Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 286 of 349
Found at i:95692167 original size:26 final size:25
Alignment explanation
Indices: 95692111--95692186 Score: 100
Period size: 26 Copynumber: 3.0 Consensus size: 25
95692101 TTGAAATGAG
* * *
95692111 AATAAAAATCAAAAGAAA-AAGAAA
1 AATAAAAATAAAAATAAATAAAAAA
95692135 AATAAAAATAAAAATAAATAAAATAA
1 AATAAAAATAAAAATAAATAAAA-AA
*
95692161 AATAAAAATAAGAATAAATAAAAAA
1 AATAAAAATAAAAATAAATAAAAAA
95692186 A
1 A
95692187 TAAGAAGATT
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
24 16 0.35
25 6 0.13
26 24 0.52
ACGTcount: A:0.80, C:0.01, G:0.04, T:0.14
Consensus pattern (25 bp):
AATAAAAATAAAAATAAATAAAAAA
Found at i:95692194 original size:21 final size:21
Alignment explanation
Indices: 95692129--95692194 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
95692119 TCAAAAGAAA
95692129 AAGAA-AAATAAAAATAAAAA-
1 AAGAATAAAT-AAAATAAAAAG
* *
95692149 TA-AATAAAATAAAATAAAAAT
1 AAGAAT-AAATAAAATAAAAAG
95692170 AAGAATAAATAAAA-AAATAAG
1 AAGAATAAATAAAATAAA-AAG
95692191 AAGA
1 AAGA
95692195 TTCAATGATC
Statistics
Matches: 38, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
19 2 0.05
20 14 0.37
21 19 0.50
22 3 0.08
ACGTcount: A:0.79, C:0.00, G:0.06, T:0.15
Consensus pattern (21 bp):
AAGAATAAATAAAATAAAAAG
Found at i:95698930 original size:23 final size:23
Alignment explanation
Indices: 95698900--95698959 Score: 120
Period size: 23 Copynumber: 2.6 Consensus size: 23
95698890 TGTCCCTAAG
95698900 CACACGGGCGTGTGCTTTGCCTC
1 CACACGGGCGTGTGCTTTGCCTC
95698923 CACACGGGCGTGTGCTTTGCCTC
1 CACACGGGCGTGTGCTTTGCCTC
95698946 CACACGGGCGTGTG
1 CACACGGGCGTGTG
95698960 AGGCATAACT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.10, C:0.33, G:0.33, T:0.23
Consensus pattern (23 bp):
CACACGGGCGTGTGCTTTGCCTC
Found at i:95706137 original size:40 final size:40
Alignment explanation
Indices: 95706100--95706322 Score: 217
Period size: 40 Copynumber: 5.6 Consensus size: 40
95706090 GCTACTCGTT
* *
95706100 CAAATGCCTTCGGGACATAGCCCGGTTA-TAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGTAATTAGTAACTCGCA
* * *
95706140 CAGATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGTAATTAGTAACTCGCA
*
95706180 CCAATGCCTTCGGGCTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGTAATTAGTAACTCGCA
* * *
95706219 CCAATGCCTTCGGGCTTAGCCC-GAAATTAGTAACTCGTA
1 CAAATGCCTTCGGGCTTAGCCCGGTAATTAGTAACTCGCA
* * * * *
95706258 CAAATGCCTTCGGATCTTAGTCCGG--ATATGGTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGTAAT-TAGTAAC-TCGCA
95706299 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG
95706323 ACATCATTCG
Statistics
Matches: 157, Mismatches: 19, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
38 1 0.01
39 73 0.46
40 75 0.48
41 8 0.05
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGCTTAGCCCGGTAATTAGTAACTCGCA
Found at i:95706200 original size:79 final size:77
Alignment explanation
Indices: 95706100--95706323 Score: 252
Period size: 79 Copynumber: 2.8 Consensus size: 77
95706090 GCTACTCGTT
* *
95706100 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAGATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACA-ATGCCTTCGGGACTTAGCCCGG
*
95706165 ATTTAGTAACTCGCA
63 AATTAGTAACTCGCA
* * *
95706180 CCAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGAA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCA-CAATGCCTTCGGGACTTAGCCCGGA
*
95706244 ATTAGTAACTCGTA
64 ATTAGTAACTCGCA
* * * * * *
95706258 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAATGCCTTCGGGACTTAGCCCGG
95706323 A
63 A
95706324 CATCATTCGA
Statistics
Matches: 122, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
78 34 0.28
79 58 0.48
80 30 0.25
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (77 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAATGCCTTCGGGACTTAGCCCGGAAT
TAGTAACTCGCA
Found at i:95706214 original size:39 final size:40
Alignment explanation
Indices: 95706102--95706323 Score: 242
Period size: 39 Copynumber: 5.6 Consensus size: 40
95706092 TACTCGTTCA
* *
95706102 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA-C
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACC
* *
95706141 AGATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
1 A-ATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACC
95706182 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACC
* * *
95706221 AATGCCTTCGGG-CTTAGCCCGAAATTAGTAACTCGTACA
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACC
* * * *
95706260 AATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA-C
1 AATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCACC
*
95706300 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
95706324 CATCATTCGA
Statistics
Matches: 158, Mismatches: 16, Indels: 16
0.83 0.08 0.08
Matches are distributed among these distances:
38 2 0.01
39 73 0.46
40 73 0.46
41 10 0.06
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACC
Found at i:95714921 original size:15 final size:13
Alignment explanation
Indices: 95714889--95714929 Score: 73
Period size: 13 Copynumber: 3.2 Consensus size: 13
95714879 CCTGACTTCC
95714889 TCACACAGGCGTG
1 TCACACAGGCGTG
95714902 TCACACAGGCGTG
1 TCACACAGGCGTG
*
95714915 TCACACAGCCGTG
1 TCACACAGGCGTG
95714928 TC
1 TC
95714930 TCTTTGGCAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.22, C:0.34, G:0.27, T:0.17
Consensus pattern (13 bp):
TCACACAGGCGTG
Found at i:95721892 original size:5 final size:5
Alignment explanation
Indices: 95721882--95721978 Score: 81
Period size: 5 Copynumber: 18.2 Consensus size: 5
95721872 TATGTCTTTC
* *
95721882 AAAAT AAAAT AATAAT AAAATT GAAAT GAAAAT AAAAAT CAAAAGA AAAAT
1 AAAAT AAAAT AA-AAT AAAA-T AAAAT -AAAAT -AAAAT -AAAA-T AAAAT
*
95721933 AAAAAT AAAAT -AAAG AAAAT AAAAT AAGAAT -AAAT AAAAT AAAAT A
1 -AAAAT AAAAT AAAAT AAAAT AAAAT AA-AAT AAAAT AAAAT AAAAT A
95721979 GGAGGATTCA
Statistics
Matches: 76, Mismatches: 8, Indels: 16
0.76 0.08 0.16
Matches are distributed among these distances:
4 6 0.08
5 36 0.47
6 34 0.45
ACGTcount: A:0.75, C:0.01, G:0.05, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:95721900 original size:11 final size:10
Alignment explanation
Indices: 95721882--95721978 Score: 81
Period size: 12 Copynumber: 9.1 Consensus size: 10
95721872 TATGTCTTTC
95721882 AAAATAAAAT
1 AAAATAAAAT
95721892 AATAATAAAATT
1 AA-AATAAAA-T
*
95721904 GAAATGAAAAT
1 AAAAT-AAAAT
*
95721915 AAAAATCAAAAGA
1 -AAAAT-AAAA-T
95721928 AAAATAAAAAT
1 AAAAT-AAAAT
*
95721939 AAAAT-AAAG
1 AAAATAAAAT
95721948 AAAATAAAAT
1 AAAATAAAAT
95721958 AAGAAT-AAAT
1 AA-AATAAAAT
95721968 AAAATAAAAT
1 AAAATAAAAT
95721978 A
1 A
95721979 GGAGGATTCA
Statistics
Matches: 71, Mismatches: 8, Indels: 16
0.75 0.08 0.17
Matches are distributed among these distances:
9 11 0.15
10 18 0.25
11 19 0.27
12 23 0.32
ACGTcount: A:0.75, C:0.01, G:0.05, T:0.19
Consensus pattern (10 bp):
AAAATAAAAT
Found at i:95721914 original size:6 final size:6
Alignment explanation
Indices: 95721882--95721966 Score: 59
Period size: 6 Copynumber: 14.3 Consensus size: 6
95721872 TATGTCTTTC
* * * * * *
95721882 AAAAT- AAAATA ATAAT- AAAATT GAAATG AAAATA AAAATC AAAAGA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
* *
95721928 AAAATA AAAAT- AAAATA AAGAAAA TAAAATA AGAATA AA
1 AAAATA AAAATA AAAATA AA-AATA -AAAATA AAAATA AA
95721967 TAAAATAAAA
Statistics
Matches: 61, Mismatches: 14, Indels: 9
0.73 0.17 0.11
Matches are distributed among these distances:
5 14 0.23
6 39 0.64
7 6 0.10
8 2 0.03
ACGTcount: A:0.75, C:0.01, G:0.06, T:0.18
Consensus pattern (6 bp):
AAAATA
Found at i:95721929 original size:17 final size:16
Alignment explanation
Indices: 95721882--95721942 Score: 59
Period size: 17 Copynumber: 3.6 Consensus size: 16
95721872 TATGTCTTTC
*
95721882 AAAATAAAATAATAATA
1 AAAATAAAAGAA-AATA
* *
95721899 AAATTGAAATGAAAATA
1 AAAAT-AAAAGAAAATA
95721916 AAAATCAAAAGAAAAATA
1 AAAAT-AAAAG-AAAATA
95721934 AAAATAAAA
1 AAAATAAAA
95721943 TAAAGAAAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
17 20 0.56
18 16 0.44
ACGTcount: A:0.75, C:0.02, G:0.05, T:0.18
Consensus pattern (16 bp):
AAAATAAAAGAAAATA
Found at i:95721953 original size:9 final size:9
Alignment explanation
Indices: 95721935--95721975 Score: 55
Period size: 9 Copynumber: 4.3 Consensus size: 9
95721925 AGAAAAATAA
95721935 AAATAAAAT
1 AAATAAAAT
*
95721944 AAAGAAAAT
1 AAATAAAAT
95721953 AAAATAAGAAT
1 -AAATAA-AAT
95721964 AAATAAAAT
1 AAATAAAAT
95721973 AAA
1 AAA
95721976 ATAGGAGGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
9 14 0.50
10 11 0.39
11 3 0.11
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (9 bp):
AAATAAAAT
Found at i:95732330 original size:34 final size:34
Alignment explanation
Indices: 95732287--95732356 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
95732277 TCATAGAGCC
*
95732287 TTATAAGGGACAATGTGAATGATTTGAATGAGTT
1 TTATAAGGGACAATGTGAATGATTTCAATGAGTT
95732321 TTATAAGGGACAATGTGAATGATTTCAATGAGTT
1 TTATAAGGGACAATGTGAATGATTTCAATGAGTT
95732355 TT
1 TT
95732357 TTATATGAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.34, C:0.04, G:0.24, T:0.37
Consensus pattern (34 bp):
TTATAAGGGACAATGTGAATGATTTCAATGAGTT
Found at i:95738237 original size:43 final size:42
Alignment explanation
Indices: 95738138--95738217 Score: 108
Period size: 43 Copynumber: 1.9 Consensus size: 42
95738128 ATCGTGATGT
* * *
95738138 GATTACATGTAAGA-CATGTCTGAGACATTGGCATTGTAGTAA
1 GATTACGTGTAAGACCATGTCTAAGACATTGGCATCGTA-TAA
*
95738180 GATTACGTGCAAGACCATGTCTAAGACATTGGCATCGT
1 GATTACGTGTAAGACCATGTCTAAGACATTGGCATCGT
95738218 TAATCGATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
42 12 0.36
43 21 0.64
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (42 bp):
GATTACGTGTAAGACCATGTCTAAGACATTGGCATCGTATAA
Found at i:95738300 original size:18 final size:18
Alignment explanation
Indices: 95738277--95738312 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
95738267 ATAACATGTA
95738277 AGACCATATCTTGGATAT
1 AGACCATATCTTGGATAT
95738295 AGACCATATCTTGGATAT
1 AGACCATATCTTGGATAT
95738313 GACATTGTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (18 bp):
AGACCATATCTTGGATAT
Found at i:95742169 original size:27 final size:27
Alignment explanation
Indices: 95742122--95742267 Score: 143
Period size: 27 Copynumber: 5.4 Consensus size: 27
95742112 ACAGTCTTGG
* *
95742122 TGGACCTGCCATAT-AGATAGTCCTAA
1 TGGACCTTCCACATAAGATAGTCCTAA
*
95742148 TGGACCTTTCACATAAGATAGTCCTAA
1 TGGACCTTCCACATAAGATAGTCCTAA
* *
95742175 CGGACCTTCCACATAATATAGT-CTATA
1 TGGACCTTCCACATAAGATAGTCCTA-A
* * ** *
95742202 TGGACCCTCCACATATGATAGTATTGA
1 TGGACCTTCCACATAAGATAGTCCTAA
* * *
95742229 TGGACCTTCCATACATGATAGTCCTAA
1 TGGACCTTCCACATAAGATAGTCCTAA
*
95742256 TAGACCTTCCAC
1 TGGACCTTCCAC
95742268 TTGTATGGTA
Statistics
Matches: 97, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
26 14 0.14
27 82 0.85
28 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (27 bp):
TGGACCTTCCACATAAGATAGTCCTAA
Found at i:95744113 original size:48 final size:46
Alignment explanation
Indices: 95743986--95744155 Score: 146
Period size: 46 Copynumber: 3.7 Consensus size: 46
95743976 CATGCAGCCG
* * * * *
95743986 ATGCGTGTCCCAGACATGTCTTAGACTGGCT-TACATCTCGAGGCCG
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCAAGGCCA
* * * * *
95744032 ATGCATGTCTCAGACATATCTTACACTAACTCTCGTCTCAATGCCA
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGCCA
* ** *
95744078 ATGTCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-GTGGCCG
1 ATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-CTCAAGGCCA
* *
95744126 ATGCATGTCCTAGACATGCCTTACACTAGC
1 ATGCATGTCCCAGACATGTCTTACACTAGC
95744156 ACACAAATAA
Statistics
Matches: 99, Mismatches: 21, Indels: 8
0.77 0.16 0.06
Matches are distributed among these distances:
46 49 0.49
47 27 0.27
48 22 0.22
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGCCA
Found at i:95747808 original size:43 final size:43
Alignment explanation
Indices: 95747760--95747855 Score: 133
Period size: 43 Copynumber: 2.2 Consensus size: 43
95747750 GAGGGGACAC
* *
95747760 ATGCCCGTGTGGCTAGGCTGTGTGTCTCAAACA-G-CCAAGGGAA
1 ATGCCCGTGTGGCCAGGCCGTGTGTCTC--ACATGACCAAGGGAA
*
95747803 ATGCCCGTGTGGCCAGGCCGTGTGTCTCACATGACCAAGGGAC
1 ATGCCCGTGTGGCCAGGCCGTGTGTCTCACATGACCAAGGGAA
95747846 ATGCCCGTGT
1 ATGCCCGTGT
95747856 CTCACAACAT
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
41 3 0.06
42 1 0.02
43 44 0.92
ACGTcount: A:0.20, C:0.27, G:0.32, T:0.21
Consensus pattern (43 bp):
ATGCCCGTGTGGCCAGGCCGTGTGTCTCACATGACCAAGGGAA
Found at i:95749370 original size:27 final size:27
Alignment explanation
Indices: 95749160--95749362 Score: 325
Period size: 27 Copynumber: 7.5 Consensus size: 27
95749150 ATTACGAAAG
*
95749160 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
95749187 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
95749214 TACCCTCAATTTATAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
95749241 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
95749268 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
95749295 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * * *
95749322 TACCTTCGATTTACAGATTTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
95749349 TACCCTCGATTTAT
1 TACCCTCGATTTAT
95749363 TATATTACTA
Statistics
Matches: 161, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 161 1.00
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCGTTT
Found at i:95749388 original size:27 final size:27
Alignment explanation
Indices: 95749366--95749502 Score: 175
Period size: 27 Copynumber: 5.1 Consensus size: 27
95749356 GATTTATTAT
* ** *
95749366 ATTACTAAAATACCATTGGTTTACAAA
1 ATTACCAAAATACCCCTGGTTTATAAA
*
95749393 ATTACCAAAATACCCCTGGTTTGTAAA
1 ATTACCAAAATACCCCTGGTTTATAAA
* *
95749420 ATTACTAAAATACCCCTGGTTTGTAAA
1 ATTACCAAAATACCCCTGGTTTATAAA
* **
95749447 ATTACCAAAATACCCCTGGCTTGCAAA
1 ATTACCAAAATACCCCTGGTTTATAAA
*
95749474 ATTACCAAAATACCCCTGATTTATAAA
1 ATTACCAAAATACCCCTGGTTTATAAA
95749501 AT
1 AT
95749503 ATCGAAATAC
Statistics
Matches: 97, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 97 1.00
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
ATTACCAAAATACCCCTGGTTTATAAA
Found at i:95749396 original size:81 final size:81
Alignment explanation
Indices: 95749160--95749398 Score: 237
Period size: 81 Copynumber: 3.0 Consensus size: 81
95749150 ATTACGAAAG
* * * *** * *
95749160 TACCCTCAATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCAAAATACCATCGATT
* * *
95749225 TATAGAATTATCGTTT
66 TACAAAATTACCGTTT
* **** *
95749241 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCAAAATACCATCGATT
* *
95749306 TATAGAATTACCGTTT
66 TACAAAATTACCGTTT
* * * * * *
95749322 TACCTTCGATTTACAGATTTACCATTTTACCCTCGATTTATTA-TATTACTAAAATACCATTGGT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTA-TAGAATTACCAAAATACCATCGAT
95749386 TTACAAAATTACC
65 TTACAAAATTACC
95749399 AAAATACCCC
Statistics
Matches: 138, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
81 136 0.99
82 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCAAAATACCATCGATT
TACAAAATTACCGTTT
Found at i:95749434 original size:81 final size:81
Alignment explanation
Indices: 95749351--95749502 Score: 196
Period size: 81 Copynumber: 1.9 Consensus size: 81
95749341 TACCATTTTA
* * * * * * *
95749351 CCCTCGATTTATTATATTACTAAAATACCATTGGTTTACAAAATTACCAAAATACCCCTGGTTTG
1 CCCT-GATTTATAAAATTACCAAAATACCACTGGCTTACAAAATTACCAAAATACCCCTGATTTA
95749416 TAAAATTACTAAAATAC
65 TAAAATTACTAAAATAC
* * * *
95749433 CCCTGGTTTGTAAAATTACCAAAATACCCCTGGCTTGCAAAATTACCAAAATACCCCTGATTTAT
1 CCCTGATTTATAAAATTACCAAAATACCACTGGCTTACAAAATTACCAAAATACCCCTGATTTAT
95749498 AAAAT
66 AAAAT
95749503 ATCGAAATAC
Statistics
Matches: 59, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
81 55 0.93
82 4 0.07
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.32
Consensus pattern (81 bp):
CCCTGATTTATAAAATTACCAAAATACCACTGGCTTACAAAATTACCAAAATACCCCTGATTTAT
AAAATTACTAAAATAC
Found at i:95749563 original size:27 final size:27
Alignment explanation
Indices: 95749533--95749774 Score: 295
Period size: 27 Copynumber: 9.0 Consensus size: 27
95749523 TAAAATATCA
* * *
95749533 AAATACCCATGTAGGGTTGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
95749560 AAATAACCCTGTAGGGTATAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
*
95749587 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
95749614 AAATAACCCTATAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * **
95749641 AAATACCCCTATAGGGTAAAATTACTT
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
95749668 AAATACCCCTGTAGGGAAAAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
** * *
95749695 AAATACCTTTGTAGGGTAGAAATACTG
1 AAATACCCCTGTAGGGTAGAATTACCG
95749722 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * *
95749749 AGATACCCTTGTAGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
95749775 ATTTTGCCCC
Statistics
Matches: 183, Mismatches: 32, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 183 1.00
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:95750053 original size:24 final size:25
Alignment explanation
Indices: 95749977--95750046 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
95749967 AGGAAGTGCT
** * *
95749977 AAAAGGGCAATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
95750002 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
95750027 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
95750047 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.23
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:95750059 original size:24 final size:24
Alignment explanation
Indices: 95749987--95750073 Score: 79
Period size: 25 Copynumber: 3.5 Consensus size: 24
95749977 AAAAGGGCAA
*
95749987 TGCCCCAGTTTACCGAAAAG-GGCTT
1 TGCCCCAG-TTATC-AAAAGAGGCTT
95750012 TGCCCCAGTTTATCAAAA-AGGGCTT
1 TGCCCCAG-TTATCAAAAGA-GGCTT
* *
95750037 TGCCCCAGTTATTAAAAGAGGCTA
1 TGCCCCAGTTATCAAAAGAGGCTT
*
95750061 GGCCTCCAGTTAT
1 TGCC-CCAGTTAT
95750074 ATGATAAAGC
Statistics
Matches: 54, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
24 19 0.35
25 35 0.65
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.26
Consensus pattern (24 bp):
TGCCCCAGTTATCAAAAGAGGCTT
Found at i:95750320 original size:31 final size:31
Alignment explanation
Indices: 95750267--95750349 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
95750257 CGCTTACAGT
* *
95750267 AAAGGCATCGG-CCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
95750297 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
95750328 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
95750350 TCGAGACTGA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
30 15 0.30
31 35 0.70
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:95752660 original size:27 final size:27
Alignment explanation
Indices: 95752630--95752741 Score: 125
Period size: 27 Copynumber: 4.1 Consensus size: 27
95752620 ATTACGAAAG
* *
95752630 TACCCTCAATTTATAGAATTATTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* **
95752657 TACCCTTGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACTGTTT
*
95752684 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* * * **
95752711 TTCCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACTGTTT
95752738 TACC
1 TACC
95752742 ATTTTACCCT
Statistics
Matches: 71, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 71 1.00
ACGTcount: A:0.29, C:0.20, G:0.07, T:0.45
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACTGTTT
Found at i:95752688 original size:54 final size:54
Alignment explanation
Indices: 95752630--95752741 Score: 161
Period size: 54 Copynumber: 2.1 Consensus size: 54
95752620 ATTACGAAAG
* * * *
95752630 TACCCTCAATTTATAGAATTATTGTTTTACCCTTGATTTATAGAATTACCATTT
1 TACCCTCAATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTACCATTT
** *
95752684 TACCCTTGATTTATAGAATTACTGTTTTTCCCTCGATTTACAAAATTACCATTT
1 TACCCTCAATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTACCATTT
95752738 TACC
1 TACC
95752742 ATTTTACCCT
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.29, C:0.20, G:0.07, T:0.45
Consensus pattern (54 bp):
TACCCTCAATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTACCATTT
Found at i:95752833 original size:27 final size:27
Alignment explanation
Indices: 95752757--95752897 Score: 119
Period size: 26 Copynumber: 5.3 Consensus size: 27
95752747 ACCCTATGGT
* * *
95752757 GAATTACCGAGATA-CCCTATAGGGTA
1 GAATTACCAAAATACCCCTGTAGGGTA
* * **
95752783 AAATTA-CTAAATACCCCTACAGGGTA
1 GAATTACCAAAATACCCCTGTAGGGTA
*
95752809 GAATTACCAAAATACCCTTGTAGGGTA
1 GAATTACCAAAATACCCCTGTAGGGTA
* *
95752836 GAAATA-CTAAATACCCCTGTAGGGTA
1 GAATTACCAAAATACCCCTGTAGGGTA
* * * *
95752862 GAATTACCGAGATACCCTTGTGGGGT-
1 GAATTACCAAAATACCCCTGTAGGGTA
95752888 GAAATTACCA
1 G-AATTACCA
95752898 TTTTGCCCCT
Statistics
Matches: 93, Mismatches: 18, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
25 5 0.05
26 45 0.48
27 43 0.46
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
GAATTACCAAAATACCCCTGTAGGGTA
Found at i:95752847 original size:53 final size:53
Alignment explanation
Indices: 95752757--95752892 Score: 188
Period size: 53 Copynumber: 2.6 Consensus size: 53
95752747 ACCCTATGGT
*
95752757 GAATTACCGAGATACCC-TATAGGGTA-AAATTACTAAATACCCCTACAGGGTA
1 GAATTACCGAGATACCCTTGTAGGGTAGAAA-TACTAAATACCCCTACAGGGTA
* * **
95752809 GAATTACCAAAATACCCTTGTAGGGTAGAAATACTAAATACCCCTGTAGGGTA
1 GAATTACCGAGATACCCTTGTAGGGTAGAAATACTAAATACCCCTACAGGGTA
*
95752862 GAATTACCGAGATACCCTTGTGGGGT-GAAAT
1 GAATTACCGAGATACCCTTGTAGGGTAGAAAT
95752893 TACCATTTTG
Statistics
Matches: 74, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
52 20 0.27
53 51 0.69
54 3 0.04
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (53 bp):
GAATTACCGAGATACCCTTGTAGGGTAGAAATACTAAATACCCCTACAGGGTA
Found at i:95753443 original size:31 final size:30
Alignment explanation
Indices: 95753361--95753443 Score: 130
Period size: 30 Copynumber: 2.7 Consensus size: 30
95753351 CGCTTACAGT
*
95753361 AAAGGCATCGGCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCAGTGATATGATTTATGA
95753391 AAAGGCTTCGGCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCAGTGATATGATTTATGA
* *
95753421 AAAGGCTTTGGCCCAGTAATATG
1 AAAGGCTTCGG-CCAGTGATATG
95753444 TCGAGACTAA
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
30 39 0.80
31 10 0.20
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (30 bp):
AAAGGCTTCGGCCAGTGATATGATTTATGA
Found at i:95755758 original size:27 final size:27
Alignment explanation
Indices: 95755698--95755931 Score: 249
Period size: 27 Copynumber: 8.6 Consensus size: 27
95755688 TACCAAAGTA
*
95755698 CCTCGATTTATAGAATTACTG-TTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
*
95755724 CCTTGATTTATAGAATTACCGTTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
* *
95755751 CCACGATTTATGGAATTACCGTTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
* * * * *
95755778 CTTTGATTTACAAAAATTACCATTTTACC
1 CCTCGATTTA-TAGAATTACCGTTTTA-C
* *
95755807 CCTCGATTTATAG-ATCACC-CTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
* *
95755832 CCTCGATTTATAGAATTACCATTTTAG
1 CCTCGATTTATAGAATTACCGTTTTAC
95755859 CCTCGATTTATAGAATTACCGTTTTAAC
1 CCTCGATTTATAGAATTACCGTTTT-AC
* * * *
95755887 CTTCAATTTACAGAATTTACCGTTTTAG
1 CCTCGATTTATAGAA-TTACCGTTTTAC
*
95755915 CCTCGATTTATAAAATT
1 CCTCGATTTATAGAATT
95755932 TCTAAAATAC
Statistics
Matches: 170, Mismatches: 31, Indels: 13
0.79 0.14 0.06
Matches are distributed among these distances:
25 14 0.08
26 28 0.16
27 71 0.42
28 38 0.22
29 19 0.11
ACGTcount: A:0.29, C:0.21, G:0.10, T:0.41
Consensus pattern (27 bp):
CCTCGATTTATAGAATTACCGTTTTAC
Found at i:95755919 original size:108 final size:109
Alignment explanation
Indices: 95755698--95755926 Score: 309
Period size: 108 Copynumber: 2.1 Consensus size: 109
95755688 TACCAAAGTA
* ** * * *
95755698 CCTCGATTTATAGAATTACTGTTTACCCTTGATTTATAGAATTACCGTTTTACCCACGATTTATG
1 CCTCGATTTATAGAATCACCCTTTACCCTCGATTTATAGAATTACCATTTTACCCACGATTTATA
**
95755763 GAATTACCGTTTTACCTTTGATTTACAAAAATTACCATTTTACC
66 GAATTACCGTTTTACCTTCAATTTACAAAAATTACCATTTTACC
* *
95755807 CCTCGATTTATAG-ATCACCCTTTACCCTCGATTTATAGAATTACCATTTTAGCCTCGATTTATA
1 CCTCGATTTATAGAATCACCCTTTACCCTCGATTTATAGAATTACCATTTTACCCACGATTTATA
* * * *
95755871 GAATTACCGTTTTAACCTTCAATTTACAGAATTTACCGTTTTA-G
66 GAATTACCGTTTT-ACCTTCAATTTACAAAAATTACCATTTTACC
95755915 CCTCGATTTATA
1 CCTCGATTTATA
95755927 AAATTTCTAA
Statistics
Matches: 105, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
108 68 0.65
109 37 0.35
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (109 bp):
CCTCGATTTATAGAATCACCCTTTACCCTCGATTTATAGAATTACCATTTTACCCACGATTTATA
GAATTACCGTTTTACCTTCAATTTACAAAAATTACCATTTTACC
Found at i:95755965 original size:27 final size:27
Alignment explanation
Indices: 95755921--95756072 Score: 93
Period size: 26 Copynumber: 5.8 Consensus size: 27
95755911 TTAGCCTCGA
* * * *
95755921 TTTATAAAATTTCTAAAATACCATTGG
1 TTTACAAAATTACCAAAATACCACTGG
*
95755948 TTTACAAAATTACCAAAAATACC-C-AG
1 TTTACAAAATTACC-AAAATACCACTGG
* * ** *
95755974 ATCAGTAAATTACC-AAA-ACCCCTGG
1 TTTACAAAATTACCAAAATACCACTGG
** * *
95755999 TTT-GTAAATTACTAAAATACCCCTGG
1 TTTACAAAATTACCAAAATACCACTGG
95756025 TTGT--AAAATTACCAAAATACCACTGG
1 TT-TACAAAATTACCAAAATACCACTGG
* *
95756051 CTTGCAAAATTACCAAAATACC
1 TTTACAAAATTACCAAAATACC
95756073 CCTGATTTGT
Statistics
Matches: 100, Mismatches: 17, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
23 3 0.03
24 13 0.13
25 6 0.06
26 41 0.41
27 29 0.29
28 8 0.08
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.28
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCACTGG
Found at i:95756033 original size:26 final size:27
Alignment explanation
Indices: 95755980--95756098 Score: 138
Period size: 27 Copynumber: 4.6 Consensus size: 27
95755970 CCAGATCAGT
*
95755980 AAATTACC-AAA-ACCCCTGGTTTGT-
1 AAATTACCAAAATACCCCTGGCTTGTA
*
95756004 AAATTACTAAAATACCCCTGG-TTGTA
1 AAATTACCAAAATACCCCTGGCTTGTA
* *
95756030 AAATTACCAAAATACCACTGGCTTGCA
1 AAATTACCAAAATACCCCTGGCTTGTA
**
95756057 AAATTACCAAAATACCCCTGATTTGTA
1 AAATTACCAAAATACCCCTGGCTTGTA
* *
95756084 AAATTATCGAAATAC
1 AAATTACCAAAATAC
95756099 TATCGATTTG
Statistics
Matches: 81, Mismatches: 10, Indels: 5
0.84 0.10 0.05
Matches are distributed among these distances:
24 7 0.09
25 7 0.09
26 27 0.33
27 40 0.49
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.28
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGCTTGTA
Found at i:95756086 original size:27 final size:27
Alignment explanation
Indices: 95755953--95756129 Score: 136
Period size: 27 Copynumber: 6.8 Consensus size: 27
95755943 ATTGGTTTAC
* **
95755953 AAAATTACCAAAAATA-CCCAGATCAGT
1 AAAATTACC-AAAATACCCCTGATTTGT
*
95755980 -AAATTACC-AAA-ACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* *
95756004 -AAATTACTAAAATACCCCTG-GTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* ** *
95756029 AAAATTACCAAAATACCACTGGCTTGC
1 AAAATTACCAAAATACCCCTGATTTGT
95756056 AAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* * **
95756083 AAAATTATCGAAATA-CTATCGATTTGT
1 AAAATTACCAAAATACCCCT-GATTTGT
* *
95756110 AAAA-TATCGAAATACCCCTG
1 AAAATTACCAAAATACCCCTG
95756130 TAGGGTAGAA
Statistics
Matches: 123, Mismatches: 20, Indels: 15
0.78 0.13 0.09
Matches are distributed among these distances:
23 1 0.01
24 17 0.14
25 7 0.06
26 46 0.37
27 52 0.42
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.27
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTGT
Found at i:95756230 original size:28 final size:27
Alignment explanation
Indices: 95756118--95756385 Score: 283
Period size: 27 Copynumber: 10.0 Consensus size: 27
95756108 GTAAAATATC
95756118 GAAATACCCCTGTAGGGTAGAATTA-T
1 GAAATACCCCTGTAGGGTAGAATTACT
* *
95756144 CGAAATACCCCTGTA-GGTATAATT-CC
1 -GAAATACCCCTGTAGGGTAGAATTACT
* * *
95756170 GAAATATCCCTATAGGGTATAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
*
95756197 GAAATATCCCTGTAGGGTTAGAATTACT
1 GAAATACCCCTGTAGGG-TAGAATTACT
* *
95756225 GAAATAACCCTGTAGGGATAGAATTACC
1 GAAATACCCCTGTAGGG-TAGAATTACT
* * *
95756253 AAAATACCCCTATAGGGTAAAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACT
*
95756280 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACT
* * * *
95756307 AAAATACCCTTGTCGGGTAGAAATACT
1 GAAATACCCCTGTAGGGTAGAATTACT
* *
95756334 G-AATACCCCTGTAGGGTATAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACT
* * * *
95756360 GATATACCCTTGTGGGGTAAAATTAC
1 GAAATACCCCTGTAGGGTAGAATTAC
95756386 CATTTTGCCC
Statistics
Matches: 202, Mismatches: 34, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
25 12 0.06
26 38 0.19
27 104 0.51
28 48 0.24
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACT
Found at i:95756367 original size:80 final size:78
Alignment explanation
Indices: 95756118--95756387 Score: 272
Period size: 80 Copynumber: 3.4 Consensus size: 78
95756108 GTAAAATATC
* * * * * * *
95756118 GAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGGTA-TAATTCCGAAATATCCCTA
1 GAAATACCCCTGTAGGGTAGAATTACCAAAATA-CCCTGTGGGTAGAAATACAG-AATACCCCTA
95756182 TAGGGTATAATTACT
64 TAGGGTATAATTACT
* ** * *
95756197 GAAATATCCCTGTAGGGTTAGAATTACTGAAATAACCCTGTAGGGATAGAATTACCAAAATACCC
1 GAAATACCCCTGTAGGG-TAGAATTACCAAAAT-ACCCTGT-GGG-TAGAAATA-CAGAATACCC
*
95756262 CTATAGGGTAAAATTACT
61 CTATAGGGTATAATTACT
* *
95756280 GAAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTGTCGGGTAGAAATACTGAATACCCCTG
1 GAAATACCCCTGTAGGGTAGAATTACCAAAATACCC-TGT-GGGTAGAAATACAGAATACCCCTA
*
95756345 TAGGGTATAATTACC
64 TAGGGTATAATTACT
* * * *
95756360 GATATACCCTTGTGGGGTAAAATTACCA
1 GAAATACCCCTGTAGGGTAGAATTACCA
95756388 TTTTGCCCCT
Statistics
Matches: 159, Mismatches: 25, Indels: 13
0.81 0.13 0.07
Matches are distributed among these distances:
79 16 0.10
80 66 0.42
81 14 0.09
82 21 0.13
83 41 0.26
84 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (78 bp):
GAAATACCCCTGTAGGGTAGAATTACCAAAATACCCTGTGGGTAGAAATACAGAATACCCCTATA
GGGTATAATTACT
Found at i:95756627 original size:25 final size:24
Alignment explanation
Indices: 95756589--95756682 Score: 109
Period size: 25 Copynumber: 3.8 Consensus size: 24
95756579 AGGAAGTGCT
**
95756589 AAAAGGGCAATGCCCCAGTTTAACG
1 AAAAGGGCTTTGCCCCAGTTT-ACG
*
95756614 AAAAGGTCTTTGCCCCAGTTTACTG
1 AAAAGGGCTTTGCCCCAGTTTAC-G
* *
95756639 AAAAGGGCTTTG-CCCAGTTTGTCA
1 AAAAGGGCTTTGCCCCAGTTT-ACG
95756663 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
95756683 ATAAAAGAGG
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
24 22 0.37
25 38 0.63
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACG
Found at i:95759142 original size:27 final size:27
Alignment explanation
Indices: 95759122--95759385 Score: 359
Period size: 27 Copynumber: 9.8 Consensus size: 27
95759112 ATTACCAAAG
* **
95759122 TACCTTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
95759149 TACCCTTGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
95759176 TACCCTCGATTTAT-GGATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
95759202 TACCTTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
95759229 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
95759256 TACCCTCGATTTATAGAATTACCCTTT
1 TACCCTCGATTTATAGAATTACCATTT
95759283 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
95759310 TATCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* * * *
95759337 TACCTTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
95759364 TAGCCTCGATTTATAAAATTAC
1 TACCCTCGATTTATAGAATTAC
95759386 TAAAATACCA
Statistics
Matches: 210, Mismatches: 26, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
26 22 0.10
27 188 0.90
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:95759403 original size:27 final size:27
Alignment explanation
Indices: 95759373--95759552 Score: 161
Period size: 27 Copynumber: 6.8 Consensus size: 27
95759363 TTAGCCTCGA
* **
95759373 TTTATAAAATTACTAAAATACCATTGG
1 TTTATAAAATTACCAAAATACCCCTGG
* *
95759400 TTTACAAAATTACCAAAATA-CCCTCG
1 TTTATAAAATTACCAAAATACCCCTGG
* * *
95759426 ATCAGT-AAATTACC-AAA-ACCCCTAG
1 TTTA-TAAAATTACCAAAATACCCCTGG
* *
95759451 TTTGTAAAATTACTAAAATACCCCTGG
1 TTTATAAAATTACCAAAATACCCCTGG
*
95759478 TTTGTAAAATTACCAAAATACCCCTGG
1 TTTATAAAATTACCAAAATACCCCTGG
* ** *
95759505 CTTGCAAAATTACCAAAATACCCCTGA
1 TTTATAAAATTACCAAAATACCCCTGG
* * *
95759532 TTTGTAAAATTATCGAAATAC
1 TTTATAAAATTACCAAAATAC
95759553 TATCGATTTG
Statistics
Matches: 126, Mismatches: 22, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
24 2 0.02
25 16 0.13
26 16 0.13
27 92 0.73
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.29
Consensus pattern (27 bp):
TTTATAAAATTACCAAAATACCCCTGG
Found at i:95759411 original size:81 final size:81
Alignment explanation
Indices: 95759156--95759414 Score: 252
Period size: 81 Copynumber: 3.2 Consensus size: 81
95759146 TTTTACCCTT
* * * * * * * *
95759156 GATTTATAGAATTACCATTTTACCCTCGATTTA-TGGATTACCGTTTTACCTTCGATTTACAGAA
1 GATTTACAGAATTACCATTTTACCCTCAATTTACAGAATTACCCTTTTACCCTCGATTTATAAAA
*** *
95759220 TTACCATTTTACCCTC
66 TTACCAAAATATCCTC
* * *
95759236 GATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCCTTTTACCCTCGATTTATAGAA
1 GATTTACAGAATTACCATTTTACCCTCAATTTACAGAATTACCCTTTTACCCTCGATTTATAAAA
***
95759301 TTACCATTTTATCCTC
66 TTACCAAAATATCCTC
* * * * *
95759317 GATTTATAGAATTACCGTTTTACCTTCAATTTACAGAATTACCGTTTTAGCCTCGATTTATAAAA
1 GATTTACAGAATTACCATTTTACCCTCAATTTACAGAATTACCCTTTTACCCTCGATTTATAAAA
* *
95759382 TTACTAAAATA-CCATT
66 TTACCAAAATATCC-TC
* *
95759398 GGTTTACAAAATTACCA
1 GATTTACAGAATTACCA
95759415 AAATACCCTC
Statistics
Matches: 153, Mismatches: 24, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
80 34 0.22
81 119 0.78
ACGTcount: A:0.31, C:0.21, G:0.09, T:0.40
Consensus pattern (81 bp):
GATTTACAGAATTACCATTTTACCCTCAATTTACAGAATTACCCTTTTACCCTCGATTTATAAAA
TTACCAAAATATCCTC
Found at i:95759568 original size:54 final size:53
Alignment explanation
Indices: 95759451--95759610 Score: 144
Period size: 54 Copynumber: 3.0 Consensus size: 53
95759441 AAACCCCTAG
* * * * *
95759451 TTTGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGG
1 TTTGTAAAATTACCAAAATACCCCT-GTTTGTAAAATTATCGAAATACACCTGA
* * *
95759505 CTTGCAAAATTACCAAAATACCCCTGATTTGTAAAATTATCGAAATACTATC-GA
1 TTTGTAAAATTACCAAAATACCCCTG-TTTGTAAAATTATCGAAATAC-ACCTGA
* * ** * *
95759559 TTTGTAAAA-TATCGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTG
1 TTTGTAAAATTACCAAAATACCCCTGT-TTGTAAAATTATCGAAATACACCTG
95759611 TAGGGTATAA
Statistics
Matches: 85, Mismatches: 17, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
52 2 0.02
53 33 0.39
54 49 0.58
55 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.12, T:0.30
Consensus pattern (53 bp):
TTTGTAAAATTACCAAAATACCCCTGTTTGTAAAATTATCGAAATACACCTGA
Found at i:95759606 original size:27 final size:27
Alignment explanation
Indices: 95759571--95759840 Score: 335
Period size: 27 Copynumber: 10.0 Consensus size: 27
95759561 TGTAAAATAT
*
95759571 CGAAATACCCCTGTAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
95759598 CGAAATACCCCTGTAGGGTATAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
95759625 CGAAATATCCCTGTAGGGTATAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
95759652 CGAAATATCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
95759679 TGAAATAACCCTGTAGCGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
95759706 CAAAATACCCCTATAGGGTAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
95759733 TGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * * *
95759760 CAAAATACCCTTGTCGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
95759787 TG-AATACCCCTGTAGGGTATAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * * *
95759813 CGATATACCCTTGTGGGGTAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
95759840 C
1 C
95759841 ATTTTGCCCC
Statistics
Matches: 209, Mismatches: 33, Indels: 2
0.86 0.14 0.01
Matches are distributed among these distances:
26 21 0.10
27 188 0.90
ACGTcount: A:0.34, C:0.20, G:0.19, T:0.26
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:95760071 original size:25 final size:25
Alignment explanation
Indices: 95760043--95760137 Score: 145
Period size: 25 Copynumber: 3.8 Consensus size: 25
95760033 AGGAAGTGCT
**
95760043 AAAAGGGCAATGCCCCAGTTTAACG
1 AAAAGGGCTTTGCCCCAGTTTAACG
*
95760068 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTAACG
* *
95760093 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTAACG
95760118 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
95760138 ATTAAAAGAG
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 65 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.23
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTAACG
Found at i:95762644 original size:27 final size:27
Alignment explanation
Indices: 95762569--95762825 Score: 322
Period size: 27 Copynumber: 9.6 Consensus size: 27
95762559 CAAAGTAACT
*
95762569 TCGATTTATAGAATTACTGTTTTA-CC
1 TCGATTTATAGAATTACCGTTTTACCC
* * *
95762595 TTGATTTATAGAATTACCATTTAACCC
1 TCGATTTATAGAATTACCGTTTTACCC
* *
95762622 TCGATTTAT-GGATTACCGTTTTACCT
1 TCGATTTATAGAATTACCGTTTTACCC
* *
95762648 TCGATTTACAGAATTACCATTTTACCC
1 TCGATTTATAGAATTACCGTTTTACCC
* *
95762675 TCGATTTACAGAATTACCATTTTACCC
1 TCGATTTATAGAATTACCGTTTTACCC
*
95762702 TCGATTTATAGAATTACCCTTTTACCC
1 TCGATTTATAGAATTACCGTTTTACCC
* *
95762729 TCGATTTATAGAATTACC-ATTTATCC
1 TCGATTTATAGAATTACCGTTTTACCC
* *
95762755 TCTATTTATAGAATTACCGTTTTACCT
1 TCGATTTATAGAATTACCGTTTTACCC
* * *
95762782 TCAATTTACAGAATTACCGTTTTAGCC
1 TCGATTTATAGAATTACCGTTTTACCC
*
95762809 TCGATTTATAAAATTAC
1 TCGATTTATAGAATTAC
95762826 TAAAATACCA
Statistics
Matches: 200, Mismatches: 28, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
26 64 0.32
27 136 0.68
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.42
Consensus pattern (27 bp):
TCGATTTATAGAATTACCGTTTTACCC
Found at i:95762710 original size:80 final size:79
Alignment explanation
Indices: 95762567--95762825 Score: 324
Period size: 80 Copynumber: 3.2 Consensus size: 79
95762557 ACCAAAGTAA
** * *
95762567 CTTCGATTTATAGAATTACTGTTTTACCTTGATTTATAGAATTACCATTTAACCCTCGATTTATG
1 CTTCGATTTATAGAATTACCATTTTACCTCGATTTATAGAATTACCATTTTACCCTCGATTTATG
*
95762632 GATTACCGTTTTAC
66 AATTACCGTTTTAC
* *
95762646 CTTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTAT
1 CTTCGATTTATAGAATTACCATTTTA-CCTCGATTTATAGAATTACCATTTTACCCTCGATTTAT
*
95762711 AGAATTACCCTTTTAC
65 -GAATTACCGTTTTAC
* * * * *
95762727 CCTCGATTTATAGAATTACCA-TTTATCCTCTATTTATAGAATTACCGTTTTACCTTCAATTTAC
1 CTTCGATTTATAGAATTACCATTTTA-CCTCGATTTATAGAATTACCATTTTACCCTCGATTTA-
*
95762791 AGAATTACCGTTTTAGC
64 TGAATTACCGTTTTA-C
*
95762808 C-TCGATTTATAAAATTAC
1 CTTCGATTTATAGAATTAC
95762826 TAAAATACCA
Statistics
Matches: 157, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
79 23 0.15
80 100 0.64
81 34 0.22
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.42
Consensus pattern (79 bp):
CTTCGATTTATAGAATTACCATTTTACCTCGATTTATAGAATTACCATTTTACCCTCGATTTATG
AATTACCGTTTTAC
Found at i:95762762 original size:107 final size:106
Alignment explanation
Indices: 95762569--95762825 Score: 338
Period size: 107 Copynumber: 2.4 Consensus size: 106
95762559 CAAAGTAACT
* * * *
95762569 TCGATTTATAGAATTACTGTTTTACCTTGATTTATAGAATTACCATTTAACCCTCGATTTATGGA
1 TCGATTTACAGAATTACCGTTTTACCTCGATTTATAGAATTACCATTTAACCCTCGATTTATGAA
*
95762634 TTACCGTTTTACCTTCGATTTACAGAATTACCATTTTACCC
66 TTACCATTTTACCTTCGATTTACAGAATTACCATTTTACCC
* * *
95762675 TCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCCTTTTACCCTCGATTTATAG
1 TCGATTTACAGAATTACCGTTTTA-CCTCGATTTATAGAATTACCATTTAACCCTCGATTTAT-G
* * * *
95762740 AATTACCA-TTTATCC-TCTATTTATAGAATTACCGTTTTACCT
64 AATTACCATTTTA-CCTTCGATTTACAGAATTACCATTTTACCC
* *
95762782 TCAATTTACAGAATTACCGTTTTAGCCTCGATTTATAAAATTAC
1 TCGATTTACAGAATTACCGTTTTA-CCTCGATTTATAGAATTAC
95762826 TAAAATACCA
Statistics
Matches: 132, Mismatches: 16, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
106 21 0.16
107 102 0.77
108 9 0.07
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.42
Consensus pattern (106 bp):
TCGATTTACAGAATTACCGTTTTACCTCGATTTATAGAATTACCATTTAACCCTCGATTTATGAA
TTACCATTTTACCTTCGATTTACAGAATTACCATTTTACCC
Found at i:95762851 original size:107 final size:107
Alignment explanation
Indices: 95762651--95762854 Score: 255
Period size: 107 Copynumber: 1.9 Consensus size: 107
95762641 TTTACCTTCG
* *
95762651 ATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAAT
1 ATTTACAGAATTACCATTTTACCCTCAATTTACAGAATTACCATTTTACCCTCGATTTATAAAAT
**** * * *
95762716 TACCCTTTTACCCTCGATTTATAGAATTACCATTTATCCTCT
66 TACCAAAATACCATCGATTTACAAAATTACCATTTATCCTCT
* * * * *
95762758 ATTTATAGAATTACCGTTTTACCTTCAATTTACAGAATTACCGTTTTAGCCTCGATTTATAAAAT
1 ATTTACAGAATTACCATTTTACCCTCAATTTACAGAATTACCATTTTACCCTCGATTTATAAAAT
* * *
95762823 TACTAAAATACCATTGGTTTACAAAATTACCA
66 TACCAAAATACCATCGATTTACAAAATTACCA
95762855 AAATACCCTC
Statistics
Matches: 80, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
107 80 1.00
ACGTcount: A:0.32, C:0.21, G:0.07, T:0.39
Consensus pattern (107 bp):
ATTTACAGAATTACCATTTTACCCTCAATTTACAGAATTACCATTTTACCCTCGATTTATAAAAT
TACCAAAATACCATCGATTTACAAAATTACCATTTATCCTCT
Found at i:95762879 original size:26 final size:25
Alignment explanation
Indices: 95762846--95763019 Score: 109
Period size: 27 Copynumber: 6.7 Consensus size: 25
95762836 TTGGTTTACA
**
95762846 AAATTACCAAAATACCCTCGATCAGT
1 AAATTACCAAAATACCCTCG-TTTGT
* *
95762872 AAATTACC-AAATCCCCTAGTTTGT
1 AAATTACCAAAATACCCTCGTTTGT
* *
95762896 AAATTACTAAAATACCCCTGGTTTGT
1 AAATTACCAAAATA-CCCTCGTTTGT
* * *
95762922 AAAATTACCAAAATACCCCTGGCTTGCA
1 -AAATTACCAAAATA-CCCTCGTTTG-T
95762950 AAATTACCAAAATACCC-CTGATTTGT
1 AAATTACCAAAATACCCTC-G-TTTGT
* * **
95762976 AAAATTATCGAAATACTATCGATTTGT
1 -AAATTACCAAAATACCCTCG-TTTGT
* * *
95763003 AAAATATCGAAATACCC
1 AAATTACCAAAATACCC
95763020 CTGTAGGTAG
Statistics
Matches: 120, Mismatches: 20, Indels: 16
0.77 0.13 0.10
Matches are distributed among these distances:
24 10 0.08
25 13 0.11
26 36 0.30
27 60 0.50
28 1 0.01
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (25 bp):
AAATTACCAAAATACCCTCGTTTGT
Found at i:95762934 original size:27 final size:27
Alignment explanation
Indices: 95762817--95762991 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
95762807 CCTCGATTTA
* ** *
95762817 TAAAATTACTAAAATACCATTGGTTTA
1 TAAAATTACCAAAATACCCCTGGTTTG
* * **
95762844 CAAAATTACCAAAATA-CCCTCGATCAG
1 TAAAATTACCAAAATACCCCT-GGTTTG
*
95762871 T-AAATTACC-AAAT-CCCCTAGTTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
*
95762895 T-AAATTACTAAAATACCCCTGGTTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
*
95762921 TAAAATTACCAAAATACCCCTGGCTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
* *
95762948 CAAAATTACCAAAATACCCCTGATTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
* *
95762975 TAAAATTATCGAAATAC
1 TAAAATTACCAAAATAC
95762992 TATCGATTTG
Statistics
Matches: 120, Mismatches: 23, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
24 10 0.08
25 12 0.10
26 21 0.17
27 77 0.64
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.29
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCCTGGTTTG
Found at i:95763007 original size:54 final size:53
Alignment explanation
Indices: 95762891--95763074 Score: 144
Period size: 54 Copynumber: 3.5 Consensus size: 53
95762881 AATCCCCTAG
* * * * *
95762891 TTTGT-AAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGG
1 TTTGTAAAATTACCAAAATACCCCT-GTTTGTAAAATTATCGAAATACACCTGA
* * *
95762944 CTTGCAAAATTACCAAAATACCCCTGATTTGTAAAATTATCGAAATACTATC-GA
1 TTTGTAAAATTACCAAAATACCCCTG-TTTGTAAAATTATCGAAATAC-ACCTGA
* * ** *
95762998 TTTGTAAAA-TATCGAAATACCCCTGTAGGTAGAATTATCGAAATAC-CCTG-
1 TTTGTAAAATTACCAAAATACCCCTGTTTGTAAAATTATCGAAATACACCTGA
** * * *
95763048 TAGGTATAATTACCGAAATATCCCTGT
1 TTTGTAAAATTACCAAAATACCCCTGT
95763075 AGGGTATAAT
Statistics
Matches: 105, Mismatches: 21, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
50 7 0.07
51 16 0.15
52 18 0.17
53 18 0.17
54 45 0.43
55 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.12, T:0.31
Consensus pattern (53 bp):
TTTGTAAAATTACCAAAATACCCCTGTTTGTAAAATTATCGAAATACACCTGA
Found at i:95763085 original size:27 final size:26
Alignment explanation
Indices: 95763010--95763274 Score: 259
Period size: 27 Copynumber: 10.0 Consensus size: 26
95763000 TGTAAAATAT
*
95763010 CGAAATACCCCTGTA-GGTAGAATTAT
1 CGAAATA-CCCTGTAGGGTAGAATTAC
*
95763036 CGAAATACCCTGTA-GGTATAATTAC
1 CGAAATACCCTGTAGGGTAGAATTAC
*
95763061 CGAAATATCCCTGTAGGGTATAATTAC
1 CGAAATA-CCCTGTAGGGTAGAATTAC
95763088 CGAAATATCCCTGTA-GGTAGAATTAC
1 CGAAATA-CCCTGTAGGGTAGAATTAC
* * * *
95763114 TGAAATAACCCTATAGCGTGGAATTAC
1 CGAAAT-ACCCTGTAGGGTAGAATTAC
* * *
95763141 CAAAATACCCCTATAGGGTAAAATTAC
1 CGAAATA-CCCTGTAGGGTAGAATTAC
*
95763168 TGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATA-CCCTGTAGGGTAGAATTAC
* * *
95763195 CAAAATACCCTTGTCGGGTAGAAATAC
1 CGAAATACCC-TGTAGGGTAGAATTAC
* *
95763222 TG-AATACCCTGTAGGGTATAATTAC
1 CGAAATACCCTGTAGGGTAGAATTAC
* * *
95763247 CGATATACCCTTGTGGGGTAAAATTAC
1 CGAAATACCC-TGTAGGGTAGAATTAC
95763274 C
1 C
95763275 ATTTTGCCCC
Statistics
Matches: 202, Mismatches: 29, Indels: 15
0.82 0.12 0.06
Matches are distributed among these distances:
25 37 0.18
26 52 0.26
27 113 0.56
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (26 bp):
CGAAATACCCTGTAGGGTAGAATTAC
Found at i:95763112 original size:53 final size:52
Alignment explanation
Indices: 95763011--95763257 Score: 275
Period size: 53 Copynumber: 4.7 Consensus size: 52
95763001 GTAAAATATC
* * *
95763011 GAAATACCCCTGTA-GGTAGAATTATCGAAATACCCTGTAGGTATAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTGTAGGTAGAATTACT
* *
95763062 GAAATATCCCTGTAGGGTATAATTACCGAAATATCCCTGTAGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATA-CCCTGTAGGTAGAATTACT
* * * * * * *
95763115 GAAATAACCCTATAGCGTGGAATTACCAAAATACCCCTATAGGGTAAAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATA-CCCTGTA-GGTAGAATTACT
* * *
95763169 GAAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTGTCGGGTAGAAATACT
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCC-TGT-AGGTAGAATTACT
* *
95763223 G-AATA-CCCTGTAGGGTATAATTACCGATATACCCT
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCT
95763258 TGTGGGGTAA
Statistics
Matches: 166, Mismatches: 25, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
51 14 0.08
52 42 0.25
53 57 0.34
54 53 0.32
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.27
Consensus pattern (52 bp):
GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTGTAGGTAGAATTACT
Found at i:95763504 original size:25 final size:25
Alignment explanation
Indices: 95763476--95763570 Score: 145
Period size: 25 Copynumber: 3.8 Consensus size: 25
95763466 GAGGAAGTGC
**
95763476 AAAAGGGCAATGCCCCAGTTTAACG
1 AAAAGGGCTTTGCCCCAGTTTAACG
*
95763501 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTAACG
* *
95763526 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTAACG
95763551 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
95763571 ATTAAAAGAG
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 65 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.23
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTAACG
Found at i:95766261 original size:27 final size:27
Alignment explanation
Indices: 95765996--95766260 Score: 368
Period size: 27 Copynumber: 9.8 Consensus size: 27
95765986 ATTACCAAAG
*
95765996 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
95766023 TACCCTTGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
95766050 TACCCTTGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * * *
95766077 TACCCTCAATTTACAGAATTATCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
95766104 TACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
95766131 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
95766158 TACTCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
95766185 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * * *
95766212 TACCTTCAATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
95766239 TACCCTCAATTTATAAAATTAC
1 TACCCTCGATTTATAGAATTAC
95766261 TAAAATACCA
Statistics
Matches: 212, Mismatches: 26, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 212 1.00
ACGTcount: A:0.29, C:0.20, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCGTTT
Found at i:95766269 original size:27 final size:27
Alignment explanation
Indices: 95766239--95766417 Score: 116
Period size: 27 Copynumber: 6.7 Consensus size: 27
95766229 ATTACTGTTT
* *
95766239 TACCCTCAATTTATAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * * *
95766266 TACCATTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
*
95766293 TACCCTCGA-TCAGT-AAATTACCAAAA
1 TACCCTCGATTTA-TAAAATTACCAAAA
* * *
95766319 TAACCCT-GGTTTGTAAAATTACTAAAA
1 T-ACCCTCGATTTATAAAATTACCAAAA
* * *
95766346 TACCCTTG-GTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * * *
95766372 TACCC-CTGATTTGTGAAATTATCGAAA
1 TACCCTC-GATTTATAAAATTACCAAAA
** *
95766399 TACTATCGATTTGTAAAAT
1 TACCCTCGATTTATAAAAT
95766418 ATCGAAATAC
Statistics
Matches: 119, Mismatches: 25, Indels: 16
0.74 0.16 0.10
Matches are distributed among these distances:
26 44 0.37
27 74 0.62
28 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCAAAA
Found at i:95766314 original size:26 final size:25
Alignment explanation
Indices: 95766252--95766376 Score: 119
Period size: 26 Copynumber: 4.8 Consensus size: 25
95766242 CCTCAATTTA
* *
95766252 TAAAATTACTAAAATACCATTGGTT-
1 TAAAATTACCAAAATACC-CTGGTTG
* *
95766277 TACAAAATTACCAAAATACCCTCGATCAG
1 T--AAAATTACCAAAATACCCT-GGT-TG
95766306 T-AAATTACCAAAATAACCCTGGTTTG
1 TAAAATTACCAAAAT-ACCCTGG-TTG
*
95766332 TAAAATTACTAAAATACCCTTGGTTG
1 TAAAATTACCAAAATACCC-TGGTTG
95766358 TAAAATTACCAAAATACCC
1 TAAAATTACCAAAATACCC
95766377 CTGATTTGTG
Statistics
Matches: 83, Mismatches: 8, Indels: 17
0.77 0.07 0.16
Matches are distributed among these distances:
25 1 0.01
26 42 0.51
27 39 0.47
29 1 0.01
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.29
Consensus pattern (25 bp):
TAAAATTACCAAAATACCCTGGTTG
Found at i:95766385 original size:53 final size:54
Alignment explanation
Indices: 95766252--95766432 Score: 161
Period size: 53 Copynumber: 3.4 Consensus size: 54
95766242 CCTCAATTTA
* ** **
95766252 TAAAATTACTAAAATACCATTGGTTTACAAAATTACCAAAATACCCTCGATCAG
1 TAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTCGATCAG
* * * * *
95766306 T-AAATTACCAAAATAACCCTGGTTTGTAAAATTACTAAAATACCCTTGGT-TG
1 TAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTCGATCAG
* * * * ** **
95766358 TAAAATTACCAAAATACCCCTGATTTGTGAAATTATCGAAATACTATCGATTTG
1 TAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTCGATCAG
* *
95766412 TAAAA-TATCGAAATACCCCTG
1 TAAAATTACCAAAATACCCCTG
95766433 TAGGGTAGAA
Statistics
Matches: 103, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
52 2 0.02
53 93 0.90
54 8 0.08
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.30
Consensus pattern (54 bp):
TAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTCGATCAG
Found at i:95766491 original size:54 final size:54
Alignment explanation
Indices: 95766424--95766608 Score: 262
Period size: 54 Copynumber: 3.4 Consensus size: 54
95766414 AAATATCGAA
*
95766424 ATACCCCTGTAGGGTAGAATTACTGAAATAACCCTATAGGGTAGAATTACCGAG
1 ATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACCGAG
* * * *
95766478 ATACCCCTATAGGGTAAAATTACTGAAATACCCCTATAGGGTAGAATTACCAAA
1 ATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACCGAG
* * * *
95766532 ATACCCTTGTAGGGTAGAAATACTAAAATACCCCTGTAGGGTAGAATTACCGAG
1 ATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACCGAG
* * *
95766586 ATACCCTTGTGGGGTAAAATTAC
1 ATACCCCTGTAGGGTAGAATTAC
95766609 CATTTTGCCC
Statistics
Matches: 115, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 115 1.00
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (54 bp):
ATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACCGAG
Found at i:95766600 original size:27 final size:27
Alignment explanation
Indices: 95766420--95766609 Score: 227
Period size: 27 Copynumber: 7.0 Consensus size: 27
95766410 TGTAAAATAT
95766420 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
95766447 TGAAATAACCCTATAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
95766474 CGAGATACCCCTATAGGGTAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
95766501 TGAAATACCCCTATAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
95766528 CAAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
**
95766555 TAAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * * *
95766582 CGAGATACCCTTGTGGGGTAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
95766609 C
1 C
95766610 ATTTTGCCCC
Statistics
Matches: 139, Mismatches: 24, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 139 1.00
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.24
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:95766886 original size:24 final size:24
Alignment explanation
Indices: 95766837--95766894 Score: 91
Period size: 25 Copynumber: 2.4 Consensus size: 24
95766827 TAGTTTAACG
95766837 AAAAAGGCTTTGCCCCAGTTTATT
1 AAAAAGGCTTTGCCCCAGTTTATT
95766861 AAAAAGGGCTTTGCCCCAGTTT-TT
1 AAAAA-GGCTTTGCCCCAGTTTATT
95766885 AAAAGAGGCT
1 AAAA-AGGCT
95766895 AGGCTTCTAG
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
24 15 0.47
25 17 0.53
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (24 bp):
AAAAAGGCTTTGCCCCAGTTTATT
Found at i:95767136 original size:30 final size:30
Alignment explanation
Indices: 95767102--95767183 Score: 139
Period size: 30 Copynumber: 2.7 Consensus size: 30
95767092 CGCTTACAGT
*
95767102 AAAGGCATCGGCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCAGTGATATGATTTATGA
95767132 AAAGGCTTCGGCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCAGTGATATGATTTATGA
95767162 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGG-CCAGTGATATG
95767184 TCGAGACTAA
Statistics
Matches: 50, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
30 45 0.90
31 5 0.10
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (30 bp):
AAAGGCTTCGGCCAGTGATATGATTTATGA
Found at i:95770081 original size:28 final size:28
Alignment explanation
Indices: 95770013--95770110 Score: 119
Period size: 26 Copynumber: 3.5 Consensus size: 28
95770003 CATGAGATTG
* * * *
95770013 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
95770042 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
95770070 GCACTAGGTGTGCGAG--TGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
95770096 GCACTGAGTGTGCGA
1 GCACTAAGTGTGCGA
95770111 CTTAATATAT
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
26 23 0.37
28 21 0.34
29 18 0.29
ACGTcount: A:0.27, C:0.13, G:0.30, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:95770119 original size:26 final size:25
Alignment explanation
Indices: 95770041--95770121 Score: 81
Period size: 26 Copynumber: 3.0 Consensus size: 25
95770031 TAAATTGTAC
*
95770041 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACT-AGTGTGCGA-CTT-ATTATAT
* *
95770069 AGCACTAGGTGTGCGAGTGATTATAT
1 AGCACTA-GTGTGCGACTTATTATAT
*
95770095 AGCACTGAGTGTGCGACTTAATATAT
1 AGCACT-AGTGTGCGACTTATTATAT
95770121 A
1 A
95770122 TTTTGAATCA
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
26 29 0.63
27 3 0.07
28 14 0.30
ACGTcount: A:0.30, C:0.12, G:0.26, T:0.32
Consensus pattern (25 bp):
AGCACTAGTGTGCGACTTATTATAT
Found at i:95777975 original size:28 final size:28
Alignment explanation
Indices: 95777935--95778004 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
95777925 TAAATTGTAC
95777935 AGCACTAAGTGTGCGAGTTTGATT-ATAT
1 AGCACTAAGTGTGCGAG-TTGATTAATAT
95777963 AGCACT-AGTTGTGCGAGTTGATTAATAT
1 AGCACTAAG-TGTGCGAGTTGATTAATAT
*
95777991 AGCACTGAGTGTGC
1 AGCACTAAGTGTGC
95778005 ACTTAATATA
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
27 8 0.21
28 29 0.74
29 2 0.05
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTGATTAATAT
Found at i:96040036 original size:28 final size:28
Alignment explanation
Indices: 96040005--96040062 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
96039995 ACTTATGGAT
96040005 TATTTTGAGATATTATTGATAGGGATTA
1 TATTTTGAGATATTATTGATAGGGATTA
96040033 TATTTTGAGATATTATTGATAGGGATTA
1 TATTTTGAGATATTATTGATAGGGATTA
96040061 TA
1 TA
96040063 AATTGAGAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.47
Consensus pattern (28 bp):
TATTTTGAGATATTATTGATAGGGATTA
Found at i:96040068 original size:28 final size:28
Alignment explanation
Indices: 96040009--96040070 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
96039999 ATGGATTATT
**
96040009 TTGAGATATTATTGATAGGGATTATATT
1 TTGAGATATTATTGATAGGGATTATAAA
96040037 TTGAGATATTATTGATAGGGATTATAAA
1 TTGAGATATTATTGATAGGGATTATAAA
96040065 TTGAGA
1 TTGAGA
96040071 AGAATTTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (28 bp):
TTGAGATATTATTGATAGGGATTATAAA
Found at i:96045667 original size:25 final size:25
Alignment explanation
Indices: 96045633--96045682 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
96045623 GGCAGGGGAG
96045633 CCTGAAATCACTCTGACTCTGTCTC
1 CCTGAAATCACTCTGACTCTGTCTC
96045658 CCTGAAATCACTCTGACTCTGTCTC
1 CCTGAAATCACTCTGACTCTGTCTC
96045683 ACAAAAGTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.20, C:0.36, G:0.12, T:0.32
Consensus pattern (25 bp):
CCTGAAATCACTCTGACTCTGTCTC
Found at i:96047695 original size:27 final size:28
Alignment explanation
Indices: 96047665--96047807 Score: 98
Period size: 27 Copynumber: 5.3 Consensus size: 28
96047655 CAGTCCTGGT
* *
96047665 GGACCTTCT-ATATAGGATAGTCCTAAC
1 GGACCTTCTCACATAAGATAGTCCTAAC
96047692 GGACCTT-TCACATAAGATAGTCCTAAC
1 GGACCTTCTCACATAAGATAGTCCTAAC
* * * * *
96047719 GAACCTTC-CACATAATATAGTCTTGAT
1 GGACCTTCTCACATAAGATAGTCCTAAC
* * ** * *
96047746 GGACCCTC-CACATATGATAGTATTGAT
1 GGACCTTCTCACATAAGATAGTCCTAAC
* * *
96047773 GGACCTTC-CATACATGATAGTCCTAAC
1 GGACCTTCTCACATAAGATAGTCCTAAC
*
96047800 AGACCTTC
1 GGACCTTC
96047808 CACTTATATG
Statistics
Matches: 94, Mismatches: 20, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
26 1 0.01
27 93 0.99
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (28 bp):
GGACCTTCTCACATAAGATAGTCCTAAC
Found at i:96050051 original size:13 final size:13
Alignment explanation
Indices: 96050029--96050061 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
96050019 AAAGGTTTTT
96050029 TTAT-TAAACTAA
1 TTATCTAAACTAA
96050041 TTATCTAAACTAA
1 TTATCTAAACTAA
*
96050054 TTAACTAA
1 TTATCTAA
96050062 TTTAGTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:96052994 original size:6 final size:6
Alignment explanation
Indices: 96052961--96053019 Score: 57
Period size: 6 Copynumber: 9.8 Consensus size: 6
96052951 AATAAAATTT
* * * * *
96052961 AAATGA AAATAA AAATCA AAAGAA AAATAA AAATAA GAATAA GAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
96053009 ATAA-AA AAATA
1 A-AATAA AAATA
96053020 GGAGGATTCA
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
5 2 0.05
6 40 0.91
7 2 0.05
ACGTcount: A:0.76, C:0.02, G:0.07, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:96053009 original size:18 final size:18
Alignment explanation
Indices: 96052939--96052994 Score: 60
Period size: 18 Copynumber: 3.1 Consensus size: 18
96052929 GATATGTCTT
*
96052939 TCAAAAGAAAATAATAAAAT
1 TCAAAAG-AAA-AATAAAAA
* *
96052959 TTAAATG-AAAATAAAAA
1 TCAAAAGAAAAATAAAAA
96052976 TCAAAAGAAAAATAAAAA
1 TCAAAAGAAAAATAAAAA
96052994 T
1 T
96052995 AAGAATAAGA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
17 12 0.40
18 13 0.43
20 5 0.17
ACGTcount: A:0.71, C:0.04, G:0.05, T:0.20
Consensus pattern (18 bp):
TCAAAAGAAAAATAAAAA
Found at i:96055853 original size:13 final size:13
Alignment explanation
Indices: 96055831--96055863 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
96055821 AAGGGTTTGT
96055831 TTAT-TAAACTAA
1 TTATCTAAACTAA
96055843 TTATCTAAACTAA
1 TTATCTAAACTAA
*
96055856 TTAACTAA
1 TTATCTAA
96055864 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:96060828 original size:10 final size:10
Alignment explanation
Indices: 96060811--96060847 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
96060801 AACTTAATAA
96060811 AAGA-AAAAT
1 AAGATAAAAT
*
96060820 AAAATAAAAT
1 AAGATAAAAT
96060830 AAGATAAAAT
1 AAGATAAAAT
96060840 AAGATAAA
1 AAGATAAA
96060848 TAATTGAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
9 3 0.12
10 22 0.88
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (10 bp):
AAGATAAAAT
Found at i:96060836 original size:15 final size:14
Alignment explanation
Indices: 96060816--96060850 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
96060806 AATAAAAGAA
96060816 AAATAAAATAAAAT
1 AAATAAAATAAAAT
*
96060830 AAGATAAAATAAGAT
1 AA-ATAAAATAAAAT
96060845 AAATAA
1 AAATAA
96060851 TTGAATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.20
Consensus pattern (14 bp):
AAATAAAATAAAAT
Found at i:96073950 original size:28 final size:28
Alignment explanation
Indices: 96073890--96073957 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
96073880 ACTGATTTCA
96073890 CACACATAGTGCTCGATTAAAGAACTCG
1 CACACATAGTGCTCGATTAAAGAACTCG
* * * * *
96073918 TACACATAGTGCTCGGTTGAAGAGCTTG
1 CACACATAGTGCTCGATTAAAGAACTCG
*
96073946 CACACACAGTGC
1 CACACATAGTGC
96073958 CTCATAATTC
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.22
Consensus pattern (28 bp):
CACACATAGTGCTCGATTAAAGAACTCG
Found at i:96074034 original size:40 final size:40
Alignment explanation
Indices: 96073969--96074247 Score: 436
Period size: 40 Copynumber: 7.0 Consensus size: 40
96073959 TCATAATTCC
* *
96073969 AGCACGAATGC-CTTCGAGG-TTTAGCCCAGATATATCACT
1 AGCACGAATGCTCTTCG-GGACTTAGCCCGGATATATCACT
* *
96074008 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
* * * *
96074048 AGCACGAATGCTCTTTGGGACTTATCCCGGATATAACACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
96074088 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
* * *
96074128 AGCACGAATGATCTTCGGGACTTAGCCCGGATATAACACC
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
96074168 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
96074208 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
96074248 CTCAATTCTC
Statistics
Matches: 222, Mismatches: 16, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
39 13 0.06
40 209 0.94
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
Found at i:96080033 original size:25 final size:25
Alignment explanation
Indices: 96080005--96080055 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
96079995 GTCTTCACAA
*
96080005 GTAAGTGATTTTAATGGCTTTTCTT
1 GTAAATGATTTTAATGGCTTTTCTT
96080030 GTAAATGATTTTAATGGCTTTTCTT
1 GTAAATGATTTTAATGGCTTTTCTT
96080055 G
1 G
96080056 AATATTTTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.22, C:0.08, G:0.20, T:0.51
Consensus pattern (25 bp):
GTAAATGATTTTAATGGCTTTTCTT
Found at i:96080932 original size:46 final size:44
Alignment explanation
Indices: 96080787--96080994 Score: 172
Period size: 46 Copynumber: 4.5 Consensus size: 44
96080777 TGTGTGAGCT
* ** *
96080787 AGTGTAAGACATGTCTAGGACATGCATCAGCCATATTATGA-GAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCC-TACGA-GATGTGCC
* * *
96080833 AATGTAAGACCATGTCTGGGACATGGCATCGGCATGGA-GACGA-GTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC-GCCT--ACGA-GATGTGCC
*
96080881 AGTGTAAGACAAGTCTGGGACATGCATCGACCT-CGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCG-CCTACGAGATGT--GCC
* *
96080927 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGCCTACGAGATGTGCC
*
96080971 AGTGTAAGACCATGTCTAGGACAT
1 AGTGTAAGA-CATGTCTGGGACAT
96080995 CACATTAGCA
Statistics
Matches: 135, Mismatches: 16, Indels: 23
0.78 0.09 0.13
Matches are distributed among these distances:
43 2 0.01
44 15 0.11
45 16 0.12
46 53 0.39
47 27 0.20
48 21 0.16
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGCCTACGAGATGTGCC
Found at i:96082869 original size:27 final size:27
Alignment explanation
Indices: 96082839--96083007 Score: 130
Period size: 27 Copynumber: 6.3 Consensus size: 27
96082829 TTTAGTTTAC
*
96082839 TAAAATTACTGAAATACCATCGATTTG
1 TAAAATTACTGAAATACCCTCGATTTG
* * *
96082866 TAAAATTATTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCCTCGATTTG
* * *
96082893 TAAAATTAC-CAAAGTACCC-CTGGTTTA
1 TAAAATTACTGAAA-TACCCTC-GATTTG
* ***
96082920 TAAAATTACCGAAATAGTGTCGA-TTG
1 TAAAATTACTGAAATACCCTCGATTTG
* * *
96082946 TAAAATTACTAAAATGCCCTCAATTTG
1 TAAAATTACTGAAATACCCTCGATTTG
* *
96082973 TAAAATTAC-CAAAGTACCCTCGATTTA
1 TAAAATTACTGAAA-TACCCTCGATTTG
*
96083000 CAAAATTA
1 TAAAATTA
96083008 TCGTTTTACC
Statistics
Matches: 109, Mismatches: 27, Indels: 12
0.74 0.18 0.08
Matches are distributed among these distances:
26 25 0.23
27 80 0.73
28 4 0.04
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.32
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCTCGATTTG
Found at i:96082977 original size:53 final size:54
Alignment explanation
Indices: 96082839--96082995 Score: 151
Period size: 53 Copynumber: 2.9 Consensus size: 54
96082829 TTTAGTTTAC
* * **
96082839 TAAAATTACTGAAATACCATCGATTTGTAAAATTATTGAAATACCTTCGACTTG
1 TAAAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAATACCTTCGACTTG
* * * * *
96082893 TAAAATTACCAAAGTACCC-CTGGTTTATAAAATTACCGAAATA-GTGTCGA-TTG
1 TAAAATTACTAAAATACCCTC-GATTTGTAAAATTACCGAAATACCT-TCGACTTG
* * *
96082946 TAAAATTACTAAAATGCCCTCAATTTGTAAAATTACC-AAAGTACCCTCGA
1 TAAAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAA-TACCTTCGA
96082996 TTTACAAAAT
Statistics
Matches: 81, Mismatches: 17, Indels: 11
0.74 0.16 0.10
Matches are distributed among these distances:
52 3 0.04
53 40 0.49
54 38 0.47
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.31
Consensus pattern (54 bp):
TAAAATTACTAAAATACCCTCGATTTGTAAAATTACCGAAATACCTTCGACTTG
Found at i:96082979 original size:80 final size:82
Alignment explanation
Indices: 96082833--96083007 Score: 214
Period size: 80 Copynumber: 2.2 Consensus size: 82
96082823 GAATACTTTA
* * * * *
96082833 GTTTACTAAAATTACTGAAATACCATCGATTTGTAAAATTATTGAAATACCTTCGACTTGTAAAA
1 GTTTACTAAAATTACCGAAATACCATCGATTTGTAAAATTACTAAAATACCCTCAACTTGTAAAA
96082898 TTACCAAAGTACCCCTG
66 TTACCAAAGTACCCCTG
*** * *
96082915 GTTTA-TAAAATTACCGAAATAGTGTCGA-TTGTAAAATTACTAAAATGCCCTCAATTTGTAAAA
1 GTTTACTAAAATTACCGAAATACCATCGATTTGTAAAATTACTAAAATACCCTCAACTTGTAAAA
96082978 TTACCAAAGTA-CCCTCG
66 TTACCAAAGTACCCCT-G
*
96082995 ATTTAC-AAAATTA
1 GTTTACTAAAATTA
96083008 TCGTTTTACC
Statistics
Matches: 80, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
79 4 0.05
80 52 0.65
81 19 0.24
82 5 0.06
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (82 bp):
GTTTACTAAAATTACCGAAATACCATCGATTTGTAAAATTACTAAAATACCCTCAACTTGTAAAA
TTACCAAAGTACCCCTG
Found at i:96083017 original size:27 final size:27
Alignment explanation
Indices: 96082987--96083267 Score: 395
Period size: 27 Copynumber: 10.4 Consensus size: 27
96082977 ATTACCAAAG
* *
96082987 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
96083014 TACCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
96083041 TTCCCTTGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
96083068 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
96083095 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
96083122 TACCCTCGATTCCTA-A-AATTACTGTTT
1 TACCCTCGATT--TACAGAATTACCGTTT
* *
96083149 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
96083176 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
96083203 TACCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
96083230 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
96083257 TACCCTCGATT
1 TACCCTCGATT
96083268 AGGAAAATTA
Statistics
Matches: 231, Mismatches: 19, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
25 2 0.01
26 1 0.00
27 225 0.97
28 1 0.00
29 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:96083277 original size:81 final size:81
Alignment explanation
Indices: 96082987--96083356 Score: 388
Period size: 81 Copynumber: 4.5 Consensus size: 81
96082977 ATTACCAAAG
* * * * *
96082987 TACCCTCGATTTACAAAATTATCGTTTTACCCTCGATTTACAGAATTATCGTTTTTCCCTTGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
* *
96083052 TACAGAATTACCATTT
66 TACAGAATTATCGTTT
* * * *
96083068 TACCCTCGATTTATAGAATTACTGTTTTACCCTCAATTTATAGAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
96083133 CCTA-A-AATTA-CTGTTT
66 --TACAGAATTATC-GTTT
* *
96083149 TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
96083214 TACAGAATTATCGTTT
66 TACAGAATTATCGTTT
* * * *****
96083230 TACCCTCGATTTACAGAATTACCATTTTACCCTCGA-TTAGGAAAATTACAAAAATACCTCTGGT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTA-CAGAATTACCGTTTTACC-C----
* *
96083294 TTGTAAAATTACAGAATTATCGTTT
60 TCG---ATTTACAGAATTATCGTTT
*
96083319 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
96083357 AGGAAAATTA
Statistics
Matches: 249, Mismatches: 24, Indels: 23
0.84 0.08 0.08
Matches are distributed among these distances:
79 2 0.01
80 5 0.02
81 180 0.72
82 3 0.01
83 2 0.01
86 2 0.01
89 54 0.22
90 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.10, T:0.39
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
TACAGAATTATCGTTT
Found at i:96083332 original size:27 final size:27
Alignment explanation
Indices: 96083302--96083356 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
96083292 GTTTGTAAAA
* *
96083302 TTACAGAATTATCGTTTTACCCTCGAT
1 TTACAGAATTACCATTTTACCCTCGAT
96083329 TTACAGAATTACCATTTTACCCTCGAT
1 TTACAGAATTACCATTTTACCCTCGAT
96083356 T
1 T
96083357 AGGAAAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.27, C:0.24, G:0.09, T:0.40
Consensus pattern (27 bp):
TTACAGAATTACCATTTTACCCTCGAT
Found at i:96083337 original size:89 final size:89
Alignment explanation
Indices: 96083213--96083394 Score: 364
Period size: 89 Copynumber: 2.0 Consensus size: 89
96083203 TACCCTCGAT
96083213 TTACAGAATTATCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTAGGAAAATTA
1 TTACAGAATTATCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTAGGAAAATTA
96083278 CAAAAATACCTCTGGTTTGTAAAA
66 CAAAAATACCTCTGGTTTGTAAAA
96083302 TTACAGAATTATCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTAGGAAAATTA
1 TTACAGAATTATCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTAGGAAAATTA
96083367 CAAAAATACCTCTGGTTTGTAAAA
66 CAAAAATACCTCTGGTTTGTAAAA
96083391 TTAC
1 TTAC
96083395 CAAAATACCC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
89 93 1.00
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35
Consensus pattern (89 bp):
TTACAGAATTATCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTAGGAAAATTA
CAAAAATACCTCTGGTTTGTAAAA
Found at i:96083376 original size:27 final size:28
Alignment explanation
Indices: 96083346--96083432 Score: 83
Period size: 27 Copynumber: 3.2 Consensus size: 28
96083336 ATTACCATTT
*
96083346 TACCCTC-GATTAGGAAAATTACAAAAA
1 TACCCTCTGATTAGCAAAATTACAAAAA
* * * *
96083373 TA-CCTCTGGTTTGTAAAATTACCAAAA
1 TACCCTCTGATTAGCAAAATTACAAAAA
*
96083400 TACCC-CTGATTTA-CAAAATTACAGAAA
1 TACCCTCTGA-TTAGCAAAATTACAAAAA
96083427 TACCCT
1 TACCCT
96083433 TGACTTTCTA
Statistics
Matches: 47, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
26 4 0.09
27 39 0.83
28 4 0.09
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.28
Consensus pattern (28 bp):
TACCCTCTGATTAGCAAAATTACAAAAA
Found at i:96083391 original size:116 final size:116
Alignment explanation
Indices: 96083186--96083430 Score: 296
Period size: 116 Copynumber: 2.1 Consensus size: 116
96083176 TACCCTCGAT
* * *
96083186 TTACAGAATTACCGTTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTTACAGAATTA
1 TTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTA
* *** * * **
96083251 CCATTTTACCCTCGATTAGGAAAATTACAAAAATACCTCTGGTTTGTAAAA
66 CAAAAATACCCTCGATTAGGAAAATTACAAAAATACCCCTGATTTACAAAA
* *
96083302 TTACAGAATTATCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGA-TTAGGAAAATT
1 TTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTA-CAAAATT
* * * *
96083366 ACAAAAATA-CCTCTGGTTTGTAAAATTACCAAAATACCCCTGATTTACAAAA
65 ACAAAAATACCCTC-GATTAGGAAAATTACAAAAATACCCCTGATTTACAAAA
*
96083418 TTACAGAAATACC
1 TTACAGAATTACC
96083431 CTTGACTTTC
Statistics
Matches: 108, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
115 7 0.06
116 101 0.94
ACGTcount: A:0.36, C:0.21, G:0.10, T:0.33
Consensus pattern (116 bp):
TTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTA
CAAAAATACCCTCGATTAGGAAAATTACAAAAATACCCCTGATTTACAAAA
Found at i:96083422 original size:89 final size:88
Alignment explanation
Indices: 96083240--96083430 Score: 253
Period size: 89 Copynumber: 2.1 Consensus size: 88
96083230 TACCCTCGAT
96083240 TTACAGAATTACCATTTTACCCTCGATTAGGAAAATTACAAAAATACCTCTGGTTTGTAAAATTA
1 TTACAGAATTACCATTTTACCCTCGATTAGGAAAATTACAAAAATACCTCTGGTTTGTAAAATTA
* * * ** *
96083305 CAGAATTATCGTTTTACCCTCGAT
66 CAGAAATACCGATTTA-CCTAAAA
96083329 TTACAGAATTACCATTTTACCCTCGATTAGGAAAATTACAAAAATACCTCTGGTTTGTAAAATTA
1 TTACAGAATTACCATTTTACCCTCGATTAGGAAAATTACAAAAATACCTCTGGTTTGTAAAATTA
96083394 CCA-AAATACCCCTGATTTA-C-AAAA
66 -CAGAAATA--CC-GATTTACCTAAAA
*
96083418 TTACAGAAATACC
1 TTACAGAATTACC
96083431 CTTGACTTTC
Statistics
Matches: 91, Mismatches: 7, Indels: 8
0.86 0.07 0.08
Matches are distributed among these distances:
89 82 0.90
90 3 0.03
91 1 0.01
92 5 0.05
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (88 bp):
TTACAGAATTACCATTTTACCCTCGATTAGGAAAATTACAAAAATACCTCTGGTTTGTAAAATTA
CAGAAATACCGATTTACCTAAAA
Found at i:96083482 original size:27 final size:27
Alignment explanation
Indices: 96083360--96083494 Score: 123
Period size: 27 Copynumber: 4.9 Consensus size: 27
96083350 CTCGATTAGG
* **
96083360 AAAATTACAAAAATA-CCTCTGGTTTGT
1 AAAATTACAGAAATACCCT-TGGTTTAC
* *
96083387 AAAATTACCA-AAATACCCCTGATTTAC
1 AAAATTA-CAGAAATACCCTTGGTTTAC
*
96083414 AAAATTACAGAAATACCCTTGACTTT-C
1 AAAATTACAGAAATACCCTTG-GTTTAC
* *
96083441 TAAAAATTATAGAAATACCATTGGTTTAC
1 --AAAATTACAGAAATACCCTTGGTTTAC
*
96083470 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACAGAAATACCCTTGGTTT
96083495 GTAGATTTAC
Statistics
Matches: 89, Mismatches: 12, Indels: 14
0.77 0.10 0.12
Matches are distributed among these distances:
26 2 0.02
27 57 0.64
28 10 0.11
29 20 0.22
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (27 bp):
AAAATTACAGAAATACCCTTGGTTTAC
Found at i:96083578 original size:27 final size:27
Alignment explanation
Indices: 96083548--96083639 Score: 130
Period size: 27 Copynumber: 3.4 Consensus size: 27
96083538 ACCCCTATTA
*
96083548 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
96083575 GGTAAAGTGATCATAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
96083602 GGTAAAGTGACCGTAAAGCCCCTGTAT
1 GGTAAAATGACCGTAAAGCCCCTGTAG
96083629 GGTAAAATGAC
1 GGTAAAATGAC
96083640 AAATATGCCC
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.35, C:0.20, G:0.26, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:96084467 original size:26 final size:26
Alignment explanation
Indices: 96084438--96084680 Score: 330
Period size: 26 Copynumber: 9.3 Consensus size: 26
96084428 GAGGAAGTGC
*
96084438 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
96084464 AAAAAGGGCTTATGCCCCAGTTTATTG
1 -AAAAGGGCTTATGCCCCAGTTTATTG
*
96084491 AAAATGGCTTATGCCCCAGTTTATTGG
1 AAAAGGGCTTATGCCCCAGTTTATT-G
* **
96084518 AAAGGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
96084544 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
96084570 GAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
96084596 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
96084622 AAAAGGGCTTACGCCCCAGTTTA-CC
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
96084647 AAAAGGGCTTTTGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
96084671 AAAAGAGGCT
1 AAAAG-GGCT
96084681 AGGCCTCCAG
Statistics
Matches: 192, Mismatches: 21, Indels: 8
0.87 0.10 0.04
Matches are distributed among these distances:
24 8 0.04
25 21 0.11
26 116 0.60
27 47 0.24
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:96084526 original size:53 final size:53
Alignment explanation
Indices: 96084438--96084667 Score: 367
Period size: 53 Copynumber: 4.4 Consensus size: 53
96084428 GAGGAAGTGC
* * **
96084438 AAAAGGGCTTATGCCCTAGTTTATTGAAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTGGAAAAGGGCTTATGCCCCAGTTTACCG
* *
96084491 AAAATGGCTTATGCCCCAGTTTATTGGAAAGGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGGAAAAGGGCTTATGCCCCAGTTTACCG
96084544 AAAAGGGCTTATGCCCCAGTTTATTGG-AAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGGAAAAGGGCTTATGCCCCAGTTTACCG
*
96084596 AAAAGGGCTTATGCCCCAGTTTATT-GAAAAGGGCTTACGCCCCAGTTTACC-
1 AAAAGGGCTTATGCCCCAGTTTATTGGAAAAGGGCTTATGCCCCAGTTTACCG
*
96084647 AAAAGGGCTTTTGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
96084668 ATTAAAAGAG
Statistics
Matches: 166, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
51 21 0.13
52 72 0.43
53 73 0.44
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.28
Consensus pattern (53 bp):
AAAAGGGCTTATGCCCCAGTTTATTGGAAAAGGGCTTATGCCCCAGTTTACCG
Found at i:96084600 original size:52 final size:52
Alignment explanation
Indices: 96084438--96084680 Score: 366
Period size: 52 Copynumber: 4.7 Consensus size: 52
96084428 GAGGAAGTGC
* **
96084438 AAAAGGGCTTATGCCCTAGTTTATTGAAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG-AAAAGGGCTTATGCCCCAGTTTACCG
* *
96084491 AAAATGGCTTATGCCCCAGTTTATTGGAAAGGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATT-GAAAAGGGCTTATGCCCCAGTTTACCG
*
96084544 AAAAGGGCTTATGCCCCAGTTTATTGGAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
*
96084596 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTACGCCCCAGTTTACC-
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
*
96084647 AAAAGGGCTTTTGCCCCAG-TTATT-AAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCT
96084681 AGGCCTCCAG
Statistics
Matches: 177, Mismatches: 11, Indels: 7
0.91 0.06 0.04
Matches are distributed among these distances:
49 5 0.03
50 9 0.05
51 18 0.10
52 74 0.42
53 70 0.40
54 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
Found at i:96084936 original size:31 final size:30
Alignment explanation
Indices: 96084888--96084970 Score: 123
Period size: 31 Copynumber: 2.7 Consensus size: 30
96084878 CACTTATAGT
* *
96084888 AAAGGATTCAGCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCAGTGATATGATTTATGA
96084918 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCC-AGTGATATGATTTATGA
96084949 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGG-CCAGTGATATG
96084971 TCGAGACTGA
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
30 16 0.33
31 31 0.63
32 2 0.04
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.29
Consensus pattern (30 bp):
AAAGGCTTCGGCCAGTGATATGATTTATGA
Found at i:96090382 original size:43 final size:44
Alignment explanation
Indices: 96090321--96090507 Score: 249
Period size: 43 Copynumber: 4.3 Consensus size: 44
96090311 CAACGAACTT
* *
96090321 GCACACTTAGTGCTAATTAATTAATC-GAAGCTATAATTGTATC
1 GCACACTTAGTGCCAATTAATTAAGCGGAAGCTATAATTGTATC
96090364 GCACACTTAGTGCCAATTAATT-AGCGGAAGCTATAATTGTATC
1 GCACACTTAGTGCCAATTAATTAAGCGGAAGCTATAATTGTATC
* * *
96090407 GCACACTTAGTGCCAATTAA-TAAGCTGAAGCTATAATTATATT
1 GCACACTTAGTGCCAATTAATTAAGCGGAAGCTATAATTGTATC
* * * *
96090450 GCACACTTAGTCCCAACTT-AGT-AGCCGAAACTATAATTGTATC
1 GCACACTTAGTGCCAA-TTAATTAAGCGGAAGCTATAATTGTATC
96090493 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
96090508 TTACGTTAAA
Statistics
Matches: 129, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
42 3 0.02
43 123 0.95
44 3 0.02
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (44 bp):
GCACACTTAGTGCCAATTAATTAAGCGGAAGCTATAATTGTATC
Found at i:96095079 original size:46 final size:46
Alignment explanation
Indices: 96095012--96095189 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
96095002 TGTAACCCGC
** *
96095012 CCATAAGCAAACTCGGACTCAACTCAACGAGCTT-GGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGATGTTCGCAT
* * * *
96095058 CCATAGGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG-TTCGCAT
* * * **
96095104 ACATTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
96095151 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
96095190 CCCAAACATC
Statistics
Matches: 105, Mismatches: 21, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
45 4 0.04
46 66 0.63
47 34 0.32
48 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCAT
Found at i:96095180 original size:93 final size:93
Alignment explanation
Indices: 96095021--96095191 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
96095011 CCCATAAGCA
*** *
96095021 AACTCGGACTCAACTCAACGAGCTTGGGTGTTCGCATCCATAGGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
96095086 GAGTTCGGATGCCTAGTTACATTTCACG
66 GAGTTCGGATGCCTAGTTACATTTCACG
96095114 AACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 AACTCGGACTCAACTCAACGAGCTT-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
96095178 CGAGTTCGGATGCC
65 CGAGTTCGGATGCC
96095192 CAAACATCCT
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATTTCACG
Found at i:96098562 original size:40 final size:40
Alignment explanation
Indices: 96098514--96098781 Score: 464
Period size: 40 Copynumber: 6.7 Consensus size: 40
96098504 GCAAACACAT
* * *
96098514 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
96098554 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* * *
96098594 TTGCCTTCGGGTCATAGCCCGGACATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
96098634 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
96098674 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
96098714 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
96098754 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
96098782 TCCAATGCTC
Statistics
Matches: 215, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 215 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:96107395 original size:40 final size:40
Alignment explanation
Indices: 96107347--96107614 Score: 464
Period size: 40 Copynumber: 6.7 Consensus size: 40
96107337 GCAAACACAT
* * *
96107347 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
96107387 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* * *
96107427 TTGCCTTCGGGTCATAGCCCGGACATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
96107467 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
96107507 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
96107547 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
96107587 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
96107615 TCCAATGCTC
Statistics
Matches: 215, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 215 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:96111615 original size:16 final size:16
Alignment explanation
Indices: 96111596--96111650 Score: 64
Period size: 16 Copynumber: 3.7 Consensus size: 16
96111586 GAATAGAGAA
96111596 AGAGAAGAACAATCCT
1 AGAGAAGAACAATCCT
*
96111612 AGAGAATAACAA----
1 AGAGAAGAACAATCCT
96111624 AGAGAAGAACAATCCT
1 AGAGAAGAACAATCCT
*
96111640 AGAGAATAACA
1 AGAGAAGAACA
96111651 TCACTTCCTT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
12 11 0.34
16 21 0.66
ACGTcount: A:0.56, C:0.15, G:0.18, T:0.11
Consensus pattern (16 bp):
AGAGAAGAACAATCCT
Found at i:96111632 original size:28 final size:28
Alignment explanation
Indices: 96111585--96111650 Score: 114
Period size: 28 Copynumber: 2.3 Consensus size: 28
96111575 TGATGAAGAA
*
96111585 AGAATAGAGAAAGAGAAGAACAATCCTAG
1 AGAATA-ACAAAGAGAAGAACAATCCTAG
96111614 AGAATAACAAAGAGAAGAACAATCCTAG
1 AGAATAACAAAGAGAAGAACAATCCTAG
96111642 AGAATAACA
1 AGAATAACA
96111651 TCACTTCCTT
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
28 30 0.83
29 6 0.17
ACGTcount: A:0.58, C:0.12, G:0.20, T:0.11
Consensus pattern (28 bp):
AGAATAACAAAGAGAAGAACAATCCTAG
Found at i:96118009 original size:22 final size:19
Alignment explanation
Indices: 96117959--96117999 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
96117949 GACATCCATA
*
96117959 ATAAGCTAAAATGTTTATT
1 ATAAGCTTAAATGTTTATT
96117978 ATAAGCTTAAATGTTTATT
1 ATAAGCTTAAATGTTTATT
96117997 ATA
1 ATA
96118000 CCAAGGTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.41, C:0.05, G:0.10, T:0.44
Consensus pattern (19 bp):
ATAAGCTTAAATGTTTATT
Found at i:96118969 original size:43 final size:43
Alignment explanation
Indices: 96118885--96119024 Score: 126
Period size: 43 Copynumber: 3.3 Consensus size: 43
96118875 TCTGAGACAT
* * *
96118885 CGTGTAAGACCGTGTCTGGGACACAGGCCA-CGAT-TGAGATTTA
1 CGTGTAAGACCATGTCTGGGACAAAGG-CATCGATAT-TGATTTA
* **
96118928 CGTATAAGACCATGTCTGGGACATCGGCATCG-TATCTGATTT-
1 CGTGTAAGACCATGTCTGGGACAAAGGCATCGATAT-TGATTTA
* * * *
96118970 TGTGTAAGACCCTTTCTGGGACAAAGGCATCGATATTGAATTA
1 CGTGTAAGACCATGTCTGGGACAAAGGCATCGATATTGATTTA
*
96119013 CATGTAAGACCA
1 CGTGTAAGACCA
96119025 CGTCCATGAT
Statistics
Matches: 77, Mismatches: 16, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
42 34 0.44
43 43 0.56
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTGGGACAAAGGCATCGATATTGATTTA
Found at i:96120430 original size:26 final size:25
Alignment explanation
Indices: 96120376--96120427 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 25
96120366 TTGAATATTA
*
96120376 TTTAATATTTTTTCATTTATGTAAT
1 TTTAATATTTTTTCATTTATATAAT
96120401 TTTAATTATTTTTTC-TTT-TATAAT
1 TTTAA-TATTTTTTCATTTATATAAT
96120425 TTT
1 TTT
96120428 TTATCATAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 8 0.32
25 8 0.32
26 9 0.36
ACGTcount: A:0.25, C:0.04, G:0.02, T:0.69
Consensus pattern (25 bp):
TTTAATATTTTTTCATTTATATAAT
Found at i:96135956 original size:25 final size:25
Alignment explanation
Indices: 96135920--96135995 Score: 70
Period size: 25 Copynumber: 3.1 Consensus size: 25
96135910 CTCATAAAAG
*
96135920 CAATAATC-GGTAAGCTCAAGTGAGC
1 CAATAATCAGGTAAGCTCAA-AGAGC
96135945 CAATAA-CAGGT-AGCTCCAAAGAGC
1 CAATAATCAGGTAAGCT-CAAAGAGC
* *
96135969 CATTAATCAGG-AAGCTCTAAATAGC
1 CAATAATCAGGTAAGCTC-AAAGAGC
96135994 CA
1 CA
96135996 TATATTGGGA
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
24 15 0.35
25 28 0.65
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.18
Consensus pattern (25 bp):
CAATAATCAGGTAAGCTCAAAGAGC
Found at i:96136068 original size:26 final size:26
Alignment explanation
Indices: 96136037--96136096 Score: 93
Period size: 26 Copynumber: 2.3 Consensus size: 26
96136027 GAAGCTTCAG
96136037 AGAGCCATTAATTAAGAAGCTCACAA
1 AGAGCCATTAATTAAGAAGCTCACAA
* **
96136063 AGAGCCTTTAATTGGGAAGCTCACAA
1 AGAGCCATTAATTAAGAAGCTCACAA
96136089 AGAGCCAT
1 AGAGCCAT
96136097 ATAACGGGAG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (26 bp):
AGAGCCATTAATTAAGAAGCTCACAA
Found at i:96136116 original size:26 final size:26
Alignment explanation
Indices: 96136052--96136114 Score: 85
Period size: 26 Copynumber: 2.5 Consensus size: 26
96136042 CATTAATTAA
* *
96136052 GAAGCTCACAAAGAGCCTTTAATTGG
1 GAAGCTCACAAAGAGCCTATAATCGG
96136078 GAAGCTCACAAAGAGCCATATAA-CGG
1 GAAGCTCACAAAGAGCC-TATAATCGG
96136104 G-AGCTCACAAA
1 GAAGCTCACAAA
96136115 AGTTGTGGTG
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
25 10 0.29
26 20 0.59
27 4 0.12
ACGTcount: A:0.40, C:0.22, G:0.22, T:0.16
Consensus pattern (26 bp):
GAAGCTCACAAAGAGCCTATAATCGG
Found at i:96136154 original size:23 final size:23
Alignment explanation
Indices: 96136128--96136175 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
96136118 TGTGGTGTGC
*
96136128 CCACAACAAATGCAAGATCACGA
1 CCACAACAAATGAAAGATCACGA
*
96136151 CCACAACACATGAAAGATCACGA
1 CCACAACAAATGAAAGATCACGA
96136174 CC
1 CC
96136176 GATCGGGATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.46, C:0.33, G:0.12, T:0.08
Consensus pattern (23 bp):
CCACAACAAATGAAAGATCACGA
Found at i:96145460 original size:24 final size:25
Alignment explanation
Indices: 96145433--96145511 Score: 79
Period size: 25 Copynumber: 3.2 Consensus size: 25
96145423 ATATCAAGGG
* *
96145433 AGCTCATAAGAGCTAT-TAACGGGA
1 AGCTCATAAGAACTATATAACAGGA
*
96145457 AGCTCGTAAGAACTATATAACAGGA
1 AGCTCATAAGAACTATATAACAGGA
* ** * *
96145482 ACCTCGCAAAAACCATATAACAGGA
1 AGCTCATAAGAACTATATAACAGGA
96145507 AGCTC
1 AGCTC
96145512 TAGAGGGCCA
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
24 14 0.30
25 32 0.70
ACGTcount: A:0.42, C:0.22, G:0.19, T:0.18
Consensus pattern (25 bp):
AGCTCATAAGAACTATATAACAGGA
Found at i:96147031 original size:18 final size:18
Alignment explanation
Indices: 96147000--96147038 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
96146990 ATGCCATGTG
*
96147000 TGTATTCTAACCCTTATA
1 TGTATCCTAACCCTTATA
*
96147018 TGTATCCTATCCCTTATA
1 TGTATCCTAACCCTTATA
96147036 TGT
1 TGT
96147039 TTCTTTTTCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.23, C:0.23, G:0.08, T:0.46
Consensus pattern (18 bp):
TGTATCCTAACCCTTATA
Found at i:96151018 original size:24 final size:23
Alignment explanation
Indices: 96150958--96151023 Score: 80
Period size: 25 Copynumber: 2.7 Consensus size: 23
96150948 TGCGAGGTTA
96150958 TGCGGCACTATGTGTGCAAAAAC
1 TGCGGCACTATGTGTGCAAAAAC
*
96150981 TACATGGCACTATGTGTGCAAGGAAAC
1 TGC--GGCACTATGTGTGCAA--AAAC
96151008 -GCGGCACTATGTGTGC
1 TGCGGCACTATGTGTGC
96151024 GAATGAGTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
23 2 0.05
24 14 0.38
25 16 0.43
26 1 0.03
27 4 0.11
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (23 bp):
TGCGGCACTATGTGTGCAAAAAC
Found at i:96163838 original size:62 final size:60
Alignment explanation
Indices: 96163722--96163838 Score: 137
Period size: 62 Copynumber: 1.9 Consensus size: 60
96163712 TTGTACAAAC
* * ****
96163722 TATTTTTATATTATTTCATTTAATAAAATAAAATTTGTTTTGAATATTTTAATAGTCAAT
1 TATTTTTATATTATTTCATTTAATAAAATAAAAGTTCTTTTGAATAAGGCAATAGTCAAT
*
96163782 TATTTTTATATT-TTGTCCTATTTAATAAAATAGAAGTTCTTTTGAATAAGGCAATAG
1 TATTTTTATATTATT-T-C-ATTTAATAAAATAAAAGTTCTTTTGAATAAGGCAATAG
96163839 AAATTATGCA
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
59 2 0.04
60 13 0.28
61 1 0.02
62 31 0.66
ACGTcount: A:0.37, C:0.05, G:0.09, T:0.50
Consensus pattern (60 bp):
TATTTTTATATTATTTCATTTAATAAAATAAAAGTTCTTTTGAATAAGGCAATAGTCAAT
Found at i:96180676 original size:40 final size:40
Alignment explanation
Indices: 96180593--96180770 Score: 220
Period size: 40 Copynumber: 4.5 Consensus size: 40
96180583 AAGCCAAGTA
* * * * * *
96180593 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCACTCGAATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
96180632 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
96180672 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
96180712 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAG-AGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA-CAAATG
96180752 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
96180771 TTATCATCCA
Statistics
Matches: 125, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
39 14 0.11
40 111 0.89
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:96183045 original size:39 final size:40
Alignment explanation
Indices: 96183000--96183167 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
96182990 CGGGGTTTAG
* * *
96183000 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
96183039 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
96183079 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
96183119 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
96183160 CCGGATAT
1 CCGGATAT
96183168 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:96183150 original size:41 final size:40
Alignment explanation
Indices: 96183023--96183167 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
96183013 CTCGCACAAG
* * * * *
96183023 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
96183063 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
96183103 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
96183144 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
96183168 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:96184387 original size:37 final size:37
Alignment explanation
Indices: 96184358--96184429 Score: 144
Period size: 37 Copynumber: 1.9 Consensus size: 37
96184348 GAACTCCTTC
96184358 CTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAATT
1 CTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAATT
96184395 CTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 CTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
96184430 AAAGGATGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.31
Consensus pattern (37 bp):
CTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAATT
Found at i:96191102 original size:40 final size:40
Alignment explanation
Indices: 96191032--96191197 Score: 149
Period size: 40 Copynumber: 4.2 Consensus size: 40
96191022 CGGGGTTTAG
** * *
96191032 CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAAC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * *
96191071 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAAC
* * *
96191111 CCGGATATAGTCGCTAGCACAAATGCCTTCGGATCTT-AG
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * * *
96191150 TCGGATGTAGTCGCTTAGCACAAAAGCCTTC-GGACTTAGC
1 CCGGATATAGTCAC-TAGCACAAATGCCTTCGGGTCTTAAC
96191190 CCGGATAT
1 CCGGATAT
96191198 CATTCGAGTA
Statistics
Matches: 100, Mismatches: 24, Indels: 5
0.78 0.19 0.04
Matches are distributed among these distances:
39 31 0.31
40 69 0.69
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:96191188 original size:39 final size:39
Alignment explanation
Indices: 96191055--96191197 Score: 171
Period size: 40 Copynumber: 3.6 Consensus size: 39
96191045 CTCGCACAAG
* * * * *
96191055 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTC-GGACTTAGCCCGGATATAGTCGCTAGCACAAAT
96191095 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTC-GGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
96191135 GCCTTCGGATCTTAG-TCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
96191175 GCCTTCGGACTTAGCCCGGATAT
1 GCCTTCGGACTTAGCCCGGATAT
96191198 CATTCGAGTA
Statistics
Matches: 90, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
39 20 0.22
40 70 0.78
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (39 bp):
GCCTTCGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Done.