Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 283 of 349
Found at i:94474426 original size:46 final size:45
Alignment explanation
Indices: 94474331--94474551 Score: 196
Period size: 46 Copynumber: 4.8 Consensus size: 45
94474321 AAGGTAAGGT
** *
94474331 GCCGATGCCATGTCCCAGACATGGTCTTACACT-GAC-AGAT-TTTATG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAG-CTTCATCTTGA-G
* *
94474377 GCCGATGCATGTCCCAGACATGTCTCACACTGGCTTACATCTTGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTT-CATCTTGAG
* * * * ** *
94474423 GCCGATGCATGTCCCAAACATGTCTTACATTAGCACTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC-TTCATCTTGAG
* ** *
94474469 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TCATCTTGAG
94474517 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT
94474552 CACACAAATG
Statistics
Matches: 144, Mismatches: 23, Indels: 16
0.79 0.13 0.09
Matches are distributed among these distances:
44 10 0.07
45 15 0.10
46 66 0.46
47 31 0.22
48 22 0.15
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTCATCTTGAG
Found at i:94474524 original size:94 final size:92
Alignment explanation
Indices: 94474377--94474550 Score: 242
Period size: 94 Copynumber: 1.9 Consensus size: 92
94474367 AGATTTTATG
* * **
94474377 GCCGATGCATGTCCCAGACATGTCTCACACTGGCTTACATCTTGAGGCCGATGCATGTCCCAAAC
1 GCCGATGCATGTCCCAAACATGTCTCACACTAGCTTACATAATGAGGCCGATGCATGTCCCAAAC
*
94474442 ATGTCTTACATTAGCACTCGTCTCAAT
66 ATGTCTTACACTAGCACTCGTCTCAAT
* *
94474469 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCT-CATAATGTGGCCGATGCATGTCCCA
1 GCCGATG-CATGTCCCAAACAT-GTCTCACACTAGCT-TACATAATGAGGCCGATGCATGTCCCA
*
94474533 GACATGTCTTACACTAGC
63 AACATGTCTTACACTAGC
94474551 TCACACAAAT
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
92 7 0.10
93 13 0.18
94 50 0.70
95 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.26
Consensus pattern (92 bp):
GCCGATGCATGTCCCAAACATGTCTCACACTAGCTTACATAATGAGGCCGATGCATGTCCCAAAC
ATGTCTTACACTAGCACTCGTCTCAAT
Found at i:94486256 original size:27 final size:24
Alignment explanation
Indices: 94486226--94486274 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 24
94486216 CGAGGTAAGT
94486226 TTGTATGTCAAATAAGCTTTAATATAA
1 TTGTAT-TCAAAT--GCTTTAATATAA
*
94486253 TTGTATTTAAATGCTTTAATAT
1 TTGTATTCAAATGCTTTAATAT
94486275 TGTATGAACT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 10 0.48
26 5 0.24
27 6 0.29
ACGTcount: A:0.37, C:0.06, G:0.10, T:0.47
Consensus pattern (24 bp):
TTGTATTCAAATGCTTTAATATAA
Found at i:94491585 original size:47 final size:46
Alignment explanation
Indices: 94491424--94491692 Score: 203
Period size: 47 Copynumber: 5.7 Consensus size: 46
94491414 GAATGAATTT
* * *
94491424 CCGATGCCATGTCCCAGACATGGTCTTATACTGGCTCTCATATATGCG-TG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGC-ATC-TATAT-CGAGG
* * * **
94491474 CTGATGCATGTCCCAGACATGTCTTACACTAGCA-CAAT-TCTTGG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCATCTATATCGAGG
* *
94491518 CCGATGCGTGTCCCAGACATGTCTTACACTGGCTATCTCTATCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGC-ATCTATATCGAGG
* *
94491565 CCGATGCATGTCCCAGACATGTCTTACTCTTGCA-CTCATAAT--ATGG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCATCT-AT-ATCGA-GG
* * * * * *
94491611 CTGACGCATGTCCCAGACATGTCTTACACTAGC-CCT-TGTCTGGATG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCATCTATATC--GAGG
94491657 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCA
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCA
94491693 CACAAATCAC
Statistics
Matches: 177, Mismatches: 27, Indels: 31
0.75 0.11 0.13
Matches are distributed among these distances:
43 2 0.01
44 33 0.19
45 6 0.03
46 43 0.24
47 51 0.29
48 23 0.13
49 14 0.08
50 5 0.03
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (46 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCATCTATATCGAGG
Found at i:94491630 original size:93 final size:91
Alignment explanation
Indices: 94491431--94491694 Score: 280
Period size: 93 Copynumber: 2.8 Consensus size: 91
94491421 TTTCCGATGC
* *
94491431 CATGTCCCAGACATGGTCTTATACTGGCTCTCATATATGCG-TGCTGATGCATGTCCCAGACATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTCTC-TATAT-CGATGCCGATGCATGTCCCAGACATG
** *
94491495 TCTTACACTAGCACAATTCTTGGCCGATG
63 TCTTACACTAGCACAATAATTGGCCGACG
* * * *
94491524 CGTGTCCCAGACATGTCTTACACTGGCTATCTCTATCGAGGCCGATGCATGTCCCAGACATGTCT
1 CATGTCCCAGACATGTCTTACACTGGCTCTCTATATCGATGCCGATGCATGTCCCAGACATGTCT
* * * *
94491589 TACTCTTGCACTCATAATATGGCTGACG
66 TACACTAGCAC-AATAAT-TGGCCGACG
* * * * *
94491617 CATGTCCCAGACATGTCTTACACTAGCCCT-TGTCTGGATGCCGATGCCATGTCCCAGACATGGT
1 CATGTCCCAGACATGTCTTACACTGGCTCTCTATATCGATGCCGATG-CATGTCCCAGACAT-GT
*
94491681 CTTACACTGGCACA
64 CTTACACTAGCACA
94491695 CAAATCACCC
Statistics
Matches: 142, Mismatches: 24, Indels: 10
0.81 0.14 0.06
Matches are distributed among these distances:
90 2 0.01
91 37 0.26
92 30 0.21
93 60 0.42
94 13 0.09
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.28
Consensus pattern (91 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCTATATCGATGCCGATGCATGTCCCAGACATGTCT
TACACTAGCACAATAATTGGCCGACG
Found at i:94499893 original size:12 final size:12
Alignment explanation
Indices: 94499876--94499901 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
94499866 CTAAAGATGT
94499876 GAAAATCATCAA
1 GAAAATCATCAA
94499888 GAAAATCATCAA
1 GAAAATCATCAA
94499900 GA
1 GA
94499902 TCACTTACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.15, G:0.12, T:0.15
Consensus pattern (12 bp):
GAAAATCATCAA
Found at i:94504886 original size:22 final size:23
Alignment explanation
Indices: 94504861--94504904 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
94504851 TGTTTACTCA
94504861 TAATATAATT-TATTTA-ATTTAC
1 TAAT-TAATTCTATTTACATTTAC
94504883 TAATTAATTCTATTTACATTTA
1 TAATTAATTCTATTTACATTTA
94504905 GGTTAACTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 5 0.25
22 10 0.50
23 5 0.25
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.55
Consensus pattern (23 bp):
TAATTAATTCTATTTACATTTAC
Found at i:94507819 original size:49 final size:47
Alignment explanation
Indices: 94507648--94507819 Score: 159
Period size: 49 Copynumber: 3.6 Consensus size: 47
94507638 GATGCCGACA
* *
94507648 CCATGTCCCAAACATGGTCTTACACTGGCTAGCAC-ATCAAAGTCGATG
1 CCATGTCCCAAACA-GGTCTTACACTGGCTATCACTATC-AGGTCGATG
* * ** * *
94507696 CCATGTCCTAGACAGGTCTTACACTAACTTTCAAATATCGAGG-CTGATG
1 CCATGTCCCAAACAGGTCTTACACTGGCTATC-ACTATC-AGGTC-GATG
* * *
94507745 CCGTGTCCCAAACAAGTCTTACACTGGCTCTCATCTATCAGTGTCGATG
1 CCATGTCCCAAACAGGTCTTACACTGGCTATCA-CTATCAG-GTCGATG
*
94507794 CCATGTCCCAGACAGGTCTTACACTG
1 CCATGTCCCAAACAGGTCTTACACTG
94507820 ACACGCAACA
Statistics
Matches: 98, Mismatches: 20, Indels: 11
0.76 0.16 0.09
Matches are distributed among these distances:
47 14 0.14
48 17 0.17
49 66 0.67
50 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (47 bp):
CCATGTCCCAAACAGGTCTTACACTGGCTATCACTATCAGGTCGATG
Found at i:94507967 original size:46 final size:46
Alignment explanation
Indices: 94507880--94507967 Score: 131
Period size: 46 Copynumber: 1.9 Consensus size: 46
94507870 ATATCTCGAG
* * *
94507880 GCCAATGCATCTCCTAGACATGTCTTACACTAGCTCTCATATTAAT
1 GCCAATGCATCTCCCAGACATGTCTTACACTAGCACACATATTAAT
* *
94507926 GCCAATGCATGTCCCAGGCATGTCTTACACTAGCACACATAT
1 GCCAATGCATCTCCCAGACATGTCTTACACTAGCACACATAT
94507968 CACCCAATGT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.28
Consensus pattern (46 bp):
GCCAATGCATCTCCCAGACATGTCTTACACTAGCACACATATTAAT
Found at i:94513675 original size:18 final size:18
Alignment explanation
Indices: 94513652--94513687 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
94513642 TTCCTGGGTG
94513652 GTAGTCGATTATCAACTC
1 GTAGTCGATTATCAACTC
**
94513670 GTAGTCTTTTATCAACTC
1 GTAGTCGATTATCAACTC
94513688 CAACCATTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (18 bp):
GTAGTCGATTATCAACTC
Found at i:94519881 original size:68 final size:67
Alignment explanation
Indices: 94519809--94519958 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
94519799 CATCATGTGT
* * * *
94519809 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
94519871 ATGTAG
62 ATGTAG
** * *
94519877 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
94519942 AG
66 AG
94519944 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
94519959 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:94519914 original size:64 final size:64
Alignment explanation
Indices: 94519833--94520016 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
94519823 AGACATTATG
* *
94519833 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
94519897 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
94519962 AA
63 AA
* * * *
94519964 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
94520017 CAAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:94521978 original size:49 final size:49
Alignment explanation
Indices: 94521883--94522014 Score: 158
Period size: 49 Copynumber: 2.7 Consensus size: 49
94521873 GCACATCAAA
* * *
94521883 GTCGATGCCATGTCCTAGATAGGTCTTACACCGACTTTCATATATCGAC
1 GTCGATGCCATGTCCCAGATAGGTCTTACACTGACTCTCATATATCGAC
* * * **
94521932 G-CTGATGCCGTGTCCCAGATAGGTCTTACACTGGCTCTCATCTATCGGT
1 GTC-GATGCCATGTCCCAGATAGGTCTTACACTGACTCTCATATATCGAC
* *
94521981 GTCGATGCCATGTTCCAGACAGGTCTTACACTGA
1 GTCGATGCCATGTCCCAGATAGGTCTTACACTGA
94522015 GACACAACAA
Statistics
Matches: 69, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
48 1 0.01
49 67 0.97
50 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.22, T:0.30
Consensus pattern (49 bp):
GTCGATGCCATGTCCCAGATAGGTCTTACACTGACTCTCATATATCGAC
Found at i:94522090 original size:48 final size:48
Alignment explanation
Indices: 94522033--94522156 Score: 194
Period size: 48 Copynumber: 2.6 Consensus size: 48
94522023 AAGCTGACGC
* *
94522033 CATGTCCTAGACAAGTCTTACACTAGCTTGTATATCTCGAGGCTGATG
1 CATGTCCTAGACATGTCTTACACTAGCTTGTATATCTCGAGGCTAATG
* *
94522081 CATGTCCTAGACATGTCTTACACTGGCTTGTATATCTTGAGGCTAATG
1 CATGTCCTAGACATGTCTTACACTAGCTTGTATATCTCGAGGCTAATG
* *
94522129 CATGTCCCAAACATGTCTTACACTAGCT
1 CATGTCCTAGACATGTCTTACACTAGCT
94522157 ACCAACATGT
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 69 1.00
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (48 bp):
CATGTCCTAGACATGTCTTACACTAGCTTGTATATCTCGAGGCTAATG
Found at i:94523497 original size:10 final size:11
Alignment explanation
Indices: 94523466--94523498 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
94523456 AGTTATAACT
94523466 AAAAGA-AAAA
1 AAAAGAGAAAA
94523476 AAAAGAGAAAA
1 AAAAGAGAAAA
*
94523487 AAAGGAGAAAA
1 AAAAGAGAAAA
94523498 A
1 A
94523499 TAGGTGGTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 6 0.29
11 15 0.71
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (11 bp):
AAAAGAGAAAA
Found at i:94527647 original size:47 final size:47
Alignment explanation
Indices: 94527584--94528107 Score: 803
Period size: 47 Copynumber: 11.1 Consensus size: 47
94527574 CCCTTCGGGA
* * *
94527584 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
94527631 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCAGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
94527678 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
94527725 CTTATCTC--ATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
94527770 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
94527817 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
94527864 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
94527913 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATT-GGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
94527959 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATT-GGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
94528005 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
94528054 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGG-
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
94528102 CTTATC
1 CTTATC
94528108 TCAATACTAT
Statistics
Matches: 453, Mismatches: 15, Indels: 17
0.93 0.03 0.04
Matches are distributed among these distances:
44 1 0.00
45 42 0.09
46 55 0.12
47 220 0.49
48 41 0.09
49 93 0.21
50 1 0.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:94527709 original size:25 final size:25
Alignment explanation
Indices: 94527634--94527712 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
94527624 ATTCGGCCTT
94527634 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * *
94527659 ATCACAT-T-GGC-CATTCAGCCTT-
1 ATCACATATATACACTTTCA-CATTC
94527681 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
94527706 ATCACAT
1 ATCACAT
94527713 TGGCCATTCG
Statistics
Matches: 41, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 12 0.29
23 5 0.12
24 5 0.12
25 19 0.46
ACGTcount: A:0.33, C:0.29, G:0.04, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:94527845 original size:139 final size:142
Alignment explanation
Indices: 94527595--94528107 Score: 783
Period size: 139 Copynumber: 3.6 Consensus size: 142
94527585 TTATCACATT
* * *
94527595 TATACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCA
1 TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
*
94527660 TCACATTGGCCATTCAGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
66 TCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
94527725 CTTAT-C-T-CA
131 CTTATACATATA
*
94527734 TATACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACA-TGTTCACATT
1 TATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACACACT-TTCACATT
* *
94527797 CATCACATTGGCCATTCGGCCTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTC
64 CATCACATTGGCCATTCGGCCTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTC
94527861 GGCCTTATCACATATA
128 GGCCTTAT-ACATATA
* *
94527877 TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATGTATACACTTTCACATTCA
1 TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
*
94527942 TCACATCGGCCATT-GGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATT-GGC
66 TCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
94528005 CTTATCACATATA
131 CTTAT-ACATATA
* *
94528018 TATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATT
1 TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATACACACTTTCACATT
94528083 CATCACATTGGCCATTCGG-CTTATC
64 CATCACATTGGCCATTCGGCCTTATC
94528108 TCAATACTAT
Statistics
Matches: 344, Mismatches: 17, Indels: 22
0.90 0.04 0.06
Matches are distributed among these distances:
138 3 0.01
139 122 0.35
141 60 0.17
142 43 0.12
143 112 0.33
144 4 0.01
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (142 bp):
TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
TCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
CTTATACATATA
Found at i:94530906 original size:39 final size:39
Alignment explanation
Indices: 94530862--94531130 Score: 389
Period size: 39 Copynumber: 6.9 Consensus size: 39
94530852 CGAATACACG
* * * *
94530862 TCACCAGCATGATTGCTCTTCGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATACA
* * * ** * *
94530901 ACACCAGCACGAATGCTCTTCGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATACA
*
94530940 TCACTAGCACGAATGCTCTTCGGAACTTAG-CCGGATACA
1 TCACTAGCATGAATGCTCTTCGG-ACTTAGCCCGGATACA
94530979 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGG-TACA
1 TCACTAGCATGAATGCTCTTC-GGACTTAGCCCGGATACA
94531018 TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATACA
94531057 TCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGG-ACTTAGCCCGGATACA
94531097 TCACTAGCATGAATGCTCTTCGGACTTAGCCCGG
1 TCACTAGCATGAATGCTCTTCGGACTTAGCCCGG
94531131 TTTAGTAACT
Statistics
Matches: 211, Mismatches: 14, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
38 13 0.06
39 149 0.71
40 49 0.23
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATACA
Found at i:94531156 original size:78 final size:79
Alignment explanation
Indices: 94530862--94531172 Score: 373
Period size: 78 Copynumber: 4.0 Consensus size: 79
94530852 CGAATACACG
* * * * *
94530862 TCACCAGCATGATTGCTCTTCGGACCTAGCCCGGATATA-ACACCAGCACGAATGCTCTTCGGG-
1 TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATACATA-ACTAGCACGAATGCTCTTCGGGA
* * *
94530925 TTTAGCACGGATATA
65 CTTAGCCCGGATACA
* * *
94530940 TCACTAGCACGAATGCTCTTCGGAACTTAG-CCGGATACATCACTAGCATGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTCGG-ACTTAGCCCGGATACATAACTAGCACGAATGCTCTTCGGGA
94531004 CTTAGCCCGG-TACA
65 CTTAGCCCGGATACA
* * *
94531018 TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGAAC
1 TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATACATAACTAGCACGAATGCTCTTCGGGAC
94531083 TTAGCCCGGATACA
66 TTAGCCCGGATACA
* * * *
94531097 TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGTTTA-GTAACTCGCACAAATGC-CTTCGGGA
1 TCACTAGCATGAATGCTCTTCGGACTTAGCCCGG-ATACATAACTAGCACGAATGCTCTTCGGGA
*
94531160 CTTAAACCCGGAT
65 CTT-AGCCCGGAT
94531173 TTAGTAATCA
Statistics
Matches: 205, Mismatches: 21, Indels: 13
0.86 0.09 0.05
Matches are distributed among these distances:
77 6 0.03
78 126 0.61
79 71 0.35
80 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATACATAACTAGCACGAATGCTCTTCGGGAC
TTAGCCCGGATACA
Found at i:94531156 original size:117 final size:116
Alignment explanation
Indices: 94530862--94531172 Score: 401
Period size: 117 Copynumber: 2.6 Consensus size: 116
94530852 CGAATACACG
* * * * **
94530862 TCACCAGCATGATTGCTCTTCGGACCTAGCCCGG-ATATAACACCAGCACGAATGCTCTTCGGGT
1 TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGTATATAAC-TC-GCACGAATGCTCTTCGGAC
* *
94530926 TTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCGGATACA
64 TTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCGGATACA
* * * *
94530979 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGTACATCACTAGCATGAATGCTCTTCGGACT
1 TCACTAGCATGAATGCTCTTC-GGACTTAGCCCGGTATATAACTCGCACGAATGCTCTTCGGACT
*
94531044 TAGCCCGGATACATCACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
65 TAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAG-CCGGATACA
* *
94531097 TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGTTTAGTAACTCGCACAAATGC-CTTCGGGAC
1 TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGTATA-TAACTCGCACGAATGCTCTTC-GGAC
*
94531161 TTAAACCCGGAT
64 TT-AGCCCGGAT
94531173 TTAGTAATCA
Statistics
Matches: 168, Mismatches: 20, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
117 95 0.57
118 60 0.36
119 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (116 bp):
TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGTATATAACTCGCACGAATGCTCTTCGGACTT
AGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCGGATACA
Found at i:94531161 original size:39 final size:36
Alignment explanation
Indices: 94531108--94531206 Score: 114
Period size: 37 Copynumber: 2.7 Consensus size: 36
94531098 CACTAGCATG
94531108 AATGCTCTTC-GGACTTAGCCCGG-TTTAGTAACTCGCAC
1 AATGC-CTTCGGGACTTAGCCCGGATTTAGTAA-T--CAC
*
94531146 AAATGCCTTCGGGACTTAAACCCGGATTTAGTAATCAC
1 -AATGCCTTCGGGACTT-AGCCCGGATTTAGTAATCAC
94531184 AATGCCTTCGGG-CTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
94531207 CATCATTCGA
Statistics
Matches: 55, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
35 7 0.13
36 3 0.05
37 12 0.22
38 7 0.13
39 11 0.20
40 7 0.13
41 8 0.15
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (36 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAATCAC
Found at i:94533612 original size:47 final size:47
Alignment explanation
Indices: 94533437--94533897 Score: 613
Period size: 45 Copynumber: 10.1 Consensus size: 47
94533427 GCCCTTGGGA
* * *
94533437 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGG-
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
94533483 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
94533530 CTTATCAC--ATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
94533575 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
94533622 CTTATCAC--A-ATACACTGTTCACA-T--TCACATTGGCCATTCGG-
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
94533663 CTTATCACATATATATCATTTTCACATTCATCACATTGGCCATTCGG-
1 CTTATCACATATATA-CACTTTCACATTCATCACATTGGCCATTCGGC
*
94533710 CTTATCACA-ATATACACTTTCACATTCAT-ACATCGGCCATT-GGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
94533754 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
94533801 CTTATCGCATATATAACACTTT--CATTCATCACATTGG-CATTAGG-
1 CTTATCACATATAT-ACACTTTCACATTCATCACATTGGCCATTCGGC
94533845 CTTATC-CAATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC-ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
94533892 CTTATC
1 CTTATC
94533898 TATATACTAT
Statistics
Matches: 378, Mismatches: 15, Indels: 43
0.87 0.03 0.10
Matches are distributed among these distances:
41 8 0.02
42 17 0.04
43 11 0.03
44 47 0.12
45 110 0.29
46 80 0.21
47 98 0.26
48 7 0.02
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:94533827 original size:91 final size:92
Alignment explanation
Indices: 94533459--94533897 Score: 570
Period size: 91 Copynumber: 4.8 Consensus size: 92
94533449 ATACACTTCC
*
94533459 ACATCCATCACATTGGCCATTCGGCTTATCACATATATACACTTTCACATTCATCACATTGGCCA
1 ACATTCATCACATTGGCCATTCGGCTTATCACATATATACACTTTCACATTCATCACATTGGCCA
*
94533524 TTCGGCCTTAT-CACATACACA-TGTT
66 TTCGGCCTTATCCACATATACACTGTT
* *
94533549 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCA-TGTTCACATTCATCACATTGG
1 -ACATTCATCACATTGGCCATTCGG-CTTATCACATATATACACT-TTCACATTCATCACATTGG
94533613 CCATTCGGCCTTAT-CACA-ATACACTGTT
63 CCATTCGGCCTTATCCACATATACACTGTT
*
94533641 -CA--CATTCACATTGGCCATTCGGCTTATCACATATATATCATTTTCACATTCATCACATTGGC
1 ACATTCA-TCACATTGGCCATTCGGCTTATCACATATATA-CACTTTCACATTCATCACATTGGC
94533703 CATTCGG-CTTAT-CACAATATACACT-TT
64 CATTCGGCCTTATCCAC-ATATACACTGTT
* *
94533730 CACATTCAT-ACATCGGCCATT-GGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
1 -ACATTCATCACATTGGCCATTCGG-CTTATCACATATATACACTTTCACATTCATCACATTGGC
* *
94533793 CATTAGGCCTTATCGCATATATAACACT-TT
64 CATTCGGCCTTATC-CACATAT-ACACTGTT
*
94533823 -CATTCATCACATTGG-CATTAGGCTTATC-CAATATATACACTTTCACATTCATCACATTGGCC
1 ACATTCATCACATTGGCCATTCGGCTTATCAC-ATATATACACTTTCACATTCATCACATTGGCC
94533885 ATTCGGCCTTATC
65 ATTCGGCCTTATC
94533898 TATATACTAT
Statistics
Matches: 314, Mismatches: 14, Indels: 40
0.85 0.04 0.11
Matches are distributed among these distances:
88 23 0.07
89 49 0.16
90 41 0.13
91 121 0.39
92 69 0.22
93 11 0.04
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (92 bp):
ACATTCATCACATTGGCCATTCGGCTTATCACATATATACACTTTCACATTCATCACATTGGCCA
TTCGGCCTTATCCACATATACACTGTT
Found at i:94533942 original size:136 final size:136
Alignment explanation
Indices: 94533448--94533943 Score: 449
Period size: 136 Copynumber: 3.6 Consensus size: 136
94533438 TTATCACATT
* *
94533448 TATACACTTCCACATCCATCACATTGGCCATTCGG-CTTATCACATATATACACT-TTCACATTC
1 TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAT-CACTGTTCAC-TT-
* ** *
94533511 ATCACATTGGCCATTCGGCCTTATCAC--ATA-CACA-TGTTCACATTCATCACATTGGCCATTC
63 -TCACATTGGCCAATC-TACTTATCACATATATAACACT-TT-ACATTCATCACATTGGCCATTC
94533572 GGCCTTATCTC-ATA
124 GG-CTTATC-CAATA
* *
94533586 TATGCA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA-ATA-CACTGTTCACATTC
1 TATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATCACTGTTCACTTTC
* ** * *
94533648 ACATTGGCCATTCGGCTTATCACATATATATCATTTTCACATTCATCACATTGGCCATTCGGCTT
65 ACATTGGCCAATCTACTTATCACATATATAACACTTT-ACATTCATCACATTGGCCATTCGGCTT
94533713 AT-CACA-A
129 ATCCA-ATA
*
94533720 TATACACTTTCACATTCAT-ACATCGGCCATT-GGCCTTATCACATATATACACT-TTCACATTC
1 TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAT-CACTGTTCAC-TT-
* * *
94533782 ATCACATCGGCC-AT-TAGGCCTTATCGCATATATAACACTTT-CATTCATCACATTGG-CATTA
63 -TCACATTGGCCAATCTA---CTTATCACATATATAACACTTTACATTCATCACATTGGCCATTC
94533843 GGCTTATCCAATA
124 GGCTTATCCAATA
* *
94533856 TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCTATATACTATCA-TGTACACTTT
1 TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATC-ACATA-TATCACTGTTCACTTT
**
94533920 GTC-TTGGCCGAATCTACATTATCA
64 CACATTGGCC-AATCTAC-TTATCA
94533944 TTTCCCAATG
Statistics
Matches: 303, Mismatches: 25, Indels: 62
0.78 0.06 0.16
Matches are distributed among these distances:
132 12 0.04
133 24 0.08
134 37 0.12
135 33 0.11
136 79 0.26
137 30 0.10
138 66 0.22
139 19 0.06
140 3 0.01
ACGTcount: A:0.27, C:0.28, G:0.10, T:0.34
Consensus pattern (136 bp):
TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATCACTGTTCACTTTCA
CATTGGCCAATCTACTTATCACATATATAACACTTTACATTCATCACATTGGCCATTCGGCTTAT
CCAATA
Found at i:94535367 original size:57 final size:57
Alignment explanation
Indices: 94535293--94535418 Score: 227
Period size: 57 Copynumber: 2.2 Consensus size: 57
94535283 TTTCTTATTA
94535293 GTTTATTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACAT
1 GTTT-TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACAT
*
94535351 GTTTTTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACAT
1 GTTTTTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACAT
94535408 G-TTTTGCCCAT
1 GTTTTTGCCCAT
94535419 CATCCCTTGC
Statistics
Matches: 67, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
56 10 0.15
57 53 0.79
58 4 0.06
ACGTcount: A:0.22, C:0.22, G:0.10, T:0.46
Consensus pattern (57 bp):
GTTTTTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACAT
Found at i:94604933 original size:101 final size:98
Alignment explanation
Indices: 94604798--94604992 Score: 363
Period size: 101 Copynumber: 2.0 Consensus size: 98
94604788 ATTCCTACTA
94604798 TTTTTAGTGATTTTCCAAATCTACATCACTGCTGCTGTCAGCATCTGCCTTTAAGGTAGACTTTA
1 TTTTTAGTGATTTTCCAAATCTACATCACTGCTGCTGTCAGCATCTGCCTTTAAGGTAGACTTTA
94604863 CCTATTTCATAGTTTCCATGATTCAACTAGCCCTAT
66 -CTATTT-A-AGTTTCCATGATTCAACTAGCCCTAT
94604899 TTTTTAGTGATTTTCCAAATCTACATCACTGCTGCTGTCAGCATCTGCCTTTAAGGTAGACTTTA
1 TTTTTAGTGATTTTCCAAATCTACATCACTGCTGCTGTCAGCATCTGCCTTTAAGGTAGACTTTA
94604964 CTATTTAAGTTTCCATGATTCAACTAGCC
66 CTATTTAAGTTTCCATGATTCAACTAGCC
94604993 TTTTAGGATA
Statistics
Matches: 94, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
98 22 0.23
99 1 0.01
100 6 0.06
101 65 0.69
ACGTcount: A:0.24, C:0.23, G:0.13, T:0.39
Consensus pattern (98 bp):
TTTTTAGTGATTTTCCAAATCTACATCACTGCTGCTGTCAGCATCTGCCTTTAAGGTAGACTTTA
CTATTTAAGTTTCCATGATTCAACTAGCCCTAT
Found at i:94605080 original size:21 final size:21
Alignment explanation
Indices: 94605054--94605103 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
94605044 CCTTGTTAAG
94605054 CATAT-CACACCTCTCAATAAC
1 CATATCCACA-CTCTCAATAAC
*
94605075 CATATCCGCACTCTCAATAAC
1 CATATCCACACTCTCAATAAC
94605096 CATATCCA
1 CATATCCA
94605104 TCAAACATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 23 0.88
22 3 0.12
ACGTcount: A:0.36, C:0.38, G:0.02, T:0.24
Consensus pattern (21 bp):
CATATCCACACTCTCAATAAC
Found at i:94605712 original size:39 final size:39
Alignment explanation
Indices: 94605664--94605827 Score: 228
Period size: 39 Copynumber: 4.2 Consensus size: 39
94605654 CTACTCGTTC
* *
94605664 AATGCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACA
1 AATGCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACA
94605703 AATGCTTCGGGACTTAACCC-GATTTAGTAACTCGCACA
1 AATGCTTCGGGACTTAACCCGGATTTAGTAACTCGCACA
94605741 AATGCTTCGGGACTTAACCCGGATTTAGTAACTCGC-CA
1 AATGCTTCGGGACTTAACCCGGATTTAGTAACTCGCACA
** *
94605779 AATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTACA
1 AATG-CTTCGGGA-CTTAACCCGGATTTAGTAACTCGCACA
94605819 AATGCTTCG
1 AATGCTTCG
94605828 ATCTTAGTCG
Statistics
Matches: 114, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
38 44 0.39
39 64 0.56
40 6 0.05
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (39 bp):
AATGCTTCGGGACTTAACCCGGATTTAGTAACTCGCACA
Found at i:94605762 original size:77 final size:78
Alignment explanation
Indices: 94605664--94605827 Score: 228
Period size: 77 Copynumber: 2.1 Consensus size: 78
94605654 CTACTCGTTC
*
94605664 AATGCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATG-CTTCGGGA-CTTA-ACCCGA
1 AATGCTTCGGGACATAACCCGGATT-TAGTAACTCGC-CAAATGCCTTC-GGATCTTAGACCCGA
94605725 TTTAGTAACTCGCACA
63 TTTAGTAACTCGCACA
* * *
94605741 AATGCTTCGGGACTTAACCCGGATTTAGTAACTCGCCAAATGCCTTCGGATCTTAGTCCGGATTT
1 AATGCTTCGGGACATAACCCGGATTTAGTAACTCGCCAAATGCCTTCGGATCTTAGACCCGATTT
*
94605806 AGTAACTCGTACA
66 AGTAACTCGCACA
94605819 AATGCTTCG
1 AATGCTTCG
94605828 ATCTTAGTCG
Statistics
Matches: 78, Mismatches: 5, Indels: 7
0.87 0.06 0.08
Matches are distributed among these distances:
76 9 0.12
77 39 0.50
78 30 0.38
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (78 bp):
AATGCTTCGGGACATAACCCGGATTTAGTAACTCGCCAAATGCCTTCGGATCTTAGACCCGATTT
AGTAACTCGCACA
Found at i:94605857 original size:37 final size:38
Alignment explanation
Indices: 94605682--94605863 Score: 133
Period size: 38 Copynumber: 4.8 Consensus size: 38
94605672 GGGACATAGC
* * *
94605682 CCGGTTATAGTAACTCGCACAAATGCTTCGGGA-CTTA-A
1 CCGGATATAGTAACTAGCACAAATGCTTC--GATCTTAGT
* * * **
94605720 CCCGATTTAGTAACTCGCACAAATGCTTCGGGA-CTTAAC
1 CCGGATATAGTAACTAGCACAAATGCTTC--GATCTTAGT
* *
94605759 CCGGATTTAGTAACTCGC-CAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTAACTAGCACAAATG-CTTC-GATCTTAGT
* * *
94605798 CCGGATTTAGTAACTCGTACAAATGCTTCGATCTTAGT
1 CCGGATATAGTAACTAGCACAAATGCTTCGATCTTAGT
* *
94605836 -CGGATATGGTCACTAGCACAAA-GCTTCG
1 CCGGATATAGTAACTAGCACAAATGCTTCG
94605864 GGACTTAGCC
Statistics
Matches: 127, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
36 6 0.05
37 17 0.13
38 52 0.41
39 46 0.36
40 6 0.05
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (38 bp):
CCGGATATAGTAACTAGCACAAATGCTTCGATCTTAGT
Found at i:94611486 original size:40 final size:39
Alignment explanation
Indices: 94611402--94611585 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 39
94611392 TCGAATGATG
* * * *
94611402 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
94611442 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
94611482 TCCGGGCTAAG-CCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
94611520 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
94611561 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
94611586 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
38 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:94619421 original size:40 final size:40
Alignment explanation
Indices: 94619280--94619463 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
94619270 TCGAATGATG
* * * *
94619280 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
94619320 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
94619359 TTCGGGCTAAG-CCCGAAGGCATTGGCGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
94619398 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
94619439 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
94619464 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 22 0.18
39 21 0.17
40 70 0.57
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:94627353 original size:39 final size:40
Alignment explanation
Indices: 94627253--94627437 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
94627243 TCGAATGATG
* * *
94627253 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
94627292 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
94627333 TCTGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
94627372 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
94627411 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
94627438 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:94627459 original size:79 final size:79
Alignment explanation
Indices: 94627306--94627470 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
94627296 GGACTAAGAT
* * **
94627306 CCGAAGGCATTTGTGCGAGTTACTAATTCTGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
94627371 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
94627385 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
94627448 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
94627464 CCGAAGG
1 CCGAAGG
94627471 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:94631755 original size:21 final size:21
Alignment explanation
Indices: 94631725--94631764 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
94631715 GACTGCCTTT
* * *
94631725 GATGTTGTGACACATCCATTA
1 GATGTCGTGAAACACCCATTA
94631746 GATGTCGTGAAACACCCAT
1 GATGTCGTGAAACACCCAT
94631765 GAAGCTACCC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28
Consensus pattern (21 bp):
GATGTCGTGAAACACCCATTA
Found at i:94642013 original size:47 final size:46
Alignment explanation
Indices: 94641883--94642038 Score: 163
Period size: 47 Copynumber: 3.3 Consensus size: 46
94641873 TGCACACTTT
* * *
94641883 TCACAATTGGCCATTCGGCCTTGTAACATAT-TCACTTACACATAT-A
1 TCAC-ATTGGCCATTCGGCCTTATCACATATAACACTTACACAT-TCA
** * * * *
94641929 TCACATTAACCATCCGGCCTTATCACATGTATGCACTTCCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATA-ACACTTACACATTCA
*
94641976 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATA-ACACTTACACATTCA
*
94642023 TCACGTTGGCCATTCG
1 TCACATTGGCCATTCG
94642039 ATCTTAAGCC
Statistics
Matches: 91, Mismatches: 16, Indels: 5
0.81 0.14 0.04
Matches are distributed among these distances:
45 20 0.22
46 5 0.05
47 66 0.73
ACGTcount: A:0.27, C:0.31, G:0.11, T:0.31
Consensus pattern (46 bp):
TCACATTGGCCATTCGGCCTTATCACATATAACACTTACACATTCA
Found at i:94645900 original size:40 final size:40
Alignment explanation
Indices: 94645854--94646329 Score: 695
Period size: 40 Copynumber: 11.9 Consensus size: 40
94645844 GAATACACAT
* *
94645854 CACCAGCATGAATGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
94645894 CACCAGCACGAATGCTCTTCGGGACTTAGCCCTGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
94645934 CTCCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
94645974 CACCAGCTCGAATGCTCTTCGGGACTTAGCCCGGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
94646014 CACTAGCACGAATGCTCTTCGGGACTTAACCCTGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
94646054 CTCCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
94646094 CACCAGCTCGAATGCTCTTCGGGACTTAGCCTGGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
94646134 CACTAGCACGAATGCTCTTC-GGACTTAGCCCGGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
94646173 CACTAGCACGAATGCTCTTC-GGACTTAACCCTGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
94646212 CTCCAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * *
94646252 CACCAGCTCGAATGCTCTTCGGGACTTAGCCTGGATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* *
94646292 CACTAGCACGAATGCTCTTCGGGACTTAGCCCAGATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
94646330 GTAACTCTCA
Statistics
Matches: 390, Mismatches: 45, Indels: 2
0.89 0.10 0.00
Matches are distributed among these distances:
39 72 0.18
40 318 0.82
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:94648176 original size:39 final size:40
Alignment explanation
Indices: 94648094--94648349 Score: 333
Period size: 40 Copynumber: 6.5 Consensus size: 40
94648084 TGGATGATAA
* * *
94648094 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
94648134 CCGGGCTAAGTCCCGAA-GCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
94648173 CCGGGCTAAGTCCTGAA-GCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
94648212 CCGGGCTATGTCCTGAAGGCATTTGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
94648252 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
94648292 CTGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
94648332 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
94648350 TACTTGGCTT
Statistics
Matches: 195, Mismatches: 18, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
38 1 0.01
39 86 0.44
40 108 0.55
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:94657126 original size:40 final size:39
Alignment explanation
Indices: 94657068--94657146 Score: 104
Period size: 40 Copynumber: 2.0 Consensus size: 39
94657058 ACTTAATTCA
* * * *
94657068 CCAGCATTAAGCCTGCGGGACTTTAAACCCGGATACAATC
1 CCAGCATGAAGCCAGCGGGACTCT-AACCCAGATACAATC
*
94657108 CCAGCATGAAGCCAGCGGGTCTCTAACCCAGATACAATC
1 CCAGCATGAAGCCAGCGGGACTCTAACCCAGATACAATC
94657147 TCCGCACAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
39 14 0.41
40 20 0.59
ACGTcount: A:0.30, C:0.32, G:0.20, T:0.18
Consensus pattern (39 bp):
CCAGCATGAAGCCAGCGGGACTCTAACCCAGATACAATC
Found at i:94660901 original size:32 final size:32
Alignment explanation
Indices: 94660860--94660925 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
94660850 TGAGTAAGTC
*
94660860 ATATTCAATCTCAGTCAAAGAAATCTAAAGAA
1 ATATTCAATCTCAGTCAAAGAAACCTAAAGAA
*
94660892 ATATTCAATCTCAGTCAAAGAAACCTAGAGAA
1 ATATTCAATCTCAGTCAAAGAAACCTAAAGAA
94660924 AT
1 AT
94660926 GAATTCTCAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.48, C:0.17, G:0.11, T:0.24
Consensus pattern (32 bp):
ATATTCAATCTCAGTCAAAGAAACCTAAAGAA
Found at i:94678460 original size:31 final size:31
Alignment explanation
Indices: 94678422--94678485 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
94678412 CCAACGCGAC
94678422 AAGGAAAGACCACTCAGATGAACAATTTGGT
1 AAGGAAAGACCACTCAGATGAACAATTTGGT
*
94678453 AAGGAAAGACCGCTCAGATGAACAATTTGGT
1 AAGGAAAGACCACTCAGATGAACAATTTGGT
94678484 AA
1 AA
94678486 ATTCCTTAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.42, C:0.16, G:0.23, T:0.19
Consensus pattern (31 bp):
AAGGAAAGACCACTCAGATGAACAATTTGGT
Found at i:94693699 original size:610 final size:611
Alignment explanation
Indices: 94691165--94698526 Score: 11799
Period size: 611 Copynumber: 12.0 Consensus size: 611
94691155 TTCAATTGGC
* *
94691165 TGATAAAACCATTAGATTTCTTAGAGGTATCATTGAAGATGTTCTTGCTAAGATCGATAAATTTA
1 TGATAAAACCATTAGATTTCCTAGAGGTATCATTGAAGATGTTCTTGTTAAGATCGATAAATTTA
* * *
94691230 TATACCCGGTAGACTTTGTTGTTTTAGACATGGAAGAAGATAGCAAAGCACCTTTGATTTT-AGA
66 TATACCCAGTAGACTTTGTTGTTTTAGACATGGAAGAAGATAGTAACGCACCTTTGATTTTAAGA
* ** * *
94691294 GCCACCCTTTTTAGCGACTGCTAGAACCATTATTGATGTCAACATAGGTGAACTCACACTTCGTG
131 -CGACCCTTTTTAGCGACTGCTAGAACCATTATTGATGTCGGCACAAGTGAACTCACACTTCGTG
*
94691359 TGGGAGATGAAACAATCACCCTTCAAGCTCGTAATTCGAATAACACATCAAAAATTGAAGGTGGT
195 TGGGAGATGAAACAATCACCCTTCAAGCTCGTAATTCGAATAACACATCGAAAATTGAAGGTGGT
* * *
94691424 TGTATAAATCAATCTACTAAAACTGACCATGTGATGCAACCTACTTTGCAGGAAATAAGTTCGAA
260 TGTATAAATCATTCTACTAAAACTGACCATCTGGTGCAACCTACTTTGCAGGAAATAAGTTCGAA
* * *
94691489 AAATCTACACGAGCCATGTTCAGGCAACAACAAAGGACCTATCTATGAAGAACGACGACTACAAA
325 GAACCTACACGAGCCATGTTCAGGCAACAACAAAGGACCTATCTATGAAGAACGACGGCTACAAA
* * * * * *
94691554 TCGAGGAACTAGATGAATGGCGGACACACAAATTGAGAACCCCCTATAAACCGAAA-TCGAGCTA
390 TCGAGGAACTAGATGAATGGCGGACACAGAAATCGAGAACACCCGATAAATCGAAACT-GAGCCA
*
94691618 GGACAAGCTTAATACATCACCAAATCAACTTAAGGTTGGAGACAAAGTACTACTAGATGCAGCAG
454 GGACAAGCTCAATACATCACCAAATCAACTTAAGGTTGGAGACAAAGTACTACTAGATGCAGCAG
94691683 ATCCTTGCATTACCACTTCTGAACCTAATAAAGTAATCCCTCTTACGGTACTCAATATTTTCCCA
519 ATCCTTGCATTACCACTTCTGAACCTAATAAAGTAATCCCTCTTACGGTACTCAATATTTTCCCA
*
94691748 TATGGTACAGTCGAGGTATCTTTGAAGA
584 TATGGTACAGTCGAGGTATCATTGAAGA
*
94691776 TGATAAAACCATTAGATTTCCTAGAAGTATCATTGAAGATGTTCTTGTTAAGATCGATAAATTTA
1 TGATAAAACCATTAGATTTCCTAGAGGTATCATTGAAGATGTTCTTGTTAAGATCGATAAATTTA
* * *
94691841 TATACCCAGTAGACTTTGTTGTTTTAGACATGGAAGAAGATAGTAATGCACCTTTAATTTTAGGA
66 TATACCCAGTAGACTTTGTTGTTTTAGACATGGAAGAAGATAGTAACGCACCTTTGATTTTAAGA
* * **
94691906 CGACCCGTTTTAGCGACTGATAGAACCATTATTGATGTCAACACAAGTGAACTCACACTTCGTGT
131 CGACCCTTTTTAGCGACTGCTAGAACCATTATTGATGTCGGCACAAGTGAACTCACACTTCGTGT
* *
94691971 GGGAGATGAAACAATCACCCTTCAAGCTCGTAATTTGAATAACACATCGAAAATTTAAGGTGGTT
196 GGGAGATGAAACAATCACCCTTCAAGCTCGTAATTCGAATAACACATCGAAAATTGAAGGTGGTT
* * *
94692036 GTATAAATCATTCTACTAAAACTGACCATATGGTGCAACCTCCTTTGCAGGAAATAAGTTCGGAG
261 GTATAAATCATTCTACTAAAACTGACCATCTGGTGCAACCTACTTTGCAGGAAATAAGTTCGAAG
* * *
94692101 AACCTACACGAGCCATGTTCAGGCAACAACAAAGAACCTATCTATGAAGAACGACGGCTATAGAT
326 AACCTACACGAGCCATGTTCAGGCAACAACAAAGGACCTATCTATGAAGAACGACGGCTACAAAT
* * *
94692166 CGAGGAACTAGAT---T-GCAGACACAGAAATCGAGAACACTCGATAAATCGAAACTGAGCAAGG
391 CGAGGAACTAGATGAATGGCGGACACAGAAATCGAGAACACCCGATAAATCGAAACTGAGCCAGG
*
94692227 ACAAGCTCAATACATCACCAAATCAACTTAAGGTTGGAGACAAAGTACTACTAGATGCGGCAGAT
456 ACAAGCTCAATACATCACCAAATCAACTTAAGGTTGGAGACAAAGTACTACTAGATGCAGCAGAT
94692292 CCTTGCATTACCACTTCTGAACCTAATAAAGTAATCCCTCTTACGGTACTCAATATTTTCCCATA
521 CCTTGCATTACCACTTCTGAACCTAATAAAGTAATCCCTCTTACGGTACTCAATATTTTCCCATA
94692357 TGGTACAGTCGAGGTATCATTGAAGA
586 TGGTACAGTCGAGGTATCATTGAAGA
*
94692383 TGATAGAACCATTAGATTTCCTAGAGGTATCATTGAAGATGTTCTTGTTAAGATCGATAAA-TTA
1 TGATAAAACCATTAGATTTCCTAGAGGTATCATTGAAGATGTTCTTGTTAAGATCGATAAATTTA
*
94692447 TATACCCAGTAGACTTTCTTGTTTTAGACATGGAAGAAGATAGTAACGCACCTTTGATTTTAAGA
66 TATACCCAGTAGACTTTGTTGTTTTAGACATGGAAGAAGATAGTAACGCACCTTTGATTTTAAGA
* *
94692512 CGACCCTTTTTAGCGACTGCTAGAACCATTATTGATGTCGCCACAAGTGAACTCACACTTCATGT
131 CGACCCTTTTTAGCGACTGCTAGAACCATTATTGATGTCGGCACAAGTGAACTCACACTTCGTGT
*
94692577 AGGAGATGAAACAATCACCCTTCAAGCTCGTAATTCGAATAACACATCGAAAATTGAAGGTGGTT
196 GGGAGATGAAACAATCACCCTTCAAGCTCGTAATTCGAATAACACATCGAAAATTGAAGGTGGTT
* * *
94692642 GTCTAAATTATTCTACTAAAATTGACCATCTGGTGCAACCTACTTTGCAGGAAATAAGTTCGAAG
261 GTATAAATCATTCTACTAAAACTGACCATCTGGTGCAACCTACTTTGCAGGAAATAAGTTCGAAG
*
94692707 AACCTATACGAGCCATGTTCAGGCAACAACAAAGG-CCTATCTATGAAGAACGACGGCTACAAAT
326 AACCTACACGAGCCATGTTCAGGCAACAACAAAGGACCTATCTATGAAGAACGACGGCTACAAAT
* * * *
94692771 CGAGGAACTAGATAAATGGTGGACACTGAAATCGAGAACACCCGATAAACTAAAAACACTCAATA
391 CGAGGAACTAGATGAATGGCGGACACAGAAATCGAGAACACCCG----A-T---AA-A-TC--GA
* * * * *
94692836 AACCAAAATCGAGCCAAGACGAGTTCAATCCATCACCAAATCAACTTAATGTTGGAGACAAAGTA
444 AA-C----T-GAGCCAGGACAAGCTCAATACATCACCAAATCAACTTAAGGTTGGAGACAAAGTA
94692901 CTACTAGATGCAGCAGATCCTTGCATTACCACTTCTGAACCTAATAAAGTAATCCCTCTTACGGT
503 CTACTAGATGCAGCAGATCCTTGCATTACCACTTCTGAACCTAATAAAGTAATCCCTCTTACGGT
* *
94692966 ACTCAATATTTTCCCATATAGTACAGTCGAGGTATCGTTGAAGA
568 ACTCAATATTTTCCCATATGGTACAGTCGAGGTATCATTGAAGA
94693010 TGATAAAACCATTAGATTTCCTAGAGGTATCATTGAAGATGTTCTTGTTAAGATCGATAAATTTA
1 TGATAAAACCATTAGATTTCCTAGAGGTATCATTGAAGATGTTCTTGTTAAGATCGATAAATTTA
* *
94693075 TATACCCAGTAGACTTTGTTGTTTTAGACATGGAAGAAAAGAGTAACGCACCTTTGATTTTAAGA
66 TATACCCAGTAGACTTTGTTGTTTTAGACATGGAAGAAGATAGTAACGCACCTTTGATTTTAAGA
* *
94693140 CGACCC-TTTTAGCGACTGCTAGAACCATTATTGATGTCAGCACAAGGGAACTCACACTTCGTGT
131 CGACCCTTTTTAGCGACTGCTAGAACCATTATTGATGTCGGCACAAGTGAACTCACACTTCGTGT
* * *
94693204 GGGAGATGAAACAATCACCCTTCAAGCTCGTAATTTGAATAACACATCAAAAATTGAAGGTTGTT
196 GGGAGATGAAACAATCACCCTTCAAGCTCGTAATTCGAATAACACATCGAAAATTGAAGGTGGTT
* * * *
94693269 GTATAAATGATTCTACTAAAACTGACCATGTGGTGTAACCTCCTTTGCAGGAAATAAGTTCGGAA
261 GTATAAATCATTCTACTAAAACTGACCATCTGGTGCAACCTACTTTGCAGGAAATAAGTTC-GAA
*
94693334 -AACCTACACGAGCCATGTTCAGGCAACAACAAAGGACCTATCTATGAAGAACGACGGCTACAGA
325 GAACCTACACGAGCCATGTTCAGGCAACAACAAAGGACCTATCTATGAAGAACGACGGCTACAAA
* * *
94693398 TCGAGGAACTAGATGAATGGCGGACACAAAAATTGAGAACATCCGATAAATCGAAACTGAGCCAG
390 TCGAGGAACTAGATGAATGGCGGACACAGAAATCGAGAACACCCGATAAATCGAAACTGAGCCAG
94693463 GACAAGCTCAATACATCACCAAATCAACTTAAGGTTGGAGACAAAGTACTACTAGATGCAGCAGA
455 GACAAGCTCAATACATCACCAAATCAACTTAAGGTTGGAGACAAAGTACTACTAGATGCAGCAGA
* *
94693528 TCCTTGCATTACCACTTCTGAACCTAATAAAGTAATCCCTCTTATGGTACTCAATATTTTTCCAT
520 TCCTTGCATTACCACTTCTGAACCTAATAAAGTAATCCCTCTTACGGTACTCAATATTTTCCCAT
94693593 ATGGTACAGTCGAGGTATCATTGAAGA
585 ATGGTACAGTCGAGGTATCATTGAAGA
*
94693620 TGATAGAACCATTAGATTTCCTAGAGGTATCATTGAAGATGTTCTTGTTAAGATCGATAAATTTA
1 TGATAAAACCATTAGATTTCCTAGAGGTATCATTGAAGATGTTCTTGTTAAGATCGATAAATTTA
*
94693685 TATACCCAGTAGACTTTGTTGTTTTAGACATGGAAGAAGATAGTAACGCACCTTTGATTTTATGA
66 TATACCCAGTAGACTTTGTTGTTTTAGACATGGAAGAAGATAGTAACGCACCTTTGATTTTAAGA
*
94693750 CGACCCTTTTTAGCGACTGCTAGAACCGTTATTGATGTCGGCACAAGTGAACTCACACTTCGTGT
131 CGACCCTTTTTAGCGACTGCTAGAACCATTATTGATGTCGGCACAAGTGAACTCACACTTCGTGT
*
94693815 GGGAGATGAAACAATCACCCTTCAAGCTCGTAATTCGAATAACACATCGAAAATTGAATGTGGTT
196 GGGAGATGAAACAATCACCCTTCAAGCTCGTAATTCGAATAACACATCGAAAATTGAAGGTGGTT
* * *
94693880 GTATAAATCATTCTACTAAAATTCACAATCTGGTGCAACCTACTTTGCAGGAAATAAGTTCGAAG
261 GTATAAATCATTCTACTAAAACTGACCATCTGGTGCAACCTACTTTGCAGGAAATAAGTTCGAAG
*
94693945 AACCTACACGAGCCATGTTCAGGCAACAACAAAGGACCTATCTATGAAGAACGACGGCTACAGAT
326 AACCTACACGAGCCATGTTCAGGCAACAACAAAGGACCTATCTATGAAGAACGACGGCTACAAAT
* * * *
94694010 CGAGGAACTATATGAATAGCAGACACAGAAATCGAGAACACCCGATAAACTAAAAACACTCAATA
391 CGAGGAACTAGATGAATGGCGGACACAGAAATCGAGAACACCCG----A-T---AA-A-TC--GA
* * * * *
94694075 AACCAAAATCGAGCCAAGACGAGTTCAATCCATCACCAAATCAACTTAATGTTGGAGACAAAGTA
444 AA-C----T-GAGCCAGGACAAGCTCAATACATCACCAAATCAACTTAAGGTTGGAGACAAAGTA
94694140 CTACTAGATGCAGCAGATCCTTGCATTACCACTTCTGAACCT-ATAAAGTAATCCCTCTTACGGT
503 CTACTAGATGCAGCAGATCCTTGCATTACCACTTCTGAACCTAATAAAGTAATCCCTCTTACGGT
* * *
94694204 ACTCAATATTTTCCCATATAGTACAGTCGAAGTATCGTTGAAGA
568 ACTCAATATTTTCCCATATGGTACAGTCGAGGTATCATTGAAGA
* * * *
94694248 TGATAAAACTATTAGATTTCCTAAAGGTATCATTGAAGGTGTTTTTGTTAAGATCGATAAATTTA
1 TGATAAAACCATTAGATTTCCTAGAGGTATCATTGAAGATGTTCTTGTTAAGATCGATAAATTTA
* *
94694313 TATACCCAGTAGACTTTGTTGTTTTAGACATGGAAGAAAAGAGTAACGCACCTTTGATTTTAAGA
66 TATACCCAGTAGACTTTGTTGTTTTAGACATGGAAGAAGATAGTAACGCACCTTTGATTTTAAGA
* * * *
94694378 AGACCC-TTTTAGCGACTGCTAGAACCATTATTGATGTCAGCACAAGGGAACTCACACTACGTGT
131 CGACCCTTTTTAGCGACTGCTAGAACCATTATTGATGTCGGCACAAGTGAACTCACACTTCGTGT
*
94694442 GGGAGATGAAACAATCACCCTTCAAGCTCGTAATTTGAATAACACATC-AAAACTTGAAGGTGGT
196 GGGAGATGAAACAATCACCCTTCAAGCTCGTAATTCGAATAACACATCGAAAA-TTGAAGGTGGT
* * * *
94694506 TGTATAAATGATTCTACTAAAACTGACCATGTGGTGTAACCTCCTTTGCAGGAAATAAGTTCAGA
260 TGTATAAATCATTCTACTAAAACTGACCATCTGGTGCAACCTACTTTGCAGGAAATAAGTTC-GA
*
94694571 A-AACCTACACGAGCCATGTTCAGGCAACAACAAAGGACCTATCTATGAAGAACGACGGCTACAG
324 AGAACCTACACGAGCCATGTTCAGGCAACAACAAAGGACCTATCTATGAAGAACGACGGCTACAA
* * * *
94694635 ATCGAGGAACTAGATGAATGGCGGACACAAAAATCGAGAGCATCCGATAAATCGAAACTGAGCAA
389 ATCGAGGAACTAGATGAATGGCGGACACAGAAATCGAGAACACCCGATAAATCGAAACTGAGCCA
* *
94694700 GGACAAGCTCAATACATCACCAAATCAACTTAAGGTTGGAGACAAAGCACTACTAGATGCAGCAA
454 GGACAAGCTCAATACATCACCAAATCAACTTAAGGTTGGAGACAAAGTACTACTAGATGCAGCAG
* * * *
94694765 ATCCTCGCATTACCACTTCTAAACCTAATAAAGTAATCCCTCTTACGGTACTCAATACTTTCCCG
519 ATCCTTGCATTACCACTTCTGAACCTAATAAAGTAATCCCTCTTACGGTACTCAATATTTTCCCA
94694830 TATGGTACAGTCGAGGTATCATTGAAGA
584 TATGGTACAGTCGAGGTATCATTGAAGA
*
94694858 TGATAAAACCATTAGATTTCCTAGAGGTATCACTGAAGATGTTCTTGTTAAGATCGATAAATTTA
1 TGATAAAACCATTAGATTTCCTAGAGGTATCATTGAAGATGTTCTTGTTAAGATCGATAAATTTA
* * * *
94694923 TATACCCATTAGAATTTGTTGTTTTAGACATGGAAGAAGATAGTAATGCACCTTTGATTTTAGGA
66 TATACCCAGTAGACTTTGTTGTTTTAGACATGGAAGAAGATAGTAACGCACCTTTGATTTTAAGA
* *
94694988 CGACCCTTTTTAGCGACTGCTAGAACCATTATTTATGTCGGTACAAGTGAACTCACACTTCGTGT
131 CGACCCTTTTTAGCGACTGCTAGAACCATTATTGATGTCGGCACAAGTGAACTCACACTTCGTGT
* * *
94695053 GGGAGATAAAACAATCACCCTTCAAGCTCGTAATTTGAATAACATATCGAAAATTGAAGGTGGTT
196 GGGAGATGAAACAATCACCCTTCAAGCTCGTAATTCGAATAACACATCGAAAATTGAAGGTGGTT
**
94695118 GTATAAATCATTCTACTAAAACTGACCATCTAATGCAACCTACTTTGCAGGAAATAAGTTCGAAG
261 GTATAAATCATTCTACTAAAACTGACCATCTGGTGCAACCTACTTTGCAGGAAATAAGTTCGAAG
*
94695183 AACCTACACGAGCCATGTTCAGGCAACAACAAAGGACCCATCTATGAAGAACGACGGCTACAAAT
326 AACCTACACGAGCCATGTTCAGGCAACAACAAAGGACCTATCTATGAAGAACGACGGCTACAAAT
* * * * * *
94695248 TGAGGAACTAGATGAATGGCGGACATAGAAATCGAGAACACCAGATAAACCAAAACCGAGCCAGG
391 CGAGGAACTAGATGAATGGCGGACACAGAAATCGAGAACACCCGATAAATCGAAACTGAGCCAGG
*
94695313 ACGAGCTCAATACATCACCAAATCAACTTAAGGTTGGAGACAAAGTACTACTAGATGCAGCAGAT
456 ACAAGCTCAATACATCACCAAATCAACTTAAGGTTGGAGACAAAGTACTACTAGATGCAGCAGAT
* *
94695378 CCTTGCATTACCACTTCTGAACCTAATAAAGTAATCCCTCTTATGGTAATCAATATTTTCCCATA
521 CCTTGCATTACCACTTCTGAACCTAATAAAGTAATCCCTCTTACGGTACTCAATATTTTCCCATA
94695443 TGGTACAGTCGAGGTATCATTGAAGA
586 TGGTACAGTCGAGGTATCATTGAAGA
*
94695469 TGATAGAACCATTAGATTTCCTAGAGGTATCATTGAAGATGTTCTTGTTAAGATCGATAAA-TTA
1 TGATAAAACCATTAGATTTCCTAGAGGTATCATTGAAGATGTTCTTGTTAAGATCGATAAATTTA
*
94695533 TATACCCAGTAGACTTTCTTGTTTTAGACATGGAAGAAGATAGTAACGCACCTTTGATTTTAAGA
66 TATACCCAGTAGACTTTGTTGTTTTAGACATGGAAGAAGATAGTAACGCACCTTTGATTTTAAGA
*
94695598 CGACCCTTTTTAGCGACTGCTAGAACCATTATTGATGTCGGCACAAGTGAACTCACACTTCATGT
131 CGACCCTTTTTAGCGACTGCTAGAACCATTATTGATGTCGGCACAAGTGAACTCACACTTCGTGT
*
94695663 AGGAGATGAAACAATCACCCTTCAAGCTCGTAATTCGAATAACACATCGAAAATTGAAGGTGGTT
196 GGGAGATGAAACAATCACCCTTCAAGCTCGTAATTCGAATAACACATCGAAAATTGAAGGTGGTT
* * *
94695728 GTCTAAATTATTCTACTAAAATTGACCATCTGGTGCAACCTACTTTGCAGGAAATAAGTTCGAAG
261 GTATAAATCATTCTACTAAAACTGACCATCTGGTGCAACCTACTTTGCAGGAAATAAGTTCGAAG
*
94695793 AACCTATACGAGCCATGTTCAGGCAACAACAAAGG-CCTATCTATGAAGAACGACGGCTACAAAT
326 AACCTACACGAGCCATGTTCAGGCAACAACAAAGGACCTATCTATGAAGAACGACGGCTACAAAT
* * * *
94695857 CGAGGAACTAGATAAATGGTGGACACTGAAATCGAGAACACCCGATAAACTAAAAACACTCAATA
391 CGAGGAACTAGATGAATGGCGGACACAGAAATCGAGAACACCCG----A-T---AA-A-TC--GA
* * * * *
94695922 AACCAAAATCGAGCCAAGACGAGTTCAATCCATCACCAAATCAACTTAATGTTGGAGACAAAGTA
444 AA-C----T-GAGCCAGGACAAGCTCAATACATCACCAAATCAACTTAAGGTTGGAGACAAAGTA
94695987 CTACTAGATGCAGCAGATCCTTGCATTACCACTTCTGAACCTAATAAAGTAATCCCTCTTACGGT
503 CTACTAGATGCAGCAGATCCTTGCATTACCACTTCTGAACCTAATAAAGTAATCCCTCTTACGGT
* *
94696052 ACTCAATATTTTCCCATATAGTACAGTCGAGGTATCGTTGAAGA
568 ACTCAATATTTTCCCATATGGTACAGTCGAGGTATCATTGAAGA
94696096 TGATAAAACCATTAGATTTCCTAGAGGTATCATTGAAGATGTTCTTGTTAAGATCGATAAATTTA
1 TGATAAAACCATTAGATTTCCTAGAGGTATCATTGAAGATGTTCTTGTTAAGATCGATAAATTTA
* *
94696161 TATACCCAGTAGACTTTGTTGTTTTAGACATGGAAGAAAAGAGTAACGCACCTTTGATTTTAAGA
66 TATACCCAGTAGACTTTGTTGTTTTAGACATGGAAGAAGATAGTAACGCACCTTTGATTTTAAGA
* *
94696226 CGACCC-TTTTAGCGACTGCTAGAACCATTATTGATGTCAGCACAAGGGAACTCACACTTCGTGT
131 CGACCCTTTTTAGCGACTGCTAGAACCATTATTGATGTCGGCACAAGTGAACTCACACTTCGTGT
* *
94696290 GGGAGATGAAACAATCACCCTTCAAGCTCGTAATTTGAATAACACATCAAAAATTGAAGGTGGTT
196 GGGAGATGAAACAATCACCCTTCAAGCTCGTAATTCGAATAACACATCGAAAATTGAAGGTGGTT
* * * *
94696355 GTATAAATGATTCTACTAAAACTGACCATGTGGTGTAACCTCCTTTGCAGGAAATAAGTTCGGAA
261 GTATAAATCATTCTACTAAAACTGACCATCTGGTGCAACCTACTTTGCAGGAAATAAGTTC-GAA
* *
94696420 -AACCTACACGAGCCATGTTCAGGCAACAACAAAGAACCTATCTATGAAGAACGACGGCTACAGA
325 GAACCTACACGAGCCATGTTCAGGCAACAACAAAGGACCTATCTATGAAGAACGACGGCTACAAA
* *
94696484 TCGAGGAACTAGATGAATGGCGGACACAAAAATCGAGAACATCCGATAAATCGAAACTGAGCCAG
390 TCGAGGAACTAGATGAATGGCGGACACAGAAATCGAGAACACCCGATAAATCGAAACTGAGCCAG
94696549 GACAAGCTCAATACATCACCAAATCAACTTAAGGTTGGAGACAAAGTACTACTAGATGCAGCAGA
455 GACAAGCTCAATACATCACCAAATCAACTTAAGGTTGGAGACAAAGTACTACTAGATGCAGCAGA
* *
94696614 TCCTTGCATTACCACTTCTGAACCTAATAAAGTAATCCCTCTTATGGTACTCAATATTTTTCCAT
520 TCCTTGCATTACCACTTCTGAACCTAATAAAGTAATCCCTCTTACGGTACTCAATATTTTCCCAT
94696679 ATGGTACAGTCGAGGTATCATTGAAGA
585 ATGGTACAGTCGAGGTATCATTGAAGA
*
94696706 TGATAGAACCATTAGATTTCCTAGAGGTATCATTGAAGATGTTCTTGTTAAGATCGATAAATTTA
1 TGATAAAACCATTAGATTTCCTAGAGGTATCATTGAAGATGTTCTTGTTAAGATCGATAAATTTA
*
94696771 TATACCCAGTAGACTTTGTTGTTTTAGACATGGAAGAAGATAGTAACGCACCTTTGATTTTATGA
66 TATACCCAGTAGACTTTGTTGTTTTAGACATGGAAGAAGATAGTAACGCACCTTTGATTTTAAGA
*
94696836 CGACCCTTTTTAGCGACTGCTAGAACCGTTATTGATGTCGGCACAAGTGAACTCACACTTCGTGT
131 CGACCCTTTTTAGCGACTGCTAGAACCATTATTGATGTCGGCACAAGTGAACTCACACTTCGTGT
*
94696901 GGGAGATGAAACAATCACCCTTCAAGCTCGTAATTCGAATAACACATCGAAAATTGAATGTGGTT
196 GGGAGATGAAACAATCACCCTTCAAGCTCGTAATTCGAATAACACATCGAAAATTGAAGGTGGTT
* * *
94696966 GTATAAATCATTCTACTAAAATTCACAATCTGGTGCAACCTACTTTGCAGGAAATAAGTTCGAAG
261 GTATAAATCATTCTACTAAAACTGACCATCTGGTGCAACCTACTTTGCAGGAAATAAGTTCGAAG
*
94697031 AACCTACACGAGCCATGTTCAGGCAACAACAAAGGACCTATCTATGAAGAACGACGGCTACAGAT
326 AACCTACACGAGCCATGTTCAGGCAACAACAAAGGACCTATCTATGAAGAACGACGGCTACAAAT
* * *
94697096 CGAGGAACTATATGAATAGCAGACACAGAAATCGAGAACACCCGATAAATCGAAACTGAGCCAGG
391 CGAGGAACTAGATGAATGGCGGACACAGAAATCGAGAACACCCGATAAATCGAAACTGAGCCAGG
*
94697161 ACAAGCTCAATACATCACCAAATCAACTTAAGGTTGGAGACAAAGCACTACTAGATGCAGCAGAT
456 ACAAGCTCAATACATCACCAAATCAACTTAAGGTTGGAGACAAAGTACTACTAGATGCAGCAGAT
* * *
94697226 CCTCGCATTACCACTTCTGAACCTAATAAAGTAATCCCTCTTACGGTACTCAATACTTTCCCGTA
521 CCTTGCATTACCACTTCTGAACCTAATAAAGTAATCCCTCTTACGGTACTCAATATTTTCCCATA
94697291 TGGTACAGTCGAGGTATCATTGAAGA
586 TGGTACAGTCGAGGTATCATTGAAGA
*
94697317 TGATAAAACCATTAGATTTCCTAGAGGTATCACTGAAGATGTTCTTGTTAAGATCGATAAATTTA
1 TGATAAAACCATTAGATTTCCTAGAGGTATCATTGAAGATGTTCTTGTTAAGATCGATAAATTTA
* * * *
94697382 TATACCCATTAGAATTTGTTGTTTTAGACATGGAAGAAGATAGTAATGCACCTTTGATTTTAGGA
66 TATACCCAGTAGACTTTGTTGTTTTAGACATGGAAGAAGATAGTAACGCACCTTTGATTTTAAGA
* *
94697447 CGACCCTTTTTAGCGACTGCTAGAACCATTATTTATGTCGGTACAAGTGAACTCACACTTCGTGT
131 CGACCCTTTTTAGCGACTGCTAGAACCATTATTGATGTCGGCACAAGTGAACTCACACTTCGTGT
* * *
94697512 GGGAGATAAAACAATCACCCTTCAAGCTCGTAATTTGAATAACATATCGAAAATTGAAGGTGGTT
196 GGGAGATGAAACAATCACCCTTCAAGCTCGTAATTCGAATAACACATCGAAAATTGAAGGTGGTT
**
94697577 GTATAAATCATTCTACTAAAACTGACCATCTAATGCAACCTACTTTGCAGGAAATAAGTTCGAAG
261 GTATAAATCATTCTACTAAAACTGACCATCTGGTGCAACCTACTTTGCAGGAAATAAGTTCGAAG
*
94697642 AACCTACACGAGCCATGTTCAGGCAACAACAAAGGACCCATCTATGAAGAACGACGGCTACAAAT
326 AACCTACACGAGCCATGTTCAGGCAACAACAAAGGACCTATCTATGAAGAACGACGGCTACAAAT
* * * * * * *
94697707 TGAGGAACTAGATGAATTGCGGACATAGAAATCGAGAACACCAGATAAACCAAAACCGAGCCAGG
391 CGAGGAACTAGATGAATGGCGGACACAGAAATCGAGAACACCCGATAAATCGAAACTGAGCCAGG
*
94697772 ACGAGCTCAATACATCACCAAATCAACTTAAGGTTGGAGACAAAGTACTACTAGATGCAGCAGAT
456 ACAAGCTCAATACATCACCAAATCAACTTAAGGTTGGAGACAAAGTACTACTAGATGCAGCAGAT
*
94697837 CCTTGCATTACCACTTCTGAACCTAATAAAGTAATCCCTCTTACGGTACTCAATATTTTACCATA
521 CCTTGCATTACCACTTCTGAACCTAATAAAGTAATCCCTCTTACGGTACTCAATATTTTCCCATA
94697902 TGGTACAGTCGAGGTATCATTGAAGA
586 TGGTACAGTCGAGGTATCATTGAAGA
*
94697928 TGATAAAACCATTAGATTTCCTAGAGGTATCATTAAAGATGTTCTTGTTAAGATCGATAAATTTA
1 TGATAAAACCATTAGATTTCCTAGAGGTATCATTGAAGATGTTCTTGTTAAGATCGATAAATTTA
* *
94697993 TATACCCAGTAGACTTTGTTGTTTTAGACATGGAAGAAGATAGTAATGCACCTTTGATTTTAGGA
66 TATACCCAGTAGACTTTGTTGTTTTAGACATGGAAGAAGATAGTAACGCACCTTTGATTTTAAGA
*
94698058 CGACCCTTTTTAGCGACTGCTAGAACCATTATTGATATCGGCACAAGTGAACTCACACTTCGTGT
131 CGACCCTTTTTAGCGACTGCTAGAACCATTATTGATGTCGGCACAAGTGAACTCACACTTCGTGT
* * *
94698123 GGGAGATGCAACAATCACCCTTCAAGCTCGTAATTCGAATAACACATCAAAAATTAAAGGTGGTT
196 GGGAGATGAAACAATCACCCTTCAAGCTCGTAATTCGAATAACACATCGAAAATTGAAGGTGGTT
* * * * * *
94698188 GTATAAATCATTTTACTAAAACTAACCATGTGGTGCAAACTACTTTGCAGGAAATAAGTTTGGAG
261 GTATAAATCATTCTACTAAAACTGACCATCTGGTGCAACCTACTTTGCAGGAAATAAGTTCGAAG
*
94698253 AACCTACACGAGCCATGTTCAGGCAACAACAAAGGACCTATCTATGAAGAAAGACGGCTACAAAT
326 AACCTACACGAGCCATGTTCAGGCAACAACAAAGGACCTATCTATGAAGAACGACGGCTACAAAT
* * * * * *
94698318 CGAGGAACTAGATGAATGGTGGACACAAAAATTGAGAACACCCGATAAACCGAATCTGAGCTAGG
391 CGAGGAACTAGATGAATGGCGGACACAGAAATCGAGAACACCCGATAAATCGAAACTGAGCCAGG
* * * * *
94698383 ACGAGATCAATACATCACCAAATCAACTTAAGGCTGGAGACAAAGCACTATTAGATGCAGCAGAT
456 ACAAGCTCAATACATCACCAAATCAACTTAAGGTTGGAGACAAAGTACTACTAGATGCAGCAGAT
* * **
94698448 CCTCGCATTACCACTTCTAAAGATAATAAAGTAATCCCTCTTACGGTACTCAATATTTTCCCATA
521 CCTTGCATTACCACTTCTGAACCTAATAAAGTAATCCCTCTTACGGTACTCAATATTTTCCCATA
94698513 TGGTACAGTCGAGG
586 TGGTACAGTCGAGG
94698527 CAATTCATCC
Statistics
Matches: 6259, Mismatches: 416, Indels: 152
0.92 0.06 0.02
Matches are distributed among these distances:
605 40 0.01
606 278 0.04
607 249 0.04
608 3 0.00
609 175 0.03
610 1049 0.17
611 2715 0.43
612 6 0.00
613 2 0.00
614 3 0.00
615 6 0.00
616 7 0.00
617 6 0.00
618 7 0.00
619 9 0.00
620 5 0.00
621 8 0.00
622 3 0.00
623 6 0.00
624 3 0.00
626 5 0.00
627 1109 0.18
628 473 0.08
629 92 0.01
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.26
Consensus pattern (611 bp):
TGATAAAACCATTAGATTTCCTAGAGGTATCATTGAAGATGTTCTTGTTAAGATCGATAAATTTA
TATACCCAGTAGACTTTGTTGTTTTAGACATGGAAGAAGATAGTAACGCACCTTTGATTTTAAGA
CGACCCTTTTTAGCGACTGCTAGAACCATTATTGATGTCGGCACAAGTGAACTCACACTTCGTGT
GGGAGATGAAACAATCACCCTTCAAGCTCGTAATTCGAATAACACATCGAAAATTGAAGGTGGTT
GTATAAATCATTCTACTAAAACTGACCATCTGGTGCAACCTACTTTGCAGGAAATAAGTTCGAAG
AACCTACACGAGCCATGTTCAGGCAACAACAAAGGACCTATCTATGAAGAACGACGGCTACAAAT
CGAGGAACTAGATGAATGGCGGACACAGAAATCGAGAACACCCGATAAATCGAAACTGAGCCAGG
ACAAGCTCAATACATCACCAAATCAACTTAAGGTTGGAGACAAAGTACTACTAGATGCAGCAGAT
CCTTGCATTACCACTTCTGAACCTAATAAAGTAATCCCTCTTACGGTACTCAATATTTTCCCATA
TGGTACAGTCGAGGTATCATTGAAGA
Found at i:94704491 original size:51 final size:49
Alignment explanation
Indices: 94704436--94704544 Score: 186
Period size: 48 Copynumber: 2.2 Consensus size: 49
94704426 TTTGGGACCA
94704436 TAAATTTGACATCAAAATATTTATTTTATGATTATTATGATGTGACACCCC
1 TAAATTTGAC--CAAAATATTTATTTTATGATTATTATGATGTGACACCCC
94704487 TAAA-TTGACCAAAATATTTATTTTATGATTATTATGATGTGACACCCC
1 TAAATTTGACCAAAATATTTATTTTATGATTATTATGATGTGACACCCC
94704535 TAAA-TTGACC
1 TAAATTTGACC
94704545 CTAGTCGGAA
Statistics
Matches: 58, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
48 49 0.84
50 5 0.09
51 4 0.07
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (49 bp):
TAAATTTGACCAAAATATTTATTTTATGATTATTATGATGTGACACCCC
Found at i:94704510 original size:48 final size:48
Alignment explanation
Indices: 94704448--94704544 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
94704438 AATTTGACAT
94704448 CAAAATATTTATTTTATGATTATTATGATGTGACACCCCTAAATTGAC
1 CAAAATATTTATTTTATGATTATTATGATGTGACACCCCTAAATTGAC
94704496 CAAAATATTTATTTTATGATTATTATGATGTGACACCCCTAAATTGAC
1 CAAAATATTTATTTTATGATTATTATGATGTGACACCCCTAAATTGAC
94704544 C
1 C
94704545 CTAGTCGGAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.39
Consensus pattern (48 bp):
CAAAATATTTATTTTATGATTATTATGATGTGACACCCCTAAATTGAC
Found at i:94706377 original size:42 final size:41
Alignment explanation
Indices: 94706290--94706393 Score: 129
Period size: 42 Copynumber: 2.5 Consensus size: 41
94706280 AGCTTGGTCT
* *
94706290 CGAAGGGCTTTTGAGCCAGTGCTAATAGCCGAACTTAGTTT
1 CGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTC
* *
94706331 CGAAGGGCTTTTTAGAGCCAGTGC-CATAACCGGACTTAGTTC
1 CGAAGGGC-TTTT-GAGCCAGTGCTAATAACCGAACTTAGTTC
* *
94706373 CGAAGGGCCTTCGAGCCAGTG
1 CGAAGGGCTTTTGAGCCAGTG
94706394 GTCTAATCCG
Statistics
Matches: 55, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
40 9 0.16
41 10 0.18
42 26 0.47
43 10 0.18
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (41 bp):
CGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTTC
Found at i:94706430 original size:41 final size:40
Alignment explanation
Indices: 94706269--94706430 Score: 143
Period size: 41 Copynumber: 3.9 Consensus size: 40
94706259 GCTAATCGGG
*
94706269 GTCTAAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGT
1 GTCT-AATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
* *
94706310 G-CTAATAGCCGAACTTAGTTTCGAAGGGCTTTTTAGAGCCAGT
1 GTCTAAT--CCGAGCTTAGTCTCGAAGGGC-TTTT-GAGCCAGT
* * *
94706353 GCCATAA-CCG-GACTTAGT-TCCGAAGGGCCTTCGAGCCAGT
1 GTC-TAATCCGAG-CTTAGTCT-CGAAGGGCTTTTGAGCCAGT
* *
94706393 GGTCTAATCCGAGCTTGGTCTCAAAGGGCTTTTGAGCC
1 -GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCC
94706431 GGTACTAAGA
Statistics
Matches: 98, Mismatches: 11, Indels: 24
0.74 0.08 0.18
Matches are distributed among these distances:
39 3 0.03
40 13 0.13
41 46 0.47
42 23 0.23
43 9 0.09
44 1 0.01
45 3 0.03
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
Found at i:94709924 original size:22 final size:22
Alignment explanation
Indices: 94709896--94709943 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
94709886 AATGAAGACA
94709896 TGTAAAGATATACACATCTATT
1 TGTAAAGATATACACATCTATT
*
94709918 TGTAAAGATATACATATCTATT
1 TGTAAAGATATACACATCTATT
94709940 TGTA
1 TGTA
94709944 TATGGCCATG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
Consensus pattern (22 bp):
TGTAAAGATATACACATCTATT
Found at i:94712149 original size:27 final size:26
Alignment explanation
Indices: 94712112--94712223 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
94712102 AGCATGGCTG
* *
94712112 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
94712138 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
94712166 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
94712193 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
94712220 CCAG
1 CCAG
94712224 GACGCTTCCT
Statistics
Matches: 78, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
26 5 0.06
27 56 0.72
28 17 0.22
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:94712171 original size:54 final size:54
Alignment explanation
Indices: 94712112--94712223 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
94712102 AGCATGGCTG
*
94712112 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
94712166 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
94712220 CCAG
1 CCAG
94712224 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:94712652 original size:42 final size:42
Alignment explanation
Indices: 94712605--94712688 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 42
94712595 TCGCAAGATC
* *
94712605 TCAAAATACCGGCTTTTCGGCATTTCGGCTTTTCAGCTTGTG
1 TCAAAATACCGGCTTTTCGACATTTCAGCTTTTCAGCTTGTG
*
94712647 TCAAAATATCGGCTTTTCGACATTTCAGCTTTTCAGCTTGTG
1 TCAAAATACCGGCTTTTCGACATTTCAGCTTTTCAGCTTGTG
94712689 CCGATCTAGT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.39
Consensus pattern (42 bp):
TCAAAATACCGGCTTTTCGACATTTCAGCTTTTCAGCTTGTG
Found at i:94725282 original size:9 final size:9
Alignment explanation
Indices: 94725226--94725286 Score: 50
Period size: 9 Copynumber: 6.1 Consensus size: 9
94725216 GTAACTTTTT
94725226 AAATTATAA
1 AAATTATAA
94725235 AAATGTATACAA
1 AAAT-TAT--AA
94725247 AAATTTATTAA
1 AAA-TTA-TAA
**
94725258 AAATTGGAA
1 AAATTATAA
94725267 AATATTATAA
1 AA-ATTATAA
94725277 AAATTATAA
1 AAATTATAA
94725286 A
1 A
94725287 TAAAAAGAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
9 16 0.38
10 12 0.29
11 5 0.12
12 7 0.17
13 2 0.05
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.33
Consensus pattern (9 bp):
AAATTATAA
Found at i:94725922 original size:24 final size:24
Alignment explanation
Indices: 94725876--94725957 Score: 71
Period size: 24 Copynumber: 3.3 Consensus size: 24
94725866 TTTGCTAGAA
* *
94725876 AGAAAGAAGGGAAAGTAAGAAAAT
1 AGAAAAAAGGGAAAATAAGAAAAT
94725900 AGAAAAAAGGGAAAATGAA-AAAAT
1 AGAAAAAAGGGAAAAT-AAGAAAAT
*
94725924 AAAAAAAGAGAGGAGAAA-AAGATAAA-
1 AGAAAAA-AG-GGA-AAATAAGA-AAAT
94725950 AGAAAAAA
1 AGAAAAAA
94725958 TACTAAAAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 11
0.76 0.06 0.17
Matches are distributed among these distances:
24 25 0.52
25 7 0.15
26 10 0.21
27 6 0.12
ACGTcount: A:0.71, C:0.00, G:0.23, T:0.06
Consensus pattern (24 bp):
AGAAAAAAGGGAAAATAAGAAAAT
Found at i:94736145 original size:41 final size:40
Alignment explanation
Indices: 94735984--94736145 Score: 152
Period size: 41 Copynumber: 3.9 Consensus size: 40
94735974 GCTAATCGGG
* *
94735984 GTCTAAATCCAAGCTTGGTCTCGAAGGGCTTTTGAGCCAGT
1 GTCT-AATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
* *
94736025 G-CTAATAGCCGAACTTAGTTTCGAAGGGCTTTTTAGAGCCAGT
1 GTCTAAT--CCGAGCTTAGTCTCGAAGGGC-TTTT-GAGCCAGT
* *
94736068 GTCATAA-CC-AGACTTAGT-TCCGAAGGGCCTTCGAGCCAGT
1 GTC-TAATCCGAG-CTTAGTCT-CGAAGGGCTTTTGAGCCAGT
*
94736108 GGTCTAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCC
1 -GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCC
94736146 GGTACTAAGA
Statistics
Matches: 99, Mismatches: 10, Indels: 24
0.74 0.08 0.18
Matches are distributed among these distances:
39 3 0.03
40 13 0.13
41 47 0.47
42 23 0.23
43 9 0.09
44 1 0.01
45 3 0.03
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.28
Consensus pattern (40 bp):
GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
Found at i:94744401 original size:41 final size:40
Alignment explanation
Indices: 94744240--94744401 Score: 161
Period size: 41 Copynumber: 3.9 Consensus size: 40
94744230 GCTAATCGGG
*
94744240 GTCTAAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGT
1 GTCT-AATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
* *
94744281 G-CTAATAGCCGAACTTAGTTTCGAAGGGCTTTTTAGAGCCAGT
1 GTCTAAT--CCGAGCTTAGTCTCGAAGGGC-TTTT-GAGCCAGT
* *
94744324 GTCATAA-CCG-GACTTAGT-TCCGAAGGGCCTTCGAGCCAGT
1 GTC-TAATCCGAG-CTTAGTCT-CGAAGGGCTTTTGAGCCAGT
*
94744364 GGTCTAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCC
1 -GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCC
94744402 GGTACTAAGA
Statistics
Matches: 100, Mismatches: 9, Indels: 24
0.75 0.07 0.18
Matches are distributed among these distances:
39 3 0.03
40 13 0.13
41 48 0.48
42 23 0.23
43 9 0.09
44 1 0.01
45 3 0.03
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (40 bp):
GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
Found at i:94749173 original size:17 final size:17
Alignment explanation
Indices: 94749151--94749183 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
94749141 AAGATAAAAG
*
94749151 AAATAAGAAAATTAAAT
1 AAATAAGAAAAATAAAT
94749168 AAATAAGAAAAATAAA
1 AAATAAGAAAAATAAA
94749184 CTAACCACTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.18
Consensus pattern (17 bp):
AAATAAGAAAAATAAAT
Found at i:94754146 original size:40 final size:40
Alignment explanation
Indices: 94754045--94754256 Score: 230
Period size: 40 Copynumber: 5.3 Consensus size: 40
94754035 TATTCGAATG
* * * *
94754045 ATATCCGGGCTAAGTCCCAAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGACT
* * *
94754086 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
94754126 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * * *
94754166 ATATTCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* **
94754206 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
94754245 ATATCC-GGCTAA
1 ATATCCGGGCTAA
94754257 ATCCCAAAGA
Statistics
Matches: 142, Mismatches: 29, Indels: 3
0.82 0.17 0.02
Matches are distributed among these distances:
38 6 0.04
39 15 0.11
40 94 0.66
41 27 0.19
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:94764506 original size:27 final size:27
Alignment explanation
Indices: 94764475--94764652 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
94764465 TAAATTGTAC
94764475 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
94764502 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
94764528 ATGCACTAAGTGTGCGAATTGACGATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
94764556 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
94764584 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
94764611 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
94764638 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
94764653 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:94764589 original size:82 final size:81
Alignment explanation
Indices: 94764476--94764631 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
94764466 AAATTGTACA
* *
94764476 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
94764540 TGCGAATTGACGATGCG
65 TGCGAATTGACGATGCG
** *
94764557 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
94764622 TGCGAGTTGA
65 TGCGAATTGA
94764632 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACGATGCG
Found at i:94764643 original size:82 final size:81
Alignment explanation
Indices: 94764472--94764652 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
94764462 GATTAAATTG
* *
94764472 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
94764537 GTGTGCGAATTGACGA
66 GTGTGCGAATTGACGA
* * ** *
94764553 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
94764617 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACGA
* *
94764635 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
94764653 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACGA
Found at i:94773709 original size:20 final size:20
Alignment explanation
Indices: 94773684--94773724 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
94773674 TGTTCGGAAT
94773684 ACCTTTTGGATATGATAGTA
1 ACCTTTTGGATATGATAGTA
94773704 ACCTTTTGGATATGATAGTA
1 ACCTTTTGGATATGATAGTA
94773724 A
1 A
94773725 AATTTTTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.39
Consensus pattern (20 bp):
ACCTTTTGGATATGATAGTA
Found at i:94773730 original size:20 final size:20
Alignment explanation
Indices: 94773687--94773730 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
94773677 TCGGAATACC
**
94773687 TTTTGGATATGATAGTAACC
1 TTTTGGATATGATAGTAAAA
94773707 TTTTGGATATGATAGTAAAA
1 TTTTGGATATGATAGTAAAA
94773727 TTTT
1 TTTT
94773731 TTGAGCTCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.32, C:0.05, G:0.18, T:0.45
Consensus pattern (20 bp):
TTTTGGATATGATAGTAAAA
Found at i:94778517 original size:16 final size:15
Alignment explanation
Indices: 94778492--94778521 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
94778482 TGGTTGAAAT
94778492 TTTAATTTTTTATAG
1 TTTAATTTTTTATAG
94778507 TTTATATTTTTTATA
1 TTTA-ATTTTTTATA
94778522 ATTTGTAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (15 bp):
TTTAATTTTTTATAG
Found at i:94781609 original size:27 final size:27
Alignment explanation
Indices: 94781488--94781611 Score: 92
Period size: 27 Copynumber: 4.6 Consensus size: 27
94781478 CAGAATTTTC
* *
94781488 CACAAAGGC-ATCCCTTTCAGTGTTCGT
1 CACAAAGGCTAT-TCTTTCAGAGTTCGT
* * *
94781515 CACAAAGACTGTTCTTTCAGAGTTAG-
1 CACAAAGGCTATTCTTTCAGAGTTCGT
* *
94781541 CTACAAAGGCTATTCTTTTAGAGTT-TT
1 C-ACAAAGGCTATTCTTTCAGAGTTCGT
* ** * *
94781568 CCAAAAATTCCATTCTTTCAGAGCTCGT
1 -CACAAAGGCTATTCTTTCAGAGTTCGT
94781596 CACAAAGGCTATTCTT
1 CACAAAGGCTATTCTT
94781612 AGTTGTCGTG
Statistics
Matches: 72, Mismatches: 20, Indels: 10
0.71 0.20 0.10
Matches are distributed among these distances:
26 1 0.01
27 68 0.94
28 3 0.04
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.34
Consensus pattern (27 bp):
CACAAAGGCTATTCTTTCAGAGTTCGT
Found at i:94782644 original size:31 final size:31
Alignment explanation
Indices: 94782606--94782680 Score: 123
Period size: 31 Copynumber: 2.4 Consensus size: 31
94782596 GTACAGGGGT
* *
94782606 CACACGCCCGTGTGGGCAGGCTGTGTGGTCA
1 CACACGCCCATGTGGGCAGGCTATGTGGTCA
*
94782637 CACACGCCCATGTGGGCAGGTTATGTGGTCA
1 CACACGCCCATGTGGGCAGGCTATGTGGTCA
94782668 CACACGCCCATGT
1 CACACGCCCATGT
94782681 CCCTAACTCG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.17, C:0.31, G:0.32, T:0.20
Consensus pattern (31 bp):
CACACGCCCATGTGGGCAGGCTATGTGGTCA
Found at i:94787686 original size:43 final size:41
Alignment explanation
Indices: 94787583--94787715 Score: 117
Period size: 43 Copynumber: 3.1 Consensus size: 41
94787573 CATGCTATCT
* * *
94787583 CATATCGATGCCACTGTCCCAGATAGGGTCTTACATGAATCA
1 CATATCGATGCCAC-GTCCCAGATATGGTCTTACACGAAACA
* * * *
94787625 AATA-CGATGCTGATGTCCCAG-TCATGGTCTTACACGTAACCA
1 CATATCGATGC-CACGTCCCAGAT-ATGGTCTTACACG-AAACA
* *
94787667 CATATCGATGCCAACGTCCCTGATGTGGTCTTACACGAAAACA
1 CATATCGATGCC-ACGTCCCAGATATGGTCTTACACG-AAACA
94787710 CATATC
1 CATATC
94787716 AGATCCTATG
Statistics
Matches: 72, Mismatches: 13, Indels: 11
0.75 0.14 0.11
Matches are distributed among these distances:
40 1 0.01
41 24 0.33
42 11 0.15
43 35 0.49
44 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (41 bp):
CATATCGATGCCACGTCCCAGATATGGTCTTACACGAAACA
Found at i:94788394 original size:25 final size:25
Alignment explanation
Indices: 94788352--94788422 Score: 108
Period size: 25 Copynumber: 2.9 Consensus size: 25
94788342 ACTAACATTA
*
94788352 CATAGCTC-AAATATTCATCAATGG
1 CATAACTCAAAATATTCATCAATGG
94788376 CATAACTCAAAATATTCATCAATGG
1 CATAACTCAAAATATTCATCAATGG
* *
94788401 CATAAATCAAAATGTTCATCAA
1 CATAACTCAAAATATTCATCAA
94788423 AATAAAAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
24 7 0.16
25 36 0.84
ACGTcount: A:0.44, C:0.20, G:0.08, T:0.28
Consensus pattern (25 bp):
CATAACTCAAAATATTCATCAATGG
Found at i:94789945 original size:15 final size:16
Alignment explanation
Indices: 94789916--94789945 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
94789906 TAAACATGCT
94789916 TTAACACATTATCAAA
1 TTAACACATTATCAAA
94789932 TTAACACA-TATCAA
1 TTAACACATTATCAA
94789946 CAAGGCACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:94790346 original size:24 final size:24
Alignment explanation
Indices: 94790301--94790346 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
94790291 AAAACCATAT
*
94790301 TCCACAACTCACAAAGTGAATAAA
1 TCCACAACTCACAAAGTAAATAAA
*
94790325 TCCACAACATCACATA-TAAATA
1 TCCACAAC-TCACAAAGTAAATA
94790347 TCATCCCTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 13 0.68
25 6 0.32
ACGTcount: A:0.50, C:0.26, G:0.04, T:0.20
Consensus pattern (24 bp):
TCCACAACTCACAAAGTAAATAAA
Found at i:94790422 original size:20 final size:21
Alignment explanation
Indices: 94790393--94790431 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
94790383 ACCCTTTCAA
*
94790393 ATTTTCTTACTTT-CATTTGC
1 ATTTTATTACTTTCCATTTGC
94790413 ATTTTATTACTTTCCATTT
1 ATTTTATTACTTTCCATTT
94790432 TATTTACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.18, C:0.18, G:0.03, T:0.62
Consensus pattern (21 bp):
ATTTTATTACTTTCCATTTGC
Found at i:94790432 original size:15 final size:16
Alignment explanation
Indices: 94790412--94790442 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
94790402 CTTTCATTTG
94790412 CATTTTA-TTACTTTC
1 CATTTTATTTACTTTC
94790427 CATTTTATTTACTTTC
1 CATTTTATTTACTTTC
94790443 TTTAGCTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.19, C:0.19, G:0.00, T:0.61
Consensus pattern (16 bp):
CATTTTATTTACTTTC
Found at i:94812749 original size:33 final size:34
Alignment explanation
Indices: 94812706--94812780 Score: 107
Period size: 33 Copynumber: 2.2 Consensus size: 34
94812696 AGAAACACTA
* *
94812706 ACATATAACCTAAAATTAAGTAGTTGCCTTTCTT
1 ACATATAACCTAAAATCAAGAAGTTGCCTTTCTT
* *
94812740 ACATA-AACCTAGAATCAAGAAGTTTCCTTTCTT
1 ACATATAACCTAAAATCAAGAAGTTGCCTTTCTT
94812773 ACATATAA
1 ACATATAA
94812781 TTCTAACACT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
33 29 0.81
34 7 0.19
ACGTcount: A:0.39, C:0.19, G:0.08, T:0.35
Consensus pattern (34 bp):
ACATATAACCTAAAATCAAGAAGTTGCCTTTCTT
Found at i:94828193 original size:44 final size:43
Alignment explanation
Indices: 94828120--94828283 Score: 136
Period size: 43 Copynumber: 3.8 Consensus size: 43
94828110 ATGTGAACAA
* ** *
94828120 CGATCTGAGATATCGTGTAAGACTGTGTCTGGGACATAGGCCT
1 CGATCTGAGATTTCGTGTAAGACCATGTCTGGGACATAGGCAT
* * * *
94828163 CGATTTGAGATTTACGTGTAAGACCATGTCTGAGACATCGACAT
1 CGATCTGAGATTT-CGTGTAAGACCATGTCTGGGACATAGGCAT
* * *
94828207 CGTATCT-A-ATTTCGTGTAAGACCTTGTCTAGGACAGAGGCAT
1 CG-ATCTGAGATTTCGTGTAAGACCATGTCTGGGACATAGGCAT
* * * * *
94828249 CGATACT-AAATTACATGTAAGACCACGTTTGGGAC
1 CGAT-CTGAGATTTCGTGTAAGACCATGTCTGGGAC
94828284 GTCGGCATTG
Statistics
Matches: 96, Mismatches: 21, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
41 2 0.02
42 29 0.30
43 35 0.36
44 27 0.28
45 3 0.03
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (43 bp):
CGATCTGAGATTTCGTGTAAGACCATGTCTGGGACATAGGCAT
Found at i:94828250 original size:42 final size:41
Alignment explanation
Indices: 94828132--94828272 Score: 115
Period size: 42 Copynumber: 3.3 Consensus size: 41
94828122 ATCTGAGATA
* * *
94828132 TCGTGTAAGA-CTGTGTCTGGGACATAGGCCTCGATTTGAGATT
1 TCGTGTAAGACCT-TGTCT-GGACATAGGCATCGATCT-AAATT
* * *
94828175 TACGTGTAAGACCATGTCTGAGACATCGACATCGTATCT-AATT
1 T-CGTGTAAGACCTTGTCTG-GACATAGGCATCG-ATCTAAATT
*
94828218 TCGTGTAAGACCTTGTCTAGGACAGAGGCATCGATACTAAATT
1 TCGTGTAAGACCTTGTCT-GGACATAGGCATCGAT-CTAAATT
* *
94828261 ACATGTAAGACC
1 TCGTGTAAGACC
94828273 ACGTTTGGGA
Statistics
Matches: 79, Mismatches: 12, Indels: 14
0.75 0.11 0.13
Matches are distributed among these distances:
41 2 0.03
42 28 0.35
43 21 0.27
44 24 0.30
45 4 0.05
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.29
Consensus pattern (41 bp):
TCGTGTAAGACCTTGTCTGGACATAGGCATCGATCTAAATT
Found at i:94836600 original size:47 final size:46
Alignment explanation
Indices: 94836299--94836612 Score: 183
Period size: 47 Copynumber: 6.7 Consensus size: 46
94836289 CTTGTGTGCT
* * ** *
94836299 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCATATTATGAGAGCG
1 AGTGTAAGACATGTCTGGGACATGGCATC-GACTTAACATGAGAGCC
* * * * *
94836345 AGTGTAAGACCATGTCTAGGACATGGCATCGACATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGAC-TTAACATGAGAGCC
* * * *** *
94836393 AGTGTAAGACATGTCTGGGACAT-GCGTCGGCCTCGAGGTTTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGGCATC-GACT-TAACATGAGAGCC
* * * *
94836439 AGTGTAACACATGTCCGGGACAT-GCATC-AGCTT--CATGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGGCATCGA-CTTAACATGA-GAGCC
* * ** **
94836483 AGTATAAGACCATGTGTGGGACATGGCATCGACACAGATACATGAGAGTT
1 AGTGTAAGA-CATGTCTGGGACATGGCATCG--ACTTA-ACATGAGAGCC
* * *
94836533 AGTGTAAGGCGATGTTTGGGACATGGCATCGACTTAACGTGAGAGCC
1 AGTGTAAGAC-ATGTCTGGGACATGGCATCGACTTAACATGAGAGCC
*
94836580 AGTGTAAGACTATGTCTGGGACATGACATCGAC
1 AGTGTAAGAC-ATGTCTGGGACATGGCATCGAC
94836613 ATTATACCCT
Statistics
Matches: 203, Mismatches: 48, Indels: 33
0.71 0.17 0.12
Matches are distributed among these distances:
42 2 0.01
44 9 0.04
45 14 0.07
46 47 0.23
47 69 0.34
48 26 0.13
49 2 0.01
50 29 0.14
51 5 0.02
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGACTTAACATGAGAGCC
Found at i:94839314 original size:37 final size:37
Alignment explanation
Indices: 94839256--94839326 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
94839246 TAGCTTGAAT
*
94839256 AATCCCCACACGTAGTTATCGGGTCTTACCCGGACAA
1 AATCCCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
94839293 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCCCCACACGTAGTCATCGGGTCTTACCCGGA
94839327 ATATATTTCC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
AATCCCCACACGTAGTCATCGGGTCTTACCCGGACAA
Found at i:94839526 original size:46 final size:46
Alignment explanation
Indices: 94839470--94839606 Score: 166
Period size: 46 Copynumber: 3.0 Consensus size: 46
94839460 TATATATACA
* * * * * *
94839470 CATCTTATACATATCTCACATTAGCCATTTGGCTTTACCACGTATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * * *
94839516 CATCTCATACACGTTTTGCATTAGCCACTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
**
94839562 CATCTCATACACATTTCGCATTAGCCATTCGGCTTCGCCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
94839607 ATACACTTCC
Statistics
Matches: 75, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.24, C:0.31, G:0.10, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:94839651 original size:47 final size:47
Alignment explanation
Indices: 94839620--94839978 Score: 450
Period size: 47 Copynumber: 7.2 Consensus size: 47
94839610 CACTTCCACG
** *
94839620 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
94839667 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
94839714 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
94839761 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
94839808 TTCATCACATTGGCCATTCGGCCTTATCACACATATTCGGCCT-TATCACACATATGCA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATA-T--GCATGT-T----C--A--CA
*
94839866 TGTTCACATTCATCACATTGGTCATTCGGCCTTATCACACATATGCATGTTCACA
1 --TT--CAT----CACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* *
94839921 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
94839968 TTCGTCACATT
1 TTCATCACATT
94839979 AAAATCCTAA
Statistics
Matches: 279, Mismatches: 12, Indels: 42
0.84 0.04 0.13
Matches are distributed among these distances:
47 220 0.79
48 1 0.00
49 1 0.00
50 4 0.01
51 3 0.01
53 2 0.01
54 1 0.00
55 2 0.01
56 1 0.00
57 1 0.00
58 2 0.01
59 1 0.00
60 2 0.01
62 3 0.01
63 4 0.01
64 1 0.00
65 1 0.00
66 29 0.10
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.33
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
Found at i:94839768 original size:25 final size:25
Alignment explanation
Indices: 94839739--94839816 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
94839729 ATTCGGCCTT
94839739 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
94839764 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
94839786 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
94839811 ATCACA
1 ATCACA
94839817 TTGGCCATTC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 6 0.15
23 11 0.28
24 11 0.28
25 12 0.30
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.31
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:94839791 original size:22 final size:22
Alignment explanation
Indices: 94839764--94839838 Score: 57
Period size: 22 Copynumber: 3.3 Consensus size: 22
94839754 GTTCACATTC
94839764 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
94839786 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGGCCTT
94839810 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
94839833 ATCACA
1 ATCACA
94839839 CATATTCGGC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 12 0.30
23 11 0.28
24 11 0.28
25 6 0.15
ACGTcount: A:0.25, C:0.31, G:0.13, T:0.31
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:94839847 original size:19 final size:19
Alignment explanation
Indices: 94839823--94839862 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
94839813 CACATTGGCC
94839823 ATTCGGCCTTATCACACAT
1 ATTCGGCCTTATCACACAT
94839842 ATTCGGCCTTATCACACAT
1 ATTCGGCCTTATCACACAT
94839861 AT
1 AT
94839863 GCATGTTCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.33
Consensus pattern (19 bp):
ATTCGGCCTTATCACACAT
Found at i:94839853 original size:66 final size:66
Alignment explanation
Indices: 94839776--94839909 Score: 259
Period size: 66 Copynumber: 2.0 Consensus size: 66
94839766 CACATTGGCC
94839776 ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
1 ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
94839841 T
66 T
*
94839842 ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGTCATTCGGCCTTATCACACA
1 ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
94839907 T
66 T
94839908 AT
1 AT
94839910 GCATGTTCAC
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 67 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (66 bp):
ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
T
Found at i:94839861 original size:160 final size:160
Alignment explanation
Indices: 94839682--94839978 Score: 549
Period size: 160 Copynumber: 1.9 Consensus size: 160
94839672 CACATTGGCC
94839682 ATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
1 ATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
*
94839747 TATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
66 TATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
94839812 TCACATTGGCCATTCGGCCTTATCACACAT
131 TCACATTGGCCATTCGGCCTTATCACACAT
* *
94839842 ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGTCATTCGGCCTTATCACACA
1 ATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
* *
94839907 TATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCG
66 TATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
94839972 TCACATT
131 TCACATT
94839979 AAAATCCTAA
Statistics
Matches: 132, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
160 132 1.00
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (160 bp):
ATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
TATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
TCACATTGGCCATTCGGCCTTATCACACAT
Found at i:94839862 original size:113 final size:113
Alignment explanation
Indices: 94839729--94839956 Score: 438
Period size: 113 Copynumber: 2.0 Consensus size: 113
94839719 CACATTGGCC
94839729 ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
1 ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
94839794 TATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACAT
66 TATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACAT
*
94839842 ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGTCATTCGGCCTTATCACACA
1 ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
*
94839907 TATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAT
66 TATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACAT
94839955 AT
1 AT
94839957 GCATGCTCAC
Statistics
Matches: 113, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
113 113 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (113 bp):
ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
TATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACAT
Found at i:94839928 original size:25 final size:25
Alignment explanation
Indices: 94839852--94839929 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
94839842 ATTCGGCCTT
94839852 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
94839877 AT--CACAT-TGGTCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
94839899 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
94839924 ATCACA
1 ATCACA
94839930 TTGGCCATTC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 6 0.15
23 11 0.28
24 11 0.28
25 12 0.30
ACGTcount: A:0.29, C:0.28, G:0.10, T:0.32
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:94844342 original size:26 final size:26
Alignment explanation
Indices: 94844313--94844365 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
94844303 TCAAACATGC
*
94844313 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGAT-AATTTAACTCCTAGGGGT
* *
94844339 ATTTCGATAATTTATCTCCTAGGGGT
1 ATTTAGATAATTTAACTCCTAGGGGT
94844365 A
1 A
94844366 AAACTATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAGATAATTTAACTCCTAGGGGT
Found at i:94845887 original size:26 final size:26
Alignment explanation
Indices: 94845851--94845934 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
94845841 CATGAAATTC
94845851 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
94845877 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
94845903 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
94845929 TTATCA
1 TTATCA
94845935 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:94848141 original size:26 final size:26
Alignment explanation
Indices: 94848112--94848213 Score: 107
Period size: 26 Copynumber: 3.9 Consensus size: 26
94848102 CCAACACACC
94848112 AATATCACAACAAAGCTGCCAGTAAT
1 AATATCACAACAAAGCTGCCAGTAAT
* *
94848138 AATATCACAGCAAAGCTACCAGT-AT
1 AATATCACAACAAAGCTGCCAGTAAT
* * * * *
94848163 CAATAACGCAGCAAAGCTGCCAATAAC
1 -AATATCACAACAAAGCTGCCAGTAAT
* *
94848190 AATATCGCAACAAAACTGCCAGTA
1 AATATCACAACAAAGCTGCCAGTA
94848214 TTAGTATATG
Statistics
Matches: 63, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
25 2 0.03
26 60 0.95
27 1 0.02
ACGTcount: A:0.45, C:0.25, G:0.13, T:0.17
Consensus pattern (26 bp):
AATATCACAACAAAGCTGCCAGTAAT
Found at i:94857856 original size:42 final size:42
Alignment explanation
Indices: 94857785--94857884 Score: 114
Period size: 42 Copynumber: 2.4 Consensus size: 42
94857775 TATGATTTAT
*
94857785 GTGTAAGACCATGTCTAGGACATCAGCATC-ATATTTGATTTC
1 GTGTAAGACCATGTCTAGGACATCAGCATCGATATTT-ATTAC
* * *
94857827 GTGTAAGACCCTGTCTAGGATAGT-GGCATCGATATTTATTAC
1 GTGTAAGACCATGTCTAGGACA-TCAGCATCGATATTTATTAC
* *
94857869 ATGTAAGACCACGTCT
1 GTGTAAGACCATGTCT
94857885 GGAACGTTGG
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
42 42 0.86
43 7 0.14
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (42 bp):
GTGTAAGACCATGTCTAGGACATCAGCATCGATATTTATTAC
Found at i:94860315 original size:28 final size:28
Alignment explanation
Indices: 94860282--94860336 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
94860272 TTCGAATGGT
94860282 TTGAATGTTGATGTATGTTGAGAATTTA
1 TTGAATGTTGATGTATGTTGAGAATTTA
94860310 TTGAATGTTGATGTATGTTGAGAATTT
1 TTGAATGTTGATGTATGTTGAGAATTT
94860337 GTGGTCTGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.27, C:0.00, G:0.25, T:0.47
Consensus pattern (28 bp):
TTGAATGTTGATGTATGTTGAGAATTTA
Found at i:94865462 original size:35 final size:33
Alignment explanation
Indices: 94865403--94865469 Score: 91
Period size: 35 Copynumber: 2.0 Consensus size: 33
94865393 ATATATGTAC
*
94865403 AAATAATATATAATATGTACAAATAATTAATAAA
1 AAATAATAGATAATATGTACAAATAA-TAATAAA
94865437 AAATATATAGATAATAATGTA-AAATAATAATAA
1 AAATA-ATAGATAAT-ATGTACAAATAATAATAA
94865470 TTTCTGTAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
34 11 0.37
35 14 0.47
36 5 0.17
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.31
Consensus pattern (33 bp):
AAATAATAGATAATATGTACAAATAATAATAAA
Found at i:94866940 original size:21 final size:21
Alignment explanation
Indices: 94866914--94866966 Score: 106
Period size: 21 Copynumber: 2.5 Consensus size: 21
94866904 ATCGGACAAC
94866914 GCATTGATGGCACGCCAGTGT
1 GCATTGATGGCACGCCAGTGT
94866935 GCATTGATGGCACGCCAGTGT
1 GCATTGATGGCACGCCAGTGT
94866956 GCATTGATGGC
1 GCATTGATGGC
94866967 CTCGATTTGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.19, C:0.23, G:0.34, T:0.25
Consensus pattern (21 bp):
GCATTGATGGCACGCCAGTGT
Found at i:94869069 original size:26 final size:26
Alignment explanation
Indices: 94869040--94869147 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
94869030 TGGTACAAAT
94869040 TGATAATGGATTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
94869066 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
94869092 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
94869118 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
94869144 TGAT
1 TGAT
94869148 GGGCATTTCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:94870770 original size:27 final size:27
Alignment explanation
Indices: 94870731--94870895 Score: 179
Period size: 27 Copynumber: 6.1 Consensus size: 27
94870721 GGAAGTGTCT
*
94870731 TGGTGGCTATGCCACAAATATCTGATC
1 TGGTGGCTCTGCCACAAATATCTGATC
* *
94870758 TGGTGGCTCTGCCACATATATCTGTTC
1 TGGTGGCTCTGCCACAAATATCTGATC
* *
94870785 TGGTGGCTCTGCCACGATTATCTGATC
1 TGGTGGCTCTGCCACAAATATCTGATC
* * *
94870812 TGGTGGCTCTGGCACATATATCTGTTC
1 TGGTGGCTCTGCCACAAATATCTGATC
* * *
94870839 TGGTGGCTCTGCCACGATTATTTGTATC
1 TGGTGGCTCTGCCACAAATATCTG-ATC
* * * *
94870867 TGGTGACTCTGTCAC-ATTATCTGTTC
1 TGGTGGCTCTGCCACAAATATCTGATC
94870893 TGG
1 TGG
94870896 CAGCCATGCT
Statistics
Matches: 115, Mismatches: 22, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
26 5 0.04
27 95 0.83
28 15 0.13
ACGTcount: A:0.16, C:0.23, G:0.24, T:0.36
Consensus pattern (27 bp):
TGGTGGCTCTGCCACAAATATCTGATC
Found at i:94870813 original size:54 final size:54
Alignment explanation
Indices: 94870731--94870895 Score: 251
Period size: 54 Copynumber: 3.1 Consensus size: 54
94870721 GGAAGTGTCT
* * *
94870731 TGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTTC
1 TGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTC
*
94870785 TGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGGCACATATATCTGTTC
1 TGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTC
* * *
94870839 TGGTGGCTCTGCCACGATTATTTGTATCTGGTGACTCTGTCACAT-TATCTGTTC
1 TGGTGGCTCTGCCACGATTATCTG-ATCTGGTGGCTCTGCCACATATATCTGTTC
94870893 TGG
1 TGG
94870896 CAGCCATGCT
Statistics
Matches: 103, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
54 85 0.83
55 18 0.17
ACGTcount: A:0.16, C:0.23, G:0.24, T:0.36
Consensus pattern (54 bp):
TGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTC
Found at i:94870886 original size:81 final size:81
Alignment explanation
Indices: 94870731--94870895 Score: 226
Period size: 81 Copynumber: 2.0 Consensus size: 81
94870721 GGAAGTGTCT
*
94870731 TGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTG
1 TGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGACTCTG
94870796 CCACGATTATCTGATC
66 CCACGATTATCTGATC
* * * * *
94870812 TGGTGGCTCTGGCACATATATCTGTTCTGGTGGCTCTGCCACGAT-TATTTGTATCTGGTGACTC
1 TGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCAC-ATATATCTGT-TCTGGTGACTC
* *
94870876 TGTCAC-ATTATCTGTTC
64 TGCCACGATTATCTGATC
94870893 TGG
1 TGG
94870896 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
81 57 0.77
82 17 0.23
ACGTcount: A:0.16, C:0.23, G:0.24, T:0.36
Consensus pattern (81 bp):
TGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGACTCTG
CCACGATTATCTGATC
Found at i:94885384 original size:16 final size:16
Alignment explanation
Indices: 94885360--94885403 Score: 54
Period size: 16 Copynumber: 2.7 Consensus size: 16
94885350 GAATGCTCGT
94885360 GAAAAAAAA-AAGAAAA
1 GAAAAAAAATAA-AAAA
*
94885376 GAAATAAAATAAAAAA
1 GAAAAAAAATAAAAAA
94885392 GAAAAAGAAATA
1 GAAAAA-AAATA
94885404 GCATATGTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 17 0.71
17 7 0.29
ACGTcount: A:0.82, C:0.00, G:0.11, T:0.07
Consensus pattern (16 bp):
GAAAAAAAATAAAAAA
Found at i:94887117 original size:32 final size:34
Alignment explanation
Indices: 94887081--94887145 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 34
94887071 TAACAGTGGT
*
94887081 ACTGGGCCAGAG-CCCTT-TTCAGATTACAATAA
1 ACTGGGCCAGAGCCCCTTATTCAGATAACAATAA
**
94887113 ACTGGGCCTTAGCCCCTTATTCAGATAACAATA
1 ACTGGGCCAGAGCCCCTTATTCAGATAACAATA
94887146 TGGCCCATAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 10 0.36
33 5 0.18
34 13 0.46
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (34 bp):
ACTGGGCCAGAGCCCCTTATTCAGATAACAATAA
Found at i:94889017 original size:26 final size:26
Alignment explanation
Indices: 94888986--94889093 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
94888976 TGAAATGCCC
94888986 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
94889012 ATCATGGAACATTTACCT-AACCTATT
1 ATCATGGAACATTTACCTAAACC-ATT
* *
94889038 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
94889064 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
94889090 ATCA
1 ATCA
94889094 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
25 4 0.05
26 69 0.91
27 3 0.04
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:94891199 original size:46 final size:46
Alignment explanation
Indices: 94891149--94891324 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
94891139 TGATTGAGCA
94891149 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
94891195 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
94891240 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
94891288 -CCTGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
94891325 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 60 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:94891305 original size:93 final size:93
Alignment explanation
Indices: 94891146--94891317 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
94891136 GGATGATTGA
* *
94891146 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGT
94891211 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
94891239 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCATTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCATTGAG
94891303 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
94891318 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:94894562 original size:15 final size:15
Alignment explanation
Indices: 94894533--94894571 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
94894523 ACTTATTTTA
*
94894533 TTTAATTT-CATTAG
1 TTTAATTTAAATTAG
94894547 TTTAATTTAAATTAG
1 TTTAATTTAAATTAG
94894562 TTTAATTTAA
1 TTTAATTTAA
94894572 TTTCTACTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 8 0.35
15 15 0.65
ACGTcount: A:0.36, C:0.03, G:0.05, T:0.56
Consensus pattern (15 bp):
TTTAATTTAAATTAG
Found at i:94903023 original size:16 final size:16
Alignment explanation
Indices: 94903002--94903033 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
94902992 CCTATTTGCA
94903002 AATTGAATTAATTAAC
1 AATTGAATTAATTAAC
*
94903018 AATTGAATTAGTTAAC
1 AATTGAATTAATTAAC
94903034 CACATGGCCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.06, G:0.09, T:0.38
Consensus pattern (16 bp):
AATTGAATTAATTAAC
Found at i:94909550 original size:57 final size:57
Alignment explanation
Indices: 94909462--94909571 Score: 134
Period size: 57 Copynumber: 1.9 Consensus size: 57
94909452 TGATATAATA
* *
94909462 CCTCTCGAGCATACATTGTAATTAGGGTTTAGCCTGGACTAGTAATCCTAGTTAAGCT
1 CCTCTCGAGCATACATTGTAATAAGGATTTAGCCTGGACTAGTAATCCT-GTTAAGCT
* * * *
94909520 CCTCT-GAGCATACGTTGT-ATAAAGGATTTAGCTTGGATTGGTAATCCTGTTA
1 CCTCTCGAGCATACATTGTAAT-AAGGATTTAGCCTGGACTAGTAATCCTGTTA
94909572 TACGATATGT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
56 6 0.13
57 34 0.76
58 5 0.11
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.35
Consensus pattern (57 bp):
CCTCTCGAGCATACATTGTAATAAGGATTTAGCCTGGACTAGTAATCCTGTTAAGCT
Found at i:94919915 original size:31 final size:31
Alignment explanation
Indices: 94919880--94919943 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
94919870 ATATTCAAGA
94919880 ATCTATACTTACCAAAATACCATATGTACAT
1 ATCTATACTTACCAAAATACCATATGTACAT
94919911 ATCTATACTTACCAAAATACCATATGTACAT
1 ATCTATACTTACCAAAATACCATATGTACAT
94919942 AT
1 AT
94919944 AAGCATGTTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.42, C:0.22, G:0.03, T:0.33
Consensus pattern (31 bp):
ATCTATACTTACCAAAATACCATATGTACAT
Found at i:94920762 original size:25 final size:25
Alignment explanation
Indices: 94920679--94920762 Score: 71
Period size: 25 Copynumber: 3.4 Consensus size: 25
94920669 GCACTCTCTC
* **
94920679 GAGCCATATAATGAGAAGCTCATGT
1 GAGCCATATAATGGGAAGCTCATAA
* * * * *
94920704 GAGTCATGTAACGGGAAGCTTATCCA
1 GAGCCATATAATGGGAAGCTCAT-AA
*
94920730 G-GCTATATAATGGGAAGCTCATAA
1 GAGCCATATAATGGGAAGCTCATAA
94920754 GAGCCATAT
1 GAGCCATAT
94920763 TCAGGAAGCT
Statistics
Matches: 43, Mismatches: 14, Indels: 4
0.70 0.23 0.07
Matches are distributed among these distances:
24 2 0.05
25 40 0.93
26 1 0.02
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.24
Consensus pattern (25 bp):
GAGCCATATAATGGGAAGCTCATAA
Found at i:94920806 original size:24 final size:25
Alignment explanation
Indices: 94920779--94920937 Score: 85
Period size: 25 Copynumber: 6.4 Consensus size: 25
94920769 AGCTCGTGTA
* *
94920779 AGCCAATAA-CGGGTAGCTCCAAAG
1 AGCCAATAATCAGGAAGCTCCAAAG
** *
94920803 AGCCGTTAATCAGGAAGCTCCAAAT
1 AGCCAATAATCAGGAAGCTCCAAAG
* *
94920828 AGCCAA-ATATCAGGAAG-TTCAAGTG
1 AGCCAATA-ATCAGGAAGCTCCAA-AG
* * * *
94920853 AGCC-AT-ATCTGGAAGTTCTAGAG
1 AGCCAATAATCAGGAAGCTCCAAAG
* *
94920876 AGCCATTAATCAAGAAGCTCACAAAG
1 AGCCAATAATCAGGAAGCTC-CAAAG
** * *
94920902 AGCCTTTAATCGGGAAGCTCACGAAG
1 AGCCAATAATCAGGAAGCTC-CAAAG
94920928 AGCCATATAA
1 AGCCA-ATAA
94920938 CGAGATGCTC
Statistics
Matches: 99, Mismatches: 27, Indels: 15
0.70 0.19 0.11
Matches are distributed among these distances:
23 13 0.13
24 16 0.16
25 38 0.38
26 29 0.29
27 3 0.03
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.19
Consensus pattern (25 bp):
AGCCAATAATCAGGAAGCTCCAAAG
Found at i:94920866 original size:23 final size:23
Alignment explanation
Indices: 94920834--94920881 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
94920824 AAATAGCCAA
*
94920834 ATATCAGGAAGTTCAAGTGAGCC
1 ATATCAGGAAGTTCAAGAGAGCC
* *
94920857 ATATCTGGAAGTTCTAGAGAGCC
1 ATATCAGGAAGTTCAAGAGAGCC
94920880 AT
1 AT
94920882 TAATCAAGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (23 bp):
ATATCAGGAAGTTCAAGAGAGCC
Found at i:94920947 original size:26 final size:26
Alignment explanation
Indices: 94920874--94920948 Score: 89
Period size: 26 Copynumber: 2.9 Consensus size: 26
94920864 GAAGTTCTAG
*
94920874 AGAGCCATTAATCAAGAAGCTCACAA
1 AGAGCCATTAATCGAGAAGCTCACAA
* * *
94920900 AGAGCCTTTAATCGGGAAGCTCACGA
1 AGAGCCATTAATCGAGAAGCTCACAA
*
94920926 AGAGCCATATAA-CGAGATGCTCA
1 AGAGCCAT-TAATCGAGAAGCTCA
94920949 TAAGAGCTGT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 38 0.93
27 3 0.07
ACGTcount: A:0.39, C:0.23, G:0.21, T:0.17
Consensus pattern (26 bp):
AGAGCCATTAATCGAGAAGCTCACAA
Found at i:94923788 original size:19 final size:20
Alignment explanation
Indices: 94923764--94923813 Score: 66
Period size: 19 Copynumber: 2.5 Consensus size: 20
94923754 CGTGTGACCC
94923764 TTTTTTTCAAAATTTTC-AA
1 TTTTTTTCAAAATTTTCTAA
* *
94923783 TTTTTTCCAAAATTTTCTGA
1 TTTTTTTCAAAATTTTCTAA
*
94923803 TTTGTTTCAAA
1 TTTTTTTCAAA
94923814 TTGATCCCAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 16 0.62
20 10 0.38
ACGTcount: A:0.28, C:0.12, G:0.04, T:0.56
Consensus pattern (20 bp):
TTTTTTTCAAAATTTTCTAA
Found at i:94927881 original size:54 final size:54
Alignment explanation
Indices: 94927690--94927897 Score: 188
Period size: 54 Copynumber: 3.9 Consensus size: 54
94927680 TTTCCTTTTT
* * * * *
94927690 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* * * ** * *
94927743 GAACTCACCAATGTCAT-ACTTTAGCATGGTCTTACATGGGA-CCTTTGTCTTCTA
1 GAACTCACCAATGCCATGCCTTGA-CATGGTCTTACATGATATCC-TTGCCTTATA
* * * *
94927797 GTAACTCATCAATGCGATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* * * *
94927852 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATCATATCCTT
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTT
94927898 ATCTTACCAA
Statistics
Matches: 124, Mismatches: 25, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
52 6 0.05
53 36 0.29
54 40 0.32
55 36 0.29
56 6 0.05
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.37
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
Found at i:94927931 original size:47 final size:47
Alignment explanation
Indices: 94927876--94927997 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
94927866 CATGCCTTGG
** *
94927876 CATGGTCTTACATCATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
94927923 CATGGTCTTACATGGTATCCTTGTCTTACCAAGTGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
94927970 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
94927998 GTACCAATGC
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:94930045 original size:54 final size:54
Alignment explanation
Indices: 94929963--94930071 Score: 218
Period size: 54 Copynumber: 2.0 Consensus size: 54
94929953 TCCTTAGTTC
94929963 TTTGACAATAACGAAAAGGGTTTTAGAAAGAAAGATGATGAAGATGATAATGCT
1 TTTGACAATAACGAAAAGGGTTTTAGAAAGAAAGATGATGAAGATGATAATGCT
94930017 TTTGACAATAACGAAAAGGGTTTTAGAAAGAAAGATGATGAAGATGATAATGCT
1 TTTGACAATAACGAAAAGGGTTTTAGAAAGAAAGATGATGAAGATGATAATGCT
94930071 T
1 T
94930072 CATTCTTTTC
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.44, C:0.06, G:0.24, T:0.27
Consensus pattern (54 bp):
TTTGACAATAACGAAAAGGGTTTTAGAAAGAAAGATGATGAAGATGATAATGCT
Found at i:94933322 original size:25 final size:24
Alignment explanation
Indices: 94933269--94933329 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 24
94933259 ATAGCTCAAA
*
94933269 CGAGCAATCCTGTTATAAGCCCTCT
1 CGAGC-ATCCTGTTATAAGCCCTCG
*
94933294 CGAGCGTCCTGTTATATAGCTCCT-G
1 CGAGCATCCTGTTATA-AGC-CCTCG
94933319 CGAGCATCCTG
1 CGAGCATCCTG
94933330 ATCGGTAATG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
24 10 0.32
25 18 0.58
26 3 0.10
ACGTcount: A:0.20, C:0.31, G:0.21, T:0.28
Consensus pattern (24 bp):
CGAGCATCCTGTTATAAGCCCTCG
Found at i:94935783 original size:19 final size:20
Alignment explanation
Indices: 94935751--94935796 Score: 85
Period size: 19 Copynumber: 2.4 Consensus size: 20
94935741 CCAAAAATAA
94935751 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
94935771 TTTCTGG-AAATGATTTACT
1 TTTCTGGAAAATGATTTACT
94935790 TTTCTGG
1 TTTCTGG
94935797 TGTTTGGATG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 19 0.73
20 7 0.27
ACGTcount: A:0.24, C:0.11, G:0.17, T:0.48
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:94948885 original size:40 final size:40
Alignment explanation
Indices: 94948802--94948982 Score: 179
Period size: 40 Copynumber: 4.5 Consensus size: 40
94948792 AATCAAGCAT
** ** * *
94948802 CTTCGGGGTTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
94948840 CTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
94948880 CTTCGGGACTTAGCCCGGATTTAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
94948920 CTTC-GGATCTTAGTCCGGATGTAGTCACTTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAAATGC
*
94948961 CTTCGGGACTTAGCTCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
94948983 CATTCGAGTA
Statistics
Matches: 116, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
38 10 0.09
39 18 0.16
40 59 0.51
41 26 0.22
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:94959623 original size:15 final size:15
Alignment explanation
Indices: 94959599--94959635 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
94959589 TTACTACATT
*
94959599 CCGAGCTCGTTTCGA
1 CCGAGTTCGTTTCGA
94959614 CCGAGTTCGTTTCGA
1 CCGAGTTCGTTTCGA
94959629 CCGAGTT
1 CCGAGTT
94959636 ACGACATCCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.14, C:0.30, G:0.27, T:0.30
Consensus pattern (15 bp):
CCGAGTTCGTTTCGA
Found at i:94959765 original size:44 final size:44
Alignment explanation
Indices: 94959698--94959814 Score: 182
Period size: 44 Copynumber: 2.7 Consensus size: 44
94959688 CATGACATAG
*
94959698 GATTCCGATATACGTGTGAGAGTAAGACCATGGCATCGATATGT
1 GATTCCGATATATGTGTGAGAGTAAGACCATGGCATCGATATGT
* *
94959742 GATTCTGATATATGTGTGCGAGTAAGACCATGGCATCGATATGT
1 GATTCCGATATATGTGTGAGAGTAAGACCATGGCATCGATATGT
*
94959786 GATTCCAATATATGTGT-ATGAGTAAGACC
1 GATTCCGATATATGTGTGA-GAGTAAGACC
94959815 CTGTTGGGAC
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
44 66 1.00
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (44 bp):
GATTCCGATATATGTGTGAGAGTAAGACCATGGCATCGATATGT
Found at i:94970410 original size:39 final size:39
Alignment explanation
Indices: 94970356--94970627 Score: 436
Period size: 39 Copynumber: 7.0 Consensus size: 39
94970346 ATTATATTAT
* *
94970356 CAGCACAAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
94970395 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * *
94970434 CAGCACGAAGCCTGCGGGACTTTAGTCCGGATAGACTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
94970473 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
94970512 CAGCACGAAGCCTGCGGGACTTTAGCCCAGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
94970551 CCGCACGAAGCCTGCGGGACTTTAGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
94970590 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
94970628 TCAGTGTCTT
Statistics
Matches: 218, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 218 1.00
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.22
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:94973673 original size:39 final size:39
Alignment explanation
Indices: 94973621--94973790 Score: 202
Period size: 39 Copynumber: 4.3 Consensus size: 39
94973611 GGACTAAGAT
94973621 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAG-C
1 CCGAAGGCATTTGTGCGAGATACAAA-TCCGGGTTAAGTC
*
94973660 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATCCGGGTTAAGTC
* * *
94973700 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTT-AGTC
1 CCGAAGGCATTTGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
94973739 CCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATCCGGGTTAAGTC
94973778 CCGAAGGCATTTG
1 CCGAAGGCATTTG
94973791 AACGAGGAGC
Statistics
Matches: 114, Mismatches: 11, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
38 19 0.17
39 58 0.51
40 37 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACAAATCCGGGTTAAGTC
Done.