTcount: A:0.40, C:0.21, G:0.19, T:0.21
Consensus pattern (299 bp):
GAGTTGGGTTCGGTTTCTTCGACTTTAGAAGCAAGAAAAAAGATGTTCAACACAACAAAAGGAAA
AAGGCTACCAATGTTCGGCTAAAGAGAATTCGACAGGCTTGACTCAAAGACGAAAAGAGAAGAAA
TTGAGAAGAGGTAAGAGTCACAATTAATTCGGCACAAAAGTGTAACACAAAAAAACCAAAAGTTG
CAAAGAAGGATTCAACACCTACTCCTAAACATCAATTATCGAAAATGCCTAACCCAAAACCCCTT
GGTCGAATTTGCACCCTCACACACACCCATTCGGCTACA
Found at i:94431237 original size:33 final size:33
Alignment explanation
Indices: 94431200--94431280 Score: 126
Period size: 33 Copynumber: 2.5 Consensus size: 33
94431190 GTGAATCACA
*
94431200 CAGTATCAATACAGTCTGGGCCAAAGCCCTATT
1 CAGTATCAGTACAGTCTGGGCCAAAGCCCTATT
* *
94431233 CAGTATCAGTACATTCTGGGCTAAAGCCCTATT
1 CAGTATCAGTACAGTCTGGGCCAAAGCCCTATT
*
94431266 TAGTATCAGTACAGT
1 CAGTATCAGTACAGT
94431281 GCAAAATGCA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (33 bp):
CAGTATCAGTACAGTCTGGGCCAAAGCCCTATT
Found at i:94431956 original size:19 final size:19
Alignment explanation
Indices: 94431921--94431958 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
94431911 CGTGCGGGCC
*
94431921 CACGTGCCCATTGGGCCCA
1 CACGTGCCCATTAGGCCCA
94431940 CACG-GCCCATCTAGGCCCA
1 CACGTGCCCAT-TAGGCCCA
94431959 TAGAAGCCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.18, C:0.45, G:0.24, T:0.13
Consensus pattern (19 bp):
CACGTGCCCATTAGGCCCA
Found at i:94442003 original size:41 final size:40
Alignment explanation
Indices: 94441945--94442092 Score: 142
Period size: 41 Copynumber: 3.6 Consensus size: 40
94441935 GAGCTTGGTC
*
94441945 TCGAAGGGCTTTTGAGCCAGTGCTAATAACTGAACTTAGTT
1 TCGAAGGGC-TTTGAGCCAGTGCTAATAACCGAACTTAGTT
*
94441986 TCGAAGGGCTTTAGAGCCAGTG-TCAA-AACCGGACTTAGTT
1 TCGAAGGGCTTT-GAGCCAGTGCT-AATAACCGAACTTAGTT
* * * * *
94442026 CCGAAGGGCCTTCGAGCCAGTGATCTAAT--CCGAGCTTGGTC
1 TCGAAGGG-CTTTGAGCCAGTG--CTAATAACCGAACTTAGTT
94442067 TCGAAGGGCTCTTGAGCCAGTGCTAA
1 TCGAAGGGCT-TTGAGCCAGTGCTAA
94442093 GAATCGGGCT
Statistics
Matches: 89, Mismatches: 10, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
39 4 0.04
40 34 0.38
41 48 0.54
42 2 0.02
43 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCGAAGGGCTTTGAGCCAGTGCTAATAACCGAACTTAGTT
Found at i:94450079 original size:40 final size:41
Alignment explanation
Indices: 94449993--94450093 Score: 125
Period size: 40 Copynumber: 2.5 Consensus size: 41
94449983 GCTTCGTCTT
* * *
94449993 GAAGGGCTTTTGAGCCAGTGCTAATAACTGAACTTAGTTTC
1 GAAGGGCTTTAGAGCCAGTGCTAATAACCGAACTTAGTTCC
*
94450034 GAAGGGCTTTAGAGCCAGTG-TCAA-AACCGGACTTAGTTCC
1 GAAGGGCTTTAGAGCCAGTGCT-AATAACCGAACTTAGTTCC
* *
94450074 GAAGGGCCTTCGAGCCAGTG
1 GAAGGGCTTTAGAGCCAGTG
94450094 ATCTAATCCG
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
40 32 0.60
41 21 0.40
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.25
Consensus pattern (41 bp):
GAAGGGCTTTAGAGCCAGTGCTAATAACCGAACTTAGTTCC
Found at i:94450130 original size:41 final size:41
Alignment explanation
Indices: 94449976--94450131 Score: 119
Period size: 41 Copynumber: 3.9 Consensus size: 41
94449966 TCGGGGTTTA
* * * *
94449976 AATCTGAGCTTCGTCTTGAAGGGCT-TTTGAGCCAGTG-CT
1 AATCCGAGCTTAGTCTCGAAGGGCTCTTAGAGCCAGTGTCT
* * * *
94450015 AATAACTGAACTTAGTTTCGAAGGGCT-TTAGAGCCAGTGTCA
1 AAT--CCGAGCTTAGTCTCGAAGGGCTCTTAGAGCCAGTGTCT
* *
94450057 AAACCG-GACTTAGT-TCCGAAGGGC-CTTCGAGCCAGTGATCT
1 AATCCGAG-CTTAGTCT-CGAAGGGCTCTTAGAGCCAGTG-TCT
*
94450098 AATCCGAGCTTGGTCTCGAAGGGCTCTT-GAGCCA
1 AATCCGAGCTTAGTCTCGAAGGGCTCTTAGAGCCA
94450132 ATGCTAAGAA
Statistics
Matches: 94, Mismatches: 13, Indels: 18
0.75 0.10 0.14
Matches are distributed among these distances:
39 4 0.04
40 27 0.29
41 55 0.59
42 8 0.09
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (41 bp):
AATCCGAGCTTAGTCTCGAAGGGCTCTTAGAGCCAGTGTCT
Found at i:94452324 original size:18 final size:18
Alignment explanation
Indices: 94452298--94452341 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
94452288 TAGTCTTGAT
*
94452298 GATGAATCCGGCTTTTAA
1 GATGGATCCGGCTTTTAA
94452316 GATGGATCCGGCTTTTAA
1 GATGGATCCGGCTTTTAA
94452334 GATGGATC
1 GATGGATC
94452342 AGTTGGCTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (18 bp):
GATGGATCCGGCTTTTAA
Found at i:94453239 original size:438 final size:437
Alignment explanation
Indices: 94452407--94453258 Score: 1124
Period size: 438 Copynumber: 1.9 Consensus size: 437
94452397 TCTTCAAGGG
* * * * *
94452407 TGTATTTATAGGCTTTGGAATGCCTATGAACCCTCAAAAGTGGCCTTTTTCGAATTGGACTTAAC
1 TGTATTTATAGGCTTTAGAATGCCTAAGAACCCTCAAAAGTGGCCTTTTCCGAATTAGACTCAAC
* * ** * *
94452472 TTAGGCTCGGCAGGGACACGCCCGTGTGCGATTACTTCAGGCTGTGTTCGAGCCGTTAGAATGGC
66 TTAGGCTCGACAGGGACACGCCCATGTGCGATTACTTCAGGCCATGGTCAAGCCGTTAGAATGGC
* * * ** * * *
94452537 ACGGGCGTGTGCTATACCCGTGTGAGTCATGCTTCGATTCTGCCGGATTGACACGGCCGTGTGGT
131 ACGAGCGTGTGCTACACCCGTGTGAGTCATGCTTCAATTCTGCCAAATTCACACAGCCATGTGGT
*
94452602 CTGCCTGTGTGAGGAAGTCTAGGCTGTGTTAAGTTCGTACTTTGGCCCATTTTCTCTGTTTTTGG
196 CTGCCCGTGTGAGGAAGTCTAGGCTGTGTTAAGTTCGTACTTTGGCCCATTTTCTCTGTTTTTGG
* * * * *
94452667 CCCATTTTTCGTTTCTTTCGCTTTCCTATACTCTCCTAAGTATAAAACATGAAATTAAAGCATTA
261 CCCATTTCTCGTTCCTTTCACTCTCCTATACTCACCTAAGTATAAAACATGAAATTAAAGCATTA
* * * *
94452732 GGAGTACCAAATTCACCAATTCTAATAGAAAATCATCCATAAAATGCGTTAAACATAGGGTAAAA
326 GGAGCACCAAATTCACCAAATCTAAGAGAAAATCATCCATAAAATGCGCTAAACATAGGGTAAAA
94452797 ATATGTATAAATTACGGTTTATCACCCCCTTTCCCTCCTCCTCTAGT
391 ATATGTATAAATTACGGTTTATCACCCCCTTTCCCTCCTCCTCTAGT
* * *
94452844 TGTATTTATAGGCTTTAGAATGCTTAAGAACCCTCAAAATTGGCCTTTTCCGAATTAGACTCAAT
1 TGTATTTATAGGCTTTAGAATGCCTAAGAACCCTCAAAAGTGGCCTTTTCCGAATTAGACTCAAC
* *
94452909 TTGGGCTCGACAGGGACACGCCCATGTGCGATTACTTCAGGCCATGGTCAAGCTTGTTA-AATAG
66 TTAGGCTCGACAGGGACACGCCCATGTGCGATTACTTCAGGCCATGGTCAAGC-CGTTAGAAT-G
* * *
94452973 GCACGAGCGTGTAG-TCCACCTGTGTGAGTCGTGCTTCAATTCTGCCAAATTCACACAGCCATGT
129 GCACGAGCGTGT-GCTACACCCGTGTGAGTCATGCTTCAATTCTGCCAAATTCACACAGCCATGT
* * * *
94453037 GGTTTGCCCGTGTGAGGAGGTCTAGG-TCGTGTTGATTTCGTA-TGTTGGCCCATTTTCTCTGTT
193 GGTCTGCCCGTGTGAGGAAGTCTAGGCT-GTGTTAAGTTCGTACT-TTGGCCCATTTTCTCTGTT
* * * *
94453100 TTTGGCCCGTTTCTCGTTCCTTTCACTCTCCTATGCTCACCTAAGTATAAAATATGAAATTAAGG
256 TTTGGCCCATTTCTCGTTCCTTTCACTCTCCTATACTCACCTAAGTATAAAACATGAAATTAAAG
*** * * *
94453165 CATTAGGAGCATTGAATTCACCAAATGTAAG-GAAAAATCATCCATAAAATGTGCTAAGCAT-GG
321 CATTAGGAGCACCAAATTCACCAAATCTAAGAG-AAAATCATCCATAAAATGCGCTAAACATAGG
94453228 G-AGAGAAATATGTATAAATTACGGTTTATCA
385 GTA-A-AAATATGTATAAATTACGGTTTATCA
94453259 GTTTTCTTAC
Statistics
Matches: 356, Mismatches: 51, Indels: 15
0.84 0.12 0.04
Matches are distributed among these distances:
436 1 0.00
437 113 0.32
438 241 0.68
439 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.32
Consensus pattern (437 bp):
TGTATTTATAGGCTTTAGAATGCCTAAGAACCCTCAAAAGTGGCCTTTTCCGAATTAGACTCAAC
TTAGGCTCGACAGGGACACGCCCATGTGCGATTACTTCAGGCCATGGTCAAGCCGTTAGAATGGC
ACGAGCGTGTGCTACACCCGTGTGAGTCATGCTTCAATTCTGCCAAATTCACACAGCCATGTGGT
CTGCCCGTGTGAGGAAGTCTAGGCTGTGTTAAGTTCGTACTTTGGCCCATTTTCTCTGTTTTTGG
CCCATTTCTCGTTCCTTTCACTCTCCTATACTCACCTAAGTATAAAACATGAAATTAAAGCATTA
GGAGCACCAAATTCACCAAATCTAAGAGAAAATCATCCATAAAATGCGCTAAACATAGGGTAAAA
ATATGTATAAATTACGGTTTATCACCCCCTTTCCCTCCTCCTCTAGT
Found at i:94457594 original size:144 final size:144
Alignment explanation
Indices: 94457331--94457698 Score: 468
Period size: 144 Copynumber: 2.5 Consensus size: 144
94457321 AATGATGATA
* * * ** * *
94457331 CCATGTCCCGGACATGGTCTTACACTAGCTCTCATACATCGGTGCCGATGCTATGTCTCAGACAT
1 CCATGTCCCAGACATGGTCTTACACTGGCTCACATA-ATAAG-GCCGATGCTATGTCCCAAACAT
* * * * * * *
94457396 GGTCTTACACTGACACATATAACAATGCCGATGCCATGTTCCAAACATGGTCTTACATTGGCTTG
64 GGTCTTACACTGGCTCACATAACAATGCCGATGCCATATTCAAAACATGGTCTTACACTGGCTCG
* *
94457461 CATATTGAGGCTGATG
129 CATATTGAGACCGATG
* **
94457477 TCATGTCCCAGACATGGTCTTACACTGGCTCACATTTTAAGGCCGATG-TCATGTCCCAAACATG
1 CCATGTCCCAGACATGGTCTTACACTGGCTCACATAATAAGGCCGATGCT-ATGTCCCAAACATG
94457541 GTCTTACACTGGCTCACATAACAATGCCGATGCCATATTCAAAACATGGTCTTACACTGGCTCGC
65 GTCTTACACTGGCTCACATAACAATGCCGATGCCATATTCAAAACATGGTCTTACACTGGCTCGC
94457606 ATATTGAGACCGATG
130 ATATTGAGACCGATG
* * * ** * *
94457621 CCATGTCCTAGACATGGTCTTACATTGGCTCACATAACAATACTGATGCTATGTTCCAAACATGG
1 CCATGTCCCAGACATGGTCTTACACTGGCTCACATAATAAGGCCGATGCTATGTCCCAAACATGG
94457686 TCTTACACTGGCT
66 TCTTACACTGGCT
94457699 TGCATGTTGA
Statistics
Matches: 191, Mismatches: 29, Indels: 6
0.85 0.13 0.03
Matches are distributed among these distances:
143 1 0.01
144 156 0.82
145 3 0.02
146 31 0.16
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (144 bp):
CCATGTCCCAGACATGGTCTTACACTGGCTCACATAATAAGGCCGATGCTATGTCCCAAACATGG
TCTTACACTGGCTCACATAACAATGCCGATGCCATATTCAAAACATGGTCTTACACTGGCTCGCA
TATTGAGACCGATG
Found at i:94457714 original size:144 final size:144
Alignment explanation
Indices: 94457331--94457747 Score: 426
Period size: 144 Copynumber: 2.9 Consensus size: 144
94457321 AATGATGATA
* * * * * * *
94457331 CCATGTCCCGGACATGGTCTTACACTAGCTCTCAT-ACATCGGTGCCGATG-CTATGTCTCAGAC
1 CCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA--AG-ACCGATGTC-ATGTCCCAAAC
* * * * *
94457394 ATGGTCTTACACTGACACATATAACAATGCCGATGCCATGTTCCAAACATGGTCTTACATTGGCT
62 ATGGTCTTACACTGGCTCACATAACAAGGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCT
* * *
94457459 TGCATATTGAGGCTGATG
127 CGCATATTGAGACCGATG
* *** *
94457477 TCATGTCCCAGACATGGTCTTACACTGGCTCACATTTTAAGGCCGATGTCATGTCCCAAACATGG
1 CCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAAGACCGATGTCATGTCCCAAACATGG
* * *
94457542 TCTTACACTGGCTCACATAACAATGCCGATGCCATATTCAAAACATGGTCTTACACTGGCTCGCA
66 TCTTACACTGGCTCACATAACAAGGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCA
94457607 TATTGAGACCGATG
131 TATTGAGACCGATG
* * * * *
94457621 CCATGTCCTAGACATGGTCTTACATTGGCTCACATAACAATACTGATG-CTATGTTCCAAACATG
1 CCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAAGACCGATGTC-ATGTCCCAAACATG
** **** * ** *
94457685 GTCTTACACTGGCTTGCATGTTGAGGCCGATGCCACGCCCCATACATGGTCTTACACTGGCTC
65 GTCTTACACTGGCTCACATAACAAGGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTC
94457748 TTATATCTCC
Statistics
Matches: 227, Mismatches: 41, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
143 1 0.00
144 192 0.85
145 2 0.01
146 31 0.14
147 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (144 bp):
CCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAAGACCGATGTCATGTCCCAAACATGG
TCTTACACTGGCTCACATAACAAGGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCA
TATTGAGACCGATG
Found at i:94457717 original size:48 final size:48
Alignment explanation
Indices: 94457342--94457747 Score: 330
Period size: 48 Copynumber: 8.4 Consensus size: 48
94457332 CATGTCCCGG
* * * ** * *
94457342 ACATGGTCTTACACTAGCTCTCATACATCGGTGCCGATGCTATG-TCTCAG
1 ACATGGTCTTACACTGGCTCACATA-TTAAG-GCCGATGCCATGTTC-CAA
* * * ** *
94457392 ACATGGTCTTACACTGACACATATAACAATGCCGATGCCATGTTCCAA
1 ACATGGTCTTACACTGGCTCACATATTAAGGCCGATGCCATGTTCCAA
* ** * * * * *
94457440 ACATGGTCTTACATTGGCTTGCATATTGAGGCTGATGTCATGTCCCAG
1 ACATGGTCTTACACTGGCTCACATATTAAGGCCGATGCCATGTTCCAA
* * *
94457488 ACATGGTCTTACACTGGCTCACATTTTAAGGCCGATGTCATGTCCCAA
1 ACATGGTCTTACACTGGCTCACATATTAAGGCCGATGCCATGTTCCAA
** * * *
94457536 ACATGGTCTTACACTGGCTCACATAACAATGCCGATGCCATATTCAAA
1 ACATGGTCTTACACTGGCTCACATATTAAGGCCGATGCCATGTTCCAA
* * * *
94457584 ACATGGTCTTACACTGGCTCGCATATTGAGACCGATGCCATG-TCCTAG
1 ACATGGTCTTACACTGGCTCACATATTAAGGCCGATGCCATGTTCC-AA
* ** ** * *
94457632 ACATGGTCTTACATTGGCTCACATAACAATACTGATGCTATGTTCCAA
1 ACATGGTCTTACACTGGCTCACATATTAAGGCCGATGCCATGTTCCAA
** * * * ** *
94457680 ACATGGTCTTACACTGGCTTGCATGTTGAGGCCGATGCCACGCCCCAT
1 ACATGGTCTTACACTGGCTCACATATTAAGGCCGATGCCATGTTCCAA
94457728 ACATGGTCTTACACTGGCTC
1 ACATGGTCTTACACTGGCTC
94457748 TTATATCTCC
Statistics
Matches: 279, Mismatches: 74, Indels: 8
0.77 0.20 0.02
Matches are distributed among these distances:
47 2 0.01
48 251 0.90
49 6 0.02
50 20 0.07
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (48 bp):
ACATGGTCTTACACTGGCTCACATATTAAGGCCGATGCCATGTTCCAA
Found at i:94461237 original size:28 final size:28
Alignment explanation
Indices: 94461199--94461283 Score: 98
Period size: 28 Copynumber: 3.0 Consensus size: 28
94461189 TGCCAGTATG
*
94461199 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAAGCCCAATCACATTCATA
* * *
94461227 TGTCCCATTAAGCCTAAATCACATTTATA
1 TGGCCCATTAAGCC-CAATCACATTCATA
* * *
94461256 TGGCCCGTTAGGCCCAGTCACATTCATA
1 TGGCCCATTAAGCCCAATCACATTCATA
94461284 ATCATGCTCA
Statistics
Matches: 46, Mismatches: 10, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
28 24 0.52
29 22 0.48
ACGTcount: A:0.29, C:0.28, G:0.13, T:0.29
Consensus pattern (28 bp):
TGGCCCATTAAGCCCAATCACATTCATA
Found at i:94462621 original size:16 final size:16
Alignment explanation
Indices: 94462597--94462628 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
94462587 AAGTTAGAGA
94462597 TTTCAGGATTTTTGGG
1 TTTCAGGATTTTTGGG
*
94462613 TTTCGGGATTTTTGGG
1 TTTCAGGATTTTTGGG
94462629 GCATTACATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.06, G:0.34, T:0.50
Consensus pattern (16 bp):
TTTCAGGATTTTTGGG
Found at i:94467745 original size:46 final size:45
Alignment explanation
Indices: 94467618--94467745 Score: 152
Period size: 47 Copynumber: 2.8 Consensus size: 45
94467608 ATCTTGAGGT
* *
94467618 CGATGCATGTCCCAAACATGTCTTACACTAGCGCTCGTTTCAATGC
1 CGATGCATGTCCCAAACATGTCTTACACTAGCTCTCG-ATCAATGC
*
94467664 CAATGCCATGTCCCAAACATGGTCTTACACTAGCTCTC-AT-AATGTGGC
1 CGATG-CATGTCCCAAACAT-GTCTTACACTAGCTCTCGATCAA--T-GC
*
94467712 TGATGCATGTCCCAAACATGTCTTACACTAGCTC
1 CGATGCATGTCCCAAACATGTCTTACACTAGCTC
94467746 ACACAAGTGA
Statistics
Matches: 72, Mismatches: 5, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
45 2 0.03
46 20 0.28
47 29 0.40
48 21 0.29
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (45 bp):
CGATGCATGTCCCAAACATGTCTTACACTAGCTCTCGATCAATGC
Done.