Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 287 of 349
Found at i:96204315 original size:5 final size:5
Alignment explanation
Indices: 96204305--96204335 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
96204295 AATGCCAACC
96204305 ATAAA ATAAA ATAAA AT-AA ATAAA ATAAA AT
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA AT
96204336 TTTATTTTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.16
5 21 0.84
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (5 bp):
ATAAA
Found at i:96204327 original size:14 final size:14
Alignment explanation
Indices: 96204308--96204335 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
96204298 GCCAACCATA
96204308 AAATAAAATAAAAT
1 AAATAAAATAAAAT
96204322 AAATAAAATAAAAT
1 AAATAAAATAAAAT
96204336 TTTATTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (14 bp):
AAATAAAATAAAAT
Found at i:96205389 original size:125 final size:126
Alignment explanation
Indices: 96205035--96205550 Score: 564
Period size: 124 Copynumber: 4.1 Consensus size: 126
96205025 AAACAGGAAT
* * * * *
96205035 TACTGTAGAAAAAGAGTGTCCACGTGGGATCTTTTTTCAGTATTTTTGCTGACAATGCATCCTGC
1 TACTGTAGAAAAAAAGAGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTGC
* * * *** *
96205100 TTGAAGCGTTTTTGACACT-GTTTTTTCAGAACAGTCTTCTCAAAA-AAAAATTT-AGGAAC
66 TTGAAGCGTTTTTGAAACTAG-TTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAAGAAC
* * * * *
96205159 TACTGTAGAAAAAGAATA-TTCACGTGGGAGCTTTTTTCAGTAATTTCGCTAAAAGTGCATCCTG
1 TACTGTAGAAAAA-AAGAGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTG
** * * *
96205223 CTTGAA--GTTTTTGGCATTATTTTTTCATAACCGTCTTCTCAAAATTATTTTTTCAAGAAC
65 CTTGAAGCGTTTTTGAAACTAGTTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAAGAAC
* ** *
96205283 TACTGTAGAAAAAAAGAGTCTAAATGGGA-TTTTTTTCAGTAATTTTGCTGACAGTGCATCCTGC
1 TACTGTAGAAAAAAAGAGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTGC
* *
96205347 TTGAAGCGTTTTTGAAACTAGTTTTTCAAAACCGTCTTCTCAAAATTATTTTTTCAGGAAC
66 TTGAAGCGTTTTTGAAACTAGTTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAAGAAC
* * ** * * *
96205408 TACAGTAGAAAAAGAGCTTCCACGTGGAAGCTTTTTTCAGTAATGTTGCTGACAGTACATCCTGC
1 TACTGTAGAAAAAAAGAGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTGC
* * **
96205473 TTGAAGTGTTTTTGAAACATTA-TCTTTTCAGAACCGTTTTCTCAAAATTAATTTTTTTGA-AAC
66 TTGAAGCGTTTTTGAAAC--TAGT-TTTTCAGAACCGTCTTCTCAAAATT-ATTTTTTCAAGAAC
96205536 TACTGTAGAAAAAAA
1 TACTGTAGAAAAAAA
96205551 AAACAAAATC
Statistics
Matches: 326, Mismatches: 54, Indels: 20
0.81 0.14 0.05
Matches are distributed among these distances:
122 32 0.10
123 43 0.13
124 83 0.25
125 70 0.21
126 49 0.15
127 1 0.00
128 41 0.13
129 7 0.02
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37
Consensus pattern (126 bp):
TACTGTAGAAAAAAAGAGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTGC
TTGAAGCGTTTTTGAAACTAGTTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCAAGAAC
Found at i:96205687 original size:68 final size:65
Alignment explanation
Indices: 96205605--96205738 Score: 146
Period size: 67 Copynumber: 2.0 Consensus size: 65
96205595 CTAAACACAA
* * * *
96205605 AATTATTTTTTAAAAAAACTAGACCCTAATTTAATTAATTTTCT-TAAAAACTCTAAA-CTATAA
1 AATTATTTTTTAAAAAAACTAAAACCTAATTTAATT-ATTTT-TAAAAAAACCCTAAACCT-TAA
96205668 TTT
63 TTT
***
96205671 AATTAATTTATTTAAAACCCCTAAAACCTAATTTAATTATTTTTAAAAAAACCCTAAACCTTAAT
1 AATT-ATTT-TTTAAAAAAACTAAAACCTAATTTAATTATTTTTAAAAAAACCCTAAACCTTAAT
96205736 TT
64 TT
96205738 A
1 A
96205739 TTTTTAAAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
66 5 0.09
67 27 0.47
68 25 0.44
ACGTcount: A:0.45, C:0.14, G:0.01, T:0.40
Consensus pattern (65 bp):
AATTATTTTTTAAAAAAACTAAAACCTAATTTAATTATTTTTAAAAAAACCCTAAACCTTAATTT
Found at i:96205736 original size:33 final size:33
Alignment explanation
Indices: 96205605--96205738 Score: 123
Period size: 34 Copynumber: 4.0 Consensus size: 33
96205595 CTAAACACAA
* * * *
96205605 AATTATTTTTTAAAAAA-ACTAGACCCTAATTT
1 AATTAATTTTTAAAAAACCCTAAACCTTAATTT
* *
96205637 AATTAATTTTCTTAAAAACTCTAAA-CTATAATTT
1 AATTAATTTT-TAAAAAACCCTAAACCT-TAATTT
* *
96205671 AATTAATTTATTTAAAACCCCTAAAACC-TAATTT
1 AATTAATTT-TTAAAAAACCCT-AAACCTTAATTT
96205705 AATT-ATTTTTAAAAAAACCCTAAACCTTAATTT
1 AATTAATTTTT-AAAAAACCCTAAACCTTAATTT
96205738 A
1 A
96205739 TTTTTAAAAA
Statistics
Matches: 85, Mismatches: 9, Indels: 15
0.78 0.08 0.14
Matches are distributed among these distances:
32 16 0.19
33 26 0.31
34 38 0.45
35 4 0.05
36 1 0.01
ACGTcount: A:0.45, C:0.14, G:0.01, T:0.40
Consensus pattern (33 bp):
AATTAATTTTTAAAAAACCCTAAACCTTAATTT
Found at i:96208352 original size:267 final size:268
Alignment explanation
Indices: 96207773--96208826 Score: 1969
Period size: 268 Copynumber: 3.9 Consensus size: 268
96207763 TAAAATAATC
96207773 TACACCAATATATTTGATTTTTCAAATTCTTAAAATAAATTCAAGTATTTAGTTCTTTAAATCAA
1 TACA-CAATATATTTGATTTTTCAAATTCTTAAAATAAATTCAAGTATTTAGTTCTTTAAATCAA
*
96207838 TTTCTAAAACTTTTTTCTCTCATAAATATTTTTGTATATTTTTATTTTTATTTTAAAATATAAAT
65 TTTCTAACACTTTTTTCTCTCATAAATATTTTTGTATATTTTTATTTTTATTTTAAAATATAAAT
96207903 GTCACTGGGATATATTTTC--ATATATATATAATATTATATTAGAGACTTTTAAATATATCTATA
130 GTCACTGGGATATATTTTCATATATATATATAATATTATATTAGAGACTTTTAAATATATCTATA
96207966 AAATAATCGTAAATTTAAAATATATATACACCATTTAATAAATTATAGATGAGTTTAGTTCAAGT
195 AAATAATCGTAAATTTAAAATATATATACACCATTTAATAAATTATAGATGAGTTTAGTTCAAG-
96208031 ATATATATATA
259 -TATATATATA
96208042 TACACAATATATTTGATTTTTCAAATTCTTAAAATAAATTCAAGTATTTAGTTCTTTAAATCAAT
1 TACACAATATATTTGATTTTTCAAATTCTTAAAATAAATTCAAGTATTTAGTTCTTTAAATCAAT
96208107 TTCTAACACTTTTTTCTCTCATAAATATTTTTGTATA-TTTTATTTTTATTTTAAAATATAAATG
66 TTCTAACACTTTTTTCTCTCATAAATATTTTTGTATATTTTTATTTTTATTTTAAAATATAAATG
96208171 TCACTGGGATATATTTTCATATATATATATAATATTATATTAGAGACTTTTAAATATATCTATAA
131 TCACTGGGATATATTTTCATATATATATATAATATTATATTAGAGACTTTTAAATATATCTATAA
96208236 AATAATCGTAAATTTAAAATATATATACACCATTTAATAAATTATAGATGAGTTTAGTTCAAGTA
196 AATAATCGTAAATTTAAAATATATATACACCATTTAATAAATTATAGATGAGTTTAGTTCAAGTA
96208301 TATATATA
261 TATATATA
96208309 TACACAATATATTTGATTTTTCAAATTCTTAAAATAAATTCAAGTATTTAGTTCTTTAAATCAAT
1 TACACAATATATTTGATTTTTCAAATTCTTAAAATAAATTCAAGTATTTAGTTCTTTAAATCAAT
*
96208374 TTCTAACACTTTTTTCTCTCATAAATATTTTTTTATATTTTTATTTTTATTTTAAAATATAAATG
66 TTCTAACACTTTTTTCTCTCATAAATATTTTTGTATATTTTTATTTTTATTTTAAAATATAAATG
*
96208439 TCACTGGGATATATTTTTATATATATATAT-ATA-TATATTAGAGACTTTTAAATATATCTATAA
131 TCACTGGGATATATTTTCATATATATATATAATATTATATTAGAGACTTTTAAATATATCTATAA
96208502 AATAATCGTAAATTTAAAATATATATACACCATTTAATAAATTATAGATGAGTTTAGTTCAAG--
196 AATAATCGTAAATTTAAAATATATATACACCATTTAATAAATTATAGATGAGTTTAGTTCAAGTA
96208565 TATATATA
261 TATATATA
96208573 TACACAATATATTTGATTTTTCAAATTCTTAAAATAAATTCAAGTATTTAGTTCTTTAAATCAAT
1 TACACAATATATTTGATTTTTCAAATTCTTAAAATAAATTCAAGTATTTAGTTCTTTAAATCAAT
96208638 TTCTAACACTTTTTTCTCTCATAAATATTTTTGTATATTTTTATTTTTATTTTAAAATATAAATG
66 TTCTAACACTTTTTTCTCTCATAAATATTTTTGTATATTTTTATTTTTATTTTAAAATATAAATG
*
96208703 TCATTGGGATATATTTTCATATATATATATATAATATTATATTAGAGACTTTTAAATATATCTAT
131 TCACTGGGATATATTTTC--ATATATATATATAATATTATATTAGAGACTTTTAAATATATCTAT
*
96208768 AAAATAATCGTAAATTTAAAATATTTATACACCATTTAATAAATTATAGATGAGTTTAG
194 AAAATAATCGTAAATTTAAAATATATATACACCATTTAATAAATTATAGATGAGTTTAG
96208827 ATGGACGACG
Statistics
Matches: 771, Mismatches: 7, Indels: 15
0.97 0.01 0.02
Matches are distributed among these distances:
264 153 0.20
266 105 0.14
267 162 0.21
268 239 0.31
269 112 0.15
ACGTcount: A:0.39, C:0.08, G:0.06, T:0.46
Consensus pattern (268 bp):
TACACAATATATTTGATTTTTCAAATTCTTAAAATAAATTCAAGTATTTAGTTCTTTAAATCAAT
TTCTAACACTTTTTTCTCTCATAAATATTTTTGTATATTTTTATTTTTATTTTAAAATATAAATG
TCACTGGGATATATTTTCATATATATATATAATATTATATTAGAGACTTTTAAATATATCTATAA
AATAATCGTAAATTTAAAATATATATACACCATTTAATAAATTATAGATGAGTTTAGTTCAAGTA
TATATATA
Found at i:96209460 original size:25 final size:25
Alignment explanation
Indices: 96209428--96209475 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
96209418 TTATATGTAT
96209428 AAAATATA-TGT-TATTATGAAATTA
1 AAAATATATTGTATA-TATGAAATTA
96209452 AAAATTATATTGTATATATGAAAT
1 AAAA-TATATTGTATATATGAAAT
96209476 ATATTTTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 4 0.19
25 4 0.19
26 11 0.52
27 2 0.10
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (25 bp):
AAAATATATTGTATATATGAAATTA
Found at i:96216973 original size:24 final size:24
Alignment explanation
Indices: 96216946--96217043 Score: 117
Period size: 24 Copynumber: 4.0 Consensus size: 24
96216936 AAGGCTGTCA
96216946 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
96216970 GGAGAGGATTTAGGAGATGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
96216994 GGAGAGGATTTAGGAGCT-AGTAAA
1 GGAGAAGATTTAGGAGCTGA-TAAG
* *
96217018 GGAGAATATTTAAGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
96217043 G
1 G
96217044 AGCAGGAGTT
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
23 1 0.02
24 58 0.92
25 4 0.06
ACGTcount: A:0.38, C:0.04, G:0.37, T:0.21
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:96222017 original size:33 final size:34
Alignment explanation
Indices: 96221940--96222020 Score: 94
Period size: 33 Copynumber: 2.4 Consensus size: 34
96221930 TTACAGCCGT
*
96221940 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTT
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
* * **
96221974 AATGTAATCTGAA-AA-GGGCTCTGGCCCAGTATC
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGT-TC
96222007 ACTGTTATCTGAAT
1 ACTGTTATCTGAAT
96222021 GGGCTTAGGC
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
32 13 0.34
33 14 0.37
34 11 0.29
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (34 bp):
ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
Found at i:96222025 original size:32 final size:31
Alignment explanation
Indices: 96221940--96222032 Score: 78
Period size: 32 Copynumber: 2.8 Consensus size: 31
96221930 TTACAGCCGT
*
96221940 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTT
1 ACTGTTATCTGAAT---GGGCTAAGGCCCAGTTC
* * * **
96221974 AATGTAATCTGAAAAGGGCTCTGGCCCAGTATC
1 ACTGTTATCTG-AATGGGCTAAGGCCCAGT-TC
*
96222007 ACTGTTATCTGAATGGGCTTAGGCCC
1 ACTGTTATCTGAATGGGCTAAGGCCC
96222033 GATGGGCTTG
Statistics
Matches: 46, Mismatches: 11, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
32 25 0.54
33 10 0.22
34 9 0.20
35 2 0.04
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (31 bp):
ACTGTTATCTGAATGGGCTAAGGCCCAGTTC
Found at i:96226428 original size:21 final size:21
Alignment explanation
Indices: 96226404--96226443 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
96226394 CAATAATACG
* *
96226404 AGATAATCTATTTTAGGAAAT
1 AGATAATATATTGTAGGAAAT
96226425 AGATAATATATTGTAGGAA
1 AGATAATATATTGTAGGAA
96226444 GTCAAGGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.45, C:0.03, G:0.17, T:0.35
Consensus pattern (21 bp):
AGATAATATATTGTAGGAAAT
Found at i:96231252 original size:22 final size:24
Alignment explanation
Indices: 96231227--96231282 Score: 62
Period size: 26 Copynumber: 2.3 Consensus size: 24
96231217 ATAATTTTCA
*
96231227 ATATTATTATA-AATACA-TATTT
1 ATATTATTATATAATAAATTATTT
96231249 ATATTTAATTATATAATAAATTATTT
1 ATA-TT-ATTATATAATAAATTATTT
96231275 ATTATTAT
1 A-TATTAT
96231283 AATTTCATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
22 3 0.11
23 2 0.07
24 6 0.21
25 7 0.25
26 8 0.29
27 2 0.07
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.54
Consensus pattern (24 bp):
ATATTATTATATAATAAATTATTT
Found at i:96231273 original size:26 final size:26
Alignment explanation
Indices: 96231232--96231286 Score: 69
Period size: 24 Copynumber: 2.1 Consensus size: 26
96231222 TTTCAATATT
*
96231232 ATTATAAATACATATTTA-TATT-TA
1 ATTATAAATAAATATTTATTATTATA
96231256 ATTATATAATAAATTATTTATTATTATA
1 ATTATA-AATAAA-TATTTATTATTATA
96231284 ATT
1 ATT
96231287 TCATTTTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 6 0.23
25 5 0.19
26 6 0.23
27 4 0.15
28 5 0.19
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (26 bp):
ATTATAAATAAATATTTATTATTATA
Found at i:96232396 original size:29 final size:29
Alignment explanation
Indices: 96232338--96232392 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 29
96232328 TAACATCATT
* *
96232338 TTATATTTATATATTACATACATAAATAA
1 TTATATTTATATAATACATACAAAAATAA
* *
96232367 TTATATTTATCTAATATATA-AAAAAT
1 TTATATTTATATAATACATACAAAAAT
96232393 TAATGTATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
28 5 0.23
29 17 0.77
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.45
Consensus pattern (29 bp):
TTATATTTATATAATACATACAAAAATAA
Found at i:96234739 original size:41 final size:41
Alignment explanation
Indices: 96234694--96234788 Score: 145
Period size: 41 Copynumber: 2.3 Consensus size: 41
96234684 AAAAAATAAC
*
96234694 TTATATGTTATAAAAATGTTATAATATAATTATTTGTAAAT
1 TTATATGTTATAAAAATGTTATAATATAATTATTTGTAAAA
* *
96234735 TTATATGTTATACAAATGTTATAATATACTTATTTGTAAAA
1 TTATATGTTATAAAAATGTTATAATATAATTATTTGTAAAA
* *
96234776 ATAAATGTTATAA
1 TTATATGTTATAA
96234789 TTTTTTCCAT
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 48 1.00
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.46
Consensus pattern (41 bp):
TTATATGTTATAAAAATGTTATAATATAATTATTTGTAAAA
Found at i:96234931 original size:22 final size:20
Alignment explanation
Indices: 96234895--96234934 Score: 62
Period size: 22 Copynumber: 1.9 Consensus size: 20
96234885 GGTATATATA
96234895 TTATAAATTTTGTATTATTT
1 TTATAAATTTTGTATTATTT
96234915 TTATATAATTTTGGTATTAT
1 TTATA-AATTTT-GTATTAT
96234935 AAAAAGGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.28
21 6 0.33
22 7 0.39
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.62
Consensus pattern (20 bp):
TTATAAATTTTGTATTATTT
Found at i:96237014 original size:43 final size:43
Alignment explanation
Indices: 96236947--96237202 Score: 327
Period size: 43 Copynumber: 6.0 Consensus size: 43
96236937 ATATCGTACA
* *
96236947 ATGCCAACGTCCCAGACGTAGTCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCACATATCG
* *
96236990 ATGCTAACGTCCTAGACATGGTCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCACATATCG
* *
96237033 ATGCC-ACTGTCCCAGACAGGGTCTTACATGTAATCACATATTG
1 ATGCCAAC-GTCCCAGACATGGTCTTACATGTAATCACATATCG
* * * **
96237076 ATGCCAACGTCCCAGACGTAGTCTTATACATAATCACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCACATATCG
* * *
96237119 ATGCCAACATCCCAAACTTGGTCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCACATATCG
* * *
96237162 ATGCC-ACTGTCCCAGAAAGGGTCTTACACGTAATCACATAT
1 ATGCCAAC-GTCCCAGACATGGTCTTACATGTAATCACATAT
96237203 TGAAAATCCT
Statistics
Matches: 182, Mismatches: 28, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
42 4 0.02
43 176 0.97
44 2 0.01
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.27
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACATGTAATCACATATCG
Found at i:96237177 original size:129 final size:129
Alignment explanation
Indices: 96236947--96237205 Score: 428
Period size: 129 Copynumber: 2.0 Consensus size: 129
96236937 ATATCGTACA
** * * * *
96236947 ATGCCAACGTCCCAGACGTAGTCTTACATGTAATCACATATCGATGCTAACGTCCTAGACATGGT
1 ATGCCAACGTCCCAGACGTAGTCTTACACATAATCACATATCGATGCCAACATCCCAAACATGGT
* *
96237012 CTTACATGTAATCACATATCGATGCCACTGTCCCAGACAGGGTCTTACATGTAATCACATATTG
66 CTTACATGTAATCACATATCGATGCCACTGTCCCAGAAAGGGTCTTACACGTAATCACATATTG
* *
96237076 ATGCCAACGTCCCAGACGTAGTCTTATACATAATCACATATCGATGCCAACATCCCAAACTTGGT
1 ATGCCAACGTCCCAGACGTAGTCTTACACATAATCACATATCGATGCCAACATCCCAAACATGGT
96237141 CTTACATGTAATCACATATCGATGCCACTGTCCCAGAAAGGGTCTTACACGTAATCACATATTG
66 CTTACATGTAATCACATATCGATGCCACTGTCCCAGAAAGGGTCTTACACGTAATCACATATTG
96237205 A
1 A
96237206 AAATCCTATG
Statistics
Matches: 120, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
129 120 1.00
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (129 bp):
ATGCCAACGTCCCAGACGTAGTCTTACACATAATCACATATCGATGCCAACATCCCAAACATGGT
CTTACATGTAATCACATATCGATGCCACTGTCCCAGAAAGGGTCTTACACGTAATCACATATTG
Found at i:96245398 original size:22 final size:21
Alignment explanation
Indices: 96245373--96245420 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
96245363 TTTAATTATG
96245373 TTTAAAAAACTATTACTATTT
1 TTTAAAAAACTATTACTATTT
* * * *
96245394 ATTTATAAATCTTTTATTATTT
1 -TTTAAAAAACTATTACTATTT
96245416 TTTAA
1 TTTAA
96245421 TTTATTTAAT
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (21 bp):
TTTAAAAAACTATTACTATTT
Found at i:96250353 original size:40 final size:40
Alignment explanation
Indices: 96250309--96250504 Score: 290
Period size: 40 Copynumber: 4.9 Consensus size: 40
96250299 GGATATAGCT
* *
96250309 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* *
96250349 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATT-TGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTATAGTA
*
96250389 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-AATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
*
96250429 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-AATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
96250469 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
96250505 CATCCGAATA
Statistics
Matches: 144, Mismatches: 8, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
40 141 0.98
41 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:96258379 original size:39 final size:39
Alignment explanation
Indices: 96258287--96258475 Score: 315
Period size: 39 Copynumber: 4.8 Consensus size: 39
96258277 GGATATAGCT
* * *
96258287 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT-TAGTA
* *
96258327 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATTTGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGTA
96258366 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGTA
*
96258405 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGTA
96258444 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
96258476 TTATCATCCG
Statistics
Matches: 141, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 111 0.79
40 30 0.21
ACGTcount: A:0.24, C:0.30, G:0.23, T:0.23
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTAGTA
Found at i:96264706 original size:40 final size:40
Alignment explanation
Indices: 96264651--96264841 Score: 287
Period size: 40 Copynumber: 4.8 Consensus size: 40
96264641 CGGATGATAA
*
96264651 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTGATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
96264691 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
* * *
96264731 CCGGGCTAAGTCACGAAGGCATTTGTGCGAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
* *
96264771 CCGGGCTAAGTCCCG-AGGCATTGGTGCGAGTTACT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-T
* *
96264810 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
96264842 AGCTATATCC
Statistics
Matches: 137, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
38 1 0.01
39 32 0.23
40 104 0.76
ACGTcount: A:0.23, C:0.23, G:0.30, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
Found at i:96264852 original size:79 final size:80
Alignment explanation
Indices: 96264647--96264853 Score: 296
Period size: 79 Copynumber: 2.6 Consensus size: 80
96264637 TATTCGGATG
96264647 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTGAT-TCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGCTAAGTCCCGAAGGC
*
96264711 ATTTGTGCGAGTTACT
65 ATTGGTGCGAGTTACT
* * * *
96264727 A-ATTCCGGGCTAAGTCACGAAGGCATTTGTGCGAGTTACCAAATCCGGGCTAAGTCCCG-AGGC
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGC
96264790 ATTGGTGCGAGTTACT
65 ATTGGTGCGAGTTACT
* *
96264806 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCCGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGG
96264854 TTAAATGCCG
Statistics
Matches: 112, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
78 2 0.02
79 58 0.52
80 52 0.46
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
TTGGTGCGAGTTACT
Found at i:96273376 original size:5 final size:5
Alignment explanation
Indices: 96273366--96273461 Score: 72
Period size: 6 Copynumber: 18.2 Consensus size: 5
96273356 TATGTCTTTC
* *
96273366 AAAAT AAAAT AATAA- AAATT GAAAT GAAAAT AAAAAT CAAAAT AAAAAT
1 AAAAT AAAAT AA-AAT AAAAT AAAAT -AAAAT -AAAAT -AAAAT -AAAAT
*
96273415 AAAAAT AAAAT -AAAG AAAAT AAAAAT AAGAAT -AAAT AAAAT AAAAT
1 -AAAAT AAAAT AAAAT AAAAT -AAAAT AA-AAT AAAAT AAAAT AAAAT
96273461 A
1 A
96273462 GGAGGATTCA
Statistics
Matches: 75, Mismatches: 9, Indels: 14
0.77 0.09 0.14
Matches are distributed among these distances:
4 7 0.09
5 33 0.44
6 35 0.47
ACGTcount: A:0.76, C:0.01, G:0.04, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:96273396 original size:6 final size:6
Alignment explanation
Indices: 96273366--96273449 Score: 78
Period size: 6 Copynumber: 13.3 Consensus size: 6
96273356 TATGTCTTTC
* * * *
96273366 AAAATAA AATAATA AAAATT GAAATG AAAATA AAAATC AAAATA AAAATA
1 AAAAT-A AA-AATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
* *
96273416 AAAATA AAATAAA GAAAATA AAAATA AGAATA AA
1 AAAATA AAA-ATA -AAAATA AAAATA AAAATA AA
96273450 TAAAATAAAA
Statistics
Matches: 63, Mismatches: 11, Indels: 7
0.78 0.14 0.09
Matches are distributed among these distances:
6 48 0.76
7 9 0.14
8 6 0.10
ACGTcount: A:0.76, C:0.01, G:0.05, T:0.18
Consensus pattern (6 bp):
AAAATA
Found at i:96273406 original size:38 final size:36
Alignment explanation
Indices: 96273364--96273459 Score: 104
Period size: 38 Copynumber: 2.5 Consensus size: 36
96273354 GATATGTCTT
*
96273364 TCAAAATAAAATAATAAAAATTGAAATGAAAATAAAAA
1 TCAAAATAAAATAATAAAAAAT-AAA-GAAAATAAAAA
*
96273402 TCAAAATAAAAATAAAAATAAAATAAAGAAAATAAAAA
1 TCAAAAT-AAAATAATAA-AAAATAAAGAAAATAAAAA
*
96273440 T-AAGAATAAATAAAATAAAA
1 TCAA-AATAAA-ATAATAAAA
96273460 TAGGAGGATT
Statistics
Matches: 50, Mismatches: 4, Indels: 9
0.79 0.06 0.14
Matches are distributed among these distances:
37 7 0.14
38 27 0.54
39 12 0.24
40 4 0.08
ACGTcount: A:0.75, C:0.02, G:0.04, T:0.19
Consensus pattern (36 bp):
TCAAAATAAAATAATAAAAAATAAAGAAAATAAAAA
Found at i:96273452 original size:10 final size:9
Alignment explanation
Indices: 96273367--96273458 Score: 55
Period size: 9 Copynumber: 9.3 Consensus size: 9
96273357 ATGTCTTTCA
96273367 AAATAAAAT
1 AAATAAAAT
96273376 -AATAAAAATT
1 AAAT-AAAA-T
96273386 GAAATGAAAAT
1 -AAAT-AAAAT
96273397 AAAAATCAAAAT
1 --AAAT-AAAAT
96273409 AAA-AATAA-
1 AAATAA-AAT
96273417 AAATAAAAT
1 AAATAAAAT
*
96273426 AAAGAAAAT
1 AAATAAAAT
96273435 AAAAATAAGAAT
1 --AAATAA-AAT
96273447 AAATAAAAT
1 AAATAAAAT
96273456 AAA
1 AAA
96273459 ATAGGAGGAT
Statistics
Matches: 67, Mismatches: 5, Indels: 22
0.71 0.05 0.23
Matches are distributed among these distances:
8 10 0.15
9 22 0.33
10 10 0.15
11 6 0.09
12 19 0.28
ACGTcount: A:0.76, C:0.01, G:0.04, T:0.18
Consensus pattern (9 bp):
AAATAAAAT
Found at i:96273459 original size:26 final size:26
Alignment explanation
Indices: 96273367--96273461 Score: 88
Period size: 26 Copynumber: 3.6 Consensus size: 26
96273357 ATGTCTTTCA
**
96273367 AAATAAAAT--AATAAAAATTGAAAT
1 AAATAAAATAAAATAAAAATAAAAAT
96273391 GAAAATAAAAATCAAAATAAAAATAAAAAT
1 --AAAT-AAAAT-AAAATAAAAATAAAAAT
* *
96273421 AAA-ATAAAGAAAATAAAAATAAGAAT
1 AAATA-AAATAAAATAAAAATAAAAAT
96273447 AAATAAAATAAAATA
1 AAATAAAATAAAATA
96273462 GGAGGATTCA
Statistics
Matches: 58, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
26 33 0.57
27 9 0.16
28 3 0.05
30 13 0.22
ACGTcount: A:0.76, C:0.01, G:0.04, T:0.19
Consensus pattern (26 bp):
AAATAAAATAAAATAAAAATAAAAAT
Found at i:96288758 original size:25 final size:25
Alignment explanation
Indices: 96288724--96288773 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
96288714 GGCAGGGGAG
96288724 CCTGAAATCACTCTGACTCTGTCTC
1 CCTGAAATCACTCTGACTCTGTCTC
96288749 CCTGAAATCACTCTGACTCTGTCTC
1 CCTGAAATCACTCTGACTCTGTCTC
96288774 ACAAAAGTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.20, C:0.36, G:0.12, T:0.32
Consensus pattern (25 bp):
CCTGAAATCACTCTGACTCTGTCTC
Found at i:96290779 original size:27 final size:27
Alignment explanation
Indices: 96290735--96290901 Score: 117
Period size: 27 Copynumber: 6.3 Consensus size: 27
96290725 CTTGACAAAT
* *
96290735 CTTCCACAT-A-ACAGTCCTGGTGGAC
1 CTTCCACATAAGATAGTCCTGATGGAC
* * *
96290760 CTTCCATATAGGATAGTCCTAATGGAC
1 CTTCCACATAAGATAGTCCTGATGGAC
*
96290787 CTTTCACATAAGATAGTCCT-A-GCGAAC
1 CTTCCACATAAGATAGTCCTGATG-G-AC
* *
96290814 CTTCCACATAATATAGTCTTGATGGAC
1 CTTCCACATAAGATAGTCCTGATGGAC
* * * **
96290841 CCTCGACATATGATAGTATTGATGGAC
1 CTTCCACATAAGATAGTCCTGATGGAC
* * * * **
96290868 CTTCCATACATGATAGTCCTAACAGAC
1 CTTCCACATAAGATAGTCCTGATGGAC
96290895 CTTCCAC
1 CTTCCAC
96290902 TTATATGGTA
Statistics
Matches: 110, Mismatches: 26, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
25 9 0.08
26 2 0.02
27 96 0.87
28 2 0.02
29 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (27 bp):
CTTCCACATAAGATAGTCCTGATGGAC
Found at i:96292635 original size:46 final size:46
Alignment explanation
Indices: 96292490--96292753 Score: 211
Period size: 46 Copynumber: 5.7 Consensus size: 46
96292480 AGGGTATAAT
* * * * *
96292490 GCCGATGCCATGTTCCAGACATGGTCTTACACTGTCTTTCATATTAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TTCATCTGAG
* * *
96292537 GTCGATGCCATGTCCCAGACATGGTCTTACACTGAC-ACATCATGCA-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTCATC-TG-AG
*
96292583 GCCGATG-CATGTCCCAGACAT-GTCTTAGACTGGCTTACATCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTT-CATCT-GAG
* * * * *
96292629 GTCGATG-CATGTCCCAGACAT-ATCTTACACTAGCTCTCATCTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TCATCT-GAG
* * * * *
96292675 GCTGATGTCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TCAT-CTGAG
*
96292723 GCCGATG-CATGTCCTAGACAT-GTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
96292754 AGCATACAAA
Statistics
Matches: 182, Mismatches: 25, Indels: 21
0.80 0.11 0.09
Matches are distributed among these distances:
44 11 0.06
45 19 0.10
46 65 0.36
47 62 0.34
48 24 0.13
49 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (46 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTCATCTGAG
Found at i:96296404 original size:43 final size:43
Alignment explanation
Indices: 96296356--96296453 Score: 128
Period size: 43 Copynumber: 2.3 Consensus size: 43
96296346 TGGACGGGAC
* * * *
96296356 ACATGCCTGTGTGGCTAGGCTGTGTGTCTCAAACA-G-CCAAGGG
1 ACATGCCCGTGTGGCCAGGCCGAGTGTCTC--ACATGACCAAGGG
96296399 ACATGCCCGTGTGGCCAGGCCGAGTGTCTCACATGACCAAGGG
1 ACATGCCCGTGTGGCCAGGCCGAGTGTCTCACATGACCAAGGG
96296442 ACATGCCCGTGT
1 ACATGCCCGTGT
96296454 CTCACACCAT
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
41 3 0.06
42 1 0.02
43 45 0.92
ACGTcount: A:0.20, C:0.28, G:0.32, T:0.20
Consensus pattern (43 bp):
ACATGCCCGTGTGGCCAGGCCGAGTGTCTCACATGACCAAGGG
Found at i:96297683 original size:13 final size:13
Alignment explanation
Indices: 96297661--96297693 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
96297651 AAGGGTTTGT
96297661 TTAT-TAAACTAA
1 TTATCTAAACTAA
96297673 TTATCTAAACTAA
1 TTATCTAAACTAA
*
96297686 TTAACTAA
1 TTATCTAA
96297694 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:96300467 original size:19 final size:19
Alignment explanation
Indices: 96300429--96300467 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
96300419 GAACAAGTTA
**
96300429 AATATTTATCTTAATGTTC
1 AATATTTATCTTAAAATTC
96300448 AATATTTATCTTAAAATTC
1 AATATTTATCTTAAAATTC
96300467 A
1 A
96300468 GAAAATTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.10, G:0.03, T:0.49
Consensus pattern (19 bp):
AATATTTATCTTAAAATTC
Found at i:96302679 original size:10 final size:10
Alignment explanation
Indices: 96302662--96302698 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
96302652 AACTTAATAA
96302662 AAGA-AAAAT
1 AAGATAAAAT
*
96302671 AAAATAAAAT
1 AAGATAAAAT
96302681 AAGATAAAAT
1 AAGATAAAAT
96302691 AAGATAAA
1 AAGATAAA
96302699 TAATTGAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
9 3 0.12
10 22 0.88
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (10 bp):
AAGATAAAAT
Found at i:96302687 original size:15 final size:14
Alignment explanation
Indices: 96302667--96302701 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
96302657 AATAAAAGAA
96302667 AAATAAAATAAAAT
1 AAATAAAATAAAAT
*
96302681 AAGATAAAATAAGAT
1 AA-ATAAAATAAAAT
96302696 AAATAA
1 AAATAA
96302702 TTGAATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.20
Consensus pattern (14 bp):
AAATAAAATAAAAT
Found at i:96308802 original size:30 final size:30
Alignment explanation
Indices: 96308768--96308824 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
96308758 TTCCCGAGCC
96308768 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
96308798 TAGGGGTAAAATTGTAATTTTGCAAAA
1 TAGGGGCAAAAGTGTAAATATGCAAAA
96308825 TTTTGAGTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.42, C:0.05, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:96320004 original size:25 final size:25
Alignment explanation
Indices: 96319975--96320022 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
96319965 TTATAATATG
** *
96319975 AAAATAACTGTTTTGCCCCTAGGTA
1 AAAATAACCATTTTACCCCTAGGTA
*
96320000 AAAATGACCATTTTACCCCTAGG
1 AAAATAACCATTTTACCCCTAGG
96320023 GTTTAATTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (25 bp):
AAAATAACCATTTTACCCCTAGGTA
Found at i:96320200 original size:26 final size:25
Alignment explanation
Indices: 96320155--96320226 Score: 74
Period size: 26 Copynumber: 2.8 Consensus size: 25
96320145 GAGGAAGTGC
* *
96320155 AAAAGGGC-TATGCCCCAGTTTACCG
1 AAAAGGGCTTTTG-CCCAGTTTACCA
**
96320180 AAAAGGGCTTTTGCCCTAGTTTATTA
1 AAAAGGGCTTTTGCCC-AGTTTACCA
96320206 AAAAGGGCTTTTGGCCCAGTT
1 AAAAGGGCTTTT-GCCCAGTT
96320227 ACTAAAAGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
25 11 0.28
26 25 0.62
27 4 0.10
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (25 bp):
AAAAGGGCTTTTGCCCAGTTTACCA
Found at i:96320208 original size:25 final size:25
Alignment explanation
Indices: 96320180--96320233 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 25
96320170 CAGTTTACCG
*
96320180 AAAAGGGCTTTT-GCCCTAGTTTATTA
1 AAAAGGGCTTTTGGCCC-AG-TTACTA
96320206 AAAAGGGCTTTTGGCCCAGTTACTA
1 AAAAGGGCTTTTGGCCCAGTTACTA
96320231 AAA
1 AAA
96320234 GAGGCTAGGC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 8 0.31
26 14 0.54
27 4 0.15
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.31
Consensus pattern (25 bp):
AAAAGGGCTTTTGGCCCAGTTACTA
Found at i:96320239 original size:25 final size:26
Alignment explanation
Indices: 96320165--96320239 Score: 68
Period size: 26 Copynumber: 2.9 Consensus size: 26
96320155 AAAAGGGCTA
* *
96320165 TGCCCCAGTTTACCGAAAAG-GGCTTT
1 TGCCCTAGTTTA-CTAAAAGAGGCTTT
*
96320191 TGCCCTAGTTTATTAAAA-AGGGCTTT
1 TGCCCTAGTTTACTAAAAGA-GGCTTT
96320217 TGGCCC-AG-TTACTAAAAGAGGCT
1 T-GCCCTAGTTTACTAAAAGAGGCT
96320240 AGGCCTCCAG
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
25 16 0.39
26 21 0.51
27 4 0.10
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
TGCCCTAGTTTACTAAAAGAGGCTTT
Found at i:96320485 original size:31 final size:31
Alignment explanation
Indices: 96320442--96320543 Score: 152
Period size: 31 Copynumber: 3.3 Consensus size: 31
96320432 CATATTGTTA
* *
96320442 CAGTAATATGAATAATGAAAAGGCTTTGGCC
1 CAGTGATATGAATAATGAAAAGGCTTCGGCC
*
96320473 CAGTGATATGAATAATGAAAAGGCTTCAGCC
1 CAGTGATATGAATAATGAAAAGGCTTCGGCC
* *
96320504 TAGTGATATGAATAATGTAAAGGCTTCGGCC
1 CAGTGATATGAATAATGAAAAGGCTTCGGCC
96320535 CAGT-ATATG
1 CAGTGATATG
96320544 CTGAGATTGA
Statistics
Matches: 64, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
30 5 0.08
31 59 0.92
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (31 bp):
CAGTGATATGAATAATGAAAAGGCTTCGGCC
Found at i:96328953 original size:27 final size:27
Alignment explanation
Indices: 96328915--96329093 Score: 166
Period size: 27 Copynumber: 6.6 Consensus size: 27
96328905 TAAATTGTAC
96328915 AGCACTAAGTGTGCGGTTTGACTATGT
1 AGCACTAAGTGTGCGGTTTGACTATGT
* *** *
96328942 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGGTTTGACTATGT
** *
96328968 ATGCACTAAGTGTGCGAATTGA-TCATGC
1 A-GCACTAAGTGTGCGGTTTGACT-ATGT
*
96328996 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCG-GTTTGACTATGT
* * *
96329024 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGGTTTGACTATGT
* *
96329051 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCG-GTTTGACTATGT
*
96329078 AGCACTGAGTGTGCGG
1 AGCACTAAGTGTGCGG
96329094 GCTCAATATA
Statistics
Matches: 127, Mismatches: 19, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
26 2 0.02
27 103 0.81
28 21 0.17
29 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGTTTGACTATGT
Found at i:96329083 original size:82 final size:81
Alignment explanation
Indices: 96328912--96329093 Score: 240
Period size: 82 Copynumber: 2.2 Consensus size: 81
96328902 GATTAAATTG
* *
96328912 TACAGCACTAAGTGTGCGGTTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
96328977 GTGTGCGAATTGATCA
66 GTGTGCGAATTGATCA
* * ** *
96328993 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCG-GTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* *
96329057 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGATCA
* *
96329075 TATAGCACTGAGTGTGCGG
1 TACAGCACTAAGTGTGCGG
96329094 GCTCAATATA
Statistics
Matches: 86, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
81 18 0.21
82 68 0.79
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGATCA
Found at i:96337135 original size:27 final size:27
Alignment explanation
Indices: 96337101--96337279 Score: 175
Period size: 27 Copynumber: 6.6 Consensus size: 27
96337091 AAATTGTAAC
*
96337101 AGCACTAAGTGTGCGGTTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
96337128 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
96337154 ATGCACTAAGTGTGCGAATTGA-TCATGC
1 A-GCACTAAGTGTGCGATTTGACT-ATGT
*
96337182 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
96337210 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
96337237 AGCACTAAGTGGTGCGAGTTGATTA-GAT
1 AGCACTAAGT-GTGCGATTTGACTATG-T
*
96337265 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
96337280 GGCTCAATAT
Statistics
Matches: 130, Mismatches: 15, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
26 1 0.01
27 83 0.64
28 45 0.35
29 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:96337225 original size:55 final size:54
Alignment explanation
Indices: 96337101--96337279 Score: 184
Period size: 55 Copynumber: 3.3 Consensus size: 54
96337091 AAATTGTAAC
* * **
96337101 AGCACTAAGTGTGCGGTTTGA-CTATGTTGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATC-ATGTAGCACTAAGTGTGCGAGTTGAATATGT
* ** *
96337154 ATGCACTAAGTGTGCGAATTGATCATGCGGCACTAAGTGTGCGAGTTTGACTATGT
1 A-GCACTAAGTGTGCGATTTGATCATGTAGCACTAAGTGTGCGAG-TTGAATATGT
* * *
96337210 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGGTGCGAGTTGATTA-GAT
1 AGCACTAAGTGTGCGATTTGATCATGTAGCACTAAGT-GTGCGAGTTGAATATG-T
*
96337265 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
96337280 GGCTCAATAT
Statistics
Matches: 106, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
53 1 0.01
54 37 0.35
55 60 0.57
56 8 0.08
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.30
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTTGATCATGTAGCACTAAGTGTGCGAGTTGAATATGT
Found at i:96337242 original size:82 final size:82
Alignment explanation
Indices: 96337102--96337259 Score: 230
Period size: 82 Copynumber: 1.9 Consensus size: 82
96337092 AATTGTAACA
* *
96337102 GCACTAAGTGTGCGGTTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGT-G
1 GCACTAAGTGTGCGGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGG
96337166 TGCGAATTGATCATGCG
66 TGCGAATTGATCATGCG
** *
96337183 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCG-GTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGT
*
96337247 GGTGCGAGTTGAT
64 GGTGCGAATTGAT
96337260 TAGATAGCAC
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
81 15 0.22
82 42 0.62
83 11 0.16
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (82 bp):
GCACTAAGTGTGCGGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGG
TGCGAATTGATCATGCG
Found at i:96339044 original size:26 final size:26
Alignment explanation
Indices: 96338983--96339158 Score: 135
Period size: 26 Copynumber: 6.6 Consensus size: 26
96338973 GTATATGAGC
* * *
96338983 CGCACACTCAGTGCGTATATAATCAACT
1 CGCACACTTAGTGC-TACAT-ATCAAAT
*
96339011 CGCACACTTAGTGCTACGTATCAAAT
1 CGCACACTTAGTGCTACATATCAAAT
*
96339037 CGCCCACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATA-TCAAA-T
** *
96339065 CGCACAC-TAGTGCCGCATGATCAATT
1 CGCACACTTAGTGCTACAT-ATCAAAT
**
96339091 CGCA-ACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATA-TCAAAT
* *
96339117 CGCACAC-TAGTGCAACATAGTCCAAAC
1 CGCACACTTAGTGCTACATA-T-CAAAT
96339144 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
96339159 GTTACAATTT
Statistics
Matches: 121, Mismatches: 17, Indels: 20
0.77 0.11 0.13
Matches are distributed among these distances:
25 3 0.02
26 58 0.48
27 33 0.27
28 27 0.22
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.26
Consensus pattern (26 bp):
CGCACACTTAGTGCTACATATCAAAT
Found at i:96339088 original size:54 final size:51
Alignment explanation
Indices: 96339005--96339157 Score: 137
Period size: 53 Copynumber: 2.9 Consensus size: 51
96338995 GCGTATATAA
* * *
96339005 TCAACTCGCACACTTAGTGCTACGTATCAAATCGCCCACTTAGTGC-TACATAG
1 TCAACTCGCACAC-TAGTGCCACATATCAAATCG-CAACTTAGTGCAT-CATAG
* * *
96339058 TCAAACTCGCACACTAGTGCCGCATGATCAATTCGCAACTTAGTGCATCATAT
1 TC-AACTCGCACACTAGTGCCACAT-ATCAAATCGCAACTTAGTGCATCATAG
** * *
96339111 TCATTTCGCACACTAGTGCAACATAGTCCAAACCGCACACTTAGTGC
1 TCAACTCGCACACTAGTGCCACATA-T-CAAATCGCA-ACTTAGTGC
96339158 TGTTACAATT
Statistics
Matches: 82, Mismatches: 12, Indels: 11
0.78 0.11 0.10
Matches are distributed among these distances:
51 1 0.01
52 19 0.23
53 33 0.40
54 29 0.35
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (51 bp):
TCAACTCGCACACTAGTGCCACATATCAAATCGCAACTTAGTGCATCATAG
Found at i:96347152 original size:27 final size:27
Alignment explanation
Indices: 96347089--96347269 Score: 150
Period size: 27 Copynumber: 6.6 Consensus size: 27
96347079 ATATTGAGCC
* * *
96347089 CGCACACTCAGTGCTATATAA-CATCACT
1 CGCACACTTAGTGCTACATAATCA--AAT
*
96347117 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAAAT
* *
96347144 CGCACACTTAGTGCTACATAGTAAAACT
1 CGCACACTTAGTGCTACATAATCAAA-T
** * *
96347172 CGCACACTTAGTGCCGCATGATCAATT
1 CGCACACTTAGTGCTACATAATCAAAT
* **
96347199 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAAAT
* * *
96347226 CGCACACTTAGTGCCAACATAGTCAAAAC
1 CGCACACTTAGTG-CTACATAATC-AAAT
96347255 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
96347270 GTACAATTTA
Statistics
Matches: 125, Mismatches: 22, Indels: 12
0.79 0.14 0.08
Matches are distributed among these distances:
27 61 0.49
28 47 0.38
29 17 0.14
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAAAT
Found at i:96347173 original size:55 final size:55
Alignment explanation
Indices: 96347089--96347269 Score: 163
Period size: 55 Copynumber: 3.3 Consensus size: 55
96347079 ATATTGAGCC
* * * *
96347089 CGCACACTCAGTGCTAT-ATA-ACATCACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTATCATATA-A-AACTCGCACACTTAGTGCAACATAATCAAAT
** * *
96347144 CGCACACTTAGTGCTA-CATAGTAAAACTCGCACACTTAGTGCCGCATGATCAATT
1 CGCACACTTAGTGCTATCATA-TAAAACTCGCACACTTAGTGCAACATAATCAAAT
** ** * *
96347199 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCCAACATAGTCAAAAC
1 CGCACACTTAGTGCTATCATATAAAACTCGCACACTTAGTG-CAACATAATC-AAAT
96347255 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
96347270 GTACAATTTA
Statistics
Matches: 102, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
54 17 0.17
55 67 0.66
56 17 0.17
57 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATAAAACTCGCACACTTAGTGCAACATAATCAAAT
Found at i:96347210 original size:82 final size:83
Alignment explanation
Indices: 96347116--96347268 Score: 222
Period size: 82 Copynumber: 1.9 Consensus size: 83
96347106 ATAACATCAC
* *
96347116 TCGCACACTTAGTGC-TACGTAATCAAATCGCACACTTAGTG-CTACATAGT-AAAACTCGCACA
1 TCGCACACTTAGTGCAT-CATAATCAAATCGCACACTTAGTGCCAACATAGTCAAAAC-CGCACA
96347178 CTTAGTGCCGCATGATCAAT
64 CTTAGTGCCGCATGATCAAT
* **
96347198 TCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCCAACATAGTCAAAACCGCACACT
1 TCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCCAACATAGTCAAAACCGCACACT
96347263 TAGTGC
66 TAGTGC
96347269 TGTACAATTT
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
82 35 0.56
83 23 0.37
84 5 0.08
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (83 bp):
TCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCCAACATAGTCAAAACCGCACACT
TAGTGCCGCATGATCAAT
Found at i:96362269 original size:40 final size:39
Alignment explanation
Indices: 96362081--96362270 Score: 172
Period size: 39 Copynumber: 4.9 Consensus size: 39
96362071 AGCATTTGAA
* * *
96362081 TGATAT-CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-
1 TGATATACCGGGCTAAGACCCGAAGGCATTTGTGCGAGT
* * * * * * *
96362118 TGATTTTATCTGGCTAAGTCCCGAATGCATTTATGCTAG-
1 TGA-TATACCGGGCTAAGACCCGAAGGCATTTGTGCGAGT
* *
96362157 TGATTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGATT
1 TGATATA-CCGGGCTAAGACCCGAAGGCATTTGTGCGAGT
* *
96362197 TGATATATC-GGCTAAGACCTGAAGGCATTTGTGCGAGT
1 TGATATACCGGGCTAAGACCCGAAGGCATTTGTGCGAGT
* * *
96362235 TGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TGATATA-CCGGGCTAAGACCCGAAGGCATTTGTGC
96362271 TTGTGGTTAT
Statistics
Matches: 127, Mismatches: 20, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
37 3 0.02
38 39 0.31
39 57 0.45
40 28 0.22
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.29
Consensus pattern (39 bp):
TGATATACCGGGCTAAGACCCGAAGGCATTTGTGCGAGT
Found at i:96362282 original size:78 final size:78
Alignment explanation
Indices: 96362087--96362283 Score: 202
Period size: 78 Copynumber: 2.5 Consensus size: 78
96362077 TGAATGATAT
* * * * * * *
96362087 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCTGGCTAAGTCCCGAATGCATTTAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTTATATCTGGCTAAGACCCGAAGGCATTTAT
* * *
96362152 GCTAGTGATTTAT
66 GCGAGTGATATAC
* *
96362165 CCGGGCTAAGACCCGAAGGCATTTGTGCGATT-T-GATATATC-GGCTAAGACCTGAAGGCATTT
1 CCGGGCTAAGACCCGAAGGCATTTGTGC--TTGTGGTTATATCTGGCTAAGACCCGAAGGCATTT
* *
96362227 GTGCGAGTTGCTATAC
64 ATGCGAG-TGATATAC
* *
96362243 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTTATATC
96362284 CAGCTAAATT
Statistics
Matches: 97, Mismatches: 17, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
76 2 0.02
77 24 0.25
78 69 0.71
79 1 0.01
80 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.30
Consensus pattern (78 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTTATATCTGGCTAAGACCCGAAGGCATTTAT
GCGAGTGATATAC
Found at i:96364676 original size:40 final size:40
Alignment explanation
Indices: 96364533--96364667 Score: 270
Period size: 40 Copynumber: 3.4 Consensus size: 40
96364523 AGAGTTATAT
96364533 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
96364573 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
96364613 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
96364653 ATATATCCGGGCTAA
1 ATATATCCGGGCTAA
96364668 ACCTCGAAGG
Statistics
Matches: 95, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 95 1.00
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
Found at i:96364676 original size:80 final size:79
Alignment explanation
Indices: 96364533--96364687 Score: 267
Period size: 80 Copynumber: 1.9 Consensus size: 79
96364523 AGAGTTATAT
**
96364533 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCGAAGA
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAACCTCCGAAG-
96364598 GCATTCGTGCTAGTG
65 GCATTCGTGCTAGTG
96364613 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAACCT-CGAAG
1 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCT-AACCTCCGAAG
96364677 GCATTCGTGCT
65 GCATTCGTGCT
96364688 GGAATTATGA
Statistics
Matches: 72, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
79 11 0.15
80 58 0.81
81 3 0.04
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (79 bp):
ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAACCTCCGAAGG
CATTCGTGCTAGTG
Found at i:96364762 original size:29 final size:28
Alignment explanation
Indices: 96364696--96365026 Score: 197
Period size: 28 Copynumber: 11.6 Consensus size: 28
96364686 CTGGAATTAT
* * * * *
96364696 GAGGCACTGTGTGTGCAAGTTCTTCAACC
1 GAGGCACTATGTGTGCGAGATCGT-AATC
* * *
96364725 GA-GCACTATGTGTGCCAGATCAGTAGTG
1 GAGGCACTATGTGTGCGAGATC-GTAATC
* * *
96364753 GAGGCACTATGTGTGCGAGTTCTTCAACC
1 GAGGCACTATGTGTGCGAGATCGT-AATC
* * *
96364782 GA-GCACTATGTGTGCCAGATCAGTAGTG
1 GAGGCACTATGTGTGCGAGATC-GTAATC
* *
96364810 GAGGCACTATGTGTGCGAGTTCTTCAATC
1 GAGGCACTATGTGTGCGAGATCGT-AATC
* *
96364839 GA-GCACTATGTGTGCGAGATTGGTAATT
1 GAGGCACTATGTGTGCGAGA-TCGTAATC
* * * * *
96364867 GAGGCACCATGTGTGTGAGTTCTTCAAAC
1 GAGGCACTATGTGTGCGAGATCGT-AATC
* * *
96364896 GA-GCACTATGTGTGCCAGATCAGTAGTG
1 GAGGCACTATGTGTGCGAGATC-GTAATC
* * *
96364924 GAGGCACTATGTGTGCTAGTTCTTCAATC
1 GAGGCACTATGTGTGCGAGATCGT-AATC
* *
96364953 GA-GCACTATGTGTGCGAGATTGGTAATT
1 GAGGCACTATGTGTGCGAGA-TCGTAATC
* * * *
96364981 AAGGCACCATGTGTGCGAGTTCTTTAATC
1 GAGGCACTATGTGTGCGAGATC-GTAATC
*
96365010 GA-GCGCTATGTGTGCGA
1 GAGGCACTATGTGTGCGA
96365027 AATCAGTCAG
Statistics
Matches: 225, Mismatches: 62, Indels: 31
0.71 0.19 0.10
Matches are distributed among these distances:
28 116 0.52
29 109 0.48
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.29
Consensus pattern (28 bp):
GAGGCACTATGTGTGCGAGATCGTAATC
Found at i:96364784 original size:57 final size:57
Alignment explanation
Indices: 96364696--96365039 Score: 463
Period size: 57 Copynumber: 6.0 Consensus size: 57
96364686 CTGGAATTAT
* * *
96364696 GAGGCACTGTGTGTGCAAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGTG
1 GAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCCAGATCAGTAGTG
*
96364753 GAGGCACTATGTGTGCGAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGTG
1 GAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCCAGATCAGTAGTG
* ** * *
96364810 GAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAATT
1 GAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCCAGATCAGTAGTG
* * *
96364867 GAGGCACCATGTGTGTGAGTTCTTCAAACGAGCACTATGTGTGCCAGATCAGTAGTG
1 GAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCCAGATCAGTAGTG
* * ** * *
96364924 GAGGCACTATGTGTGCTAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAATT
1 GAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCCAGATCAGTAGTG
* * * * * *
96364981 AAGGCACCATGTGTGCGAGTTCTTTAATCGAGCGCTATGTGTGCGAAATCAGTCAGTG
1 GAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCCAGATCAGT-AGTG
96365039 G
1 G
96365040 GCACTGTGTA
Statistics
Matches: 250, Mismatches: 36, Indels: 1
0.87 0.13 0.00
Matches are distributed among these distances:
57 248 0.99
58 2 0.01
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (57 bp):
GAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCCAGATCAGTAGTG
Found at i:96364899 original size:114 final size:114
Alignment explanation
Indices: 96364696--96365039 Score: 517
Period size: 114 Copynumber: 3.0 Consensus size: 114
96364686 CTGGAATTAT
* * * ** * * *
96364696 GAGGCACTGTGTGTGCAAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGTGGAGGCACT
1 GAGGCACTATGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAATTGAGGCACC
*
96364761 ATGTGTGCGAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGTG
66 ATGTGTGCGAGTTCTTCAAACGAGCACTATGTGTGCCAGATCAGTAGTG
*
96364810 GAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAATTGAGGCACC
1 GAGGCACTATGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAATTGAGGCACC
*
96364875 ATGTGTGTGAGTTCTTCAAACGAGCACTATGTGTGCCAGATCAGTAGTG
66 ATGTGTGCGAGTTCTTCAAACGAGCACTATGTGTGCCAGATCAGTAGTG
* *
96364924 GAGGCACTATGTGTGCTAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAATTAAGGCACC
1 GAGGCACTATGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAATTGAGGCACC
* * * * *
96364989 ATGTGTGCGAGTTCTTTAATCGAGCGCTATGTGTGCGAAATCAGTCAGTG
66 ATGTGTGCGAGTTCTTCAAACGAGCACTATGTGTGCCAGATCAGT-AGTG
96365039 G
1 G
96365040 GCACTGTGTA
Statistics
Matches: 210, Mismatches: 19, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
114 205 0.98
115 5 0.02
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (114 bp):
GAGGCACTATGTGTGCAAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAATTGAGGCACC
ATGTGTGCGAGTTCTTCAAACGAGCACTATGTGTGCCAGATCAGTAGTG
Found at i:96364995 original size:171 final size:170
Alignment explanation
Indices: 96364695--96365026 Score: 522
Period size: 171 Copynumber: 1.9 Consensus size: 170
96364685 GCTGGAATTA
*
96364695 TGAGGCACTGTGTGTGCAAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGTGGAGGCAC
1 TGAGGCACTGTGTGTG-AAGTTCTTCAAACGAGCACTATGTGTGCCAGATCAGTAGTGGAGGCAC
* * *
96364760 TATGTGTGCGAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGTGGAGGCACTATGTGTG
65 TATGTGTGCGAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAATGAAGGCACCATGTGTG
96364825 CGAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAAT
130 CGAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAAT
96364866 TGAGGCACCATGTGTGTG-AGTTCTTCAAACGAGCACTATGTGTGCCAGATCAGTAGTGGAGGCA
1 TGAGGCA-C-TGTGTGTGAAGTTCTTCAAACGAGCACTATGTGTGCCAGATCAGTAGTGGAGGCA
* * * ** *
96364930 CTATGTGTGCTAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAATTAAGGCACCATGTGT
64 CTATGTGTGCGAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAATGAAGGCACCATGTGT
* *
96364995 GCGAGTTCTTTAATCGAGCGCTATGTGTGCGA
129 GCGAGTTCTTCAATCGAGCACTATGTGTGCGA
96365027 AATCAGTCAG
Statistics
Matches: 147, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
171 138 0.94
172 1 0.01
173 8 0.05
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.29
Consensus pattern (170 bp):
TGAGGCACTGTGTGTGAAGTTCTTCAAACGAGCACTATGTGTGCCAGATCAGTAGTGGAGGCACT
ATGTGTGCGAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAATGAAGGCACCATGTGTGC
GAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAAT
Found at i:96368782 original size:22 final size:22
Alignment explanation
Indices: 96368755--96368828 Score: 62
Period size: 22 Copynumber: 3.2 Consensus size: 22
96368745 CATGCATATG
96368755 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
96368777 TGTGATGAGTG-TGAACAT-GCAAATA
1 TGTGATAAG-GCCG-A-ATGGC-CA-A
96368802 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
96368824 TGTGA
1 TGTGA
96368829 CGAATGTGAA
Statistics
Matches: 39, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
22 15 0.38
23 7 0.18
24 7 0.18
25 10 0.26
ACGTcount: A:0.32, C:0.14, G:0.31, T:0.23
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:96368784 original size:47 final size:47
Alignment explanation
Indices: 96368733--96368867 Score: 216
Period size: 47 Copynumber: 2.9 Consensus size: 47
96368723 GATTCTATGA
*
96368733 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
96368780 GATGAGTGTGAACATGCAAATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* **
96368827 GACGAATGTGAACATGCATATATGTGATAAGGTAGAATGGC
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
96368868 TAGTGCAAAA
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 80 1.00
ACGTcount: A:0.34, C:0.12, G:0.30, T:0.24
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:96369085 original size:37 final size:37
Alignment explanation
Indices: 96368977--96369085 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
96368967 GGAAATAGAT
*
96368977 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
96369014 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
96369051 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
96369086 CATCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:96375335 original size:15 final size:15
Alignment explanation
Indices: 96375315--96375343 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
96375305 TTTAGGATAA
96375315 ATTTTGATTGATATG
1 ATTTTGATTGATATG
96375330 ATTTTGATTGATAT
1 ATTTTGATTGATAT
96375344 ATCTTGAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.17, T:0.55
Consensus pattern (15 bp):
ATTTTGATTGATATG
Found at i:96379105 original size:46 final size:45
Alignment explanation
Indices: 96378985--96379112 Score: 157
Period size: 48 Copynumber: 2.8 Consensus size: 45
96378975 ACCACAACAT
* *
96378985 GAGAGCTAGTGTAAGACATGTCTGGGACATGTATCGGCCTTGAGA
1 GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGA
* * * * *
96379030 TATTTTAGCCAGTGTAAGACATGTTTGGGACATGCATCTGCATTGAGA
1 GA---GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGA
96379078 CGAGAGCTAGTGTAAGACATGTCTGGGACATGCAT
1 -GAGAGCTAGTGTAAGACATGTCTGGGACATGCAT
96379113 TGGCCTTGCG
Statistics
Matches: 68, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
45 1 0.01
46 29 0.43
48 37 0.54
49 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (45 bp):
GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGA
Found at i:96379142 original size:94 final size:94
Alignment explanation
Indices: 96378985--96379157 Score: 238
Period size: 94 Copynumber: 1.8 Consensus size: 94
96378975 ACCACAACAT
* *** * *
96378985 GAGAGCTAGTGTAAGACATGTCTGGGACATGTATCGGCCTTGAGATATTTTAGCCAGTGTAAGAC
1 GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACAAGCCACTATAAGAC
* *
96379050 ATGTTTGGGACATGCATCTGCATTGAGAC
66 ATGTCTAGGACATGCATCTGCATTGAGAC
* * *
96379079 GAGAGCTAGTGTAAGACATGTCTGGGACATGCATTGGCCTTGCGATATACAAGCTACTATAAGAC
1 GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACAAGCCACTATAAGAC
*
96379144 CTGTCTAGGACATG
66 ATGTCTAGGACATG
96379158 GCATTAGCTT
Statistics
Matches: 67, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
94 67 1.00
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (94 bp):
GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACAAGCCACTATAAGAC
ATGTCTAGGACATGCATCTGCATTGAGAC
Found at i:96380077 original size:30 final size:30
Alignment explanation
Indices: 96380038--96380106 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
96380028 CACGGGCAGA
96380038 GACACGGCCGTGTGTCTCAGCCGTGTAGAG
1 GACACGGCCGTGTGTCTCAGCCGTGTAGAG
*
96380068 GACATGGCCGTGTGTCTCAGCCGTGTAGAG
1 GACACGGCCGTGTGTCTCAGCCGTGTAGAG
96380098 GACACGGCC
1 GACACGGCC
96380107 TATGGCCACG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.17, C:0.28, G:0.36, T:0.19
Consensus pattern (30 bp):
GACACGGCCGTGTGTCTCAGCCGTGTAGAG
Found at i:96382121 original size:18 final size:18
Alignment explanation
Indices: 96382100--96382137 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
96382090 AAGAAACATT
*
96382100 ATCATAACTAGAATCAGA
1 ATCATAACCAGAATCAGA
*
96382118 ATCATAACCAGAATGAGA
1 ATCATAACCAGAATCAGA
96382136 AT
1 AT
96382138 TAGGTAACAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.16, G:0.13, T:0.21
Consensus pattern (18 bp):
ATCATAACCAGAATCAGA
Found at i:96382323 original size:27 final size:26
Alignment explanation
Indices: 96382281--96382332 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
96382271 GTGAGGCTGC
*
96382281 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
96382307 CAGATATATGTGGCGAAGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
96382333 TTGCAGCGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:96382373 original size:67 final size:67
Alignment explanation
Indices: 96382265--96382418 Score: 290
Period size: 67 Copynumber: 2.3 Consensus size: 67
96382255 CACCATAGAA
*
96382265 ATTGCAGTGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
96382330 AG
66 AG
96382332 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
96382397 AG
66 AG
*
96382399 ATTGCAGCGAGGCTACCAGA
1 ATTGCAGCGAGGCTGCCAGA
96382419 ACACTTCCTC
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
67 85 1.00
ACGTcount: A:0.31, C:0.22, G:0.29, T:0.18
Consensus pattern (67 bp):
ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
AG
Found at i:96382390 original size:27 final size:26
Alignment explanation
Indices: 96382348--96382399 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
96382338 GCGAGGCTGC
*
96382348 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
96382374 CAGATATATGTGGCGAAGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
96382400 TTGCAGCGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:96382774 original size:168 final size:168
Alignment explanation
Indices: 96382496--96382835 Score: 680
Period size: 168 Copynumber: 2.0 Consensus size: 168
96382486 AGAATCAGAA
96382496 TATCATGTCCATATTTGAATCAAACAATCACAGTCAAATCATTCATATCACCAACATATATTCAC
1 TATCATGTCCATATTTGAATCAAACAATCACAGTCAAATCATTCATATCACCAACATATATTCAC
96382561 AATCAAATCCGTCAACCACACAGTCCAAGTCAGCCACTTGCCCACAAGGGCAAAACAGTCATTTA
66 AATCAAATCCGTCAACCACACAGTCCAAGTCAGCCACTTGCCCACAAGGGCAAAACAGTCATTTA
96382626 ACACCTTAGGGGCAAAATGGTAATTTTACCCCACAAGG
131 ACACCTTAGGGGCAAAATGGTAATTTTACCCCACAAGG
96382664 TATCATGTCCATATTTGAATCAAACAATCACAGTCAAATCATTCATATCACCAACATATATTCAC
1 TATCATGTCCATATTTGAATCAAACAATCACAGTCAAATCATTCATATCACCAACATATATTCAC
96382729 AATCAAATCCGTCAACCACACAGTCCAAGTCAGCCACTTGCCCACAAGGGCAAAACAGTCATTTA
66 AATCAAATCCGTCAACCACACAGTCCAAGTCAGCCACTTGCCCACAAGGGCAAAACAGTCATTTA
96382794 ACACCTTAGGGGCAAAATGGTAATTTTACCCCACAAGG
131 ACACCTTAGGGGCAAAATGGTAATTTTACCCCACAAGG
96382832 TATC
1 TATC
96382836 TCGATAATTC
Statistics
Matches: 172, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
168 172 1.00
ACGTcount: A:0.37, C:0.27, G:0.12, T:0.24
Consensus pattern (168 bp):
TATCATGTCCATATTTGAATCAAACAATCACAGTCAAATCATTCATATCACCAACATATATTCAC
AATCAAATCCGTCAACCACACAGTCCAAGTCAGCCACTTGCCCACAAGGGCAAAACAGTCATTTA
ACACCTTAGGGGCAAAATGGTAATTTTACCCCACAAGG
Found at i:96382897 original size:27 final size:27
Alignment explanation
Indices: 96382830--96383174 Score: 365
Period size: 27 Copynumber: 12.5 Consensus size: 27
96382820 TACCCCACAA
* * *
96382830 GGTATCTCGATAATTCCACCCTACAGG
1 GGTATTTCGATAATTCTACCCTATAGG
* *
96382857 GGCATTT-TAGTAATTCTACCCTATAGG
1 GGTATTTCGA-TAATTCTACCCTATAGG
*
96382884 GGTATTTCGATAATTCTACCCTATAGC
1 GGTATTTCGATAATTCTACCCTATAGG
* * * *
96382911 AGTATTGCTATAATTCTACCCTACACCTTACAAG
1 GGTATTTCGATAATTCTACCCT--A---T--AGG
96382945 GGTATTTC-AGTAATTCTACCCTATAGG
1 GGTATTTCGA-TAATTCTACCCTATAGG
96382972 GGTATTTC-AGTAATTCTACCCTATAGG
1 GGTATTTCGA-TAATTCTACCCTATAGG
* * *
96382999 GGTATTTCGGTAATTCTACCTTACAGG
1 GGTATTTCGATAATTCTACCCTATAGG
*
96383026 GGTATTTCGATAATTCTACCCTATAAG
1 GGTATTTCGATAATTCTACCCTATAGG
* *
96383053 GGTATTTCAATAATTCTACCTTATAGG
1 GGTATTTCGATAATTCTACCCTATAGG
* *
96383080 GGTATTTCGGTAATTCTACCATATAGG
1 GGTATTTCGATAATTCTACCCTATAGG
* *
96383107 GGTATTTCGATAATTTTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTATAGG
*
96383134 GGTATTGT-GATAATTCTACCCTACAGG
1 GGTATT-TCGATAATTCTACCCTATAGG
*
96383161 GGTATTTCGGTAAT
1 GGTATTTCGATAAT
96383175 CTTACAAACC
Statistics
Matches: 270, Mismatches: 35, Indels: 26
0.82 0.11 0.08
Matches are distributed among these distances:
26 2 0.01
27 242 0.90
28 2 0.01
29 2 0.01
32 2 0.01
33 1 0.00
34 19 0.07
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTATTTCGATAATTCTACCCTATAGG
Found at i:96383234 original size:27 final size:27
Alignment explanation
Indices: 96383206--96383380 Score: 233
Period size: 27 Copynumber: 6.5 Consensus size: 27
96383196 AGTTTTTTTC
*
96383206 TAAATCGAGGGTAAAACGGTAATTCTC
1 TAAATCGAGGGTAAAACGGTAATTCTG
* * * * *
96383233 TAAATCAATGGTAAAATGGTAATTTTA
1 TAAATCGAGGGTAAAACGGTAATTCTG
*
96383260 TAAATCGAGGGTAGAACGGTAATTCTG
1 TAAATCGAGGGTAAAACGGTAATTCTG
** *
96383287 TAAATCGAGGGTAAAATAGTAATTTTG
1 TAAATCGAGGGTAAAACGGTAATTCTG
*
96383314 TAAATCGAGGGTAAAACAGTAATTCTG
1 TAAATCGAGGGTAAAACGGTAATTCTG
* *
96383341 TAAATCGAGGGTAAAATGGTAATTTTG
1 TAAATCGAGGGTAAAACGGTAATTCTG
96383368 TAAATCGAGGGTA
1 TAAATCGAGGGTA
96383381 CTTTGATAAT
Statistics
Matches: 128, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 128 1.00
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (27 bp):
TAAATCGAGGGTAAAACGGTAATTCTG
Found at i:96383264 original size:54 final size:54
Alignment explanation
Indices: 96383201--96383380 Score: 288
Period size: 54 Copynumber: 3.3 Consensus size: 54
96383191 ATTTTAGTTT
* * * *
96383201 TTTTCTAAATCGAGGGTAAAACGGTAATTCTCTAAATCAATGGTAAAATGGTAA
1 TTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAA
* * *
96383255 TTTTATAAATCGAGGGTAGAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAA
1 TTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAA
*
96383309 TTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATGGTAA
1 TTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAA
96383363 TTTTGTAAATCGAGGGTA
1 TTTTGTAAATCGAGGGTA
96383381 CTTTGATAAT
Statistics
Matches: 116, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 116 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (54 bp):
TTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAA
Found at i:96383402 original size:27 final size:27
Alignment explanation
Indices: 96383372--96383446 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
96383362 ATTTTGTAAA
*
96383372 TCGAGGGTACTTTGA-TAATTTTACATG
1 TCGAGGGTA-TTTCAGTAATTTTACATG
*
96383399 TCGAGGGTATTTCAGTAATTTTACA-A
1 TCGAGGGTATTTCAGTAATTTTACATG
* *
96383425 ACTGAGGATATTTCAGTAATTT
1 TC-GAGGGTATTTCAGTAATTT
96383447 GGTAAACTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
26 5 0.12
27 37 0.88
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.40
Consensus pattern (27 bp):
TCGAGGGTATTTCAGTAATTTTACATG
Found at i:96386098 original size:56 final size:56
Alignment explanation
Indices: 96386011--96386197 Score: 261
Period size: 56 Copynumber: 3.4 Consensus size: 56
96386001 TGGCATCGAC
96386011 ATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTCCGAT
1 ATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTCCGAT
* * ** *
96386067 ATATGTGTGCGAGTAAGACCACCTTTGATACGTTGGCATTGATATGTGATTCTGAT
1 ATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTCCGAT
* * *
96386123 ATATGTGTGCGAGTAAGGCCACGTTTAATATGTT-GCATCAATATGTGACTT-CAAT
1 ATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGA-TTCCGAT
* *
96386178 AAATATGTGCGAGTAAGACC
1 ATATGTGTGCGAGTAAGACC
96386198 CTGTCTGAGA
Statistics
Matches: 114, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
55 31 0.27
56 83 0.73
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.33
Consensus pattern (56 bp):
ATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTCCGAT
Found at i:96386215 original size:111 final size:112
Alignment explanation
Indices: 96386011--96386228 Score: 302
Period size: 111 Copynumber: 2.0 Consensus size: 112
96386001 TGGCATCGAC
* * *
96386011 ATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTCCGATATATGTGTG
1 ATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTCCAATAAATATGTG
* *
96386076 CGAGTAAGACCACCTTTGATACGTTGGCATTGATATGTGATTCTGAT
66 CGAGTAAGACCACCTTTGAGACGTTGGCATCGATATGTGATTCTGAT
* *
96386123 ATATGTGTGCGAGTAAGGCCACGTTTAATATGTT-GCATCAATATGTGACTT-CAATAAATATGT
1 ATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGA-TTCCAATAAATATGT
96386186 GCGAGTAAGA-C-CCTGTCTGAGACAG-TGGCATCGATATGTGATT
65 GCGAGTAAGACCACCT-T-TGAGAC-GTTGGCATCGATATGTGATT
96386229 ACATGTAAGA
Statistics
Matches: 95, Mismatches: 7, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
109 3 0.03
110 2 0.02
111 55 0.58
112 35 0.37
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (112 bp):
ATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTCCAATAAATATGTG
CGAGTAAGACCACCTTTGAGACGTTGGCATCGATATGTGATTCTGAT
Found at i:96387685 original size:38 final size:38
Alignment explanation
Indices: 96387634--96387709 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
96387624 ACATTCATAT
96387634 TGCTAAGTTGTTAATGCCATGAATGCTATTGGATAATA
1 TGCTAAGTTGTTAATGCCATGAATGCTATTGGATAATA
*
96387672 TGCTAAGTTGTTAATGCCGTGAATGCTATTGGATAATA
1 TGCTAAGTTGTTAATGCCATGAATGCTATTGGATAATA
96387710 AATTGTGTTA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.30, C:0.11, G:0.22, T:0.37
Consensus pattern (38 bp):
TGCTAAGTTGTTAATGCCATGAATGCTATTGGATAATA
Found at i:96392826 original size:207 final size:207
Alignment explanation
Indices: 96392471--96392882 Score: 702
Period size: 207 Copynumber: 2.0 Consensus size: 207
96392461 TTAGGGACTT
* ** *
96392471 GTATGAACATAAGGAACATTCGGTCTAAGCATAGTGTATTCAAATTTTGCATGTTTTGTGTTTTG
1 GTATGAACATAAGGAACATTCGGTCTAAGCACAGTGTATTCAAATTAGGCATGATTTGTGTTTTG
*
96392536 TGCAATTTGGACTAAATTGTAAAAAGTGTAAAATATCAGGGTAAAATAGTATTTTGCCAATTTAT
66 TGCAATTTGGACTAAATTGTAAAAAGTGTAAAATATCAAGGTAAAATAGTATTTTGCCAATTTAT
*
96392601 GTGTTTTTGGACTAAATTGAATAGAATTATGTTTGAATGAGTTTAATTTGAATATTTTTATGTAA
131 GTGTTTTTGGACTAAATTGAATAGAATTATGTTTGAATGAGTTTAATTTGAATATGTTTATGTAA
96392666 CGACCC-AAAATA
196 CG-CCCTAAAATA
* *
96392678 GTATGAACATAAGGAACGTTCGGTCTAAGCACAGTGTATTCAAATTAGGTATGATTTGTGTTTTG
1 GTATGAACATAAGGAACATTCGGTCTAAGCACAGTGTATTCAAATTAGGCATGATTTGTGTTTTG
* *
96392743 TGCAATTTGGACTAAATTGTAAAAAGTGTAAAATGTCAAGGTAAAATAGTAATTTT-CCCATTTA
66 TGCAATTTGGACTAAATTGTAAAAAGTGTAAAATATCAAGGTAAAATAGT-ATTTTGCCAATTTA
96392807 TGTGTTTTTGGACTAAATTGAATAGAATTATGTTTGAATGAGTTTAATTTGAATATGTTTATGTA
130 TGTGTTTTTGGACTAAATTGAATAGAATTATGTTTGAATGAGTTTAATTTGAATATGTTTATGTA
96392872 ACGCCCTAAAA
195 ACGCCCTAAAA
96392883 ATCCCAAACT
Statistics
Matches: 193, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
206 3 0.02
207 185 0.96
208 5 0.03
ACGTcount: A:0.34, C:0.08, G:0.19, T:0.38
Consensus pattern (207 bp):
GTATGAACATAAGGAACATTCGGTCTAAGCACAGTGTATTCAAATTAGGCATGATTTGTGTTTTG
TGCAATTTGGACTAAATTGTAAAAAGTGTAAAATATCAAGGTAAAATAGTATTTTGCCAATTTAT
GTGTTTTTGGACTAAATTGAATAGAATTATGTTTGAATGAGTTTAATTTGAATATGTTTATGTAA
CGCCCTAAAATA
Found at i:96394795 original size:28 final size:28
Alignment explanation
Indices: 96394763--96394824 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
96394753 ATTTACTAGA
*
96394763 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
96394791 ATACCCCTATGTATGCTAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
96394819 ATACCC
1 ATACCC
96394825 ATAGGGTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.32, C:0.27, G:0.08, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:96394974 original size:28 final size:29
Alignment explanation
Indices: 96394933--96394995 Score: 85
Period size: 28 Copynumber: 2.2 Consensus size: 29
96394923 AGGAAGCGTC
*
96394933 CTGGTGGCTATGCCACAAATTATCTAT-T
1 CTGGTGGCTATGCCACAAAATATCTATAT
*
96394961 CTGGTGGC-ACTGCCACAAAATATCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTATAT
96394990 CTGGTG
1 CTGGTG
96394996 ACTCTGTCAC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
27 1 0.03
28 23 0.74
29 7 0.23
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (29 bp):
CTGGTGGCTATGCCACAAAATATCTATAT
Found at i:96395006 original size:29 final size:28
Alignment explanation
Indices: 96394943--96395006 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
96394933 CTGGTGGCTA
* *
96394943 TGCCACAAATTATCTATTCTGGTGGCAC
1 TGCCACAAAATATCTATTCTGGTGACAC
* *
96394971 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTAT-TCTGGTGACAC
*
96395000 TGTCACA
1 TGCCACA
96395007 TTTTTTGTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 15 0.50
29 15 0.50
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (28 bp):
TGCCACAAAATATCTATTCTGGTGACAC
Found at i:96396105 original size:11 final size:10
Alignment explanation
Indices: 96396077--96396111 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
96396067 AGCCTGTAAG
96396077 TATTCTGAAT
1 TATTCTGAAT
*
96396087 TTTTCTGAAT
1 TATTCTGAAT
96396097 ATATTCTGAAT
1 -TATTCTGAAT
96396108 TATT
1 TATT
96396112 TGTCTGTACT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.54
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:96398320 original size:47 final size:47
Alignment explanation
Indices: 96398250--96398596 Score: 543
Period size: 47 Copynumber: 7.4 Consensus size: 47
96398240 CCCTTTGGGA
* *
96398250 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * *
96398297 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
96398344 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
96398391 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
96398438 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCAGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
96398485 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTT-GGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCA-TTCGGC
* *
96398532 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
96398579 CTTATCACATATACACAC
1 CTTATCACATATATACAC
96398597 CTTGTACATC
Statistics
Matches: 276, Mismatches: 22, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
46 2 0.01
47 272 0.99
48 2 0.01
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:96406861 original size:28 final size:28
Alignment explanation
Indices: 96406829--96406893 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
96406819 GATTTACTAG
*
96406829 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
96406857 ATACCCCTATGTATGCTAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
96406885 ATACCCCTA
1 ATACCCCTA
96406894 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:96407040 original size:28 final size:29
Alignment explanation
Indices: 96406999--96407061 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 29
96406989 AGGAAGCGTC
*
96406999 CTGGTGGCTATGCCACAAATTATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTAT
96407027 CTGGTGGC-ACTGCCACAAAATATCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGTAT
96407056 CTGGTG
1 CTGGTG
96407062 ACTCTGTCAC
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
27 1 0.03
28 24 0.75
29 7 0.22
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.32
Consensus pattern (29 bp):
CTGGTGGCTATGCCACAAAATATCTGTAT
Found at i:96407072 original size:29 final size:28
Alignment explanation
Indices: 96407009--96407072 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
96406999 CTGGTGGCTA
* *
96407009 TGCCACAAATTATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
96407037 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
96407066 TGTCACA
1 TGCCACA
96407073 TTTTCTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 16 0.52
29 15 0.48
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:96407549 original size:19 final size:19
Alignment explanation
Indices: 96407525--96407563 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
96407515 TTTTAATTAT
* *
96407525 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
96407544 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
96407563 T
1 T
96407564 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:96408893 original size:24 final size:24
Alignment explanation
Indices: 96408877--96408923 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
96408867 AATCTCGAAA
96408877 TGCCAAAAAGCCGAAATGCCAAAG
1 TGCCAAAAAGCCGAAATGCCAAAG
* *
96408901 TGCCAAAATGCCGAAATGTCAAA
1 TGCCAAAAAGCCGAAATGCCAAA
96408924 AGTTTGGCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.45, C:0.23, G:0.19, T:0.13
Consensus pattern (24 bp):
TGCCAAAAAGCCGAAATGCCAAAG
Found at i:96408906 original size:8 final size:8
Alignment explanation
Indices: 96408874--96408924 Score: 57
Period size: 8 Copynumber: 6.4 Consensus size: 8
96408864 GCAAATCTCG
96408874 AAATGCCA
1 AAATGCCA
* *
96408882 AAAAGCCG
1 AAATGCCA
96408890 AAATGCCA
1 AAATGCCA
*
96408898 AAGTGCCA
1 AAATGCCA
*
96408906 AAATGCCG
1 AAATGCCA
*
96408914 AAATGTCA
1 AAATGCCA
96408922 AAA
1 AAA
96408925 GTTTGGCTAC
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
8 34 1.00
ACGTcount: A:0.49, C:0.22, G:0.18, T:0.12
Consensus pattern (8 bp):
AAATGCCA
Found at i:96409177 original size:29 final size:29
Alignment explanation
Indices: 96409134--96409230 Score: 135
Period size: 29 Copynumber: 3.4 Consensus size: 29
96409124 GAAAGCATGA
* *
96409134 ATATGAATGTGATTTGGGTCTAATGGGCC
1 ATATGAATGTAATTTGGGCCTAATGGGCC
96409163 ATATGAATGTAATTTGGGCCTAATGGGCC
1 ATATGAATGTAATTTGGGCCTAATGGGCC
*
96409192 ATATGAATG-AGA-TTGGGCCTAGTGGGCC
1 ATATGAATGTA-ATTTGGGCCTAATGGGCC
*
96409220 ATATGCATGTA
1 ATATGAATGTA
96409231 TGTAGACATG
Statistics
Matches: 62, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
28 24 0.39
29 38 0.61
ACGTcount: A:0.27, C:0.12, G:0.30, T:0.31
Consensus pattern (29 bp):
ATATGAATGTAATTTGGGCCTAATGGGCC
Found at i:96410799 original size:56 final size:55
Alignment explanation
Indices: 96410703--96410879 Score: 286
Period size: 55 Copynumber: 3.2 Consensus size: 55
96410693 ATGTGATGTA
*
96410703 CGAGTAAGACCACGTTTAA-ACGTTGGCATCGATATCTGATTTCGATATATGTGTG
1 CGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTT-GATATATGTGTG
*
96410758 CAAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTTTGATATATGTGTG
1 CGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGA-TTTGATATATGTGTG
*
96410814 CGAGTAAGACCAC-TTTAGTACGTTGGCATCGATATGTGACTTTGATATATGTGTG
1 CGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGA-TTTGATATATGTGTG
96410869 CGAGTAAGACC
1 CGAGTAAGACC
96410880 CTGTCTGGGA
Statistics
Matches: 115, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
55 69 0.60
56 43 0.37
57 3 0.03
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (55 bp):
CGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTTGATATATGTGTG
Found at i:96410897 original size:111 final size:111
Alignment explanation
Indices: 96410703--96410910 Score: 291
Period size: 111 Copynumber: 1.9 Consensus size: 111
96410693 ATGTGATGTA
96410703 CGAGTAAGACCACGTTTAAACGTTGGCATCGATATCTGATTTCGATATATGTGTGCAAGTAAGAC
1 CGAGTAAGACCACGTTTAAACGTTGGCATCGATATCTGATTTCGATATATGTGTGCAAGTAAGAC
*
96410768 CACGTTTAATACGTTGGCATCGATATGTGATTTTGATATATGTGTG
66 CACGTTGAATACGTTGGCATCGATATGTGATTTTGATATATGTGTG
* * *
96410814 CGAGTAAGACCAC-TTTAGTACGTTGGCATCGATATGTGACTTT-GATATATGTGTGCGAGTAAG
1 CGAGTAAGACCACGTTTA-AACGTTGGCATCGATATCTGA-TTTCGATATATGTGTGCAAGTAAG
*
96410877 ACC-CTGTCTGGGATA-G-TGGCATCGATATGTGATT
64 ACCAC-GT-T-GAATACGTTGGCATCGATATGTGATT
96410911 ATATGTAAGA
Statistics
Matches: 87, Mismatches: 5, Indels: 10
0.85 0.05 0.10
Matches are distributed among these distances:
110 5 0.06
111 74 0.85
112 5 0.06
113 3 0.03
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.33
Consensus pattern (111 bp):
CGAGTAAGACCACGTTTAAACGTTGGCATCGATATCTGATTTCGATATATGTGTGCAAGTAAGAC
CACGTTGAATACGTTGGCATCGATATGTGATTTTGATATATGTGTG
Found at i:96415559 original size:40 final size:41
Alignment explanation
Indices: 96415441--96415570 Score: 129
Period size: 40 Copynumber: 3.0 Consensus size: 41
96415431 ATACGGGCAC
96415441 AGTTCCGAAGAGCATTCGTGCTAGTAGATATATCCGGGCTAA
1 AGTTCCGAAGAGCATTCGTGCTAGTA-ATATATCCGGGCTAA
* *
96415483 AGTTTTCGTTTAAGAGGCATTCCGTGCTAGTGATATATCCGGGCT-A
1 AG-TTCCG---AAGA-GCATT-CGTGCTAGTAATATATCCGGGCTAA
* * *
96415529 AG-TCCGAATAGCATTCGTTGCTAGTAATATATCAGGCCTAA
1 AGTTCCGAAGAGCATTCG-TGCTAGTAATATATCCGGGCTAA
96415570 A
1 A
96415571 CCTCAAGGCA
Statistics
Matches: 73, Mismatches: 7, Indels: 17
0.75 0.07 0.18
Matches are distributed among these distances:
39 2 0.03
40 23 0.32
41 5 0.07
42 2 0.03
43 4 0.05
44 3 0.04
46 7 0.10
47 18 0.25
48 9 0.12
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (41 bp):
AGTTCCGAAGAGCATTCGTGCTAGTAATATATCCGGGCTAA
Found at i:96415715 original size:62 final size:57
Alignment explanation
Indices: 96415597--96415950 Score: 283
Period size: 57 Copynumber: 6.0 Consensus size: 57
96415587 CTTGGAATTT
*
96415597 GAGGCACTGTGTGT-CGCAGTT-TTCAACC-AGCACTATGTGTGCCAGATTCAGTAGTG
1 GAGGCACTATGTGTGCG-AGTTCTTCAACCGAGCACTATGTGTGCCAGA-TCAGTAGTG
*
96415653 GAGGCACTAAATGTGTGCGAGTTCTTTCAACCGAGCAACTATGTGTGCTAGATC-GTACAGTG
1 GAGGCACT--ATGTGTGCGAGTTC-TTCAACCGAGC-ACTATGTGTGCCAGATCAGT--AGTG
* * ** * *
96415715 GAGGCACTATGTGT-CGAGTTCTTC-ATCGAGCACTAGTGTGTGCGAGATTGGTAAATT
1 GAGGCACTATGTGTGCGAGTTCTTCAACCGAGCACTA-TGTGTGCCAGATCAGT-AGTG
* *
96415772 GAGGCAC-ACCTGTGTGCAAGTTCTTCAAAACGAGCAACTATGTGTGCCAGATCAGTAGTGG
1 GAGGCACTA--TGTGTGCGAGTTCTTC-AACCGAGC-ACTATGTGTGCCAGATCAGTAGT-G
* * ** * *
96415833 GAGGCACTATGGTGTGCGAGTTCCTTCAATCGAGCACTATGTGTGCGAGATTGGTAATT
1 GAGGCACTAT-GTGTGCGAGTT-CTTCAACCGAGCACTATGTGTGCCAGATCAGTAGTG
* * * * * *
96415892 G-GGCACCCATGTGTGCGAGTTCTTTAATCGAGCGCTATGTGTGCGAAATCAGTCAGTG
1 GAGGCA-CTATGTGTGCGAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAGT-AGTG
96415950 G
1 G
96415951 GTCACTGTGG
Statistics
Matches: 245, Mismatches: 30, Indels: 44
0.77 0.09 0.14
Matches are distributed among these distances:
56 13 0.05
57 53 0.22
58 37 0.15
59 22 0.09
60 37 0.15
61 48 0.20
62 35 0.14
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.28
Consensus pattern (57 bp):
GAGGCACTATGTGTGCGAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGTG
Found at i:96415806 original size:118 final size:115
Alignment explanation
Indices: 96415597--96415951 Score: 380
Period size: 118 Copynumber: 3.0 Consensus size: 115
96415587 CTTGGAATTT
* * * * * * *
96415597 GAGGCACTGTGTGTCGCAGTT-TTCAACCAGCACTATGTGTGCCAGATTCAGTAGTGGAGGCACT
1 GAGGCACTATGTGTCG-AGTTCTTCATCGAGCACTATGTGTGCGAGATT-GGTAATTGAGGCAC-
** * *
96415661 AAATGTGTGCGAGTTCTTTCAACCGAGCAACTATGTGTGCTAGATC-GTACAGT-G
63 ACCTGTGTGCGAGTTC-TTCAAACGAGCAACTATGTGTGCCAGATCAGT--AGTGG
96415715 GAGGCACTATGTGTCGAGTTCTTCATCGAGCACTAGTGTGTGCGAGATTGGTAAATTGAGGCACA
1 GAGGCACTATGTGTCGAGTTCTTCATCGAGCACTA-TGTGTGCGAGATTGGT-AATTGAGGCACA
*
96415780 CCTGTGTGCAAGTTCTTCAAAACGAGCAACTATGTGTGCCAGATCAGTAGTGG
64 CCTGTGTGCGAGTTCTTC-AAACGAGCAACTATGTGTGCCAGATCAGTAGTGG
96415833 GAGGCACTATGGTGTGCGAGTTCCTTCAATCGAGCACTATGTGTGCGAGATTGGTAATTG-GGCA
1 GAGGCACTAT-GTGT-CGAGTT-CTTC-ATCGAGCACTATGTGTGCGAGATTGGTAATTGAGGCA
* * * * *
96415897 C-CCATGTGTGCGAGTTCTTTAATCGAGC-GCTATGTGTGCGAAATCAGTCAGTGG
62 CACC-TGTGTGCGAGTTCTTCAAACGAGCAACTATGTGTGCCAGATCAGT-AGTGG
96415951 G
1 G
96415952 TCACTGTGGT
Statistics
Matches: 207, Mismatches: 18, Indels: 24
0.83 0.07 0.10
Matches are distributed among these distances:
117 27 0.13
118 92 0.44
119 46 0.22
120 11 0.05
121 20 0.10
122 11 0.05
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (115 bp):
GAGGCACTATGTGTCGAGTTCTTCATCGAGCACTATGTGTGCGAGATTGGTAATTGAGGCACACC
TGTGTGCGAGTTCTTCAAACGAGCAACTATGTGTGCCAGATCAGTAGTGG
Found at i:96415816 original size:61 final size:57
Alignment explanation
Indices: 96415597--96415937 Score: 293
Period size: 61 Copynumber: 5.8 Consensus size: 57
96415587 CTTGGAATTT
* * * * *
96415597 GAGGCACTGTGTGT-CGCAGTT-TTCAA-CCAGCACTATGTGTGCCAGATTCAGTAGTG
1 GAGGCACTATGTGTGCG-AGTTCTTCAATCGAGCACTATGTGTGCGAGATT-GGTAATG
* * *
96415653 GAGGCACTAAATGTGTGCGAGTTCTTTCAACCGAGCAACTATGTGTGCTAGA-TCGTACAGTG
1 GAGGCACT--ATGTGTGCGAGTTC-TTCAATCGAGC-ACTATGTGTGCGAGATTGGTA-A-TG
*
96415715 GAGGCACTATGTGT-CGAGTTCTTC-ATCGAGCACTAGTGTGTGCGAGATTGGTAAATT
1 GAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTA-TGTGTGCGAGATTGGT-AATG
* * * ** *
96415772 GAGGCAC-ACCTGTGTGCAAGTTCTTCAAAACGAGCAACTATGTGTGCCAGATCAGTAGTGG
1 GAGGCACTA--TGTGTGCGAGTTCTTC-AATCGAGC-ACTATGTGTGCGAGATTGGTAAT-G
*
96415833 GAGGCACTATGGTGTGCGAGTTCCTTCAATCGAGCACTATGTGTGCGAGATTGGTAATT
1 GAGGCACTAT-GTGTGCGAGTT-CTTCAATCGAGCACTATGTGTGCGAGATTGGTAATG
* * *
96415892 G-GGCACCCATGTGTGCGAGTTCTTTAATCGAGCGCTATGTGTGCGA
1 GAGGCA-CTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGA
96415938 AATCAGTCAG
Statistics
Matches: 236, Mismatches: 26, Indels: 45
0.77 0.08 0.15
Matches are distributed among these distances:
56 13 0.06
57 47 0.20
58 36 0.15
59 23 0.10
60 36 0.15
61 48 0.20
62 33 0.14
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.28
Consensus pattern (57 bp):
GAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAATG
Found at i:96425807 original size:39 final size:40
Alignment explanation
Indices: 96425706--96425928 Score: 244
Period size: 40 Copynumber: 5.7 Consensus size: 40
96425696 TTGAATGATG
* * * * *
96425706 TCCGGGCTAAGTCCCGAAGGC-TTTCTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
96425746 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
96425786 TCCGGGCTAAG-CCCGAAGGCATTGGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
96425825 TCTGGG-TAAGTCCCGAAGGCATTTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCA-TTTGTGCGAGTTACTAAA
*
96425865 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
96425906 -CCGGGCTATGT-CCGAA-GCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
96425929 AACGAGGAGC
Statistics
Matches: 157, Mismatches: 19, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
38 11 0.07
39 43 0.27
40 79 0.50
41 24 0.15
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:96425921 original size:80 final size:80
Alignment explanation
Indices: 96425706--96425927 Score: 249
Period size: 79 Copynumber: 2.8 Consensus size: 80
96425696 TTGAATGATG
* * * * * *
96425706 TCCGGGCTAAGTCCCGAAGGC-TTTCTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCA-T
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCGAAGGCATT
*
96425769 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
* * *
96425786 TCCGGGCTAAG-CCCGAAGGCATTGGTGTGAGTTACTA-AATCTGGG-TAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGT-CCGAAGGCATT
*
96425848 TTGTGCGAGTTACTAAA
64 TTGTGCGAGATACTAAA
* *
96425865 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCGAA-GCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCGAAGGCATTT
96425928 GAACGAGGAG
Statistics
Matches: 119, Mismatches: 16, Indels: 15
0.79 0.11 0.10
Matches are distributed among these distances:
77 1 0.01
78 14 0.12
79 50 0.42
80 48 0.40
81 6 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCGAAGGCATTTT
GTGCGAGATACTAAA
Found at i:96428990 original size:40 final size:40
Alignment explanation
Indices: 96428945--96429135 Score: 217
Period size: 40 Copynumber: 4.8 Consensus size: 40
96428935 ATAACCACAA
* * *
96428945 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
96428985 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
96429025 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * *
96429065 GCATAAATGCCTTCGGGACTTAGCCC-GATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
96429104 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
96429136 CATTCAAATG
Statistics
Matches: 140, Mismatches: 9, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 40 0.29
40 96 0.69
41 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:96429029 original size:80 final size:79
Alignment explanation
Indices: 96428916--96429134 Score: 235
Period size: 80 Copynumber: 2.8 Consensus size: 79
96428906 ACCCAAGTTT
* * * * * * * * * *
96428916 CTTCGGAATTTAGCCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAGC
1 CTTCGGGACTTAGCCCGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAGC
*
96428980 AACTCGCACAAATGC
66 -ACTAGCACAAATGC
* * *
96428995 CTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
1 CTTCGGGACTTAGCCC-GATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
* *
96429059 TCACTAGCATAAATGC
64 GCACTAGCACAAATGC
* *
96429075 CTTCGGGACTTAGCCCGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATA
96429135 TCATTCAAAT
Statistics
Matches: 115, Mismatches: 21, Indels: 8
0.80 0.15 0.06
Matches are distributed among these distances:
79 49 0.43
80 63 0.55
81 3 0.03
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAGC
ACTAGCACAAATGC
Found at i:96429106 original size:39 final size:40
Alignment explanation
Indices: 96428989--96429134 Score: 224
Period size: 40 Copynumber: 3.7 Consensus size: 40
96428979 CAACTCGCAC
* * * *
96428989 AAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTAGCAT
*
96429029 AAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
96429069 AAATGCCTTCGGGACTTAGCCC-GATAAAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
96429108 AAATGCCTTCGGGACTTAGCCCGGATA
1 AAATGCCTTCGGGACTTAGCCCGGATA
96429135 TCATTCAAAT
Statistics
Matches: 100, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
39 39 0.39
40 57 0.57
41 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
Found at i:96437151 original size:40 final size:40
Alignment explanation
Indices: 96437106--96437297 Score: 219
Period size: 40 Copynumber: 4.8 Consensus size: 40
96437096 ATAACCACAA
* *
96437106 GCACAATTGCCTTCGGGTCTTAACCC-GAGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGA-TATAGCAACTC
*
96437146 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
96437186 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * *
96437226 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
96437266 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
96437298 CATTCAAATG
Statistics
Matches: 142, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 1 0.01
40 135 0.95
41 6 0.04
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:96439512 original size:37 final size:37
Alignment explanation
Indices: 96439449--96439557 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
96439439 AGCTCAGATG
* * *
96439449 AAATCTCCACACGAAGTTATCAGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
96439486 AAATATCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
96439523 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
96439558 ATCTATTTCC
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:96439719 original size:47 final size:47
Alignment explanation
Indices: 96439662--96439801 Score: 226
Period size: 47 Copynumber: 3.0 Consensus size: 47
96439652 ACACATTTCG
* ** *
96439662 CATTAGCCATTCTACCTTATCACATATATGCATGTTCACATTCGTCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
96439709 CATTGGCCATTCGGCCTTATCACATATTTGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
96439756 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATC
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATC
96439802 TCATAGAATC
Statistics
Matches: 86, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 86 1.00
ACGTcount: A:0.25, C:0.29, G:0.11, T:0.35
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:96439733 original size:22 final size:22
Alignment explanation
Indices: 96439706--96439779 Score: 62
Period size: 22 Copynumber: 3.2 Consensus size: 22
96439696 TTCACATTCG
96439706 TCACATTGGCCATTCGGCCTTA
1 TCACATTGGCCATTCGGCCTTA
* * *
96439728 TCACATATTTG-CATGTTC-ACATTCA
1 TCAC--ATTGGCCA--TTCGGCCTT-A
96439753 TCACATTGGCCATTCGGCCTTA
1 TCACATTGGCCATTCGGCCTTA
96439775 TCACA
1 TCACA
96439780 CATATGCATG
Statistics
Matches: 39, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
22 13 0.33
23 9 0.23
24 9 0.23
25 8 0.21
ACGTcount: A:0.23, C:0.30, G:0.14, T:0.34
Consensus pattern (22 bp):
TCACATTGGCCATTCGGCCTTA
Found at i:96455532 original size:40 final size:40
Alignment explanation
Indices: 96455478--96455628 Score: 223
Period size: 40 Copynumber: 3.8 Consensus size: 40
96455468 GGATGATAAC
* * * *
96455478 CGGGCTAAGTCCCGAAGGCATTTGTGCTAATGACTA-ATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAAT
*
96455517 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAT
1 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAAT
*
96455558 CGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTACAAT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAAT
*
96455598 CGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
96455629 AGCTATATCC
Statistics
Matches: 102, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
40 100 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAAT
Found at i:96455654 original size:39 final size:39
Alignment explanation
Indices: 96455478--96455654 Score: 214
Period size: 40 Copynumber: 4.5 Consensus size: 39
96455468 GGATGATAAC
* * *
96455478 CGGGCTAAGTCCCGAAGGCATTTGTGCTAATGACTA-ATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
96455517 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAT
1 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT
* *
96455558 CGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTACAAT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
96455598 CGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* **
96455637 CCGGCTAAACCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
96455655 TACTCGGTTG
Statistics
Matches: 122, Mismatches: 11, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
39 19 0.16
40 101 0.83
41 1 0.01
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (39 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:96463565 original size:40 final size:40
Alignment explanation
Indices: 96463510--96463687 Score: 202
Period size: 40 Copynumber: 4.5 Consensus size: 40
96463500 CGGATGATAA
* * *
96463510 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAATGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACA-T
*
96463550 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-CAT
* *
96463591 -CGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTACAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * *
96463630 CCAGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTACAT
**
96463670 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
96463688 TACTCGGTTG
Statistics
Matches: 121, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
39 17 0.14
40 102 0.84
41 1 0.01
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
Found at i:96463644 original size:80 final size:80
Alignment explanation
Indices: 96463506--96463687 Score: 226
Period size: 80 Copynumber: 2.3 Consensus size: 80
96463496 TATTCGGATG
* * * * *
96463506 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAATGACTAATTCCGGGCTAAGTCCCGAAGGCA
1 ATAATCGGGCTAAGTCCCGAAGGCAATTGTGCGAATGACTAATACCAGGCTAAGTCCCGAAGGCA
*
96463571 TTTGTGCGAGTTA-CT
66 TTTGAGCGAG-TAGCT
* *
96463586 ATAATCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTACA-ACCAGGCTAAGTCCCGAAGGC
1 ATAATCGGGCTAAGTCCCGAAGGCAATTGTGCGAATGACTA-ATACCAGGCTAAGTCCCGAAGGC
96463650 ATTTGAGCGAGTAGCT
65 ATTTGAGCGAGTAGCT
* **
96463666 AT-ATCCGGCTAAACCCCGAAGG
1 ATAATCGGGCTAAGTCCCGAAGG
96463688 TACTCGGTTG
Statistics
Matches: 89, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
79 19 0.21
80 69 0.78
81 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (80 bp):
ATAATCGGGCTAAGTCCCGAAGGCAATTGTGCGAATGACTAATACCAGGCTAAGTCCCGAAGGCA
TTTGAGCGAGTAGCT
Found at i:96470473 original size:39 final size:40
Alignment explanation
Indices: 96470372--96470595 Score: 289
Period size: 40 Copynumber: 5.7 Consensus size: 40
96470362 TCGAATGATG
* * *
96470372 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
96470411 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
96470452 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
96470491 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
96470530 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
96470569 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
96470596 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
39 75 0.45
40 80 0.48
41 10 0.06
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:96470618 original size:79 final size:79
Alignment explanation
Indices: 96470372--96470595 Score: 287
Period size: 79 Copynumber: 2.8 Consensus size: 79
96470362 TCGAATGATG
* * * * *
96470372 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAG-TCCCGAAGGCAT
96470435 TTGTGCGAGTTACTAA
64 TTGTGCGAGTTACTAA
*
96470451 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCAT
*
96470513 TGGTGCGAGTTACTAAA
64 TTGTGCGAGTTACT-AA
* *
96470530 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
96470595 G
66 G
96470596 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 9, Indels: 14
0.85 0.06 0.09
Matches are distributed among these distances:
78 34 0.27
79 62 0.48
80 32 0.25
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGTTACTAA
Found at i:96470626 original size:79 final size:79
Alignment explanation
Indices: 96470372--96470628 Score: 229
Period size: 79 Copynumber: 3.3 Consensus size: 79
96470362 TCGAATGATG
* * * * * * *
96470372 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGTTAAATCCCGAAGGCATTTGTGC-GAGTTACTAATA-CCGGGCTAAG-CCCGAAGGCAT
* ** *
96470435 TTGTGCGAGTTACTAAT
63 TGGAACGAGTTACTAAA
* * *
96470452 TCCGGGCT-AAGCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGG
1 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGG
**
96470516 TGCGAGTTACTAAA
66 AACGAGTTACTAAA
* *
96470530 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
* *
96470594 TGAACGAG-TAGCTATA
64 GGAACGAGTTA-CTAAA
*
96470610 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAATCCCGAAGG
96470629 TACGTGATTC
Statistics
Matches: 150, Mismatches: 21, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
78 34 0.23
79 75 0.50
80 41 0.27
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGG
AACGAGTTACTAAA
Found at i:96480121 original size:12 final size:12
Alignment explanation
Indices: 96480090--96480124 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
96480080 AAGAAACATT
*
96480090 ATCAGAACTAGA
1 ATCAGAATTAGA
96480102 ATCAGAATTAGA
1 ATCAGAATTAGA
*
96480114 ATTAGAATTAG
1 ATCAGAATTAG
96480125 GTGACAGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.49, C:0.09, G:0.17, T:0.26
Consensus pattern (12 bp):
ATCAGAATTAGA
Found at i:96480343 original size:27 final size:26
Alignment explanation
Indices: 96480285--96480403 Score: 139
Period size: 27 Copynumber: 4.5 Consensus size: 26
96480275 AGCATGGCTG
* *
96480285 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
96480311 CCAGAATAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
* *
96480338 CGAGAACAGATATATGTGGTAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
96480365 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
*
96480392 CCAGGACAGATA
1 CCAGAACAGATA
96480404 TATATATGTG
Statistics
Matches: 78, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
26 14 0.18
27 62 0.79
28 2 0.03
ACGTcount: A:0.38, C:0.20, G:0.25, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:96480368 original size:54 final size:54
Alignment explanation
Indices: 96480285--96480406 Score: 158
Period size: 54 Copynumber: 2.3 Consensus size: 54
96480275 AGCATGGCTG
*
96480285 CCAGAACAGATA-ATGTGACAGAGTCACCAGAAT-AGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAG-ATCAGATAATCGTGGCAGAGCCA
* ** * *
96480338 CGAGAACAGATATATGTGGTAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
*
96480392 CCAGGACAGATATAT
1 CCAGAACAGATATAT
96480407 ATATGTGGCG
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
53 13 0.22
54 46 0.78
ACGTcount: A:0.38, C:0.20, G:0.25, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:96480691 original size:27 final size:28
Alignment explanation
Indices: 96480629--96480694 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 28
96480619 CAGTCACTTG
* *
96480629 CCCACAAGGGCAAAATAGTTATTTAACA
1 CCCACAAGGGTAAAATAGTAATTTAACA
* * *
96480657 CCC-TAAGGGTAAAATGGTAATTTTAC-
1 CCCACAAGGGTAAAATAGTAATTTAACA
96480683 CCCACAAGGGTA
1 CCCACAAGGGTA
96480695 TCTCGGTAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
26 3 0.10
27 25 0.81
28 3 0.10
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.23
Consensus pattern (28 bp):
CCCACAAGGGTAAAATAGTAATTTAACA
Found at i:96480702 original size:27 final size:27
Alignment explanation
Indices: 96480672--96480987 Score: 353
Period size: 27 Copynumber: 12.0 Consensus size: 27
96480662 AGGGTAAAAT
* * *
96480672 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
96480699 GGTAATCCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
96480726 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
96480753 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
96480780 GGTAATTCTACCCTACATA-GGTATTTT
1 GGTAATTCTACCCTACA-AGGGTATTTC
* *
96480807 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
96480834 GTTATTTCTACCCTACAGGGGCATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
96480861 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
96480888 AGTAATTCTACCCTAC-A-GG------
1 GGTAATTCTACCCTACAAGGGTATTTC
*
96480907 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
96480934 GGTATTTTTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
96480961 GGTATTTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
96480988 AATAATTTTG
Statistics
Matches: 247, Mismatches: 32, Indels: 20
0.83 0.11 0.07
Matches are distributed among these distances:
19 14 0.06
20 1 0.00
21 2 0.01
25 2 0.01
27 227 0.92
28 1 0.00
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:96480772 original size:81 final size:81
Alignment explanation
Indices: 96480676--96480987 Score: 419
Period size: 81 Copynumber: 4.0 Consensus size: 81
96480666 TAAAATGGTA
* * *
96480676 ATTT-TACCCCACAAGGGTATCTCGGTAATCCTACCCTACAAGGGTATTTCAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCT
96480740 ACAGGGGTATTTCGGT
66 ACAGGGGTATTTCGGT
*
96480756 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACATA-GGTATTTTAGTAATTCTACCC
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACA-AGGGTATTTCAGTAATTCTACCC
*
96480820 TACAGGGGTATTTCGTT
65 TACAGGGGTATTTCGGT
* * * *
96480837 ATTTCTACCCTACAGGGGCATTTCGGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCT
96480902 ACA--GG------GGT
66 ACAGGGGTATTTCGGT
* * * *
96480910 ATTTCTACCCTACAAGGGTATTTCGGTATTTTTACCCTACAAGGGTATTTCGGTATTTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCT
*
96480975 ATAGGGGTATTTC
66 ACAGGGGTATTTC
96480988 AATAATTTTG
Statistics
Matches: 201, Mismatches: 20, Indels: 21
0.83 0.08 0.09
Matches are distributed among these distances:
73 61 0.30
75 2 0.01
79 2 0.01
80 4 0.02
81 131 0.65
82 1 0.00
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (81 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCT
ACAGGGGTATTTCGGT
Done.