Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 284 of 349
Found at i:94973808 original size:78 final size:80
Alignment explanation
Indices: 94973648--94973823 Score: 191
Period size: 78 Copynumber: 2.2 Consensus size: 80
94973638 AGATACAAAT
* * *
94973648 TCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
94973712 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * *
94973727 TCCGGGTT-AGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
94973790 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
94973805 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
94973824 TACGTGATTT
Statistics
Matches: 81, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
77 5 0.06
78 60 0.74
79 16 0.20
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:94981520 original size:39 final size:40
Alignment explanation
Indices: 94981392--94981612 Score: 224
Period size: 39 Copynumber: 5.7 Consensus size: 40
94981382 TTGAATGCTG
* * *
94981392 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAA
*
94981432 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC--AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
*
94981470 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCGAGATACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * **
94981509 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAG-TTTTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * * *
94981548 TCCGGGTTATGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* *
94981587 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
94981613 AACGAGGAGC
Statistics
Matches: 156, Mismatches: 16, Indels: 18
0.82 0.08 0.09
Matches are distributed among these distances:
37 15 0.10
38 25 0.16
39 74 0.47
40 31 0.20
41 10 0.06
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:94981634 original size:78 final size:78
Alignment explanation
Indices: 94981468--94981645 Score: 205
Period size: 78 Copynumber: 2.3 Consensus size: 78
94981458 TGCGAGATAC
* * *
94981468 AATCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 AATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ***
94981533 CGTGCGAGTTTTA
66 CGAACGAGAGCTA
* * * *
94981546 AATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 AATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATT
*
94981611 TGAACGAGGAGCTA
66 CGAACGA-GAGCTA
* *
94981625 TATCC-GGTTAAATCCCGAAGG
1 AATCCGGGTTAAGTCCCGAAGG
94981646 TACGTGATTT
Statistics
Matches: 83, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 76 0.92
79 7 0.08
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (78 bp):
AATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGAGCTA
Found at i:94983477 original size:40 final size:39
Alignment explanation
Indices: 94983393--94983574 Score: 203
Period size: 40 Copynumber: 4.7 Consensus size: 39
94983383 GCTACTCGTT
* *
94983393 CAAATGCCTTC-GGACATAGCCCGG-TTATGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATA-GTAACTCGCA
* *
94983431 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-ATAGTAACTCGCA
*
94983471 CCAATGCCTTCGGG-CTTAGCCCGGAATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATAGTAACTCGCA
* * * *
94983509 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATAGTAAC-TCGCA
94983550 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
94983575 CATCATTCGA
Statistics
Matches: 125, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
37 2 0.02
38 33 0.26
39 31 0.25
40 45 0.36
41 14 0.11
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATAGTAACTCGCA
Found at i:94983491 original size:78 final size:78
Alignment explanation
Indices: 94983395--94983574 Score: 213
Period size: 78 Copynumber: 2.3 Consensus size: 78
94983385 TACTCGTTCA
* * *
94983395 AATGCCTTCGGACATAGCCCGG-TTATGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGAT
1 AATGCCTTCGGGCTTAGCCCGGAATA-GTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGAT
* *
94983458 TTAGTAAC-TCGCACC
64 ATAGTAACTTAGCA-C
**
94983473 AATGCCTTCGGGCTTAGCCCGGAATAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATAT
1 AATGCCTTCGGGCTTAGCCCGGAATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATAT
* *
94983538 GGTCACTTAGCAC
66 AGTAACTTAGCAC
*
94983551 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGG-CTTAGCCCGGA
94983575 CATCATTCGA
Statistics
Matches: 88, Mismatches: 10, Indels: 7
0.84 0.10 0.07
Matches are distributed among these distances:
77 3 0.03
78 68 0.77
79 17 0.19
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (78 bp):
AATGCCTTCGGGCTTAGCCCGGAATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATAT
AGTAACTTAGCAC
Found at i:94991594 original size:39 final size:40
Alignment explanation
Indices: 94991480--94991660 Score: 217
Period size: 40 Copynumber: 4.5 Consensus size: 40
94991470 GCTACTCGTT
* *
94991480 CAAATTCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
94991520 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
94991560 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
94991599 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
94991640 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
94991661 TGGACATCAT
Statistics
Matches: 122, Mismatches: 14, Indels: 10
0.84 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 74 0.61
41 13 0.11
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:94991624 original size:79 final size:80
Alignment explanation
Indices: 94991486--94991660 Score: 214
Period size: 79 Copynumber: 2.2 Consensus size: 80
94991476 CGTTCAAATT
* * *
94991486 CCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAG
* *
94991551 TAAC-TCGCACCAATG
66 TAACTTAGCA-CAAAG
**
94991566 CCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATAT
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATAT
* *
94991628 GGTCACTTAGCACAAAG
64 AGTAACTTAGCACAAAG
94991645 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
94991661 TGGACATCAT
Statistics
Matches: 82, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
78 4 0.05
79 59 0.72
80 19 0.23
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAG
TAACTTAGCACAAAG
Found at i:94997997 original size:39 final size:39
Alignment explanation
Indices: 94997940--94998249 Score: 487
Period size: 39 Copynumber: 8.0 Consensus size: 39
94997930 ATTATATTAT
* * *
94997940 CAGCACAAAGCCTACGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
94997979 CAGCACGAAGCTTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
94998018 CAGCACGAAGCCTGCGGGACTTT-GGCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
94998056 CAGCACGAAGCCTGCGGGACTTTAGTCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
94998095 CAGCACGAAGCCTGCGGGATTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
94998134 CAGCACGAAGCCTGCGGGACTTTAGCCCGAATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
94998173 CAGCACAAAGCCTGCGAGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
94998212 CAGCACGAAGCCTGCAGGACTTTAGCCCGGATACATTT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
94998250 TCAGTGTCTT
Statistics
Matches: 250, Mismatches: 20, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
38 37 0.15
39 213 0.85
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:94998102 original size:116 final size:117
Alignment explanation
Indices: 94997940--94998249 Score: 505
Period size: 116 Copynumber: 2.7 Consensus size: 117
94997930 ATTATATTAT
* * *
94997940 CAGCACAAAGCCTACGGGACTTTGGCCCGGATACATTTCCAGCACGAAGCTTGCGGGACTTTGGC
1 CAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGC
* *
94998005 CCGGATACATTTCCAGCACGAAGCCTGCGGGACTTT-GGCCGGATACATTTC
66 CCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGAATACATTTC
* * *
94998056 CAGCACGAAGCCTGCGGGACTTTAGTCCGGATACATTTCCAGCACGAAGCCTGCGGGATTTTGGC
1 CAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGC
*
94998121 CCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGAATATATTTC
66 CCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGAATACATTTC
* * *
94998173 CAGCACAAAGCCTGCGAGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCAGGACTTTAGC
1 CAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGC
94998238 CCGGATACATTT
66 CCGGATACATTT
94998250 TCAGTGTCTT
Statistics
Matches: 178, Mismatches: 15, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
116 95 0.53
117 83 0.47
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (117 bp):
CAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTGGC
CCGGATACATTTCCAGCACGAAGCCTGCGGGACTTTAGCCCGAATACATTTC
Found at i:94999666 original size:29 final size:29
Alignment explanation
Indices: 94999624--94999682 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
94999614 GACGATATGT
94999624 ATGTTAATAAAAGGTTTTAATTTGGGCAA
1 ATGTTAATAAAAGGTTTTAATTTGGGCAA
94999653 ATGTTAATAAAAGGTTTTAATTTGGGCAA
1 ATGTTAATAAAAGGTTTTAATTTGGGCAA
94999682 A
1 A
94999683 ATCTTATGGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.39, C:0.03, G:0.20, T:0.37
Consensus pattern (29 bp):
ATGTTAATAAAAGGTTTTAATTTGGGCAA
Found at i:95005911 original size:28 final size:30
Alignment explanation
Indices: 95005877--95005935 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
95005867 GCTGAATTTT
95005877 GATATAAA-T-TTTTAAAAGAAAAGGAAAA
1 GATATAAATTGTTTTAAAAGAAAAGGAAAA
95005905 GATATAAATTGTTTTAAAAGAAAAGGAAAA
1 GATATAAATTGTTTTAAAAGAAAAGGAAAA
95005935 G
1 G
95005936 GACAGTAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
28 8 0.28
29 1 0.03
30 20 0.69
ACGTcount: A:0.58, C:0.00, G:0.17, T:0.25
Consensus pattern (30 bp):
GATATAAATTGTTTTAAAAGAAAAGGAAAA
Found at i:95012936 original size:29 final size:29
Alignment explanation
Indices: 95012873--95012940 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
95012863 TAATCAACCG
95012873 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
95012902 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
95012931 CGCACACTTA
1 CGCACACTTA
95012941 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:95013053 original size:174 final size:174
Alignment explanation
Indices: 95012762--95013089 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
95012752 AACTCAAGGT
* *
95012762 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
95012827 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
95012892 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
95012936 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
95013001 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
95013066 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
95013090 TGTACAATTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:95013081 original size:29 final size:30
Alignment explanation
Indices: 95013042--95013120 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
95013032 CTTAATAATC
95013042 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
95013072 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
95013101 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
95013121 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:95015064 original size:27 final size:27
Alignment explanation
Indices: 95015016--95015174 Score: 166
Period size: 27 Copynumber: 5.9 Consensus size: 27
95015006 ATGAGGCTGC
* *
95015016 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
95015043 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
95015069 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * *
95015096 CAGATAATTGTAGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
*
95015123 GAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
95015150 CAGATAATTGTGGCATAGCCGCCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
95015175 GACGCTTCCT
Statistics
Matches: 112, Mismatches: 12, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
26 10 0.09
27 97 0.87
28 5 0.04
ACGTcount: A:0.34, C:0.21, G:0.26, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:95015175 original size:54 final size:54
Alignment explanation
Indices: 95015034--95015177 Score: 227
Period size: 54 Copynumber: 2.7 Consensus size: 54
95015024 GTGACGAAGT
* *
95015034 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
* *
95015088 CACCAGATCAGATAATTGTAGCATAGCCACCAGGAGAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
*
95015142 CACCAGATCAGATAATTGTGGCATAGCCGCCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
95015178 GCTTCCTTCA
Statistics
Matches: 82, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
53 5 0.06
54 77 0.94
ACGTcount: A:0.34, C:0.23, G:0.26, T:0.17
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:95016820 original size:26 final size:26
Alignment explanation
Indices: 95016789--95016896 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
95016779 TGAAATGCCC
95016789 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
95016815 ATCATGGAACATTTACCT-AACTCATT
1 ATCATGGAACATTTACCTAAAC-CATT
* *
95016841 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
95016867 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
95016893 ATCA
1 ATCA
95016897 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
25 3 0.04
26 71 0.93
27 2 0.03
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:95022183 original size:27 final size:27
Alignment explanation
Indices: 95022137--95022293 Score: 160
Period size: 27 Copynumber: 5.8 Consensus size: 27
95022127 GAGGCTGCCT
* * *
95022137 GATATTGTGACAAAGTCACCAGATACA
1 GATATTGTGGCAGAGCCACCAGATACA
*
95022164 GATATTGTGGCAGAGCCACCGGA-ACA
1 GATATTGTGGCAGAGCCACCAGATACA
*
95022190 GATATATGTGGCAGAGCCACCATAT-CA
1 GATAT-TGTGGCAGAGCCACCAGATACA
* *
95022217 GATAATTGTGGCATAGCCACCAG-GACA
1 GAT-ATTGTGGCAGAGCCACCAGATACA
*
95022244 GATATATGTGGCAGAGCCACCAGAT-TA
1 GATAT-TGTGGCAGAGCCACCAGATACA
* *
95022271 GATAATTGTGGCATAGCCGCCAG
1 GAT-ATTGTGGCAGAGCCACCAG
95022294 GACGCTTCCT
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
26 10 0.09
27 95 0.87
28 4 0.04
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.20
Consensus pattern (27 bp):
GATATTGTGGCAGAGCCACCAGATACA
Found at i:95022226 original size:54 final size:54
Alignment explanation
Indices: 95022153--95022296 Score: 220
Period size: 54 Copynumber: 2.7 Consensus size: 54
95022143 GTGACAAAGT
*
95022153 CACCAGATACAGAT-ATTGTGGCAGAGCCACC-GGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGG-ACAGATATATGTGGCAGAGC
*
95022207 CACCATATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
* *
95022261 CACCAGATTAGATAATTGTGGCATAGCCGCCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
95022297 GCTTCCTCCA
Statistics
Matches: 83, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
53 5 0.06
54 76 0.92
55 2 0.02
ACGTcount: A:0.33, C:0.23, G:0.26, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:95022725 original size:8 final size:8
Alignment explanation
Indices: 95022709--95022738 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
95022699 CTCAAAATAC
95022709 CGGCTTTT
1 CGGCTTTT
*
95022717 CGGCATTT
1 CGGCTTTT
95022725 CGGCTTTT
1 CGGCTTTT
95022733 CGGCTT
1 CGGCTT
95022739 GTGCCGATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.03, C:0.27, G:0.27, T:0.43
Consensus pattern (8 bp):
CGGCTTTT
Found at i:95025865 original size:38 final size:38
Alignment explanation
Indices: 95025813--95025906 Score: 152
Period size: 38 Copynumber: 2.5 Consensus size: 38
95025803 TCAATATATG
** *
95025813 TAACCGTGACATATCCACTTAGCACCACGTTACATGTT
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGCT
*
95025851 TAACCGTGGTATATCCACTTAGCACTACGTTACATGCT
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGCT
95025889 TAACCGTGGTATATCCAC
1 TAACCGTGGTATATCCAC
95025907 AAATTCAAGT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 52 1.00
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.30
Consensus pattern (38 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTACATGCT
Found at i:95027279 original size:26 final size:25
Alignment explanation
Indices: 95027250--95027302 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 25
95027240 CTTATGAGTG
*
95027250 TCCTGA-TATATGGCTCTTCGTGAGCT
1 TCCTGATTA-ATGGCTCTCCG-GAGCT
95027276 TCCTGATTAATGGCTCTCCGGAGCT
1 TCCTGATTAATGGCTCTCCGGAGCT
95027301 TC
1 TC
95027303 TCGATATGGC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 7 0.28
26 16 0.64
27 2 0.08
ACGTcount: A:0.15, C:0.26, G:0.23, T:0.36
Consensus pattern (25 bp):
TCCTGATTAATGGCTCTCCGGAGCT
Found at i:95032989 original size:15 final size:16
Alignment explanation
Indices: 95032966--95033001 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
95032956 ATGTGAATAA
95032966 TATTATTAAAA-TTAT
1 TATTATTAAAATTTAT
*
95032981 TATTTTTAAAATTTAT
1 TATTATTAAAATTTAT
95032997 TATTA
1 TATTA
95033002 AAATAAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
TATTATTAAAATTTAT
Found at i:95032998 original size:16 final size:15
Alignment explanation
Indices: 95032966--95033005 Score: 57
Period size: 13 Copynumber: 2.8 Consensus size: 15
95032956 ATGTGAATAA
95032966 TATTATTAAAATTAT
1 TATTATTAAAATTAT
*
95032981 TATTTTTAAAA-T-T
1 TATTATTAAAATTAT
95032994 TATTATTAAAAT
1 TATTATTAAAAT
95033006 AAAATTGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
13 11 0.50
14 1 0.05
15 10 0.45
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
TATTATTAAAATTAT
Found at i:95033053 original size:22 final size:22
Alignment explanation
Indices: 95033013--95033068 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
95033003 AATAAAATTG
*
95033013 AAATATTAAA-TA-ATTTATTA
1 AAATAATAAATTATATTTATTA
95033033 AAATAATAAATTATATTTATTA
1 AAATAATAAATTATATTTATTA
* * *
95033055 TATTAATAATTTAT
1 AAATAATAAATTAT
95033069 TATAAGACTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 9 0.30
21 2 0.07
22 19 0.63
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AAATAATAAATTATATTTATTA
Found at i:95034456 original size:43 final size:43
Alignment explanation
Indices: 95034358--95034477 Score: 127
Period size: 43 Copynumber: 2.8 Consensus size: 43
95034348 ATCAAGACGT
* ** * *
95034358 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTGA
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCAACGTAATCA
*
95034401 GATTACGAGTAAGACCATGTCTGGGACATTGGCAACGTTAATCA
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCAACG-TAATCA
* * *
95034445 TG-TT-CGTGTAAGACCCTGTCTAGGACAGTGGCA
1 -GATTACGTGTAAGACCATGTCTGGGACATTGGCA
95034478 TCGATATGTG
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
43 58 0.89
44 6 0.09
45 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCAACGTAATCA
Found at i:95038743 original size:57 final size:58
Alignment explanation
Indices: 95038639--95038777 Score: 140
Period size: 57 Copynumber: 2.4 Consensus size: 58
95038629 CGTATTACAG
* * ** * * *
95038639 GATTACCAGTCCAGGCTAAATACTTTATGTAATGTATGCTTAGGAGAGCTCA-ATTAC
1 GATTACCAGTCCAGGCTAAATCCTATATGTAACATATGCTGAGGAGAGATAACATTAC
*
95038696 GATTACCAGTCCAGGCTAAATCCTA-ATTGTAACATATGCTCGA-GAGAGATAACATTAG
1 GATTACCAGTCCAGGCTAAATCCTATA-TGTAACATATGCT-GAGGAGAGATAACATTAC
* **
95038754 GATTACCCGTCCAACCTAAATCCT
1 GATTACCAGTCCAGGCTAAATCCT
95038778 TTCTATAATG
Statistics
Matches: 68, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
56 1 0.01
57 41 0.60
58 26 0.38
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (58 bp):
GATTACCAGTCCAGGCTAAATCCTATATGTAACATATGCTGAGGAGAGATAACATTAC
Found at i:95040807 original size:42 final size:44
Alignment explanation
Indices: 95040703--95040859 Score: 117
Period size: 43 Copynumber: 3.6 Consensus size: 44
95040693 TGTGTTATCG
* * * * *
95040703 TGTAAGATCACATCTGGGAC-GTTGGCATTGATTTGTGATTTACA
1 TGTAAGACCATATCTGGGACAG-TGGCATCGATATATGATTTACA
* * *
95040747 TGTAAGACCATGTCTGGGACATTGGCATC-ATATATGATTT-CG
1 TGTAAGACCATATCTGGGACAGTGGCATCGATATATGATTTACA
* * * * *
95040789 TGTAAGACCCTATTTGGGATAGTGGCATCGATATTTCA-TTACA
1 TGTAAGACCATATCTGGGACAGTGGCATCGATATATGATTTACA
* **
95040832 CGTAAGACCACGTCTGGGAC-GTTGGCAT
1 TGTAAGACCATATCTGGGACAG-TGGCAT
95040860 TGTATGAGCT
Statistics
Matches: 87, Mismatches: 22, Indels: 9
0.74 0.19 0.08
Matches are distributed among these distances:
42 28 0.32
43 36 0.41
44 23 0.26
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.32
Consensus pattern (44 bp):
TGTAAGACCATATCTGGGACAGTGGCATCGATATATGATTTACA
Found at i:95044009 original size:43 final size:43
Alignment explanation
Indices: 95043948--95044030 Score: 166
Period size: 43 Copynumber: 1.9 Consensus size: 43
95043938 ACATGAATCA
95043948 CATCCATCATGAACTCAGACCTCTCAACGAGCTTGGATGCTTG
1 CATCCATCATGAACTCAGACCTCTCAACGAGCTTGGATGCTTG
95043991 CATCCATCATGAACTCAGACCTCTCAACGAGCTTGGATGC
1 CATCCATCATGAACTCAGACCTCTCAACGAGCTTGGATGC
95044031 CACATATCTC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (43 bp):
CATCCATCATGAACTCAGACCTCTCAACGAGCTTGGATGCTTG
Found at i:95045521 original size:27 final size:26
Alignment explanation
Indices: 95045483--95045667 Score: 185
Period size: 27 Copynumber: 6.9 Consensus size: 26
95045473 CATACATCAC
* * * *
95045483 ATAAGGGTAAAATAGTCATATTACCAT
1 ATAAGGGCAAAACAATCATTTTACC-T
*
95045510 AAAAGGGCAAAACAATCATTTTACC-
1 ATAAGGGCAAAACAATCATTTTACCT
*
95045535 ACCTAAGGGAAAAACAATCATTTTACCT
1 A--TAAGGGCAAAACAATCATTTTACCT
95045563 CATAAGGGCAAAACAATCATTTTACCCT
1 -ATAAGGGCAAAACAATCATTTTA-CCT
* *
95045591 ATAAGGCCAAAACAGTCATTTTACCT
1 ATAAGGGCAAAACAATCATTTTACCT
*
95045617 CATAAGGGTAAAA-AAGTCATTTTACCT
1 -ATAAGGGCAAAACAA-TCATTTTACCT
* *
95045644 CATAAGGTCAAAATAATCATTTTA
1 -ATAAGGGCAAAACAATCATTTTA
95045668 TTAATTAGGG
Statistics
Matches: 135, Mismatches: 15, Indels: 16
0.81 0.09 0.10
Matches are distributed among these distances:
25 1 0.01
26 4 0.03
27 124 0.92
28 5 0.04
29 1 0.01
ACGTcount: A:0.43, C:0.18, G:0.12, T:0.27
Consensus pattern (26 bp):
ATAAGGGCAAAACAATCATTTTACCT
Found at i:95045561 original size:54 final size:53
Alignment explanation
Indices: 95045512--95045667 Score: 206
Period size: 54 Copynumber: 2.9 Consensus size: 53
95045502 ATTACCATAA
* *
95045512 AAGGGCAAAACAATCATTTTACCACCTAAGGGAAAAACAATCATTTTACCTCAT
1 AAGGGCAAAACAATCATTTTACC-CATAAGGGCAAAACAATCATTTTACCTCAT
* *
95045566 AAGGGCAAAACAATCATTTTACCCTATAAGGCCAAAACAGTCATTTTACCTCAT
1 AAGGGCAAAACAATCATTTTACCC-ATAAGGGCAAAACAATCATTTTACCTCAT
* * *
95045620 AAGGGTAAAA-AAGTCATTTTACCTCATAAGGTCAAAATAATCATTTTA
1 AAGGGCAAAACAA-TCATTTTACC-CATAAGGGCAAAACAATCATTTTA
95045668 TTAATTAGGG
Statistics
Matches: 91, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
53 3 0.03
54 87 0.96
55 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.12, T:0.27
Consensus pattern (53 bp):
AAGGGCAAAACAATCATTTTACCCATAAGGGCAAAACAATCATTTTACCTCAT
Found at i:95045623 original size:81 final size:81
Alignment explanation
Indices: 95045482--95045667 Score: 248
Period size: 81 Copynumber: 2.3 Consensus size: 81
95045472 ACATACATCA
* * * * *
95045482 CATAAGGGTAAAATAGTCATATTACCATAAAAGGGCAAAACAATCATTTTACCACCTAAGGG-AA
1 CATAAGGGCAAAATAATCATTTTACCATAAAAGGCCAAAACAATCATTTTACCACATAAGGGTAA
95045546 AAACAATCATTTTACCT
66 AAA-AATCATTTTACCT
* * * * *
95045563 CATAAGGGCAAAACAATCATTTTACCCTATAAGGCCAAAACAGTCATTTTACCTCATAAGGGTAA
1 CATAAGGGCAAAATAATCATTTTACCATAAAAGGCCAAAACAATCATTTTACCACATAAGGGTAA
*
95045628 AAAAGTCATTTTACCT
66 AAAAATCATTTTACCT
*
95045644 CATAAGGTCAAAATAATCATTTTA
1 CATAAGGGCAAAATAATCATTTTA
95045668 TTAATTAGGG
Statistics
Matches: 91, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
81 86 0.95
82 5 0.05
ACGTcount: A:0.42, C:0.19, G:0.12, T:0.27
Consensus pattern (81 bp):
CATAAGGGCAAAATAATCATTTTACCATAAAAGGCCAAAACAATCATTTTACCACATAAGGGTAA
AAAAATCATTTTACCT
Found at i:95048953 original size:18 final size:18
Alignment explanation
Indices: 95048926--95048969 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
95048916 GGCCCTTTCA
95048926 AGTAACAGTAAACAGTAC
1 AGTAACAGTAAACAGTAC
* *
95048944 AGTAATAGTAAACAGTGC
1 AGTAACAGTAAACAGTAC
95048962 AGTAACAG
1 AGTAACAG
95048970 AAAATAGTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.48, C:0.14, G:0.20, T:0.18
Consensus pattern (18 bp):
AGTAACAGTAAACAGTAC
Found at i:95049332 original size:27 final size:28
Alignment explanation
Indices: 95049293--95049556 Score: 154
Period size: 27 Copynumber: 9.7 Consensus size: 28
95049283 TACATCACAC
* **
95049293 AGGGATAAAACAATCATCTTACCGTA-AA
1 AGGGA-AAAACAATCATTTTACCACATAA
95049321 AGGGAAAAACAATCATTTTACCACATAA
1 AGGGAAAAACAATCATTTTACCACATAA
* *
95049349 AGGGCAAAACAATCATTTTACCTCAT-A
1 AGGGAAAAACAATCATTTTACCACATAA
* * * *
95049376 AGAGCAAAATAGTCATTTTACC-C-TATA
1 AGGGAAAAACAATCATTTTACCACATA-A
* *
95049403 AGGGCAAAACAGTCATTTTACC-C-TATA
1 AGGGAAAAACAATCATTTTACCACATA-A
* * * *
95049430 AGGGCAAAATAGTCATTTTACCTCAT-A
1 AGGGAAAAACAATCATTTTACCACATAA
* * * *
95049457 AGGGTAAAGCATTCATTTTACCCCAT-A
1 AGGGAAAAACAATCATTTTACCACATAA
* * * **
95049484 AGGGCAAAATAGTCATTTTACCTTAT-A
1 AGGGAAAAACAATCATTTTACCACATAA
* * * *
95049511 AGGGAAAAATAGTCTTTTTACCTCAT-A
1 AGGGAAAAACAATCATTTTACCACATAA
* *
95049538 AGGGCAAAAC-GTCATTTTA
1 AGGGAAAAACAATCATTTTA
95049557 TCAATTAGAG
Statistics
Matches: 203, Mismatches: 28, Indels: 12
0.84 0.12 0.05
Matches are distributed among these distances:
25 1 0.00
26 9 0.04
27 160 0.79
28 32 0.16
29 1 0.00
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.28
Consensus pattern (28 bp):
AGGGAAAAACAATCATTTTACCACATAA
Found at i:95049419 original size:54 final size:54
Alignment explanation
Indices: 95049333--95049556 Score: 285
Period size: 54 Copynumber: 4.1 Consensus size: 54
95049323 GGAAAAACAA
* *
95049333 TCATTTTACCAC-ATAAAGGGCAAAACAATCATTTTACCTCATAAGAGCAAAATAG
1 TCATTTTACC-CTAT-AAGGGCAAAACAGTCATTTTACCTCATAAGGGCAAAATAG
95049388 TCATTTTACCCTATAAGGGCAAAACAGTCATTTTACC-CTATAAGGGCAAAATAG
1 TCATTTTACCCTATAAGGGCAAAACAGTCATTTTACCTC-ATAAGGGCAAAATAG
* * * *
95049442 TCATTTTA-CCTCATAAGGGTAAAGCATTCATTTTACCCCATAAGGGCAAAATAG
1 TCATTTTACCCT-ATAAGGGCAAAACAGTCATTTTACCTCATAAGGGCAAAATAG
* * * * *
95049496 TCATTTTACCTTATAAGGGAAAAATAGTCTTTTTACCTCATAAGGGCAAAA-CG
1 TCATTTTACCCTATAAGGGCAAAACAGTCATTTTACCTCATAAGGGCAAAATAG
95049549 TCATTTTA
1 TCATTTTA
95049557 TCAATTAGAG
Statistics
Matches: 151, Mismatches: 13, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
53 13 0.09
54 123 0.81
55 15 0.10
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.30
Consensus pattern (54 bp):
TCATTTTACCCTATAAGGGCAAAACAGTCATTTTACCTCATAAGGGCAAAATAG
Found at i:95049457 original size:81 final size:80
Alignment explanation
Indices: 95049306--95049556 Score: 306
Period size: 81 Copynumber: 3.1 Consensus size: 80
95049296 GATAAAACAA
* * * * * * *
95049306 TCATCTTACCGTAAAAGGGAAAAACAATCATTTTACCAC-ATAAAGGGCAAAACAATCATTTTAC
1 TCATTTTACCCTATAAGGGCAAAACAGTCATTTTACC-CTAT-AAGGGCAAAATAGTCATTTTAC
*
95049370 CTCATAAGAGCAAAATAG
64 CTCATAAGGGCAAAA-AG
95049388 TCATTTTACCCTATAAGGGCAAAACAGTCATTTTACCCTATAAGGGCAAAATAGTCATTTTACCT
1 TCATTTTACCCTATAAGGGCAAAACAGTCATTTTACCCTATAAGGGCAAAATAGTCATTTTACCT
* * *
95049453 CATAAGGGTAAAGCAT
66 CATAAGGGCAAA-AAG
* * * * *
95049469 TCATTTTACCCCATAAGGGCAAAATAGTCATTTTACCTTATAAGGGAAAAATAGTCTTTTTACCT
1 TCATTTTACCCTATAAGGGCAAAACAGTCATTTTACCCTATAAGGGCAAAATAGTCATTTTACCT
*
95049534 CATAAGGGCAAAACG
66 CATAAGGGCAAAAAG
95049549 TCATTTTA
1 TCATTTTA
95049557 TCAATTAGAG
Statistics
Matches: 147, Mismatches: 20, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
80 8 0.05
81 105 0.71
82 34 0.23
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.29
Consensus pattern (80 bp):
TCATTTTACCCTATAAGGGCAAAACAGTCATTTTACCCTATAAGGGCAAAATAGTCATTTTACCT
CATAAGGGCAAAAAG
Found at i:95050240 original size:20 final size:19
Alignment explanation
Indices: 95050206--95050244 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
95050196 AGATAGCAAA
*
95050206 AAGAAAAATAAAATAAAAT
1 AAGAAAAAAAAAATAAAAT
95050225 AAGAAAATAAAAAATAAAAT
1 AAGAAAA-AAAAAATAAAAT
95050245 CCCTCTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.15
Consensus pattern (19 bp):
AAGAAAAAAAAAATAAAAT
Found at i:95057033 original size:13 final size:13
Alignment explanation
Indices: 95057015--95057039 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
95057005 TCAAACGATA
95057015 AAATTTTCACACG
1 AAATTTTCACACG
95057028 AAATTTTCACAC
1 AAATTTTCACAC
95057040 ATATAAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:95059804 original size:43 final size:43
Alignment explanation
Indices: 95059712--95059817 Score: 135
Period size: 42 Copynumber: 2.5 Consensus size: 43
95059702 GGTATAAATT
* *
95059712 TTTGATTTACGTGTAAGACCATGTCTAGGACATTGGCATCATA
1 TTTGATTTACGTGTAAGACCATATCTAGGACAGTGGCATCATA
* *
95059755 TATGATTT-CGTGTAAGACCCTATCTAGGACAGTGGCATCGATA
1 TTTGATTTACGTGTAAGACCATATCTAGGACAGTGGCATC-ATA
**
95059798 TTTGA-TTACAAGTAAGACCA
1 TTTGATTTACGTGTAAGACCA
95059818 CGTCTGGGAC
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 30 0.57
43 23 0.43
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (43 bp):
TTTGATTTACGTGTAAGACCATATCTAGGACAGTGGCATCATA
Found at i:95059834 original size:43 final size:42
Alignment explanation
Indices: 95059677--95059835 Score: 133
Period size: 43 Copynumber: 3.7 Consensus size: 42
95059667 TATGTGTTAT
* * * * *
95059677 CGTGTAAGACCACATTTGGGACGTTGGTATAAATTTTTGATTTA
1 CGTGTAAGACCACATCTAGGACGTTGGCAT-CATATTTGA-TTA
** * * *
95059721 CGTGTAAGACCATGTCTAGGACATTGGCATCATATATGATTT
1 CGTGTAAGACCACATCTAGGACGTTGGCATCATATTTGATTA
95059763 CGTGTAAGACC-CTATCTAGGACAG-TGGCATCGATATTTGATTA
1 CGTGTAAGACCAC-ATCTAGGAC-GTTGGCATC-ATATTTGATTA
** * *
95059806 CAAGTAAGACCACGTCTGGGACGTTGGCAT
1 CGTGTAAGACCACATCTAGGACGTTGGCAT
95059836 TGTATGAGCT
Statistics
Matches: 91, Mismatches: 19, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
42 29 0.32
43 37 0.41
44 25 0.27
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (42 bp):
CGTGTAAGACCACATCTAGGACGTTGGCATCATATTTGATTA
Found at i:95061935 original size:46 final size:48
Alignment explanation
Indices: 95061867--95061991 Score: 147
Period size: 46 Copynumber: 2.7 Consensus size: 48
95061857 GTATGTGAGC
*
95061867 CAGTGTAAGACGTGTCTGGGACATGCATCGGCCACATT-ATGA-G-G-G
1 CAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTGA-GACGAGAG
*
95061912 TCAGTGTAAGACATGTCTAGGACATGCATC-G--ACATTGAGACGAGAG
1 -CAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTGAGACGAGAG
*
95061958 CTAGTGTAAGACATGTTTGGGACATGCATCGGCC
1 C-AGTGTAAGACATGTCTGGGACATGCATCGGCC
95061992 TCGACATATA
Statistics
Matches: 67, Mismatches: 4, Indels: 13
0.80 0.05 0.15
Matches are distributed among these distances:
43 7 0.10
44 2 0.03
45 3 0.04
46 54 0.81
47 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.23
Consensus pattern (48 bp):
CAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTGAGACGAGAG
Found at i:95062139 original size:49 final size:49
Alignment explanation
Indices: 95062054--95062181 Score: 116
Period size: 49 Copynumber: 2.6 Consensus size: 49
95062044 TGTGTGTCAA
**
95062054 TGTAAGACCTGTCCAGGACATGGCATCGACACCGATAGATAAGAACT-AG
1 TGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATAA-AACTCAG
* * * * * *
95062103 TGTAAGACCTGTCTGGGACATGGCTTTGGC-CTCGATATATGAAAGTCAG
1 TGTAAGACCTGTCTGGGACATGGCATCGACAC-CGATAGATAAAACTCAG
* * **
95062152 TGTAATACCTGTTTGGGACACAGCATCGAC
1 TGTAAGACCTGTCTGGGACATGGCATCGAC
95062182 TTTAATGTAC
Statistics
Matches: 62, Mismatches: 15, Indels: 4
0.77 0.19 0.05
Matches are distributed among these distances:
48 4 0.06
49 58 0.94
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (49 bp):
TGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATAAAACTCAG
Found at i:95068474 original size:15 final size:16
Alignment explanation
Indices: 95068454--95068483 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
95068444 AAGGTCTTAT
95068454 AATCATAA-CTTACTC
1 AATCATAACCTTACTC
95068469 AATCATAACCTTACT
1 AATCATAACCTTACT
95068484 GAGGGTTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.40, C:0.27, G:0.00, T:0.33
Consensus pattern (16 bp):
AATCATAACCTTACTC
Found at i:95068794 original size:42 final size:40
Alignment explanation
Indices: 95068654--95068811 Score: 167
Period size: 42 Copynumber: 3.9 Consensus size: 40
95068644 TACCGTACCA
** * *
95068654 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATCA
1 ATGCCATATCCCAGATATGGTCTTACACATAGTCTC-TAT-T
* * *
95068696 ATGCCAATAGCCCAGCTATGGTCTTACACAAAGTCTC-A-T
1 ATGCC-ATATCCCAGATATGGTCTTACACATAGTCTCTATT
* *
95068735 ATGCCATATCCCAGATATAGTCTTACACGTAGTCTCATATT
1 ATGCCATATCCCAGATATGGTCTTACACATAGTCTC-TATT
*
95068776 GATGCCATATCCTAGATATGGTCTTACACATAGTCT
1 -ATGCCATATCCCAGATATGGTCTTACACATAGTCT
95068812 TAGTAACCCT
Statistics
Matches: 96, Mismatches: 15, Indels: 10
0.79 0.12 0.08
Matches are distributed among these distances:
38 26 0.27
39 5 0.05
40 1 0.01
41 2 0.02
42 37 0.39
43 25 0.26
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.32
Consensus pattern (40 bp):
ATGCCATATCCCAGATATGGTCTTACACATAGTCTCTATT
Found at i:95073607 original size:16 final size:16
Alignment explanation
Indices: 95073588--95073620 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
95073578 TTTCCCCAAT
95073588 TTTATTTTCATATGCA
1 TTTATTTTCATATGCA
*
95073604 TTTATTTTTATATGCA
1 TTTATTTTCATATGCA
95073620 T
1 T
95073621 ATTTAATCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.24, C:0.09, G:0.06, T:0.61
Consensus pattern (16 bp):
TTTATTTTCATATGCA
Found at i:95078876 original size:29 final size:29
Alignment explanation
Indices: 95078834--95078890 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
95078824 TTATAACTAG
95078834 GTCAATTACTTGGAGGCAAAGGAAGGGTA
1 GTCAATTACTTGGAGGCAAAGGAAGGGTA
95078863 GTCAATTACTTGGAGGCAAAGGAAGGGT
1 GTCAATTACTTGGAGGCAAAGGAAGGGT
95078891 TGTTTCCTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.33, C:0.11, G:0.35, T:0.21
Consensus pattern (29 bp):
GTCAATTACTTGGAGGCAAAGGAAGGGTA
Found at i:95082376 original size:46 final size:46
Alignment explanation
Indices: 95082239--95082414 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 46
95082229 TCACTTGTGT
* * ** * *
95082239 GAGCTAGTGTAGGACATGTCTGGGACATGCATCGGCC-ACATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGA-GACGA
* *
95082285 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTTGAGACGA
* * * *
95082333 GTGCTAGTGTAAGACATGTGTGGGACATGCTTCGGCCTTGAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGACG-A
* *
95082380 -AGCCAGTGTATGACATGTCTGAGACATGCATCGGC
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGC
95082415 TACGAGATGT
Statistics
Matches: 106, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
46 56 0.53
47 26 0.25
48 23 0.22
49 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGACGA
Found at i:95084539 original size:20 final size:20
Alignment explanation
Indices: 95084514--95084581 Score: 68
Period size: 20 Copynumber: 3.3 Consensus size: 20
95084504 TTTTGCACAT
95084514 TAATTCCATATAACACTTAC
1 TAATTCCATATAACACTTAC
**
95084534 TAATTCCATA-AA-TTTTGCAC
1 TAATTCCATATAACACTT--AC
95084554 ATTAATTCCATATAACACTTAC
1 --TAATTCCATATAACACTTAC
95084576 TAATTC
1 TAATTC
95084582 TTCTCAGTCA
Statistics
Matches: 38, Mismatches: 4, Indels: 12
0.70 0.07 0.22
Matches are distributed among these distances:
18 2 0.05
19 2 0.05
20 18 0.47
22 12 0.32
23 2 0.05
24 2 0.05
ACGTcount: A:0.38, C:0.22, G:0.01, T:0.38
Consensus pattern (20 bp):
TAATTCCATATAACACTTAC
Found at i:95084559 original size:42 final size:42
Alignment explanation
Indices: 95084500--95084581 Score: 164
Period size: 42 Copynumber: 2.0 Consensus size: 42
95084490 AATAATAACT
95084500 TAAATTTTGCACATTAATTCCATATAACACTTACTAATTCCA
1 TAAATTTTGCACATTAATTCCATATAACACTTACTAATTCCA
95084542 TAAATTTTGCACATTAATTCCATATAACACTTACTAATTC
1 TAAATTTTGCACATTAATTCCATATAACACTTACTAATTC
95084582 TTCTCAGTCA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.38, C:0.21, G:0.02, T:0.39
Consensus pattern (42 bp):
TAAATTTTGCACATTAATTCCATATAACACTTACTAATTCCA
Found at i:95084562 original size:22 final size:22
Alignment explanation
Indices: 95084500--95084565 Score: 68
Period size: 22 Copynumber: 3.1 Consensus size: 22
95084490 AATAATAACT
95084500 TAAATTTTGCACATTAATTCCA
1 TAAATTTTGCACATTAATTCCA
**
95084522 TATAACACTT--AC--TAATTCCA
1 TA-AA-TTTTGCACATTAATTCCA
95084542 TAAATTTTGCACATTAATTCCA
1 TAAATTTTGCACATTAATTCCA
95084564 TA
1 TA
95084566 TAACACTTAC
Statistics
Matches: 34, Mismatches: 4, Indels: 12
0.68 0.08 0.24
Matches are distributed among these distances:
18 2 0.06
19 2 0.06
20 12 0.35
22 14 0.41
23 2 0.06
24 2 0.06
ACGTcount: A:0.38, C:0.20, G:0.03, T:0.39
Consensus pattern (22 bp):
TAAATTTTGCACATTAATTCCA
Found at i:95084735 original size:42 final size:42
Alignment explanation
Indices: 95084689--95084789 Score: 103
Period size: 42 Copynumber: 2.4 Consensus size: 42
95084679 GGTTGAACGA
* **
95084689 AAGCTCATAGGAGTTGGACAAAAACCCATTAGGGTTAAACAG
1 AAGCTCATAAGAGTTAAACAAAAACCCATTAGGGTTAAACAG
* * * ** *
95084731 AAGCTCAAAAAAGCTAAACGGAAACCCATTAGGGTTAAACGG
1 AAGCTCATAAGAGTTAAACAAAAACCCATTAGGGTTAAACAG
* *
95084773 AAACTCATATGAGTTAA
1 AAGCTCATAAGAGTTAA
95084790 TTGAAGCTCA
Statistics
Matches: 45, Mismatches: 14, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.44, C:0.17, G:0.21, T:0.19
Consensus pattern (42 bp):
AAGCTCATAAGAGTTAAACAAAAACCCATTAGGGTTAAACAG
Found at i:95084788 original size:21 final size:21
Alignment explanation
Indices: 95084745--95084789 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
95084735 TCAAAAAAGC
*
95084745 TAAACGGAAACCCATTAGGGT
1 TAAACGGAAACCCATTAGAGT
*
95084766 TAAACGGAAACTCA-TATGAGT
1 TAAACGGAAACCCATTA-GAGT
95084787 TAA
1 TAA
95084790 TTGAAGCTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 2 0.10
21 19 0.90
ACGTcount: A:0.42, C:0.16, G:0.20, T:0.22
Consensus pattern (21 bp):
TAAACGGAAACCCATTAGAGT
Found at i:95090743 original size:43 final size:42
Alignment explanation
Indices: 95090673--95090794 Score: 131
Period size: 43 Copynumber: 2.9 Consensus size: 42
95090663 GGAAAGCTCG
*
95090673 TACAATGCCAACATCCCA-AATGTGGTCTTACATGTAATCAAA
1 TACAATGCCAACGTCCCAGAA-GTGGTCTTACATGTAATCAAA
* ** * *
95090715 TATCGATGCCATTGTCCCAGATAG-GGTCTTACACGAAATCAAA
1 TA-CAATGCCAACGTCCCAGA-AGTGGTCTTACATGTAATCAAA
* *
95090758 TACAATGCCAACGTCCCAGACGTGCTCTTACATGTAA
1 TACAATGCCAACGTCCCAGAAGTGGTCTTACATGTAA
95090795 ATTATAAGTC
Statistics
Matches: 63, Mismatches: 13, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
41 1 0.02
42 28 0.44
43 31 0.49
44 2 0.03
45 1 0.02
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (42 bp):
TACAATGCCAACGTCCCAGAAGTGGTCTTACATGTAATCAAA
Found at i:95091935 original size:13 final size:13
Alignment explanation
Indices: 95091917--95091941 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
95091907 ATAAATGATA
95091917 AAATTTTCACACT
1 AAATTTTCACACT
95091930 AAATTTTCACAC
1 AAATTTTCACAC
95091942 ATGTCAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.00, T:0.36
Consensus pattern (13 bp):
AAATTTTCACACT
Found at i:95094466 original size:40 final size:39
Alignment explanation
Indices: 95094365--95094587 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
95094355 TCCTCGTTCA
* * *
95094365 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
* *
95094404 AATGCCTTCGGGACATAGCCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
* * *
95094443 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGTAC
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
* * * *
95094483 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAGCCCGG-ATTTAGTAACTCGCAC
* * * * *
95094523 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCAC
*
95094564 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
95094588 CAGCATTCAA
Statistics
Matches: 155, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
39 41 0.26
40 102 0.66
41 12 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
Found at i:95094596 original size:41 final size:41
Alignment explanation
Indices: 95094519--95094596 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
95094509 TTTGTATCTC
* * *
95094519 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
95094560 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
95094597 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:95096193 original size:27 final size:27
Alignment explanation
Indices: 95096141--95096230 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
95096131 GTGATAGAGT
95096141 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
95096170 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
95096197 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
95096225 CACCAG
1 CACCAG
95096231 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:95096383 original size:28 final size:28
Alignment explanation
Indices: 95096336--95096397 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
95096326 AAATTAACCC
*
95096336 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
95096364 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
95096392 TAGGGG
1 TAGGGG
95096398 CATTCTAGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.31, C:0.08, G:0.29, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:95099363 original size:47 final size:47
Alignment explanation
Indices: 95099299--95099421 Score: 237
Period size: 47 Copynumber: 2.6 Consensus size: 47
95099289 GATGCGAATG
*
95099299 TCCGAACTCGTTGAGTTGAGTTCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
95099346 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
95099393 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
95099422 ACTTATGGAT
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 75 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
Found at i:95109616 original size:6 final size:6
Alignment explanation
Indices: 95109571--95109625 Score: 65
Period size: 6 Copynumber: 8.8 Consensus size: 6
95109561 TTGAGTCCGA
* * *
95109571 TTATTT CTATGT TTATGT TTATTT TTATCTT TTATCTT TTATTT TTATTT
1 TTATTT TTATTT TTATTT TTATTT TTAT-TT TTAT-TT TTATTT TTATTT
95109621 TTATT
1 TTATT
95109626 CTTCTTGTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
6 31 0.70
7 13 0.30
ACGTcount: A:0.16, C:0.05, G:0.04, T:0.75
Consensus pattern (6 bp):
TTATTT
Found at i:95109628 original size:20 final size:20
Alignment explanation
Indices: 95109588--95109624 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
95109578 TATGTTTATG
95109588 TTTATTTTTATCTTTTATCT
1 TTTATTTTTATCTTTTATCT
95109608 TTTATTTTTAT-TTTTAT
1 TTTATTTTTATCTTTTAT
95109625 TCTTCTTGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.78
Consensus pattern (20 bp):
TTTATTTTTATCTTTTATCT
Found at i:95122140 original size:19 final size:20
Alignment explanation
Indices: 95122108--95122146 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
95122098 AAAGTTGTGA
95122108 AAATTAATGAAAAAT-TATG
1 AAATTAATGAAAAATATATG
* *
95122127 AAATTTATGGAAAATATATG
1 AAATTAATGAAAAATATATG
95122147 CTGTAAATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.54, C:0.00, G:0.13, T:0.33
Consensus pattern (20 bp):
AAATTAATGAAAAATATATG
Found at i:95131402 original size:145 final size:148
Alignment explanation
Indices: 95131134--95131463 Score: 434
Period size: 145 Copynumber: 2.2 Consensus size: 148
95131124 ATAGGGTAAG
* * * *
95131134 GGTCGATGCCATGTCCCGGACATGGTCTTACACTAGCTCACACATCAAAGTCGATGCCATGTCCC
1 GGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACACATCAAAGCCAATGCCATGTCCC
* * * *
95131199 AGACATGGTCTTACACTAACTCTCGTATATCGAGGCCAATGCCATGTCCCAGAAATGGTCTTACA
66 AAACATGGTATTACACTAACTATCATATATCGAGGCCAATGCCATGTCCCAGAAATGGTCTTACA
* * *
95131264 CTGGCTCTCATCTATC-G
131 CTAGCTCTCATATATCAA
*
95131281 GTGTCGATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATATCAAA-CCAATGCCATGTCC
1 G-GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACACATCAAAGCCAATGCCATGTCC
* * * * *
95131343 CAAACATGGTATTACACTAGCTATCATATCTTGAGGCCGATGCCATGTCCCAGACATGGTCTTAC
65 CAAACATGGTATTACACTAACTATCATATATCGAGGCCAATGCCATGTCCCAGAAATGGTCTTAC
*
95131408 ACTAGCTCTCATATCTCAA
130 ACTAGCTCTCATATATCAA
* * *
95131427 GGCCGATGCCATGTCCTAGACATGGTCTTAAACTAGC
1 GGTCGATGCCATGTCCCAGACATGGTCTTACACTAGC
95131464 TTTCATATCT
Statistics
Matches: 158, Mismatches: 21, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
145 112 0.71
146 12 0.08
147 2 0.01
148 32 0.20
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (148 bp):
GGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACACATCAAAGCCAATGCCATGTCCC
AAACATGGTATTACACTAACTATCATATATCGAGGCCAATGCCATGTCCCAGAAATGGTCTTACA
CTAGCTCTCATATATCAA
Found at i:95131472 original size:50 final size:50
Alignment explanation
Indices: 95131137--95131474 Score: 359
Period size: 50 Copynumber: 6.9 Consensus size: 50
95131127 GGGTAAGGGT
* * * * *
95131137 CGATGCCATGTCCCGGACATGGTCTTACACTAGCTCACACA--TCAAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCAAGGC
* * * *
95131185 CGATGCCATGTCCCAGACATGGTCTTACACTAACTCTCGTATATCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCAAGGC
* * * * * * *
95131235 CAATGCCATGTCCCAGAAATGGTCTTACACTGGCTCTCATCTATC-GGTGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCAAG-GC
* * *
95131285 CGATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATA--TCAA-AC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCAAGGC
* * * * **
95131330 CAATGCCATGTCCCAAACATGGTATTACACTAGCTATCATATCTTGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCAAGGC
95131380 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCAAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCAAGGC
* * *
95131430 CGATGCCATGTCCTAGACATGGTCTTAAACTAGCTTTCATATCTC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTC
95131475 CCTAGCATCA
Statistics
Matches: 239, Mismatches: 42, Indels: 16
0.80 0.14 0.05
Matches are distributed among these distances:
45 28 0.12
46 3 0.01
47 4 0.02
48 40 0.17
49 4 0.02
50 160 0.67
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (50 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTCAAGGC
Found at i:95133969 original size:42 final size:43
Alignment explanation
Indices: 95133899--95134030 Score: 153
Period size: 42 Copynumber: 3.0 Consensus size: 43
95133889 TCTTATATGT
*
95133899 AATCAAATACTGATGCCACTGTCCCAGACAGGGTCTTACACA-A
1 AATCAAATAC-GATGCCAATGTCCCAGACAGGGTCTTACACATA
*
95133942 AATCAAATACGATGCCAATGTCCCAGACATGGTCTTACACATA
1 AATCAAATACGATGCCAATGTCCCAGACAGGGTCTTACACATA
* **
95133985 AATCATAAGT-TGATGCCAACATCCCAGAC-GTGGTCTTACACGATA
1 AATCA-AA-TACGATGCCAATGTCCCAGACAG-GGTCTTACAC-ATA
95134030 A
1 A
95134031 CACATATCGA
Statistics
Matches: 78, Mismatches: 6, Indels: 8
0.85 0.07 0.09
Matches are distributed among these distances:
42 29 0.37
43 16 0.21
44 28 0.36
45 5 0.06
ACGTcount: A:0.36, C:0.26, G:0.16, T:0.23
Consensus pattern (43 bp):
AATCAAATACGATGCCAATGTCCCAGACAGGGTCTTACACATA
Found at i:95134012 original size:44 final size:43
Alignment explanation
Indices: 95133899--95134030 Score: 144
Period size: 44 Copynumber: 3.0 Consensus size: 43
95133889 TCTTATATGT
* *
95133899 AATCAAATACTGATGCC-ACTGTCCCAGACAGGGTCTTACACA-A
1 AATCAAATAC-GATGCCAAC-ATCCCAGACATGGTCTTACACATA
**
95133942 AATCAAATACGATGCCAATGTCCCAGACATGGTCTTACACATA
1 AATCAAATACGATGCCAACATCCCAGACATGGTCTTACACATA
* *
95133985 AATCATAAGT-TGATGCCAACATCCCAGACGTGGTCTTACACGATA
1 AATCA-AA-TACGATGCCAACATCCCAGACATGGTCTTACAC-ATA
95134030 A
1 A
95134031 CACATATCGA
Statistics
Matches: 78, Mismatches: 6, Indels: 8
0.85 0.07 0.09
Matches are distributed among these distances:
42 27 0.35
43 17 0.22
44 29 0.37
45 5 0.06
ACGTcount: A:0.36, C:0.26, G:0.16, T:0.23
Consensus pattern (43 bp):
AATCAAATACGATGCCAACATCCCAGACATGGTCTTACACATA
Found at i:95136015 original size:30 final size:30
Alignment explanation
Indices: 95135969--95136025 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
95135959 TTTTCGGGCC
95135969 TAGGGGAAAATCGTAATTCTG-CAAAGGTT
1 TAGGGGAAAATCGTAATTCTGCCAAAGGTT
* *
95135998 TAGGGGCAAAATTGTAATTTTGCCAAAG
1 TAGGGG-AAAATCGTAATTCTGCCAAAG
95136026 TTTGAGTTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 6 0.25
30 13 0.54
31 5 0.21
ACGTcount: A:0.35, C:0.11, G:0.26, T:0.28
Consensus pattern (30 bp):
TAGGGGAAAATCGTAATTCTGCCAAAGGTT
Found at i:95136855 original size:47 final size:47
Alignment explanation
Indices: 95136788--95136956 Score: 259
Period size: 47 Copynumber: 3.6 Consensus size: 47
95136778 GCATTGGCAC
* *
95136788 TAAGACAAGTATACCATGTAAGACCATGTTT-GAGACATGGCGTTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGA-ACATGGCATTTGG
* *
95136835 TAAAACAAAGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
95136882 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
95136929 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
95136957 CCAAGGCGTG
Statistics
Matches: 112, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
47 110 0.98
48 2 0.02
ACGTcount: A:0.37, C:0.14, G:0.23, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:95137062 original size:55 final size:54
Alignment explanation
Indices: 95136935--95137131 Score: 227
Period size: 55 Copynumber: 3.6 Consensus size: 54
95136925 TTGGTAAGAT
* * * *
95136935 AAGGATATCATGTAAGACCATGCCAAGGCGTGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * ** *
95136989 AAGGAAATCATGTAAGACCATATCAAGACATGTCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * * *
95137044 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAAGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
95137097 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
95137132 ATGGTAAGTT
Statistics
Matches: 120, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
52 4 0.03
53 32 0.27
54 39 0.32
55 41 0.34
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:95137143 original size:53 final size:54
Alignment explanation
Indices: 95136935--95137142 Score: 213
Period size: 53 Copynumber: 3.9 Consensus size: 54
95136925 TTGGTAAGAT
* * * *
95136935 AAGGATATCATGTAAGACCATGCCAAGGCGTGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAAGC
* * ** * * *
95136989 AAGGAAATCATGTAAGACCATATCAAGACATGTCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAAGC
* * * *
95137044 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAAGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAAGC
* * * *
95137097 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
95137143 AAAAAGGAAA
Statistics
Matches: 129, Mismatches: 22, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
52 4 0.03
53 41 0.32
54 39 0.30
55 41 0.32
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAAGC
Found at i:95139156 original size:40 final size:40
Alignment explanation
Indices: 95139100--95139317 Score: 271
Period size: 40 Copynumber: 5.5 Consensus size: 40
95139090 CGGATGATAA
* * *
95139100 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
95139140 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
95139180 CCGGGTTAAGCCCCGAAGGCATTTGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
95139220 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
95139260 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
95139300 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
95139318 TACCTGGCTT
Statistics
Matches: 155, Mismatches: 21, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
39 16 0.10
40 139 0.90
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:95143350 original size:29 final size:28
Alignment explanation
Indices: 95143284--95143350 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 28
95143274 TAAAATGTCC
**
95143284 AAATATGGGTTAATTTGTGAAATGTTGAA
1 AAATAT-GGTTAATTTGTGAAATAATGAA
**
95143313 ATTTGATGGTTAATTTGTGAAATAAATGAA
1 AAAT-ATGGTTAATTTGTGAAAT-AATGAA
95143343 AAATATGG
1 AAATATGG
95143351 ACAGTTAGGG
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
29 22 0.73
30 8 0.27
ACGTcount: A:0.40, C:0.00, G:0.22, T:0.37
Consensus pattern (28 bp):
AAATATGGTTAATTTGTGAAATAATGAA
Found at i:95155395 original size:39 final size:40
Alignment explanation
Indices: 95155281--95155405 Score: 182
Period size: 40 Copynumber: 3.1 Consensus size: 40
95155271 GCTACTCGTT
* *
95155281 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
95155321 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
95155361 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
95155400 CAAATG
1 CAAATG
95155406 GTTCCGTCCT
Statistics
Matches: 77, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 28 0.36
40 47 0.61
41 2 0.03
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:95159046 original size:79 final size:81
Alignment explanation
Indices: 95158937--95159119 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
95158927 TACTCGTTCA
* *
95158937 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
95159000 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
95159017 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
95159080 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
95159096 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
95159120 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:95159119 original size:40 final size:40
Alignment explanation
Indices: 95158916--95159119 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
95158906 CGGAATTTAA
** *
95158916 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
95158956 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
95158996 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
95159035 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
95159075 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
95159115 CCGGA
1 CCGGA
95159120 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:95159767 original size:37 final size:37
Alignment explanation
Indices: 95159717--95159802 Score: 158
Period size: 35 Copynumber: 2.4 Consensus size: 37
95159707 AGGCTACCTA
95159717 TGGCCGAACATACACATAACTTATGTACTTATTCATG
1 TGGCCGAACATACACATAACTTATGTACTTATTCATG
95159754 TGGCCGAACAT--ACATAACTTATGTACTTATTCATG
1 TGGCCGAACATACACATAACTTATGTACTTATTCATG
95159789 TGGCCGAACATACA
1 TGGCCGAACATACA
95159803 TGTCTATGTT
Statistics
Matches: 47, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
35 35 0.74
37 12 0.26
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (37 bp):
TGGCCGAACATACACATAACTTATGTACTTATTCATG
Found at i:95167154 original size:79 final size:80
Alignment explanation
Indices: 95166977--95167160 Score: 200
Period size: 79 Copynumber: 2.3 Consensus size: 80
95166967 GCTACTCGTT
* * *
95166977 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGTACAAATGCCTTCGGGACTTAACCTG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGACTTAACCTG
* *
95167041 GATTTAGTAACTCGCAC
64 GATATAGTAACTAGCAC
* *
95167058 CAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GATCTTAGTCC-G
1 CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGA-CTTA-ACCTG
* *
95167119 GATATGGTCACTTAGCA-
64 GATATAGTAAC-TAGCAC
95167136 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
95167161 CATCATTCGA
Statistics
Matches: 88, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
77 2 0.02
78 25 0.28
79 48 0.55
80 10 0.11
81 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGACTTAACCTGGA
TATAGTAACTAGCAC
Found at i:95167160 original size:40 final size:40
Alignment explanation
Indices: 95166958--95167160 Score: 211
Period size: 40 Copynumber: 5.1 Consensus size: 40
95166948 CGGAATTTAA
** *
95166958 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
95166998 CCGGTTATAGTAACTCGTACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
95167038 CTGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
95167077 CCGGA-ATTAGTAACTCGCACAAATGCCTTC--GATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
95167116 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
95167156 CCGGA
1 CCGGA
95167161 CATCATTCGA
Statistics
Matches: 137, Mismatches: 18, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
37 1 0.01
39 53 0.39
40 81 0.59
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:95167807 original size:36 final size:37
Alignment explanation
Indices: 95167759--95167845 Score: 167
Period size: 36 Copynumber: 2.4 Consensus size: 37
95167749 AGGCTACCTA
95167759 TGGCCGAACATACACATAACTTATGTACTTATTCATG
1 TGGCCGAACATACACATAACTTATGTACTTATTCATG
95167796 TGGCC-AACATACACATAACTTATGTACTTATTCATG
1 TGGCCGAACATACACATAACTTATGTACTTATTCATG
95167832 TGGCCGAACATACA
1 TGGCCGAACATACA
95167846 TGTCTATGTT
Statistics
Matches: 49, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
36 36 0.73
37 13 0.27
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.30
Consensus pattern (37 bp):
TGGCCGAACATACACATAACTTATGTACTTATTCATG
Found at i:95168486 original size:23 final size:23
Alignment explanation
Indices: 95168436--95168491 Score: 64
Period size: 25 Copynumber: 2.5 Consensus size: 23
95168426 AAAGGATGGA
95168436 CACATTT-TTT-TCTTTTGTTTT
1 CACATTTCTTTCTCTTTTGTTTT
*
95168457 CATCATTTTCTTTCTCTTTTTTTTT
1 CA-CA-TTTCTTTCTCTTTTGTTTT
95168482 C-CATTTCTTT
1 CACATTTCTTT
95168492 ATTACTAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
21 2 0.07
22 9 0.30
23 5 0.17
24 3 0.10
25 11 0.37
ACGTcount: A:0.09, C:0.20, G:0.02, T:0.70
Consensus pattern (23 bp):
CACATTTCTTTCTCTTTTGTTTT
Found at i:95178440 original size:40 final size:40
Alignment explanation
Indices: 95178366--95178538 Score: 278
Period size: 40 Copynumber: 4.3 Consensus size: 40
95178356 ACCCAAGTAT
* *
95178366 CTTCGGGAT-TTAG-CCAGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
95178405 CTTCGGGTCCTAGCCCGGATACAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
95178445 CTTCGGGTCTTAGCCCGGATATAGCAACTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
95178485 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
95178525 CTTCGGGTCTTAGC
1 CTTCGGGTCTTAGC
95178539 TCGGTTATCA
Statistics
Matches: 124, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
38 1 0.01
39 10 0.08
40 113 0.91
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:95182234 original size:44 final size:43
Alignment explanation
Indices: 95182172--95182284 Score: 131
Period size: 44 Copynumber: 2.6 Consensus size: 43
95182162 TGTGATTCTG
* * * *
95182172 TGTAAGACCACGTTTGGGACGTTGGCATCGATTTGTGATTTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTG-GTTACA
* *
95182216 TGTAAGAGCC-TGTCTGGGATAG-TGGCATCGATATGTGGTTACA
1 TGTAAGA-CCACGTCTGGGA-CGTTGGCATCGATATGTGGTTACA
95182259 TGTAAGACCACGTCTGGGACGTTGGC
1 TGTAAGACCACGTCTGGGACGTTGGC
95182285 GTTGTACGAG
Statistics
Matches: 57, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
42 3 0.05
43 23 0.40
44 28 0.49
45 3 0.05
ACGTcount: A:0.21, C:0.17, G:0.32, T:0.30
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGGTTACA
Found at i:95183337 original size:13 final size:13
Alignment explanation
Indices: 95183319--95183344 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
95183309 ATATGTTTCA
95183319 TGATTGTTTTGGT
1 TGATTGTTTTGGT
95183332 TGATTGTTTTGGT
1 TGATTGTTTTGGT
95183345 ACAGATCCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.31, T:0.62
Consensus pattern (13 bp):
TGATTGTTTTGGT
Found at i:95186367 original size:12 final size:12
Alignment explanation
Indices: 95186359--95186385 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
95186349 TATATGGTCT
95186359 GTAATATGGTAG
1 GTAATATGGTAG
95186371 GTAATATGGTAG
1 GTAATATGGTAG
95186383 GTA
1 GTA
95186386 TGTCGTGTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (12 bp):
GTAATATGGTAG
Found at i:95186989 original size:20 final size:20
Alignment explanation
Indices: 95186966--95187010 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
95186956 AGGGACTAAA
* *
95186966 ATGAAAATTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
95186986 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
95187006 ATGAA
1 ATGAA
95187011 TACATGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.11, T:0.38
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:95203492 original size:40 final size:40
Alignment explanation
Indices: 95203409--95203671 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
95203399 TTGAATGCTG
* * * * * *
95203409 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
95203449 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
95203489 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
95203529 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
95203569 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
95203609 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
95203648 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
95203672 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:95203691 original size:79 final size:80
Alignment explanation
Indices: 95203448--95203706 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
95203438 AAGTGAATAT
* * * * * *
95203448 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
95203512 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
95203528 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
95203593 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
95203608 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
95203672 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
95203687 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
95203707 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:95211758 original size:27 final size:27
Alignment explanation
Indices: 95211728--95211877 Score: 122
Period size: 27 Copynumber: 5.5 Consensus size: 27
95211718 ATATTGAGCC
* *
95211728 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCCATATAATCAACT
* ** *
95211755 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCCATATAATCAACT
* * * *
95211782 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCCATATAATCA-ACT
* ** *
95211810 CGCACACTTAGTGCCGTATGGTCAATT
1 CGCACACTTAGTGCCATATAATCAACT
* **
95211837 CGCACACTTAGTG-CATCATATTCATTT
1 CGCACACTTAGTGCCAT-ATAATCAACT
95211864 CGCACACTTAGTGC
1 CGCACACTTAGTGC
95211878 AACAAAGTAG
Statistics
Matches: 98, Mismatches: 22, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
26 2 0.02
27 75 0.77
28 21 0.21
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCCATATAATCAACT
Found at i:95211878 original size:27 final size:27
Alignment explanation
Indices: 95211749--95211904 Score: 108
Period size: 27 Copynumber: 5.7 Consensus size: 27
95211739 TGCTATATAA
* * * *
95211749 TCAACTCGCACATTTAGTGCCACGTA-A
1 TCAATTCGCACACTTAGTG-CACATATG
*
95211776 TCAAATCGCACACTTAGTGCTACATA-G
1 TCAATTCGCACACTTAGTGC-ACATATG
* * *
95211803 TTAGACTCGCACACTTAGTGC-CGTATGG
1 TCA-ATTCGCACACTTAGTGCACATAT-G
95211831 TCAATTCGCACACTTAGTGCATCATAT-
1 TCAATTCGCACACTTAGTGCA-CATATG
* *
95211858 TCATTTCGCACACTTAGTGCAACA-AAG
1 TCAATTCGCACACTTAGTGC-ACATATG
*
95211885 T-AGAATCGCACACTTAGTGC
1 TCA-ATTCGCACACTTAGTGC
95211905 TGTACAATTT
Statistics
Matches: 106, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
26 6 0.06
27 76 0.72
28 20 0.19
29 4 0.04
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (27 bp):
TCAATTCGCACACTTAGTGCACATATG
Found at i:95214695 original size:40 final size:40
Alignment explanation
Indices: 95214666--95214874 Score: 312
Period size: 40 Copynumber: 5.2 Consensus size: 40
95214656 GATTAAGATT
* * * *
95214666 CGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCC
1 CGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCC
95214706 CGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCC
1 CGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCC
95214746 CGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCC
1 CGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCC
* *
95214786 CGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCC
1 CGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCC
* * * * *
95214826 CGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCC
1 CGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCC
95214865 CGAAGGCATT
1 CGAAGGCATT
95214875 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 34 0.22
40 124 0.78
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCC
Found at i:95214750 original size:80 final size:80
Alignment explanation
Indices: 95214612--95214874 Score: 316
Period size: 80 Copynumber: 3.3 Consensus size: 80
95214602 TTGAATGCTG
* * * * * * *
95214612 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTAAGAT-TCGAAGGCCT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCCT
*
95214675 TTGTGCGAGATACTAAA
64 TTGTGCGAGTTACTAAA
* * *
95214692 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
95214757 GTGCGAGTTATTAAA
66 GTGCGAGTTACTAAA
* * * *
95214772 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGG-CATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
95214836 GTGTGAGTTACTAAA
66 GTGCGAGTTACTAAA
* *
95214851 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
95214875 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
79 36 0.23
80 117 0.74
81 6 0.04
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
GTGCGAGTTACTAAA
Found at i:95214826 original size:120 final size:120
Alignment explanation
Indices: 95214612--95214874 Score: 325
Period size: 120 Copynumber: 2.2 Consensus size: 120
95214602 TTGAATGCTG
* * * *
95214612 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTAAGATTCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATT
* *
95214676 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
66 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* * * * *
95214732 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGAT-CCGAAGGCAT
* ** * *
95214795 TCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
95214851 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
95214875 TGAACGAGGA
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
119 35 0.29
120 81 0.66
121 6 0.05
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATT
CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:95214894 original size:79 final size:80
Alignment explanation
Indices: 95214666--95214909 Score: 251
Period size: 80 Copynumber: 3.1 Consensus size: 80
95214656 GATTAAGATT
* * * * * ** * *
95214666 CGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTA-TTA
1 CGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAG-GAGCTA
95214730 AATCCGGGTTAAGTCC
65 AATCCGGGTTAAGTCC
* * * ** ** *
95214746 CGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 CGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAA
*
95214811 ATCCGGGTTATGTCC
66 ATCCGGGTTAAGTCC
* * * *
95214826 CGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTAT
1 CGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAA
*
95214890 ATCC-GGTTAAATCC
66 ATCCGGGTTAAGTCC
95214904 CGAAGG
1 CGAAGG
95214910 TACGTGATTT
Statistics
Matches: 143, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
78 14 0.10
79 47 0.33
80 82 0.57
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
CGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAA
ATCCGGGTTAAGTCC
Found at i:95216838 original size:13 final size:13
Alignment explanation
Indices: 95216820--95216844 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
95216810 CCAAGCACAC
95216820 GCCCGTGTCCCTG
1 GCCCGTGTCCCTG
95216833 GCCCGTGTCCCT
1 GCCCGTGTCCCT
95216845 CATACGGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.48, G:0.28, T:0.24
Consensus pattern (13 bp):
GCCCGTGTCCCTG
Found at i:95216877 original size:12 final size:12
Alignment explanation
Indices: 95216860--95216896 Score: 74
Period size: 12 Copynumber: 3.1 Consensus size: 12
95216850 GGCCTAGACA
95216860 CGCCCGTGTCAT
1 CGCCCGTGTCAT
95216872 CGCCCGTGTCAT
1 CGCCCGTGTCAT
95216884 CGCCCGTGTCAT
1 CGCCCGTGTCAT
95216896 C
1 C
95216897 ATTCATTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.08, C:0.43, G:0.24, T:0.24
Consensus pattern (12 bp):
CGCCCGTGTCAT
Found at i:95219785 original size:29 final size:24
Alignment explanation
Indices: 95219728--95219774 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
95219718 GGCATGTAAT
95219728 TATGTTAATTGAATGTTGTGTTTG
1 TATGTTAATTGAATGTTGTGTTTG
95219752 TATGTTAATTGAATGTTGTGTTT
1 TATGTTAATTGAATGTTGTGTTT
95219775 TTTTGTAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.21, C:0.00, G:0.23, T:0.55
Consensus pattern (24 bp):
TATGTTAATTGAATGTTGTGTTTG
Found at i:95229559 original size:46 final size:46
Alignment explanation
Indices: 95229489--95229580 Score: 125
Period size: 46 Copynumber: 2.0 Consensus size: 46
95229479 TTACTTAACT
95229489 CTTGTCTAGTAGAGACATTAGTAGTAATCACTTCCTG-GACAAAAAA
1 CTTGTCTAGTAGAGACATTAGTAGTAATCACTTCC-GAGACAAAAAA
* * *
95229535 CTTGTCTAGTAGAGAGAGTT-GTAGTGATCACTTTCGAGACAAAAAA
1 CTTGTCTAGTAGAGACA-TTAGTAGTAATCACTTCCGAGACAAAAAA
95229581 AAAAACTATC
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
45 1 0.02
46 38 0.93
47 2 0.05
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.28
Consensus pattern (46 bp):
CTTGTCTAGTAGAGACATTAGTAGTAATCACTTCCGAGACAAAAAA
Found at i:95233561 original size:46 final size:46
Alignment explanation
Indices: 95233491--95233664 Score: 215
Period size: 46 Copynumber: 3.8 Consensus size: 46
95233481 TTCGACATGA
* * * * *
95233491 TGCCATAGTATTTTTCAACTATGGTCTTACTCGTTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTC-ATTTCATGTCACGT
* *
95233537 TTCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
* * * *
95233583 TGCCATGGTATCTTTCAACCATAGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
* *
95233629 TGCCATGGTATCTTTCAACCATGGTCTGACACATTT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTT
95233665 TATATCAGAG
Statistics
Matches: 112, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
45 4 0.04
46 108 0.96
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
Found at i:95236043 original size:16 final size:17
Alignment explanation
Indices: 95236011--95236051 Score: 66
Period size: 16 Copynumber: 2.4 Consensus size: 17
95236001 CACCTTTAAT
95236011 TTTTCCTTTTCTTCTTTC
1 TTTT-CTTTTCTTCTTTC
95236029 TTTTCTTTT-TTCTTTC
1 TTTTCTTTTCTTCTTTC
95236045 TTTTCTT
1 TTTTCTT
95236052 CCCCTGCTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 14 0.61
17 5 0.22
18 4 0.17
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTTCTTTTCTTCTTTC
Found at i:95242387 original size:31 final size:33
Alignment explanation
Indices: 95242342--95242403 Score: 85
Period size: 32 Copynumber: 1.9 Consensus size: 33
95242332 TTATAAGCAA
95242342 TTAAACAACTCAAA-TATATAAAC-ATTTCATT
1 TTAAACAACTCAAATTATATAAACAATTTCATT
*
95242373 TTAAACTAAC-CAAATTATATTAACAATTTCA
1 TTAAAC-AACTCAAATTATATAAACAATTTCA
95242404 AGCTTATTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
31 10 0.37
32 11 0.41
33 6 0.22
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.35
Consensus pattern (33 bp):
TTAAACAACTCAAATTATATAAACAATTTCATT
Found at i:95247715 original size:21 final size:21
Alignment explanation
Indices: 95247682--95247724 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
95247672 TAAACTTACT
95247682 AAAATTATAAAATATTAAAAA
1 AAAATTATAAAATATTAAAAA
*
95247703 AAAACTTAT-AAATATTATAAA
1 AAAA-TTATAAAATATTAAAAA
95247724 A
1 A
95247725 TATAAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (21 bp):
AAAATTATAAAATATTAAAAA
Found at i:95247720 original size:31 final size:33
Alignment explanation
Indices: 95247646--95247734 Score: 107
Period size: 31 Copynumber: 2.7 Consensus size: 33
95247636 TTTTCCATAA
95247646 AAATATT-TAAAATATTAAAATTGATATAAACTTACT
1 AAATATTATAAAATATTAAAA---A-ATAAACTTACT
95247682 AAA-ATTATAAAATATTAAAAAA-AAACTTA-T
1 AAATATTATAAAATATTAAAAAATAAACTTACT
95247712 AAATATTATAAAATA-TAAAAAAT
1 AAATATTATAAAATATTAAAAAAT
95247735 CTAATAAATT
Statistics
Matches: 50, Mismatches: 0, Indels: 11
0.82 0.00 0.18
Matches are distributed among these distances:
30 11 0.22
31 18 0.36
32 1 0.02
33 1 0.02
35 3 0.06
36 16 0.32
ACGTcount: A:0.62, C:0.03, G:0.01, T:0.34
Consensus pattern (33 bp):
AAATATTATAAAATATTAAAAAATAAACTTACT
Found at i:95247734 original size:19 final size:19
Alignment explanation
Indices: 95247712--95247761 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
95247702 AAAAACTTAT
*
95247712 AAATATTATAAAATATAAA
1 AAATATAATAAAATATAAA
* *
95247731 AAATCTAATAAATTATAAA
1 AAATATAATAAAATATAAA
95247750 AAA-ATAA-AAAAT
1 AAATATAATAAAAT
95247762 TAATAAAACT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
17 4 0.15
18 3 0.12
19 19 0.73
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (19 bp):
AAATATAATAAAATATAAA
Found at i:95247745 original size:26 final size:26
Alignment explanation
Indices: 95247683--95247768 Score: 84
Period size: 27 Copynumber: 3.1 Consensus size: 26
95247673 AAACTTACTA
* *
95247683 AAATTATAAAATATTAAAAAAAAACTTAT
1 AAATTATAAAATA-T--AAAAAATCTAAT
95247712 AAATATTATAAAATATAAAAAATCTAAT
1 -AA-ATTATAAAATATAAAAAATCTAAT
*
95247740 AAATTATAAAAAAATAAAAAAT-TAAT
1 AAATTAT-AAAATATAAAAAATCTAAT
95247766 AAA
1 AAA
95247769 ACTTATTTAA
Statistics
Matches: 51, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
26 12 0.24
27 15 0.29
28 10 0.20
30 3 0.06
31 11 0.22
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (26 bp):
AAATTATAAAATATAAAAAATCTAAT
Found at i:95247767 original size:19 final size:19
Alignment explanation
Indices: 95247682--95247769 Score: 58
Period size: 18 Copynumber: 4.6 Consensus size: 19
95247672 TAAACTTACT
* *
95247682 AAAATTATAAAATATTAAAAA
1 AAAATTATAAAA-AAT-ATAA
* *
95247703 AAAACTTAT-AAATAT-TAT
1 AAAA-TTATAAAAAATATAA
*
95247721 AAAA-TATAAAAAATCTAA
1 AAAATTATAAAAAATATAA
*
95247739 TAAATTATAAAAAA-ATAA
1 AAAATTATAAAAAATATAA
95247757 AAAATTAATAAAA
1 AAAATT-ATAAAA
95247770 CTTATTTAAA
Statistics
Matches: 53, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
16 3 0.06
17 5 0.09
18 18 0.34
19 15 0.28
20 1 0.02
21 7 0.13
22 4 0.08
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.28
Consensus pattern (19 bp):
AAAATTATAAAAAATATAA
Found at i:95247780 original size:29 final size:29
Alignment explanation
Indices: 95247715--95247805 Score: 89
Period size: 27 Copynumber: 3.1 Consensus size: 29
95247705 AACTTATAAA
95247715 TATTATAAAATATAAAAAATCTAAT-AAA-T
1 TATT-TAAAATATAAAAAAT-TAATAAAACT
* *
95247744 TA-TAAAAAAATAAAAAATTAATAAAACT
1 TATTTAAAATATAAAAAATTAATAAAACT
** *
95247772 TATTTAAAATATTTAAAATTAAAAAAAACT
1 TATTTAAAATATAAAAAATT-AATAAAACT
95247802 TATT
1 TATT
95247806 AGAATTCTTA
Statistics
Matches: 51, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
26 4 0.08
27 16 0.31
28 4 0.08
29 15 0.29
30 12 0.24
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (29 bp):
TATTTAAAATATAAAAAATTAATAAAACT
Found at i:95247828 original size:29 final size:29
Alignment explanation
Indices: 95247756--95247828 Score: 69
Period size: 29 Copynumber: 2.4 Consensus size: 29
95247746 TAAAAAAATA
95247756 AAAAATTAATAAAACTTATTTAAAATATTT
1 AAAAA-TAATAAAACTTATTTAAAATATTT
* * *
95247786 AAAATTAAAAAAAACTTA-TTAGAAT-TCTT
1 AAAAAT-AATAAAACTTATTTAAAATAT-TT
95247815 AAAAGATAATAAAA
1 AAAA-ATAATAAAA
95247829 AATGTAAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
28 1 0.03
29 19 0.54
30 15 0.43
ACGTcount: A:0.60, C:0.04, G:0.03, T:0.33
Consensus pattern (29 bp):
AAAAATAATAAAACTTATTTAAAATATTT
Found at i:95247829 original size:30 final size:30
Alignment explanation
Indices: 95247756--95247829 Score: 73
Period size: 30 Copynumber: 2.5 Consensus size: 30
95247746 TAAAAAAATA
95247756 AAAAATTAAT-AAAACTTATTTAAAATATTT
1 AAAAA-TAATAAAAACTTATTTAAAATATTT
* * *
95247786 AAAATTAAAAAAAACTTA-TTAGAAT-TCTT
1 AAAAATAATAAAAACTTATTTAAAATAT-TT
95247815 AAAAGATAATAAAAA
1 AAAA-ATAATAAAAA
95247830 ATGTAAAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
28 1 0.03
29 15 0.42
30 20 0.56
ACGTcount: A:0.61, C:0.04, G:0.03, T:0.32
Consensus pattern (30 bp):
AAAAATAATAAAAACTTATTTAAAATATTT
Found at i:95248324 original size:21 final size:21
Alignment explanation
Indices: 95248300--95248339 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
95248290 TTTTTATGAT
*
95248300 TTTTTATAGAATTTTAATACA
1 TTTTTATAAAATTTTAATACA
95248321 TTTTTATAAAATTTTAATA
1 TTTTTATAAAATTTTAATA
95248340 TGTTTTAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.55
Consensus pattern (21 bp):
TTTTTATAAAATTTTAATACA
Found at i:95248345 original size:21 final size:21
Alignment explanation
Indices: 95248300--95248365 Score: 66
Period size: 21 Copynumber: 3.3 Consensus size: 21
95248290 TTTTTATGAT
* *
95248300 TTTTTATAGAATTTTAATACA
1 TTTTTATAAAATTTTAATATA
95248321 TTTTTATAAAATTTTAATAT-
1 TTTTTATAAAATTTTAATATA
* * *
95248341 GTTTTA-ATAATTTTAA-ATT
1 TTTTTATAAAATTTTAATATA
95248360 TTTTTA
1 TTTTTA
95248366 ATTGATTGTT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
18 2 0.05
19 14 0.36
20 5 0.13
21 18 0.46
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.59
Consensus pattern (21 bp):
TTTTTATAAAATTTTAATATA
Found at i:95248364 original size:19 final size:18
Alignment explanation
Indices: 95248320--95248367 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
95248310 ATTTTAATAC
*
95248320 ATTTTTATAA-AATTTTA
1 ATTTTTTTAATAATTTTA
*
95248337 ATATGTTTTAATAATTTTAA
1 AT-TTTTTTAATAATTTT-A
95248357 ATTTTTTTAAT
1 ATTTTTTTAAT
95248368 TGATTGTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
17 2 0.08
18 6 0.24
19 14 0.56
20 3 0.12
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (18 bp):
ATTTTTTTAATAATTTTA
Found at i:95252476 original size:4 final size:4
Alignment explanation
Indices: 95252467--95252493 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
95252457 GAATAGAAGA
95252467 TGAG TGAG TGAG TGAG TGAG TGAG TGA
1 TGAG TGAG TGAG TGAG TGAG TGAG TGA
95252494 TCAGCTATGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.48, T:0.26
Consensus pattern (4 bp):
TGAG
Found at i:95265254 original size:26 final size:26
Alignment explanation
Indices: 95265225--95265277 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
95265215 AACCGAAAGC
95265225 TAGTGCATTGTGTAATAGCCCGATTT
1 TAGTGCATTGTGTAATAGCCCGATTT
95265251 TAGTGCATTGTGTAATAGCCCGATTT
1 TAGTGCATTGTGTAATAGCCCGATTT
95265277 T
1 T
95265278 GAGGCTAGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.40
Consensus pattern (26 bp):
TAGTGCATTGTGTAATAGCCCGATTT
Found at i:95266285 original size:43 final size:43
Alignment explanation
Indices: 95266227--95266309 Score: 157
Period size: 43 Copynumber: 1.9 Consensus size: 43
95266217 ACCTTGATCG
*
95266227 GGGGAAGAACAAGGTTATTGACGATTAGGTTCATTTCCTAATC
1 GGGGAAGAACAAGGTTATTGACGATTAGGTCCATTTCCTAATC
95266270 GGGGAAGAACAAGGTTATTGACGATTAGGTCCATTTCCTA
1 GGGGAAGAACAAGGTTATTGACGATTAGGTCCATTTCCTA
95266310 CTATTTTGTA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (43 bp):
GGGGAAGAACAAGGTTATTGACGATTAGGTCCATTTCCTAATC
Found at i:95276793 original size:40 final size:40
Alignment explanation
Indices: 95276741--95276990 Score: 333
Period size: 40 Copynumber: 6.2 Consensus size: 40
95276731 CACAAGGCCG
* * * *
95276741 TCGGGTCTTAGCCCGGATTTGGTCACTAGCACAAATGCCT
1 TCGGGACTTAGCCCGGAATTAGTAACTAGCACAAATGCCT
*
95276781 TCGGGACTTAGCCCGG-ATATAGTAACTCGCACAAATGCCT
1 TCGGGACTTAGCCCGGAAT-TAGTAACTAGCACAAATGCCT
* *
95276821 TCGGGACTTAACCCGGAATTAGTAACTCGCACAAATGCCT
1 TCGGGACTTAGCCCGGAATTAGTAACTAGCACAAATGCCT
* * *
95276861 TCGGGACTTATCCCGGAATTAGTAACTCGCACGAATGCCT
1 TCGGGACTTAGCCCGGAATTAGTAACTAGCACAAATGCCT
* *
95276901 TCGAGACTTAGCTCGGAATTAGTAACTCA-CACAAATGCCT
1 TCGGGACTTAGCCCGGAATTAGTAACT-AGCACAAATGCCT
* * *
95276941 TCGGGACTTAGCCCGGAATTAATCACTAGCACAAATGTCT
1 TCGGGACTTAGCCCGGAATTAGTAACTAGCACAAATGCCT
95276981 TCGGGACTTA
1 TCGGGACTTA
95276991 ACCCTGTTAG
Statistics
Matches: 188, Mismatches: 18, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
39 2 0.01
40 184 0.98
41 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
TCGGGACTTAGCCCGGAATTAGTAACTAGCACAAATGCCT
Found at i:95276856 original size:80 final size:80
Alignment explanation
Indices: 95276701--95276994 Score: 344
Period size: 80 Copynumber: 3.7 Consensus size: 80
95276691 ACTCAATTAT
* ** * * * * * *
95276701 CTTCGGGATTTAG-CCGG-ATATAACCACTCGCAC-AAGGCCGTCGGGTCTTAGCCCGGATTTGG
1 CTTCGGGACTTAGCCCGGAAT-TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGAATTAG
* *
95276763 TCACTAGCACAAATGC
65 TAACTCGCACAAATGC
*
95276779 CTTCGGGACTTAGCCCGG-ATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAATTAG
1 CTTCGGGACTTAGCCCGGAAT-TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGAATTAG
95276843 TAACTCGCACAAATGC
65 TAACTCGCACAAATGC
* * * * * *
95276859 CTTCGGGACTTATCCCGGAATTAGTAACTCGCACGAATGCCTTCGAGACTTAGCTCGGAATTAGT
1 CTTCGGGACTTAGCCCGGAATTAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGAATTAGT
*
95276924 AACTCACACAAATGC
66 AACTCGCACAAATGC
* * *
95276939 CTTCGGGACTTAGCCCGGAATTAATCACTAGCACAAATGTCTTCGGGACTTAACCC
1 CTTCGGGACTTAGCCCGGAATTAATAACTCGCACAAATGCCTTCGGGACTTAACCC
95276995 TGTTAGCATC
Statistics
Matches: 186, Mismatches: 27, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
78 12 0.06
79 17 0.09
80 155 0.83
81 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGAATTAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGAATTAGT
AACTCGCACAAATGC
Found at i:95282631 original size:16 final size:16
Alignment explanation
Indices: 95282610--95282640 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
95282600 GTGTGGTCAC
95282610 ACACAAGCCCATGTGT
1 ACACAAGCCCATGTGT
95282626 ACACAAGCCCATGTG
1 ACACAAGCCCATGTG
95282641 GCTTGGGACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.32, G:0.19, T:0.16
Consensus pattern (16 bp):
ACACAAGCCCATGTGT
Found at i:95289667 original size:226 final size:227
Alignment explanation
Indices: 95289266--95289708 Score: 672
Period size: 226 Copynumber: 2.0 Consensus size: 227
95289256 GGTCTCTACT
* * * * * *
95289266 CGTGTGGACAAAAATAGGCCATTCGCAATGCCAATTTGCCACCCTTTTCTCATGCTCACTTAGCC
1 CGTGTCGACAAAAATAAGCCATTCACAAGGCCAATTTGCCACCCTTTTCTCATACTCACCTAGCC
* * *
95289331 GTCAAAATGGTATAATTTCATCACAAATATGGGCAGCAAAGACATGCCAATTCACAAAAATTTCA
66 ATCAAAATGGTATAATTTCAACACAAATATGGGCAGCAAAAACATGCCAATTCACAAAAATTTCA
* *
95289396 TGCCATTTTATAATCAACAATTTTACTACTTAAATTCTTATTCAAAACATACTAAACCAATATGC
131 TGCCATTTCATAATCAACAATTTTACTACTTAAATCCTTATTCAAAACATACTAAACCAATATGC
95289461 TAAAATCATCAATCTCACATGAGACACACGCC
196 TAAAATCATCAATCTCACATGAGACACACGCC
* * **
95289493 CGTGTCGACAAAAATAAGCCATTTATAAGGCCAATTTGCGTCCCTTTTCTCATACTCACCTAG-C
1 CGTGTCGACAAAAATAAGCCATTCACAAGGCCAATTTGCCACCCTTTTCTCATACTCACCTAGCC
* ** * *
95289557 ATTACTATGGTATCATTTCAACACAAATATGGGCAGCAAAAACATGCCAATTCACAAACATTTCA
66 ATCAAAATGGTATAATTTCAACACAAATATGGGCAGCAAAAACATGCCAATTCACAAAAATTTCA
* *
95289622 TGCCATTTCATAATCAACCATTTTACTACTTAAATCCTTATTCAAAACATACTAAATCAATATGC
131 TGCCATTTCATAATCAACAATTTTACTACTTAAATCCTTATTCAAAACATACTAAACCAATATGC
*
95289687 TAAAATCATCAATCTCATATGA
196 TAAAATCATCAATCTCACATGA
95289709 CTATTAAATA
Statistics
Matches: 193, Mismatches: 23, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
226 140 0.73
227 53 0.27
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.29
Consensus pattern (227 bp):
CGTGTCGACAAAAATAAGCCATTCACAAGGCCAATTTGCCACCCTTTTCTCATACTCACCTAGCC
ATCAAAATGGTATAATTTCAACACAAATATGGGCAGCAAAAACATGCCAATTCACAAAAATTTCA
TGCCATTTCATAATCAACAATTTTACTACTTAAATCCTTATTCAAAACATACTAAACCAATATGC
TAAAATCATCAATCTCACATGAGACACACGCC
Found at i:95290622 original size:43 final size:43
Alignment explanation
Indices: 95290479--95290623 Score: 125
Period size: 43 Copynumber: 3.4 Consensus size: 43
95290469 TCCCATATAT
* * * **
95290479 GGTCTTACATGTTATCAC-ATATCGATGCCGTTGTCCCAGACAA
1 GGTCTTACATGTAATCTCAATA-CAATGCCAATGTCCCAGACAA
* * * * * *
95290522 GGTCTTACAGGAAAT-TGATTA-ATGATGCCAATGTCCCAAACAT
1 GGTCTTACATGTAATCTCAATACA--ATGCCAATGTCCCAGACAA
* *
95290565 TGTCTTACACGTAATCTCAATACAATGCCAATGTCCCAGACAA
1 GGTCTTACATGTAATCTCAATACAATGCCAATGTCCCAGACAA
95290608 GGTCTTACATGTAATC
1 GGTCTTACATGTAATC
95290624 ACATCTCGAT
Statistics
Matches: 77, Mismatches: 20, Indels: 10
0.72 0.19 0.09
Matches are distributed among these distances:
43 72 0.94
44 4 0.05
45 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (43 bp):
GGTCTTACATGTAATCTCAATACAATGCCAATGTCCCAGACAA
Found at i:95296075 original size:22 final size:22
Alignment explanation
Indices: 95296050--95296094 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
95296040 GATGCATTTC
*
95296050 ATGC-ATTTTCATGCCATTAATA
1 ATGCAATTATCATG-CATTAATA
*
95296072 ATGCAATTATCATGCATTCATA
1 ATGCAATTATCATGCATTAATA
95296094 A
1 A
95296095 ATCATACAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.38
Consensus pattern (22 bp):
ATGCAATTATCATGCATTAATA
Done.