Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 288 of 349
Found at i:96480917 original size:19 final size:19
Alignment explanation
Indices: 96480893--96480933 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
96480883 ATTTCAGTAA
*
96480893 TTCTACCCTACAGGGGTAT
1 TTCTACCCTACAAGGGTAT
96480912 TTCTACCCTACAAGGGTAT
1 TTCTACCCTACAAGGGTAT
96480931 TTC
1 TTC
96480934 GGTATTTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.22, C:0.27, G:0.17, T:0.34
Consensus pattern (19 bp):
TTCTACCCTACAAGGGTAT
Found at i:96480918 original size:46 final size:46
Alignment explanation
Indices: 96480861--96480960 Score: 137
Period size: 46 Copynumber: 2.2 Consensus size: 46
96480851 GGGGCATTTC
* * * *
96480861 GGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCCTACAGG
1 GGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAG
* * *
96480907 GGTATTTCTACCCTACAAGGGTATTTCGGTATTTTTACCCTACAAG
1 GGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAG
96480953 GGTATTTC
1 GGTATTTC
96480961 GGTATTTCTA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (46 bp):
GGTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAG
Found at i:96480948 original size:100 final size:100
Alignment explanation
Indices: 96480812--96480994 Score: 303
Period size: 100 Copynumber: 1.8 Consensus size: 100
96480802 ATTTTAGTAA
* * *
96480812 TTCTACCCTACAGGGGTATTTCGTTATTTCTACCCTACAGGGGCATTTCGGTAATTCTACCCTAT
1 TTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGCATTTCGGTAATTCTACCCTAT
*
96480877 AGGGGTATTTCAGTAATTCTACCCTACAGGGGTAT
66 AGGGGTATTTCAATAATTCTACCCTACAGGGGTAT
* * *
96480912 TTCTACCCTACAAGGGTATTTCGGTATTTTTACCCTACAAGGGTATTTCGGTATTTCTACCCTAT
1 TTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGCATTTCGGTAATTCTACCCTAT
96480977 AGGGGTATTTCAATAATT
66 AGGGGTATTTCAATAATT
96480995 TTGTAAATGG
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
100 76 1.00
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (100 bp):
TTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGCATTTCGGTAATTCTACCCTAT
AGGGGTATTTCAATAATTCTACCCTACAGGGGTAT
Found at i:96480956 original size:73 final size:73
Alignment explanation
Indices: 96480836--96480987 Score: 223
Period size: 73 Copynumber: 2.1 Consensus size: 73
96480826 GGTATTTCGT
* * *
96480836 TATTTCTACCCTACAGGGGCATTTCGGTAATTCTACCCTATAGGGGTATTTCAGTAATTCTACCC
1 TATTTCTACCCTACAAGGGCATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCC
96480901 TACAGGGG
66 TACAGGGG
* * * * *
96480909 TATTTCTACCCTACAAGGGTATTTCGGTATTTTTACCCTACAAGGGTATTTCGGTATTTCTACCC
1 TATTTCTACCCTACAAGGGCATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCC
*
96480974 TATAGGGG
66 TACAGGGG
96480982 TATTTC
1 TATTTC
96480988 AATAATTTTG
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
73 70 1.00
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (73 bp):
TATTTCTACCCTACAAGGGCATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCC
TACAGGGG
Found at i:96481074 original size:27 final size:27
Alignment explanation
Indices: 96481044--96481108 Score: 112
Period size: 27 Copynumber: 2.4 Consensus size: 27
96481034 GGTACTTTGG
96481044 TAATTTTACAAGTCGAGGGTATTTCAA
1 TAATTTTACAAGTCGAGGGTATTTCAA
*
96481071 TAATTTTACCAGTCGAGGGTATTTCAA
1 TAATTTTACAAGTCGAGGGTATTTCAA
*
96481098 TAATTTCACAA
1 TAATTTTACAA
96481109 ATTAGGGGTA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.37
Consensus pattern (27 bp):
TAATTTTACAAGTCGAGGGTATTTCAA
Found at i:96481352 original size:27 final size:27
Alignment explanation
Indices: 96481098--96481345 Score: 322
Period size: 27 Copynumber: 9.2 Consensus size: 27
96481088 GGTATTTCAA
* **
96481098 TAATTTCACAAATTAGGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
*
96481125 TAATTTTACAAACTAGGGGTATTTT-G
1 TAATTTTACAAACCAGGGGTATTTTGG
*
96481151 AAATTTTACAAACCAGGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
* *
96481178 TAATTTTACAAACTAGGGGTATTTTGA
1 TAATTTTACAAACCAGGGGTATTTTGG
96481205 TAATTTTACAAACCAGGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
*
96481232 TAATTTTACAAACCAGGGGTATTTTCG
1 TAATTTTACAAACCAGGGGTATTTTGG
* *
96481259 TAATTTTATAAACTAGGGGTATTCTT-G
1 TAATTTTACAAACCAGGGGTATT-TTGG
* *
96481286 TAATTTTATAAACCAAGGGTATTCTT-G
1 TAATTTTACAAACCAGGGGTATT-TTGG
** *
96481313 TAATTTTGTAAACCAAGGGTATTTTGG
1 TAATTTTACAAACCAGGGGTATTTTGG
96481340 TAATTT
1 TAATTT
96481346 CGTAAACTAA
Statistics
Matches: 203, Mismatches: 15, Indels: 6
0.91 0.07 0.03
Matches are distributed among these distances:
26 26 0.13
27 175 0.86
28 2 0.01
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
TAATTTTACAAACCAGGGGTATTTTGG
Found at i:96483341 original size:19 final size:19
Alignment explanation
Indices: 96483317--96483362 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
96483307 GAATCAGAAT
* * *
96483317 CAGAATTAGAATTAGGTGA
1 CAGAATCAGAATCAGGTAA
*
96483336 CAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGGTAA
96483355 CAGAATCA
1 CAGAATCA
96483363 AAAATTAGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.43, C:0.13, G:0.22, T:0.22
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTAA
Found at i:96483554 original size:27 final size:26
Alignment explanation
Indices: 96483492--96483602 Score: 132
Period size: 27 Copynumber: 4.2 Consensus size: 26
96483482 AGCATGGCTG
* *
96483492 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
96483518 CCAGAGCAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
* *
96483545 CGAGAACAGATATATGTGGTAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
96483572 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
96483599 CCAG
1 CCAG
96483603 GACATATATA
Statistics
Matches: 72, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 14 0.19
27 56 0.78
28 2 0.03
ACGTcount: A:0.36, C:0.22, G:0.26, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:96483575 original size:54 final size:54
Alignment explanation
Indices: 96483492--96483613 Score: 156
Period size: 54 Copynumber: 2.3 Consensus size: 54
96483482 AGCATGGCTG
*
96483492 CCAGAACAGATA-ATGTGACAGAGTCACCAGAGCAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAGCAGATAATCGTGGCAGAGCCA
* ** * * *
96483545 CGAGAACAGATATATGTGGTAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAGCAGATAATCGTGGCAGAGCCA
* *
96483599 CCAGGACATATATAT
1 CCAGAACAGATATAT
96483614 ATGTGGCGAA
Statistics
Matches: 58, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
53 11 0.19
54 47 0.81
ACGTcount: A:0.37, C:0.20, G:0.25, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGAGCAGATAATCGTGGCAGAGCCA
Found at i:96483626 original size:29 final size:30
Alignment explanation
Indices: 96483504--96483631 Score: 89
Period size: 27 Copynumber: 4.6 Consensus size: 30
96483494 AGAACAGATA
* * *
96483504 ATGTGACAGAGTCACCA-GAGCAGATA-AT
1 ATGTGGCAGAGCCACCAGGATCAGATATAT
* * *
96483532 -CGTGGCAGAGCCACGA-GAACAG--ATAT
1 ATGTGGCAGAGCCACCAGGATCAGATATAT
*
96483558 ATGTGGTAGAGCCACCA-GATCAGATA-AT
1 ATGTGGCAGAGCCACCAGGATCAGATATAT
* *
96483586 -TGTGGCATAGCCACCAGGA-CATATATAT
1 ATGTGGCAGAGCCACCAGGATCAGATATAT
96483614 ATGTGGC-GAAGCCACCAG
1 ATGTGGCAG-AGCCACCAG
96483632 ATTGCAGCGA
Statistics
Matches: 79, Mismatches: 13, Indels: 15
0.74 0.12 0.14
Matches are distributed among these distances:
25 1 0.01
26 2 0.03
27 54 0.68
28 6 0.08
29 16 0.20
ACGTcount: A:0.34, C:0.21, G:0.27, T:0.18
Consensus pattern (30 bp):
ATGTGGCAGAGCCACCAGGATCAGATATAT
Found at i:96483909 original size:27 final size:27
Alignment explanation
Indices: 96483879--96484180 Score: 304
Period size: 27 Copynumber: 11.2 Consensus size: 27
96483869 GGTAAAATGG
* * *
96483879 TAATTTTACCCCACAAGGGTATCTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
96483906 TAATCCTACCCTACAGGGGTATTTC-A
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
96483932 GTAATTCTACCCTACAGGGGTATTTCGG
1 -TAATTCTACCCTACAAGGGTATTTCGA
* * *
96483960 TATTTCTACCCTACAAGAGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
96483987 TAATTCTACCCTACATGGGTATTT-TA
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
96484013 GTAATTCTACCCTACAGGGGTATTTCGG
1 -TAATTCTACCCTACAAGGGTATTTCGA
* * * * *
96484041 TATTTCTACCCTACAGGGGCATTTTGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* * *
96484068 TAACTCTACCCTATAGGGGTATTTC-A
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
96484094 GTAATTCTACCCTACAGGGGTATTTCGG
1 -TAATTCTACCCTACAAGGGTATTTCGA
* *
96484122 TATTTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
96484149 TAATTCTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAAGGGTATTTCGA
96484176 TAATT
1 TAATT
96484181 TTGTAAATCG
Statistics
Matches: 233, Mismatches: 36, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
26 1 0.00
27 232 1.00
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGA
Found at i:96483936 original size:54 final size:54
Alignment explanation
Indices: 96483877--96484180 Score: 385
Period size: 54 Copynumber: 5.6 Consensus size: 54
96483867 GAGGTAAAAT
* * * * *
96483877 GGTAATTTTACCCCACAAGGGTATCTCGATAATCCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
* * * * *
96483931 AGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGAGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
* *
96483985 GGTAATTCTACCCTACATGGGTATTT-TAGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCGA-TAATTCTACCCTACAGGGGTATTTC
* * * * * *
96484039 GGTATTTCTACCCTACAGGGGCATTTTGGTAACTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
* * * *
96484093 AGTAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
*
96484147 GGTAATTCTACCCTACAGGGGTATTTCAATAATT
1 GGTAATTCTACCCTACAGGGGTATTTCGATAATT
96484181 TTGTAAATCG
Statistics
Matches: 212, Mismatches: 36, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
54 212 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.35
Consensus pattern (54 bp):
GGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
Found at i:96484210 original size:81 final size:81
Alignment explanation
Indices: 96483881--96484180 Score: 476
Period size: 81 Copynumber: 3.7 Consensus size: 81
96483871 TAAAATGGTA
* * * *
96483881 ATTT-TACCCCACAAGGGTATCTCGATAATCCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
96483945 ACAGGGGTATTTCGGT
66 ACAGGGGTATTTCGGT
* * *
96483961 ATTTCTACCCTACAAGAGTATTTCGGTAATTCTACCCTACATGGGTATTTTAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
96484026 ACAGGGGTATTTCGGT
66 ACAGGGGTATTTCGGT
* * * * *
96484042 ATTTCTACCCTACAGGGGCATTTTGGTAACTCTACCCTATAGGGGTATTTCAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
96484107 ACAGGGGTATTTCGGT
66 ACAGGGGTATTTCGGT
*
96484123 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATT
96484181 TTGTAAATCG
Statistics
Matches: 198, Mismatches: 21, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
80 4 0.02
81 194 0.98
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (81 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCT
ACAGGGGTATTTCGGT
Found at i:96484250 original size:81 final size:81
Alignment explanation
Indices: 96484165--96484349 Score: 203
Period size: 81 Copynumber: 2.3 Consensus size: 81
96484155 TACCCTACAG
** * *
96484165 GGGTATTTCAATAATTTTGTAAATCGAAGGTATAACGGTAA-TTCTATAAATCAATGGTACTTTG
1 GGGTATTTCAATAATTTTACAAATCGAAGGTATAACAGTAATTTC-ATAAATCAAGGGTACTTTG
96484229 GTAATTTTACAAGTCGA
65 GTAATTTTACAAGTCGA
* * *** * *
96484246 GGGTATTTCAATAATTTTACAAGTCGAGGGTATTTTAGTAATTTCATAAATCAGGGGTATTTTGG
1 GGGTATTTCAATAATTTTACAAATCGAAGGTATAACAGTAATTTCATAAATCAAGGGTACTTTGG
* *
96484311 TAATTTTACAA-ACTA
66 TAATTTTACAAGTCGA
**
96484326 GGGGTATTTTGATAATTTTACAAA
1 -GGGTATTTCAATAATTTTACAAA
96484350 CCAGGGGTAT
Statistics
Matches: 86, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
80 2 0.02
81 81 0.94
82 3 0.03
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.39
Consensus pattern (81 bp):
GGGTATTTCAATAATTTTACAAATCGAAGGTATAACAGTAATTTCATAAATCAAGGGTACTTTGG
TAATTTTACAAGTCGA
Found at i:96484539 original size:27 final size:27
Alignment explanation
Indices: 96484220--96484532 Score: 380
Period size: 27 Copynumber: 11.6 Consensus size: 27
96484210 ATAAATCAAT
* **
96484220 GGTACTTTGGTAATTTTACAAGTC-GAG
1 GGTATTTTGGTAATTTTACAAACCAG-G
*** **
96484247 GGTATTTCAATAATTTTACAAGTC-GAG
1 GGTATTTTGGTAATTTTACAAACCAG-G
* * * *
96484274 GGTATTTTAGTAATTTCATAAATCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
*
96484301 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
*
96484328 GGTATTTTGATAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
*
96484355 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
*
96484382 GGTATTTTGATAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
96484409 GGTATTTTGGTAATTTTACAAACCAGG
1 GGTATTTTGGTAATTTTACAAACCAGG
* * *
96484436 GGTATTTTGGTGATTTTATAAACCAAG
1 GGTATTTTGGTAATTTTACAAACCAGG
96484463 GGTATTCTT-GTAATTTTACAAACCAGG
1 GGTATT-TTGGTAATTTTACAAACCAGG
** *
96484490 GGTATTTTGGTAATTTTGTAAACCAAG
1 GGTATTTTGGTAATTTTACAAACCAGG
96484517 GGTATTTTGGTAATTT
1 GGTATTTTGGTAATTT
96484533 CATAAACTAA
Statistics
Matches: 253, Mismatches: 30, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
26 2 0.01
27 248 0.98
28 3 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACCAGG
Found at i:96485730 original size:23 final size:23
Alignment explanation
Indices: 96485704--96485748 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
96485694 TAGACCTGGA
*
96485704 TTAT-TTTTATTTTTTTCTTTTAG
1 TTATATTTT-TTTATTTCTTTTAG
*
96485727 TTATATTTTTTTATTTGTTTTA
1 TTATATTTTTTTATTTCTTTTA
96485749 ATTAATGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.16, C:0.02, G:0.04, T:0.78
Consensus pattern (23 bp):
TTATATTTTTTTATTTCTTTTAG
Found at i:96485989 original size:69 final size:69
Alignment explanation
Indices: 96485878--96486022 Score: 263
Period size: 69 Copynumber: 2.1 Consensus size: 69
96485868 ATAAATAGGG
* *
96485878 TAATTTCGATCCTTAATTTATTTTTGCACACATTAGGGACAATGTGCTATATAAAGTGTGAGGGT
1 TAATTTCGATCCTTAATTTATTTTTGCACACATTAGGGACAATGTGCTAAATAAAATGTGAGGGT
96485943 GATA
66 GATA
96485947 TAATTTCGATCCTTAATTTATTTTTGCACACATTAGGGACAATGTGCTAAATAAAATGTGAGGGT
1 TAATTTCGATCCTTAATTTATTTTTGCACACATTAGGGACAATGTGCTAAATAAAATGTGAGGGT
96486012 GATA
66 GATA
96486016 TAGATTT
1 TA-ATTT
96486023 TTTAATTTTT
Statistics
Matches: 73, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
69 69 0.95
70 4 0.05
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (69 bp):
TAATTTCGATCCTTAATTTATTTTTGCACACATTAGGGACAATGTGCTAAATAAAATGTGAGGGT
GATA
Found at i:96486119 original size:20 final size:21
Alignment explanation
Indices: 96486076--96486118 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
96486066 ATTTTTAGAG
96486076 TTAAATTTATTTTTTTGTGTT
1 TTAAATTTATTTTTTTGTGTT
96486097 TTAAATTTATTTTTTTGTGTT
1 TTAAATTTATTTTTTTGTGTT
96486118 T
1 T
96486119 ACAAGTGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.09, T:0.72
Consensus pattern (21 bp):
TTAAATTTATTTTTTTGTGTT
Found at i:96489776 original size:16 final size:17
Alignment explanation
Indices: 96489743--96489779 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
96489733 TTCCAAATCA
96489743 AAAG-GAAGAATAGAGG
1 AAAGAGAAGAATAGAGG
*
96489759 AAAGAGAAGAAT-GGGG
1 AAAGAGAAGAATAGAGG
96489775 AAAGA
1 AAAGA
96489780 ACAATCACCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 12 0.63
17 7 0.37
ACGTcount: A:0.57, C:0.00, G:0.38, T:0.05
Consensus pattern (17 bp):
AAAGAGAAGAATAGAGG
Found at i:96494483 original size:43 final size:43
Alignment explanation
Indices: 96494406--96494582 Score: 255
Period size: 43 Copynumber: 4.1 Consensus size: 43
96494396 AAATTTTTCT
* * *
96494406 GGCGTTTATTGGAAAAAAACGCCGCTAAAGGTCAAGGCTTTTAGC
1 GGCGTTTA-TGG-GAAAAGCGCCGCGAAAGGTCAAGGCTTTTAGC
*
96494451 GGCGTTTATGGGAAAAGCGCCGCGAAAGGTCAAGGCTTTTAGT
1 GGCGTTTATGGGAAAAGCGCCGCGAAAGGTCAAGGCTTTTAGC
96494494 GGCGTTTATGGGAAAAGCGCCGCGAAAGGTCAAGGCTTTTAGC
1 GGCGTTTATGGGAAAAGCGCCGCGAAAGGTCAAGGCTTTTAGC
* * * * *
96494537 GGCGTTTGTGGGAAAAGCACCACTAAATGTCAAGGCTTTTAGC
1 GGCGTTTATGGGAAAAGCGCCGCGAAAGGTCAAGGCTTTTAGC
96494580 GGC
1 GGC
96494583 ACTTTTTCTA
Statistics
Matches: 122, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
43 111 0.91
44 3 0.02
45 8 0.07
ACGTcount: A:0.27, C:0.18, G:0.32, T:0.23
Consensus pattern (43 bp):
GGCGTTTATGGGAAAAGCGCCGCGAAAGGTCAAGGCTTTTAGC
Found at i:96500586 original size:9 final size:9
Alignment explanation
Indices: 96500572--96500679 Score: 90
Period size: 9 Copynumber: 11.3 Consensus size: 9
96500562 ATGTATTAGT
96500572 TAAGTTATG
1 TAAGTTATG
96500581 TAAGTTGTTATG
1 TAA---GTTATG
*
96500593 TACGTTATG
1 TAAGTTATG
* *
96500602 TGAGATATG
1 TAAGTTATG
*
96500611 TAAATTATG
1 TAAGTTATG
96500620 TAAGTTATG
1 TAAGTTATG
*
96500629 TGAGTTATG
1 TAAGTTATG
96500638 TAAGTTGTTATG
1 TAA---GTTATG
*
96500650 TAAATTATG
1 TAAGTTATG
*
96500659 TAAGTTATA
1 TAAGTTATG
*
96500668 TGAGTTATG
1 TAAGTTATG
96500677 TAA
1 TAA
96500680 TTTCTTTAAG
Statistics
Matches: 77, Mismatches: 16, Indels: 12
0.73 0.15 0.11
Matches are distributed among these distances:
9 60 0.78
12 17 0.22
ACGTcount: A:0.32, C:0.01, G:0.22, T:0.44
Consensus pattern (9 bp):
TAAGTTATG
Found at i:96501321 original size:242 final size:242
Alignment explanation
Indices: 96500704--96501567 Score: 1676
Period size: 242 Copynumber: 3.6 Consensus size: 242
96500694 GATCAATATC
96500704 AGTATTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTAT
1 AGTATTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTAT
96500769 ATCTTACAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAAT
66 ATCTTACAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAAT
96500834 ATTTAAAATAAGGTTGGAGAGAAGGTCAGATATTGTTGTCATTTTAATGGACAAGCAAGCTACAT
131 ATTTAAAATAAGGTTGGAGAGAAGGTCAGATATTGTTGTCATTTTAATGGACAAGCAAGCTACAT
96500899 GGTAATAAATATTCAATAGTAAATGAGCTCGATAGAAA-TTTTTTCA
196 GGTAATAAATATTCAATAGTAAATGAGCTCGATAGAAATTTTTTTCA
*
96500945 AGTATTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTATACCTAGGGAGGATCCATTAT
1 AGTATTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTAT
*
96501010 ATCTTACAGCTCGATATAAGGCAACCCGTCAGGTTTCCAACCTATATACTTTGAATCTTTAAAAT
66 ATCTTACAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAAT
96501075 ATTTAAAATAAGGTTGGAGAGAAGGTCAGATATTGTTGTCATTTTAATGGACAAGCAAGCTACAT
131 ATTTAAAATAAGGTTGGAGAGAAGGTCAGATATTGTTGTCATTTTAATGGACAAGCAAGCTACAT
96501140 GGTAATAAATATTCAATAGTAAATGAGCTCGATAGAAATTTTTTTCA
196 GGTAATAAATATTCAATAGTAAATGAGCTCGATAGAAATTTTTTTCA
*
96501187 AGTATTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAAGGAGGATCCATTAT
1 AGTATTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTAT
*
96501252 ATCTTACAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGTCTATATACTTTGAATCTTTAAAAT
66 ATCTTACAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAAT
*
96501317 ATTTAAAATAAGGTTGGAGAGAATGTCAGATATTGTTGTCATTTTAATGGACAAGCAAGCTACAT
131 ATTTAAAATAAGGTTGGAGAGAAGGTCAGATATTGTTGTCATTTTAATGGACAAGCAAGCTACAT
96501382 GGTAATAAATATTCAATAGTAAATGAGCTCGATAGAAATTTTTTTCA
196 GGTAATAAATATTCAATAGTAAATGAGCTCGATAGAAATTTTTTTCA
96501429 AGTATTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTAT
1 AGTATTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTAT
96501494 ATCTTACAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAAT
66 ATCTTACAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAAT
96501559 ATTTAAAAT
131 ATTTAAAAT
96501568 CTAATGGAGC
Statistics
Matches: 613, Mismatches: 9, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
241 231 0.38
242 382 0.62
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.35
Consensus pattern (242 bp):
AGTATTTTTGAATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTAT
ATCTTACAGCTCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAAT
ATTTAAAATAAGGTTGGAGAGAAGGTCAGATATTGTTGTCATTTTAATGGACAAGCAAGCTACAT
GGTAATAAATATTCAATAGTAAATGAGCTCGATAGAAATTTTTTTCA
Found at i:96504631 original size:27 final size:28
Alignment explanation
Indices: 96504592--96504647 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
96504582 TGGGAAAGAG
* *
96504592 GAGTGCGAAGGTGACGCAGCAGATGGTC
1 GAGTGCGAAGGTGACACAACAGATGGTC
* *
96504620 GAGT-CGACGGTGATACAACAGATGGTC
1 GAGTGCGAAGGTGACACAACAGATGGTC
96504647 G
1 G
96504648 GGTCCGGCGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 20 0.83
28 4 0.17
ACGTcount: A:0.27, C:0.18, G:0.39, T:0.16
Consensus pattern (28 bp):
GAGTGCGAAGGTGACACAACAGATGGTC
Found at i:96504721 original size:12 final size:13
Alignment explanation
Indices: 96504704--96504735 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
96504694 TAGGGTTAGG
96504704 GGGGAAA-TTTTA
1 GGGGAAAGTTTTA
96504716 GGGGAAAGTTTTA
1 GGGGAAAGTTTTA
96504729 GGGGAAA
1 GGGGAAA
96504736 AACACTTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 7 0.37
13 12 0.63
ACGTcount: A:0.34, C:0.00, G:0.41, T:0.25
Consensus pattern (13 bp):
GGGGAAAGTTTTA
Found at i:96505202 original size:16 final size:18
Alignment explanation
Indices: 96505171--96505204 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
96505161 TTGATTTATT
96505171 TAATATATAATATAAAAA
1 TAATATATAATATAAAAA
96505189 TAATATA-AAT-TAAAAA
1 TAATATATAATATAAAAA
96505205 ACAATCAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 3 0.19
18 7 0.44
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
TAATATATAATATAAAAA
Found at i:96505349 original size:26 final size:27
Alignment explanation
Indices: 96505320--96505394 Score: 109
Period size: 26 Copynumber: 2.9 Consensus size: 27
96505310 AAGAATTAGA
*
96505320 TAAAATTTGAAATATTGAAAATTATT-
1 TAAAATTTGAAATCTTGAAAATTATTC
*
96505346 TAAAATTTGAAATCTTGAAATTTATTC
1 TAAAATTTGAAATCTTGAAAATTATTC
*
96505373 T-AAATTTGAAATCTTTAAAATT
1 TAAAATTTGAAATCTTGAAAATT
96505395 TTAAATTATT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 43 0.98
27 1 0.02
ACGTcount: A:0.45, C:0.04, G:0.07, T:0.44
Consensus pattern (27 bp):
TAAAATTTGAAATCTTGAAAATTATTC
Found at i:96505869 original size:29 final size:28
Alignment explanation
Indices: 96505783--96505873 Score: 92
Period size: 29 Copynumber: 3.1 Consensus size: 28
96505773 TTAATTAAAC
* * *
96505783 CCTTTAACCCCTAACCCATATCCCTTTAA
1 CCTTAAACCCATAACCCATAACCC-TTAA
* *
96505812 CCATTAAACCCATAACCCATGACCTTTAA
1 CC-TTAAACCCATAACCCATAACCCTTAA
* *
96505841 TCCTTAAACCCATAATCTATAACCCTTAA
1 -CCTTAAACCCATAACCCATAACCCTTAA
96505870 CCTT
1 CCTT
96505874 TACCCACTAA
Statistics
Matches: 51, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
28 4 0.08
29 28 0.55
30 19 0.37
ACGTcount: A:0.33, C:0.36, G:0.01, T:0.30
Consensus pattern (28 bp):
CCTTAAACCCATAACCCATAACCCTTAA
Found at i:96506282 original size:28 final size:29
Alignment explanation
Indices: 96506242--96506296 Score: 69
Period size: 28 Copynumber: 1.9 Consensus size: 29
96506232 AATAAATTGT
*
96506242 ATTTTAATCAATATAA-ATATAAATAAACC
1 ATTTAAATCAATA-AATATATAAATAAACC
*
96506271 ATTTAAAT-AATAAATATATACATAAA
1 ATTTAAATCAATAAATATATAAATAAA
96506297 ATACTTTTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 2 0.09
28 14 0.61
29 7 0.30
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (29 bp):
ATTTAAATCAATAAATATATAAATAAACC
Found at i:96506520 original size:114 final size:116
Alignment explanation
Indices: 96506301--96506525 Score: 264
Period size: 114 Copynumber: 2.0 Consensus size: 116
96506291 CATAAAATAC
* *
96506301 TTTTTGCGGCGTTTTTATAAGAAACGCCGCTAATACTAGACCTATTGTGGCGTTTTTATAAAAAC
1 TTTTTGCGGCGTTTTCATAAGAAACGCCGCTAATACTAGACCTATTGTGGCATTTTTATAAAAAC
** *** *
96506366 GCCGCTAATGTCACTAAGGTTTAAAACAAAATGATAGCGTCTTGCTATTTT
66 GCCGCTAATGAAACTAAGGGCCAAAACAAAACGATAGCGTCTTGCTATTTT
*
96506417 TTTTTGCGGCGTTTTCCA-AA-AAACGCCGCTAATACTCA-ACCT-TTAGTGGCATTTTT-TGAA
1 TTTTTGCGGCGTTTT-CATAAGAAACGCCGCTAATACT-AGACCTATT-GTGGCATTTTTATAAA
* **
96506477 AACGCCGCTAATGAAACTAAGGGCCGAAAGGAAACGACT-GCGTCTTGCT
63 AACGCCGCTAATGAAACTAAGGGCCAAAACAAAACGA-TAGCGTCTTGCT
96506526 GAAATTATTA
Statistics
Matches: 93, Mismatches: 12, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
114 43 0.46
115 31 0.33
116 18 0.19
117 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.32
Consensus pattern (116 bp):
TTTTTGCGGCGTTTTCATAAGAAACGCCGCTAATACTAGACCTATTGTGGCATTTTTATAAAAAC
GCCGCTAATGAAACTAAGGGCCAAAACAAAACGATAGCGTCTTGCTATTTT
Found at i:96506639 original size:40 final size:40
Alignment explanation
Indices: 96506584--96506706 Score: 119
Period size: 40 Copynumber: 3.1 Consensus size: 40
96506574 TTGCGGTGTT
* *
96506584 TTTTATAAAAGCGCCGCTAATGCTCGATCTATAGCGGCGC
1 TTTTATAAAAACGCCGCTAATGCTCGATCTATAGCGGCGA
* *
96506624 TTTTATAAAAACGCCGCTAATG-TCTTATCTATAGTGGC-A
1 TTTTATAAAAACGCCGCTAATGCTC-GATCTATAGCGGCGA
* * * *
96506663 TTTGT-TAAGAAACGCTGCTTATGCT-GAACTATAGCGGCGT
1 TTT-TATAA-AAACGCCGCTAATGCTCGATCTATAGCGGCGA
96506703 TTTT
1 TTTT
96506707 TGTTTAAACG
Statistics
Matches: 68, Mismatches: 10, Indels: 11
0.76 0.11 0.12
Matches are distributed among these distances:
39 19 0.28
40 48 0.71
41 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (40 bp):
TTTTATAAAAACGCCGCTAATGCTCGATCTATAGCGGCGA
Found at i:96506848 original size:11 final size:10
Alignment explanation
Indices: 96506830--96506892 Score: 54
Period size: 11 Copynumber: 5.8 Consensus size: 10
96506820 ACAAACTGAA
96506830 ACACCACCAT
1 ACACCACCAT
96506840 ACAACCACCAT
1 AC-ACCACCAT
*
96506851 ATCACCACTAT
1 A-CACCACCAT
*
96506862 ACCACCACTAT
1 A-CACCACCAT
*
96506873 AACACCACTAT
1 -ACACCACCAT
96506884 AACACCACC
1 -ACACCACC
96506893 GTCTCACCAA
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
10 2 0.04
11 43 0.91
12 2 0.04
ACGTcount: A:0.41, C:0.44, G:0.00, T:0.14
Consensus pattern (10 bp):
ACACCACCAT
Found at i:96506881 original size:22 final size:22
Alignment explanation
Indices: 96506829--96506892 Score: 83
Period size: 22 Copynumber: 2.9 Consensus size: 22
96506819 AACAAACTGA
* *
96506829 AACACCACCATACAACCACCAT
1 AACACCACTATACCACCACCAT
* *
96506851 ATCACCACTATACCACCACTAT
1 AACACCACTATACCACCACCAT
*
96506873 AACACCACTATAACACCACC
1 AACACCACTATACCACCACC
96506893 GTCTCACCAA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.42, C:0.44, G:0.00, T:0.14
Consensus pattern (22 bp):
AACACCACTATACCACCACCAT
Found at i:96506892 original size:14 final size:12
Alignment explanation
Indices: 96506853--96506891 Score: 57
Period size: 11 Copynumber: 3.5 Consensus size: 12
96506843 ACCACCATAT
96506853 CACCACTAT-AC
1 CACCACTATAAC
96506864 CACCACTATAA-
1 CACCACTATAAC
96506875 CACCACTATAA-
1 CACCACTATAAC
96506886 CACCAC
1 CACCAC
96506892 CGTCTCACCA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 26 0.96
12 1 0.04
ACGTcount: A:0.41, C:0.44, G:0.00, T:0.15
Consensus pattern (12 bp):
CACCACTATAAC
Found at i:96506900 original size:22 final size:22
Alignment explanation
Indices: 96506843--96506901 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
96506833 CCACCATACA
*
96506843 ACCACCATATCACCACTATACC
1 ACCACCATATCACCACTATAAC
* *
96506865 ACCACTATAACACCACTATAAC
1 ACCACCATATCACCACTATAAC
* *
96506887 ACCACCGTCTCACCA
1 ACCACCATATCACCA
96506902 ACCTTGCACC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.37, C:0.44, G:0.02, T:0.17
Consensus pattern (22 bp):
ACCACCATATCACCACTATAAC
Found at i:96512860 original size:41 final size:41
Alignment explanation
Indices: 96512815--96512896 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
96512805 ATGTGAGAGA
96512815 GAGATTTAGGGGGTTTTCTTTAAATGGAAAGGATTTAATAT
1 GAGATTTAGGGGGTTTTCTTTAAATGGAAAGGATTTAATAT
96512856 GAGATTTAGGGGGTTTTCTTTAAATGGAAAGGATTTAATAT
1 GAGATTTAGGGGGTTTTCTTTAAATGGAAAGGATTTAATAT
96512897 TCTATCTTTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.32, C:0.02, G:0.27, T:0.39
Consensus pattern (41 bp):
GAGATTTAGGGGGTTTTCTTTAAATGGAAAGGATTTAATAT
Found at i:96516203 original size:17 final size:17
Alignment explanation
Indices: 96516181--96516213 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
96516171 AAAAAGAATA
96516181 AAATAATGTTAA-ATTTC
1 AAATAA-GTTAACATTTC
96516198 AAATAAGTTAACATTT
1 AAATAAGTTAACATTT
96516214 ATTGTTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (17 bp):
AAATAAGTTAACATTTC
Found at i:96518619 original size:12 final size:12
Alignment explanation
Indices: 96518584--96518619 Score: 54
Period size: 13 Copynumber: 2.9 Consensus size: 12
96518574 ATGCCATCTA
96518584 TCCACAACCAAT
1 TCCACAACCAAT
*
96518596 TCAACTAACCAAT
1 TCCAC-AACCAAT
96518609 TCCACAACCAA
1 TCCACAACCAA
96518620 AACATATCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.44, C:0.39, G:0.00, T:0.17
Consensus pattern (12 bp):
TCCACAACCAAT
Found at i:96522091 original size:22 final size:21
Alignment explanation
Indices: 96522066--96522141 Score: 71
Period size: 22 Copynumber: 3.3 Consensus size: 21
96522056 TACTTGTATC
96522066 TATAAATATATAAATAATTTTA
1 TATAAATA-ATAAATAATTTTA
96522088 TATAAATAATAAATATGATTTTA
1 TATAAATAATAAATA--ATTTTA
* *
96522111 TTTTAAGAAAAATAAAATAATTTTA
1 -TAT-A-AATAAT-AAATAATTTTA
96522136 TATAAA
1 TATAAA
96522142 GTATTTAATT
Statistics
Matches: 45, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
21 7 0.16
22 10 0.22
23 7 0.16
24 4 0.09
25 7 0.16
26 5 0.11
27 5 0.11
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (21 bp):
TATAAATAATAAATAATTTTA
Found at i:96525946 original size:47 final size:47
Alignment explanation
Indices: 96525895--96525999 Score: 192
Period size: 47 Copynumber: 2.2 Consensus size: 47
96525885 TAGTATTAAT
*
96525895 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
96525942 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
96525989 AATGTGATAAG
1 TATGTGATAAG
96526000 TCCCGAAGGG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
Found at i:96528040 original size:38 final size:38
Alignment explanation
Indices: 96527952--96528042 Score: 105
Period size: 38 Copynumber: 2.4 Consensus size: 38
96527942 GACTTGCTGA
* *
96527952 CTATATGTAGAGATTATGTCCGGCTAAAGACCCGATGG
1 CTATATATAGAGATTATGTCCGGATAAAGACCCGATGG
* * *
96527990 CTATGTACAGAGATTATGTCCGGATTAAGACCC-ACTGG
1 CTATATATAGAGATTATGTCCGGATAAAGACCCGA-TGG
96528028 CT-TCATATAGAGATT
1 CTAT-ATATAGAGATT
96528043 TCATCCGAGC
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
37 2 0.05
38 42 0.95
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.29
Consensus pattern (38 bp):
CTATATATAGAGATTATGTCCGGATAAAGACCCGATGG
Found at i:96528129 original size:40 final size:40
Alignment explanation
Indices: 96528074--96528303 Score: 410
Period size: 40 Copynumber: 5.8 Consensus size: 40
96528064 ACGATGATCT
*
96528074 GGGCTAAGTCCCGAAGGGCATTCGTGCCGGTGTTATATCC
1 GGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTATATCC
96528114 GGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTATAT-C
1 GGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTATATCC
96528153 GGGCTAAAT-CCGAAGGGCATTCGTGCCGGTGTTATATCC
1 GGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTATATCC
96528192 GGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTATATCC
1 GGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTATATCC
* *
96528232 GGGCTAAATCCCGAAGGGTATTCGTGCCGATGTTATATCC
1 GGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTATATCC
*
96528272 GGGCTAAGTCCCGAAGGGCATTCGTGCCGGTG
1 GGGCTAAATCCCGAAGGGCATTCGTGCCGGTG
96528304 ATATGTATTC
Statistics
Matches: 182, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
38 28 0.15
39 20 0.11
40 134 0.74
ACGTcount: A:0.20, C:0.24, G:0.32, T:0.25
Consensus pattern (40 bp):
GGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTATATCC
Found at i:96528213 original size:78 final size:80
Alignment explanation
Indices: 96528074--96528303 Score: 410
Period size: 78 Copynumber: 2.9 Consensus size: 80
96528064 ACGATGATCT
*
96528074 GGGCTAAGTCCCGAAGGGCATTCGTGCCGGTGTTATATCCGGGCTAAATCCCGAAGGGCATTCGT
1 GGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTATATCCGGGCTAAATCCCGAAGGGCATTCGT
96528139 GCCGGTGTTATAT-C
66 GCCGGTGTTATATCC
96528153 GGGCTAAAT-CCGAAGGGCATTCGTGCCGGTGTTATATCCGGGCTAAATCCCGAAGGGCATTCGT
1 GGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTATATCCGGGCTAAATCCCGAAGGGCATTCGT
96528217 GCCGGTGTTATATCC
66 GCCGGTGTTATATCC
* * *
96528232 GGGCTAAATCCCGAAGGGTATTCGTGCCGATGTTATATCCGGGCTAAGTCCCGAAGGGCATTCGT
1 GGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTATATCCGGGCTAAATCCCGAAGGGCATTCGT
96528297 GCCGGTG
66 GCCGGTG
96528304 ATATGTATTC
Statistics
Matches: 145, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
78 68 0.47
79 18 0.12
80 59 0.41
ACGTcount: A:0.20, C:0.24, G:0.32, T:0.25
Consensus pattern (80 bp):
GGGCTAAATCCCGAAGGGCATTCGTGCCGGTGTTATATCCGGGCTAAATCCCGAAGGGCATTCGT
GCCGGTGTTATATCC
Found at i:96532752 original size:47 final size:47
Alignment explanation
Indices: 96532701--96532805 Score: 192
Period size: 47 Copynumber: 2.2 Consensus size: 47
96532691 TAGTATTAAT
*
96532701 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
96532748 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
96532795 AATGTGATAAG
1 TATGTGATAAG
96532806 TCCCGAAGGG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
Found at i:96537442 original size:16 final size:16
Alignment explanation
Indices: 96537421--96537451 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
96537411 TAATAAATTG
*
96537421 ATAAGGTTGAGGTGTT
1 ATAAGGTCGAGGTGTT
96537437 ATAAGGTCGAGGTGT
1 ATAAGGTCGAGGTGT
96537452 GTCTTGGGAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.03, G:0.39, T:0.32
Consensus pattern (16 bp):
ATAAGGTCGAGGTGTT
Found at i:96549037 original size:27 final size:28
Alignment explanation
Indices: 96549007--96549060 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
96548997 TAAAATTCAT
*
96549007 ACTTTAATTA-TAAAATAATTAATTTTC
1 ACTTAAATTATTAAAATAATTAATTTTC
*
96549034 ACTTAAATTATTAACATAATTAATTTT
1 ACTTAAATTATTAAAATAATTAATTTT
96549061 AATTATTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 9 0.38
28 15 0.62
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.48
Consensus pattern (28 bp):
ACTTAAATTATTAAAATAATTAATTTTC
Found at i:96550911 original size:30 final size:30
Alignment explanation
Indices: 96550871--96550928 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
96550861 AAGACCATTT
* *
96550871 CCACATGGGCTGAG-CACACGCCCGTGTGAG
1 CCACACGGGCT-AGCCACACGCCCATGTGAG
*
96550901 CCACACGGGCTAGCCACATGCCCATGTG
1 CCACACGGGCTAGCCACACGCCCATGTG
96550929 GCAGCTTGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 2 0.08
30 22 0.92
ACGTcount: A:0.21, C:0.36, G:0.29, T:0.14
Consensus pattern (30 bp):
CCACACGGGCTAGCCACACGCCCATGTGAG
Found at i:96552014 original size:13 final size:12
Alignment explanation
Indices: 96551995--96552032 Score: 58
Period size: 12 Copynumber: 3.1 Consensus size: 12
96551985 ACTTTAGCCA
*
96551995 TTTTTTTTATTT
1 TTTTTTTTACTT
96552007 TTTATTTTTACTT
1 TTT-TTTTTACTT
96552020 TTTTTTTTACTT
1 TTTTTTTTACTT
96552032 T
1 T
96552033 AATTTACTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 13 0.54
13 11 0.46
ACGTcount: A:0.11, C:0.05, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTTTTTTACTT
Found at i:96561099 original size:43 final size:43
Alignment explanation
Indices: 96560990--96561104 Score: 146
Period size: 43 Copynumber: 2.7 Consensus size: 43
96560980 AGCTCATACA
* * *
96560990 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAATAAAATATCG
*
96561033 ATGCC-ACTGTCCCAGATAG-GGTCTTACACGAAATAAAATAT-G
1 ATGCCAAC-GTCCCAGA-CGTGGTCTTACACGAAATAAAATATCG
96561075 ATGCCAACGTCCCAGGACGTGGTCTTACAC
1 ATGCCAACGTCCCA-GACGTGGTCTTACAC
96561105 ATAAATCATA
Statistics
Matches: 62, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
42 15 0.24
43 46 0.74
44 1 0.02
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAAATAAAATATCG
Found at i:96563112 original size:37 final size:39
Alignment explanation
Indices: 96563017--96563225 Score: 226
Period size: 37 Copynumber: 5.5 Consensus size: 39
96563007 AATGATGTCC
* *
96563017 GGCTAAGTCCGAAGGC-TTTGTGCTAAGTGAC--ATATCCG
1 GGCTAAGTCCGAAGGCATTTGTGC-GAGTTACTAAT-TCCG
* *
96563055 GACTAAGATCCGAAGGCATTTGTGCGAGATACTAATTCCG
1 GGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAATTCCG
96563095 GGCT-AG-CCGAAGGCATTTGTGCGAGTTACTAATTCCG
1 GGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAATTCCG
96563132 GGCTAAGTCCGGAAGGCATTTGTGCGAGTTACTAA-T-CG
1 GGCTAAGTCC-GAAGGCATTTGTGCGAGTTACTAATTCCG
* *
96563170 GGTTAAGTCCGAAGGCATTTGTGC--GTT-CT-ATAACC-
1 GGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAT-TCCG
*
96563205 GGCTATGTCCGAAGGCATTTG
1 GGCTAAGTCCGAAGGCATTTG
96563226 AACGAGGAGC
Statistics
Matches: 151, Mismatches: 10, Indels: 23
0.82 0.05 0.12
Matches are distributed among these distances:
33 1 0.01
34 2 0.01
35 22 0.15
36 1 0.01
37 48 0.32
38 19 0.13
39 18 0.12
40 38 0.25
41 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (39 bp):
GGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAATTCCG
Found at i:96563147 original size:77 final size:77
Alignment explanation
Indices: 96563017--96563194 Score: 224
Period size: 77 Copynumber: 2.3 Consensus size: 77
96563007 AATGATGTCC
* *
96563017 GGCTAAGTCCGAAGGC-TTTGTGCTAAGTGAC--ATATCCGGACTAAGATCCGAAGGCATTTGTG
1 GGCTAAGTCCGAAGGCATTTGTGC-GAGTTACTAAT-TCCGGACTAAGATCCGAAGGCATTTGTG
96563079 CGAGATACTAATTCCG
64 CGAGATACTAA-T-CG
*
96563095 GGCT-AG-CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAG-TCCGGAAGGCATTTGTGC
1 GGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAATTCCGGACTAAGATCC-GAAGGCATTTGTGC
*
96563157 GAGTTACTAATCG
65 GAGATACTAATCG
*
96563170 GGTTAAGTCCGAAGGCATTTGTGCG
1 GGCTAAGTCCGAAGGCATTTGTGCG
96563195 TTCTATAACC
Statistics
Matches: 89, Mismatches: 5, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
75 5 0.06
76 19 0.21
77 59 0.66
78 6 0.07
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (77 bp):
GGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAATTCCGGACTAAGATCCGAAGGCATTTGTGCG
AGATACTAATCG
Found at i:96571085 original size:40 final size:40
Alignment explanation
Indices: 96571001--96571225 Score: 282
Period size: 40 Copynumber: 5.7 Consensus size: 40
96570991 TTGAATGATG
* *
96571001 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
96571040 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
96571081 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
96571120 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
96571160 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
96571199 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
96571226 AACGAGGAGC
Statistics
Matches: 167, Mismatches: 11, Indels: 14
0.87 0.06 0.07
Matches are distributed among these distances:
39 39 0.23
40 115 0.69
41 12 0.07
42 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:96574633 original size:5 final size:5
Alignment explanation
Indices: 96574623--96574670 Score: 55
Period size: 5 Copynumber: 9.6 Consensus size: 5
96574613 TTTGAGTCTA
*
96574623 TTTAT TTTAT TTTAT TTTCT TTTAAT TTT-T TTGT-T TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTT-AT TTTAT TT-TAT TTTAT TTTAT TTT
96574671 TCTATTTATT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
4 4 0.11
5 30 0.79
6 4 0.11
ACGTcount: A:0.15, C:0.02, G:0.02, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:96574665 original size:11 final size:11
Alignment explanation
Indices: 96574623--96574688 Score: 50
Period size: 10 Copynumber: 6.3 Consensus size: 11
96574613 TTTGAGTCTA
96574623 TTTA-TTTTAT
1 TTTATTTTTAT
*
96574633 TTTA-TTTTCT
1 TTTATTTTTAT
*
96574643 TTTA-ATTT-T
1 TTTATTTTTAT
*
96574652 TTTGTTTTTAT
1 TTTATTTTTAT
*
96574663 TTTATTTTTCT
1 TTTATTTTTAT
*
96574674 ATTTATTTGTAT
1 -TTTATTTTTAT
96574686 TTT
1 TTT
96574689 TCCAAGACTT
Statistics
Matches: 45, Mismatches: 8, Indels: 5
0.78 0.14 0.09
Matches are distributed among these distances:
9 4 0.09
10 19 0.42
11 13 0.29
12 9 0.20
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.79
Consensus pattern (11 bp):
TTTATTTTTAT
Found at i:96578451 original size:40 final size:40
Alignment explanation
Indices: 96578382--96578602 Score: 347
Period size: 40 Copynumber: 5.5 Consensus size: 40
96578372 AACCAAGTAT
* * * *
96578382 CTTCGGGAATTAG-CTGGATATAGCT-ACTCGCTCAAATGC
1 CTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATGC
* *
96578421 CTTCGGGATTTAACCCGGTTATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGC
*
96578461 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGC
*
96578501 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGC
96578541 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGC
96578581 CTTCGGGACTTAGCCCGGTTAT
1 CTTCGGGACTTAGCCCGGTTAT
96578603 CATCCGAATA
Statistics
Matches: 171, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 12 0.07
40 159 0.93
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGC
Found at i:96585531 original size:40 final size:40
Alignment explanation
Indices: 96585468--96585685 Score: 325
Period size: 40 Copynumber: 5.5 Consensus size: 40
96585458 AAACCAAGTA
* *
96585468 CCTTCGGGAATTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * * * *
96585507 CCTTCAGGATTTAACCCGGTTATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
96585547 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
96585587 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
96585627 CCTTCGGGACTTAGCCC-GATTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-TATAGTAACTCGCACAAATG
96585667 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
96585686 TTATCATCCG
Statistics
Matches: 162, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
39 13 0.08
40 148 0.91
41 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:96591254 original size:44 final size:42
Alignment explanation
Indices: 96591173--96591319 Score: 118
Period size: 43 Copynumber: 3.4 Consensus size: 42
96591163 TTCCATTATG
* ** * *
96591173 TGATTTCGTGTAAGACCACGTCTGGGATGTTGTCATCG-ACTTT
1 TGATTTCGTGTAAGACCATGTCTGGGACATCGACATCGTA--TT
**
96591216 TTTTTTACGTGTAAGACCATGTCTGGGACATCGACATCGTATT
1 TGATTT-CGTGTAAGACCATGTCTGGGACATCGACATCGTATT
* * * *
96591259 TGATTTCGTGTAAGACCCTGTTTGGGACAGT-GGCATCGATGTT
1 TGATTTCGTGTAAGACCATGTCTGGGACA-TCGACATCG-TATT
* *
96591302 TGATTACATGTAAGACCA
1 TGATTTCGTGTAAGACCA
96591320 CATCTGAGAC
Statistics
Matches: 84, Mismatches: 16, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
42 27 0.32
43 29 0.35
44 27 0.32
45 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.24, T:0.35
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCATGTCTGGGACATCGACATCGTATT
Found at i:96591285 original size:42 final size:43
Alignment explanation
Indices: 96591173--96591319 Score: 129
Period size: 42 Copynumber: 3.4 Consensus size: 43
96591163 TTCCATTATG
* * * * *
96591173 TGATTTCGTGTAAGACCACGTCTGGGA-TGTTGTCATCGACTTTT
1 TGATTACGTGTAAGACCATGTCTGGGACAG-TGACATCGA-TATT
**
96591217 TTTTTACGTGTAAGACCATGTCTGGGACA-TCGACATCG-TATT
1 TGATTACGTGTAAGACCATGTCTGGGACAGT-GACATCGATATT
* * * * *
96591259 TGATTTCGTGTAAGACCCTGTTTGGGACAGTGGCATCGATGTT
1 TGATTACGTGTAAGACCATGTCTGGGACAGTGACATCGATATT
*
96591302 TGATTACATGTAAGACCA
1 TGATTACGTGTAAGACCA
96591320 CATCTGAGAC
Statistics
Matches: 82, Mismatches: 17, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
42 33 0.40
43 20 0.24
44 29 0.35
ACGTcount: A:0.22, C:0.18, G:0.24, T:0.35
Consensus pattern (43 bp):
TGATTACGTGTAAGACCATGTCTGGGACAGTGACATCGATATT
Found at i:96605266 original size:49 final size:47
Alignment explanation
Indices: 96605045--96605549 Score: 796
Period size: 47 Copynumber: 10.6 Consensus size: 47
96605035 CCCTTCGGGA
* * * * *
96605045 CTTATCACATTTATACACTTTCACA-TCTATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTC-ATCACATCGGCCATTAGGC
* *
96605092 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
96605139 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
96605186 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
96605233 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
96605282 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
96605329 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
96605378 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
96605427 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
96605474 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
96605523 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
96605550 TATTCAAATA
Statistics
Matches: 430, Mismatches: 21, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
47 244 0.57
48 2 0.00
49 184 0.43
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:96605283 original size:96 final size:94
Alignment explanation
Indices: 96605045--96605549 Score: 796
Period size: 96 Copynumber: 5.3 Consensus size: 94
96605035 CCCTTCGGGA
* * * * * * *
96605045 CTTATCACATTTATACACTTTCACA-TCTATCACGTTGGCCACTCGGCCCTGTCACATATATACA
1 CTTATCACATATATACACTTTCACATTC-ATCACATCGGCCATTAGGCCTTATCACATATATACA
96605109 CTTTCACATTCATCACATCGGCCATTAGGC
65 CTTTCACATTCATCACATCGGCCATTAGGC
*
96605139 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
96605204 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
96605233 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
96605298 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
96605329 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
* *
96605394 ACACTTTCACATTCATCACATTGGCCATTCGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
96605427 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
96605492 ACTTTCACATTCATCACATTGGCCATTCGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
96605523 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
96605550 TATTCAAATA
Statistics
Matches: 391, Mismatches: 15, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
94 91 0.23
95 2 0.01
96 253 0.65
98 45 0.12
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:96608942 original size:24 final size:24
Alignment explanation
Indices: 96608887--96608942 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
96608877 TGGCTCTCCA
96608887 GAGCTTCCTGATATTGGCTCGCTT
1 GAGCTTCCTGATATTGGCTCGCTT
** *
96608911 GAAATTCCTGATATTGGCTTG-TAT
1 GAGCTTCCTGATATTGGCTCGCT-T
96608935 GAGCTTCC
1 GAGCTTCC
96608943 CATTAATGGC
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 1 0.04
24 25 0.96
ACGTcount: A:0.18, C:0.21, G:0.23, T:0.38
Consensus pattern (24 bp):
GAGCTTCCTGATATTGGCTCGCTT
Found at i:96609013 original size:25 final size:25
Alignment explanation
Indices: 96608948--96609015 Score: 75
Period size: 25 Copynumber: 2.7 Consensus size: 25
96608938 CTTCCCATTA
* *
96608948 ATGGCTCTCCAGAGCTTCTTGTTAC
1 ATGGCTCACAAGAGCTTCTTGTTAC
** *
96608973 ATGGCTCACATTAGCTTCTTGTTAT
1 ATGGCTCACAAGAGCTTCTTGTTAC
96608998 ATGGCTCGA-AAGAGCTTC
1 ATGGCTC-ACAAGAGCTTC
96609016 CCGTTTATGT
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
25 34 0.97
26 1 0.03
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.35
Consensus pattern (25 bp):
ATGGCTCACAAGAGCTTCTTGTTAC
Found at i:96610878 original size:43 final size:43
Alignment explanation
Indices: 96610830--96610937 Score: 144
Period size: 43 Copynumber: 2.5 Consensus size: 43
96610820 GATTAATGAG
*
96610830 ATGTGATTATGTGTAAGACCATGTCTGGGACATTGGCATCATT
1 ATGTGATTATGTGTAAGACCATGTCTGGGAAATTGGCATCATT
* * * *
96610873 ATGTGATTATGTCTAAGACCATGTTTGGGAAATTGGTATCGTT
1 ATGTGATTATGTGTAAGACCATGTCTGGGAAATTGGCATCATT
* * *
96610916 TTTTGATTTTGTGTAAGACCAT
1 ATGTGATTATGTGTAAGACCAT
96610938 AGCTGGGCTA
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.25, C:0.11, G:0.24, T:0.40
Consensus pattern (43 bp):
ATGTGATTATGTGTAAGACCATGTCTGGGAAATTGGCATCATT
Found at i:96618322 original size:42 final size:43
Alignment explanation
Indices: 96618209--96618315 Score: 162
Period size: 43 Copynumber: 2.5 Consensus size: 43
96618199 GATTTACGAG
** *
96618209 ATGTGATTATGTGTAAGACCATGTTTGGGACATTGGCATCATT
1 ATGTGATTGCGTGTAAGACCATGTCTGGGACATTGGCATCATT
*
96618252 ATGTGATTGCGTGTAAGACCATGTCTGGGACATTGGCATCTTT
1 ATGTGATTGCGTGTAAGACCATGTCTGGGACATTGGCATCATT
*
96618295 ATTTGATT-CGTGTAAGACCAT
1 ATGTGATTGCGTGTAAGACCAT
96618316 AGCTGGGTTA
Statistics
Matches: 59, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
42 13 0.22
43 46 0.78
ACGTcount: A:0.24, C:0.14, G:0.25, T:0.36
Consensus pattern (43 bp):
ATGTGATTGCGTGTAAGACCATGTCTGGGACATTGGCATCATT
Found at i:96624298 original size:47 final size:47
Alignment explanation
Indices: 96624245--96624469 Score: 351
Period size: 47 Copynumber: 4.7 Consensus size: 47
96624235 TTAGGATTCT
96624245 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
96624292 ATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATAT--ATGTGATAAGGCCTAATGGCCG
96624341 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
96624388 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
96624435 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
96624470 TCCCGAAGGA
Statistics
Matches: 164, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
47 118 0.72
49 46 0.28
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:96624641 original size:37 final size:37
Alignment explanation
Indices: 96624588--96624740 Score: 234
Period size: 37 Copynumber: 4.1 Consensus size: 37
96624578 CCGAGCTCTA
*
96624588 AAGACCCGATGGCTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
*
96624625 AAGACCCGATGACTACGTGTGGGGATTTCGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
*
96624662 AAGACCCGATGACTACGTATGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
* ** * *
96624699 AAGACCCGATAACTTTGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
96624736 AAGAC
1 AAGAC
96624741 TTCGTAATAA
Statistics
Matches: 106, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 106 1.00
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
Found at i:96631706 original size:12 final size:12
Alignment explanation
Indices: 96631689--96631800 Score: 86
Period size: 13 Copynumber: 8.7 Consensus size: 12
96631679 TGTATTATTC
96631689 ATATTTTATTAT
1 ATATTTTATTAT
96631701 ATATTTTATTTAT
1 ATATTTTA-TTAT
*
96631714 ACATTTTATTATAT
1 ATATTTTA-T-TAT
96631728 ATCATTTTATTAT
1 AT-ATTTTATTAT
96631741 ATATTATTCATTAT
1 ATATT-TT-ATTAT
96631755 ATTATTTTA-TAT
1 A-TATTTTATTAT
96631767 A-AGTATTTATTAT
1 ATA-T-TTTATTAT
*
96631780 TTATTATTATGTAT
1 ATATT-TTAT-TAT
96631794 A-ATTTTA
1 ATATTTTA
96631801 AAAAATTTGT
Statistics
Matches: 84, Mismatches: 4, Indels: 24
0.75 0.04 0.21
Matches are distributed among these distances:
10 1 0.01
11 1 0.01
12 23 0.27
13 32 0.38
14 17 0.20
15 10 0.12
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.62
Consensus pattern (12 bp):
ATATTTTATTAT
Found at i:96631719 original size:13 final size:14
Alignment explanation
Indices: 96631691--96631743 Score: 76
Period size: 15 Copynumber: 3.9 Consensus size: 14
96631681 TATTATTCAT
96631691 ATTTTATTATAT--
1 ATTTTATTATATAC
96631703 ATTTTATT-TATAC
1 ATTTTATTATATAC
96631716 ATTTTATTATATATC
1 ATTTTATTATATA-C
96631731 ATTTTATTATATA
1 ATTTTATTATATA
96631744 TTATTCATTA
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
11 3 0.08
12 8 0.22
13 8 0.22
14 4 0.11
15 14 0.38
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (14 bp):
ATTTTATTATATAC
Found at i:96631719 original size:25 final size:26
Alignment explanation
Indices: 96631691--96631766 Score: 84
Period size: 25 Copynumber: 2.8 Consensus size: 26
96631681 TATTATTCAT
96631691 ATTTTATTATATATTTTAT-TTATAC
1 ATTTTATTATATATTTTATATTATAC
*
96631716 ATTTTATTATATATCATTT-TATTATAT
1 ATTTTATTATATAT--TTTATATTATAC
96631743 ATTATTCATTATATTATTTTATAT
1 ATT-TT-ATTATA-TATTTTATAT
96631767 AAGTATTTAT
Statistics
Matches: 43, Mismatches: 1, Indels: 10
0.80 0.02 0.19
Matches are distributed among these distances:
25 14 0.33
26 1 0.02
27 11 0.26
28 5 0.12
29 9 0.21
30 3 0.07
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (26 bp):
ATTTTATTATATATTTTATATTATAC
Found at i:96631779 original size:25 final size:26
Alignment explanation
Indices: 96631681--96631794 Score: 94
Period size: 27 Copynumber: 4.3 Consensus size: 26
96631671 TTTATCTATG
*
96631681 TATTATTCATATTTTATTATA-TATTT
1 TATTATACATA-TTTATTATATTATTT
96631707 TATTTATACAT-TTTATTATATATCATTT
1 TA-TTATACATATTTATTATAT-T-ATTT
* *
96631735 TATTATATATTATTCATTATATTATTT
1 TATTATACA-TATTTATTATATTATTT
96631762 TA-TATA-AGTATTTATTAT-TTATTAT
1 TATTATACA-TATTTATTATATTATT-T
96631787 TATGTATA
1 TAT-TATA
96631795 ATTTTAAAAA
Statistics
Matches: 74, Mismatches: 5, Indels: 17
0.77 0.05 0.18
Matches are distributed among these distances:
24 5 0.07
25 22 0.30
26 6 0.08
27 24 0.32
28 8 0.11
29 9 0.12
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (26 bp):
TATTATACATATTTATTATATTATTT
Found at i:96639546 original size:49 final size:47
Alignment explanation
Indices: 96639267--96639827 Score: 707
Period size: 47 Copynumber: 11.6 Consensus size: 47
96639257 CCCTTCGGGA
* * *
96639267 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
96639314 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
96639361 CTTATCTCATATATGCA-TGTTCACATTAATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
96639408 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
96639455 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
96639502 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
96639551 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
96639600 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * **
96639649 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAAG-
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
96639695 CTTATCACATATATACACTTTCACATTCATCCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCAT---CA--CAT----T-GGCCATTCGGC
* *
96639752 CTTATCACATATATATACATTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
96639801 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
96639828 TATTCAAATA
Statistics
Matches: 475, Mismatches: 22, Indels: 34
0.89 0.04 0.06
Matches are distributed among these distances:
46 31 0.07
47 237 0.50
49 160 0.34
50 2 0.00
51 3 0.01
54 3 0.01
56 10 0.02
57 8 0.02
59 21 0.04
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:96639777 original size:59 final size:55
Alignment explanation
Indices: 96639669--96639827 Score: 197
Period size: 49 Copynumber: 3.0 Consensus size: 55
96639659 ATATACACTT
*
96639669 TCACATTCATCACATCGGCTATTAAGCTTATCACATATATACACTTTCACATTCA
1 TCACATTCATCACATCGGCCATTAAGCTTATCACATATATACACTTTCACATTCA
* *
96639724 TCCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT--A---T-ACATT-T
1 T-CACATTCATCACATCGGCCATTAAG-CTTATCACATATATACACTTTCACATTCA
* *
96639774 TCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATT
1 TCACATTCATCACATCGGCCATTAAG-CTTATCACATATATACACTTTCACATT
96639828 TATTCAAATA
Statistics
Matches: 92, Mismatches: 4, Indels: 16
0.82 0.04 0.14
Matches are distributed among these distances:
49 39 0.42
50 1 0.01
51 6 0.07
52 1 0.01
54 1 0.01
55 7 0.08
56 23 0.25
57 14 0.15
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.35
Consensus pattern (55 bp):
TCACATTCATCACATCGGCCATTAAGCTTATCACATATATACACTTTCACATTCA
Found at i:96646077 original size:46 final size:46
Alignment explanation
Indices: 96645931--96646101 Score: 156
Period size: 46 Copynumber: 3.7 Consensus size: 46
96645921 TTCCGTATCC
*
96645931 ATGTCGATGCCATGTCCCGGACATGGTCTTACACTGACAT-GTCTCGT
1 ATGTCGATGCCATGTCCCAGACATGGTCTTACACTGACATCGTCT--T
* * * *
96645978 A-GTCTATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTT
1 ATGTCGATGCCATGTCCCAGACATGGTCTTACACTGACAT-CGTCTT
* * * *
96646022 GAGGCCGATG-CATGTCTCAGACAT-GTCTTACACTGTCACTCGTCTT
1 -ATGTCGATGCCATGTCCCAGACATGGTCTTACACTGACA-TCGTCTT
*
96646068 AATGTCGATGTCATGTCCCAGACATGGTCTTACA
1 -ATGTCGATGCCATGTCCCAGACATGGTCTTACA
96646102 TTGGCACACA
Statistics
Matches: 102, Mismatches: 15, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
44 14 0.14
45 14 0.14
46 51 0.50
47 15 0.15
48 8 0.08
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (46 bp):
ATGTCGATGCCATGTCCCAGACATGGTCTTACACTGACATCGTCTT
Found at i:96646842 original size:12 final size:12
Alignment explanation
Indices: 96646825--96646849 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
96646815 CAAAAATGTA
96646825 AAAATCATCAAG
1 AAAATCATCAAG
96646837 AAAATCATCAAG
1 AAAATCATCAAG
96646849 A
1 A
96646850 TCACTTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:96647166 original size:18 final size:17
Alignment explanation
Indices: 96647139--96647174 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
96647129 AAAATGAAAC
96647139 TTTTTCCTTTTATGCAA
1 TTTTTCCTTTTATGCAA
*
96647156 TTTTGTCCTTTTTTGCAA
1 TTTT-TCCTTTTATGCAA
96647174 T
1 T
96647175 CGGGGTTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.14, C:0.17, G:0.08, T:0.61
Consensus pattern (17 bp):
TTTTTCCTTTTATGCAA
Found at i:96648849 original size:7 final size:6
Alignment explanation
Indices: 96648830--96648865 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
96648820 ACGTTAGTTC
*
96648830 TTTCTT TTTCTT TTTCCT TTTCTT TTTCTT CTTTCT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT -TTTCT
96648866 CCACTTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
6 22 0.81
7 5 0.19
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (6 bp):
TTTCTT
Found at i:96649552 original size:62 final size:62
Alignment explanation
Indices: 96649479--96649606 Score: 175
Period size: 62 Copynumber: 2.1 Consensus size: 62
96649469 GTGCAGGGTT
* * *
96649479 CACACGGCCAGGGACACGGGCATGTACCCAGGCCGTGTAACTCACTATTTGTGCTTAAAAAC
1 CACACGACCAGGGACACGGACATGTACCCAGGCCATGTAACTCACTATTTGTGCTTAAAAAC
** ** * *
96649541 CACACGACCAGGGACTTGGATGTGTGCCCAGGCCATGTAACTCACTGTTTGTGCTTAAAAAC
1 CACACGACCAGGGACACGGACATGTACCCAGGCCATGTAACTCACTATTTGTGCTTAAAAAC
96649603 CACA
1 CACA
96649607 TGGCCAAGGC
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.21
Consensus pattern (62 bp):
CACACGACCAGGGACACGGACATGTACCCAGGCCATGTAACTCACTATTTGTGCTTAAAAAC
Found at i:96651297 original size:10 final size:10
Alignment explanation
Indices: 96651282--96651311 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
96651272 AATAAAAAGG
96651282 CATATTATAA
1 CATATTATAA
96651292 CATATTATAA
1 CATATTATAA
*
96651302 CATATAATAA
1 CATATTATAA
96651312 AATCATTCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (10 bp):
CATATTATAA
Found at i:96652619 original size:11 final size:12
Alignment explanation
Indices: 96652602--96652630 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
96652592 TGTATATGAT
96652602 TATATGAATATA
1 TATATGAATATA
96652614 -ATATGAATATA
1 TATATGAATATA
96652625 TATATG
1 TATATG
96652631 TGCCTGGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.41
Consensus pattern (12 bp):
TATATGAATATA
Found at i:96654019 original size:32 final size:32
Alignment explanation
Indices: 96653982--96654045 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
96653972 AATATTAAAT
96653982 TGAAGCATGATAGTTGATTTAATACTATATTA
1 TGAAGCATGATAGTTGATTTAATACTATATTA
96654014 TGAAGCATGATAGTTGATTTAATACTATATTA
1 TGAAGCATGATAGTTGATTTAATACTATATTA
96654046 GTTAATTTAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.06, G:0.16, T:0.41
Consensus pattern (32 bp):
TGAAGCATGATAGTTGATTTAATACTATATTA
Found at i:96663375 original size:55 final size:54
Alignment explanation
Indices: 96663246--96663437 Score: 233
Period size: 55 Copynumber: 3.6 Consensus size: 54
96663236 GTTACGGTTT
* * * *
96663246 AAGGATACCAGGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
* * * * *
96663300 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGCTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG-TTCTATAAGGC
* * * * *
96663355 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
*
96663408 AAGGATACCATGTAAGACCATGTCAAGACA
1 AAGGATACCATGTAAGACCATGCCAAGACA
96663438 AGGAAATTGT
Statistics
Matches: 114, Mismatches: 23, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
53 33 0.29
54 39 0.34
55 42 0.37
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.20
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
Found at i:96663468 original size:53 final size:52
Alignment explanation
Indices: 96663249--96663475 Score: 186
Period size: 53 Copynumber: 4.2 Consensus size: 52
96663239 ACGGTTTAAG
* * * * * *
96663249 GATACCAGGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGAATT-GTAAG-TTAATAAGGCAAA
* * * * *
96663303 GAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGCTACTATAAGGCAAA
1 GATACCATGTAAGACCATGCCAAGACATGGAATTG-TAAGTTA--ATAAGGCAAA
* * * * * *
96663358 GATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGG-AATTGTAAGTTAATAAGGCAAA
* * *
96663411 GATACCATGTAAGACCATGTCAAGACAAGGAAATTGTAAGTTTAAAAAGG-AAA
1 GATACCATGTAAGACCATGCCAAGACATGG-AATTGTAAG-TTAATAAGGCAAA
96663464 GATACCCATGTA
1 GATA-CCATGTA
96663476 TCCTTAGTAT
Statistics
Matches: 137, Mismatches: 30, Indels: 12
0.77 0.17 0.07
Matches are distributed among these distances:
53 50 0.36
54 47 0.34
55 37 0.27
56 3 0.02
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (52 bp):
GATACCATGTAAGACCATGCCAAGACATGGAATTGTAAGTTAATAAGGCAAA
Found at i:96669429 original size:13 final size:13
Alignment explanation
Indices: 96669411--96669437 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
96669401 GTTTTGCATC
96669411 AATTTTAGTTAAA
1 AATTTTAGTTAAA
96669424 AATTTTAGTTAAA
1 AATTTTAGTTAAA
96669437 A
1 A
96669438 GGTAGCGAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.44
Consensus pattern (13 bp):
AATTTTAGTTAAA
Found at i:96693087 original size:46 final size:46
Alignment explanation
Indices: 96693020--96693148 Score: 222
Period size: 46 Copynumber: 2.8 Consensus size: 46
96693010 TGTAACCCGA
* * *
96693020 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
96693066 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
96693112 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
96693149 TGCCCAAATA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:96702870 original size:40 final size:40
Alignment explanation
Indices: 96702813--96703005 Score: 318
Period size: 40 Copynumber: 4.8 Consensus size: 40
96702803 GTATGATATT
96702813 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
*
96702853 TGGAATTGTATCTGGGCTTAAAGACCCGCAGGCTATATGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
96702893 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
* *
96702933 TGGAATTGTATCCGGGCATAAAGACCCGCAGGCT-TCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTAT-ATGC
* *
96702973 TGGAATGGTATCCGGG-TTAAAGACCCGTAGGCT
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCT
96703006 TGCGTTGGAA
Statistics
Matches: 145, Mismatches: 7, Indels: 3
0.94 0.05 0.02
Matches are distributed among these distances:
39 16 0.11
40 129 0.89
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTATATGC
Found at i:96709533 original size:47 final size:47
Alignment explanation
Indices: 96709479--96709625 Score: 177
Period size: 47 Copynumber: 3.1 Consensus size: 47
96709469 TTAGGATTGT
** *
96709479 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
* * *
96709526 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
** * * * * *
96709573 ATGTGATGAACATGAACATGCATATATGTGGTAAAGTCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
96709620 ATGTGA
1 ATGTGA
96709626 AATATGTATG
Statistics
Matches: 86, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 86 1.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
Found at i:96709940 original size:37 final size:37
Alignment explanation
Indices: 96709832--96709940 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
96709822 GGAAATATAT
*
96709832 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
96709869 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
96709906 TCCGGCTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
96709941 CGTCTGAGCT
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:96710876 original size:52 final size:52
Alignment explanation
Indices: 96710814--96710917 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
96710804 TTGGCGAAGT
*
96710814 ATGGTTTTTGGACTAATTTTAACAATGTGATAGTTAAATGAACTAACTTTGC
1 ATGGTTTTTGGACTAATTTTAACAATGTGATAGGTAAATGAACTAACTTTGC
96710866 ATGGTTTTTGGACTAATTTTAACAATGTGATAGGTAAATGAACTAACTTTGC
1 ATGGTTTTTGGACTAATTTTAACAATGTGATAGGTAAATGAACTAACTTTGC
96710918 TATTACAGAT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (52 bp):
ATGGTTTTTGGACTAATTTTAACAATGTGATAGGTAAATGAACTAACTTTGC
Found at i:96711241 original size:42 final size:42
Alignment explanation
Indices: 96711189--96711334 Score: 159
Period size: 42 Copynumber: 3.5 Consensus size: 42
96711179 ATGAGTTTAT
* * *
96711189 GTGTACGACCATATCTGGGATATGGCATCGTTATGAGATTTC
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATATC
* * * *
96711231 GTGTAGGACCATGTCTGGGACATGGCGTCGATATGAGA-ATC
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATATC
* * **
96711272 GTGTAAGACCATAGCTGGGCTATTGGCATCGATATGAGATCCC
1 GTGTAAGACCATATCTGGGATA-TGGCATCGATATGAGATATC
* *
96711315 ATGTAAGATCATATCTGGGA
1 GTGTAAGACCATATCTGGGA
96711335 AATGACATTG
Statistics
Matches: 84, Mismatches: 18, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
41 19 0.23
42 48 0.57
43 17 0.20
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATATC
Found at i:96711350 original size:84 final size:83
Alignment explanation
Indices: 96711189--96711342 Score: 182
Period size: 84 Copynumber: 1.8 Consensus size: 83
96711179 ATGAGTTTAT
* * * ** * * * *
96711189 GTGTACGACCATATCTGGGATATGGCATCGTTATGAGATTTCGTGTAGGACCATGTCTGGGACAT
1 GTGTAAGACCATAGCTGGGATATGGCATCGATATGAGATCCCATGTAAGACCATATCTGGGAAAT
* *
96711254 GGCGTCGATATGAGAATC
66 GACATCGATATGAGAATC
* *
96711272 GTGTAAGACCATAGCTGGGCTATTGGCATCGATATGAGATCCCATGTAAGATCATATCTGGGAAA
1 GTGTAAGACCATAGCTGGGATA-TGGCATCGATATGAGATCCCATGTAAGACCATATCTGGGAAA
96711337 TGACAT
65 TGACAT
96711343 TGGTATGATT
Statistics
Matches: 57, Mismatches: 13, Indels: 1
0.80 0.18 0.01
Matches are distributed among these distances:
83 19 0.33
84 38 0.67
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (83 bp):
GTGTAAGACCATAGCTGGGATATGGCATCGATATGAGATCCCATGTAAGACCATATCTGGGAAAT
GACATCGATATGAGAATC
Found at i:96712313 original size:13 final size:13
Alignment explanation
Indices: 96712297--96712327 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
96712287 CCTAGGGACA
96712297 AGGGCGTGTGCCG
1 AGGGCGTGTGCCG
*
96712310 AGGGTGTGTGCCG
1 AGGGCGTGTGCCG
96712323 AGGGC
1 AGGGC
96712328 ATGTAAAGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.10, C:0.19, G:0.55, T:0.16
Consensus pattern (13 bp):
AGGGCGTGTGCCG
Found at i:96714011 original size:25 final size:25
Alignment explanation
Indices: 96713983--96714030 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
96713973 TTATATTATG
* * *
96713983 AAAATGACTATTTTGCCCCTAGGCA
1 AAAATGACCATTATACCCCTAGGCA
96714008 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
96714031 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGCA
Found at i:96714090 original size:11 final size:11
Alignment explanation
Indices: 96714074--96714129 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
96714064 TATACATGAT
96714074 ATGATATGCAC
1 ATGATATGCAC
*
96714085 ATGATATG--T
1 ATGATATGCAC
96714094 ATGATATGCAC
1 ATGATATGCAC
*
96714105 ATGATATG--G
1 ATGATATGCAC
96714114 ATGATATGCAC
1 ATGATATGCAC
96714125 ATGAT
1 ATGAT
96714130 GTATTCATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:96714098 original size:20 final size:20
Alignment explanation
Indices: 96714073--96714129 Score: 105
Period size: 20 Copynumber: 2.9 Consensus size: 20
96714063 GTATACATGA
96714073 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
96714093 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
96714113 GATGATATGCACATGAT
1 TATGATATGCACATGAT
96714130 GTATTCATAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:96714216 original size:26 final size:25
Alignment explanation
Indices: 96714175--96714247 Score: 112
Period size: 25 Copynumber: 2.9 Consensus size: 25
96714165 GGAGGAAGTG
*
96714175 CAAAAAGGGC-TGTGCCCCAGTTTA
1 CAAAAAGGGCTTTTGCCCCAGTTTA
96714199 CCAAAAAGGGCTTTTGCCCCAGTTTA
1 -CAAAAAGGGCTTTTGCCCCAGTTTA
*
96714225 TAAAAAGGGCTTTTGCCCCAGTT
1 CAAAAAGGGCTTTTGCCCCAGTT
96714248 ATTAAAAGAG
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
25 32 0.71
26 13 0.29
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (25 bp):
CAAAAAGGGCTTTTGCCCCAGTTTA
Found at i:96714260 original size:25 final size:25
Alignment explanation
Indices: 96714176--96714260 Score: 111
Period size: 25 Copynumber: 3.4 Consensus size: 25
96714166 GAGGAAGTGC
* *
96714176 AAAAAGGGC-TGTGCCCCAGTTTACC
1 AAAAAGGGCTTTTGCCCCAGTTTA-T
96714201 AAAAAGGGCTTTTGCCCCAGTTTAT
1 AAAAAGGGCTTTTGCCCCAGTTTAT
96714226 AAAAAGGGCTTTTGCCCCAG-TTAT
1 AAAAAGGGCTTTTGCCCCAGTTTAT
*
96714250 TAAAAGAGGCT
1 AAAAAG-GGCT
96714261 AGGCCTCTAG
Statistics
Matches: 55, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
24 9 0.16
25 33 0.60
26 13 0.24
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (25 bp):
AAAAAGGGCTTTTGCCCCAGTTTAT
Found at i:96714504 original size:31 final size:35
Alignment explanation
Indices: 96714469--96714553 Score: 115
Period size: 38 Copynumber: 2.5 Consensus size: 35
96714459 TGTTTACAGT
96714469 AAAGGCTTCGGCCCA-A-T-AA-TATGAAATATGA
1 AAAGGCTTCGGCCCAGATTGAAGTATGAAATATGA
96714500 AAAGGCTTCGGCCCAGAGTTTTGAAGTATGAAATATGA
1 AAAGGCTTCGGCCCAGA---TTGAAGTATGAAATATGA
96714538 AAAGGCTTCGGCCCAG
1 AAAGGCTTCGGCCCAG
96714554 TATATGCTGA
Statistics
Matches: 47, Mismatches: 0, Indels: 7
0.87 0.00 0.13
Matches are distributed among these distances:
31 15 0.32
32 1 0.02
36 1 0.02
37 2 0.04
38 28 0.60
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (35 bp):
AAAGGCTTCGGCCCAGATTGAAGTATGAAATATGA
Found at i:96719103 original size:48 final size:48
Alignment explanation
Indices: 96719041--96719225 Score: 334
Period size: 48 Copynumber: 3.9 Consensus size: 48
96719031 TATATATGTG
96719041 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
* * *
96719089 CGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
96719137 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
96719185 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
96719226 GTGTGTATAT
Statistics
Matches: 130, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 130 1.00
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.30
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
Found at i:96719478 original size:36 final size:37
Alignment explanation
Indices: 96719366--96719504 Score: 253
Period size: 37 Copynumber: 3.8 Consensus size: 37
96719356 GGGAATATAT
96719366 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
96719403 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
96719440 TCCGGGTAAGACCCGATGACTACGT-TGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
96719476 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
96719505 GGACTATTCG
Statistics
Matches: 99, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
36 34 0.34
37 65 0.66
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:96719490 original size:73 final size:74
Alignment explanation
Indices: 96719366--96719504 Score: 253
Period size: 73 Copynumber: 1.9 Consensus size: 74
96719356 GGGAATATAT
*
96719366 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATGACTACGTGTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATAACTACGTGTG
96719431 GAGATTATG
66 GAGATTATG
*
96719440 TCCGGGTAAGACCCGATGACTACGT-TGGAGATTTTGTCCGGGTAAGACCCGATAACTACGTGTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATAACTACGTGTG
96719504 G
66 G
96719505 GGACTATTCG
Statistics
Matches: 63, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
73 38 0.60
74 25 0.40
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (74 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGATAACTACGTGTG
GAGATTATG
Found at i:96726361 original size:5 final size:5
Alignment explanation
Indices: 96726351--96726400 Score: 50
Period size: 5 Copynumber: 10.0 Consensus size: 5
96726341 TTTGGTATAC
* *
96726351 ATGAT ATGAT ATGCAC ATGAT ATG-T ATGAT ATGCAC ATGAT ATG-T ATGAT
1 ATGAT ATGAT ATG-AT ATGAT ATGAT ATGAT ATG-AT ATGAT ATGAT ATGAT
96726401 CTGCACATGA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
4 8 0.22
5 21 0.57
6 8 0.22
ACGTcount: A:0.36, C:0.08, G:0.20, T:0.36
Consensus pattern (5 bp):
ATGAT
Found at i:96726372 original size:11 final size:11
Alignment explanation
Indices: 96726356--96726411 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
96726346 TATACATGAT
96726356 ATGATATGCAC
1 ATGATATGCAC
*
96726367 ATGATATG--T
1 ATGATATGCAC
96726376 ATGATATGCAC
1 ATGATATGCAC
*
96726387 ATGATATG--T
1 ATGATATGCAC
*
96726396 ATGATCTGCAC
1 ATGATATGCAC
96726407 ATGAT
1 ATGAT
96726412 GTATTCATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
9 15 0.42
11 21 0.58
ACGTcount: A:0.34, C:0.12, G:0.20, T:0.34
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:96726380 original size:20 final size:20
Alignment explanation
Indices: 96726355--96726411 Score: 105
Period size: 20 Copynumber: 2.9 Consensus size: 20
96726345 GTATACATGA
96726355 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
96726375 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
96726395 TATGATCTGCACATGAT
1 TATGATATGCACATGAT
96726412 GTATTCATAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.35
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:96737065 original size:16 final size:16
Alignment explanation
Indices: 96737044--96737080 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
96737034 GAGCCTAGGG
96737044 GCAAAAGTGTAATTAT
1 GCAAAAGTGTAATTAT
96737060 GCAAAAGTGTAATTAT
1 GCAAAAGTGTAATTAT
96737076 GCAAA
1 GCAAA
96737081 TGTTTAGGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.46, C:0.08, G:0.19, T:0.27
Consensus pattern (16 bp):
GCAAAAGTGTAATTAT
Found at i:96738889 original size:39 final size:39
Alignment explanation
Indices: 96738835--96738982 Score: 226
Period size: 39 Copynumber: 3.8 Consensus size: 39
96738825 AAAGCCTTCG
* * * *
96738835 GGACATTAAGCCCGGATATATTTCCAACATATAGCCTGC
1 GGACCTTAAGTCCGGATATAATTCCAGCATATAGCCTGC
* *
96738874 GGACCCTAAGTCCGGATATAATTCCAGCATATAGCCTGT
1 GGACCTTAAGTCCGGATATAATTCCAGCATATAGCCTGC
96738913 GGACCTTAAGTCCGGATATAATTCCAGCATATAGCCTGC
1 GGACCTTAAGTCCGGATATAATTCCAGCATATAGCCTGC
*
96738952 AGACCTTAAGTCCGGATATAATTCCAG-ATAT
1 GGACCTTAAGTCCGGATATAATTCCAGCATAT
96738983 CATGCATATT
Statistics
Matches: 100, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
38 4 0.04
39 96 0.96
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.26
Consensus pattern (39 bp):
GGACCTTAAGTCCGGATATAATTCCAGCATATAGCCTGC
Found at i:96744405 original size:15 final size:15
Alignment explanation
Indices: 96744385--96744415 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
96744375 TGTTTCAACC
96744385 TCTGTCCATTTACTT
1 TCTGTCCATTTACTT
96744400 TCTGTCCATTTACTT
1 TCTGTCCATTTACTT
96744415 T
1 T
96744416 GAACTGGTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.26, G:0.06, T:0.55
Consensus pattern (15 bp):
TCTGTCCATTTACTT
Found at i:96751498 original size:39 final size:39
Alignment explanation
Indices: 96751444--96751522 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
96751434 AAGGGAAAAC
96751444 AAAGAAGCAAAATATCGAGAATTGACAACAGATTGAAAT
1 AAAGAAGCAAAATATCGAGAATTGACAACAGATTGAAAT
96751483 AAAGAAGCAAAATATCGAGAATTGACAACAGATTGAAAT
1 AAAGAAGCAAAATATCGAGAATTGACAACAGATTGAAAT
96751522 A
1 A
96751523 GAACAGAAGG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.54, C:0.10, G:0.18, T:0.18
Consensus pattern (39 bp):
AAAGAAGCAAAATATCGAGAATTGACAACAGATTGAAAT
Found at i:96755428 original size:23 final size:23
Alignment explanation
Indices: 96755397--96755444 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
96755387 TTTCTTGTTC
* *
96755397 AACTTTGGAGATATGGTATTGAT
1 AACTCTGGAGATAGGGTATTGAT
96755420 AACTCTGGAGATAGGGTATTGAT
1 AACTCTGGAGATAGGGTATTGAT
96755443 AA
1 AA
96755445 TCATTTTGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.33, C:0.06, G:0.27, T:0.33
Consensus pattern (23 bp):
AACTCTGGAGATAGGGTATTGAT
Found at i:96756003 original size:16 final size:16
Alignment explanation
Indices: 96755982--96756012 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
96755972 GCCTAACAAC
96755982 TCTCGGTTGTAAATCA
1 TCTCGGTTGTAAATCA
96755998 TCTCGGTTGTAAATC
1 TCTCGGTTGTAAATC
96756013 TCATATAGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.39
Consensus pattern (16 bp):
TCTCGGTTGTAAATCA
Found at i:96759944 original size:37 final size:37
Alignment explanation
Indices: 96759894--96760044 Score: 259
Period size: 37 Copynumber: 4.1 Consensus size: 37
96759884 ACCTTTAGCT
* * *
96759894 CGGACGTAATCTCCACACGAAGTTATCGGGTCTTACC
1 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
*
96759931 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
96759968 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
96760005 CGGACATAATCTCCACACGTAGTCATC-GGTCTTACC
1 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
96760041 CGGA
1 CGGA
96760045 ATATATTTCC
Statistics
Matches: 109, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
36 13 0.12
37 96 0.88
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:96760315 original size:47 final size:47
Alignment explanation
Indices: 96760253--96760592 Score: 425
Period size: 47 Copynumber: 7.1 Consensus size: 47
96760243 ACACGTTTCG
* *
96760253 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATTCATGTTCACATTCATCA
* *
96760300 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATTCATGTTCACATTCATCA
* **
96760347 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATTCATGTTCACATTCATCA
*
96760394 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C--ATATAT-T-CATGTTCACATTCATCA
* *
96760447 CATTGGCCATTCGGCCTTATCACACATACGT-ATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATA-TTCATGTTCACATTCATCA
*
96760494 CATTGGCCATT-GGCCTTATCACACATATATAT-ACGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTAT--CACATATAT-TCA-TGTTCACATTCATCA
* ** *
96760543 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACATATATTCATGTTCACATTCATCA
96760590 CAT
1 CAT
96760593 AAAATCCTAA
Statistics
Matches: 258, Mismatches: 22, Indels: 26
0.84 0.07 0.08
Matches are distributed among these distances:
46 8 0.03
47 151 0.59
48 17 0.07
49 31 0.12
50 8 0.03
51 5 0.02
53 38 0.15
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATTCATGTTCACATTCATCA
Found at i:96760443 original size:147 final size:147
Alignment explanation
Indices: 96760253--96760570 Score: 470
Period size: 147 Copynumber: 2.2 Consensus size: 147
96760243 ACACGTTTCG
* *
96760253 CATTAGCCATTCGGCCTTA-C-CAC--ATATAT-T-CATGTTCACATTCATCACATTGGCCATTC
1 CATTGGCCATTCGGCCTTATCACACATATATATATACAGGTTCACATTCATCACATTGGCCATTC
* * * *
96760312 GGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
66 GGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATT-GGCCTTATCACACATACA
96760377 CAT-GTTCACATTCATCA
130 CATAGTTCACATTCATCA
*
96760394 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCACATTGGCCATTC
1 CATTGGCCATTCGGCCTTATCACACATATATATATACAGGTTCACATTCATCACATTGGCCATTC
* * *
96760459 GGCCTTATCACACATACGTATGTTCACATTCATCACATTGGCCATTGGCCTTATCACACATATAT
66 GGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTGGCCTTATCACACATACAC
96760524 ATACGGTTCACATTCATCA
131 ATA--GTTCACATTCATCA
96760543 CATTGGCCATTCGGCCTTATCACACATA
1 CATTGGCCATTCGGCCTTATCACACATA
96760571 CGCATGTTCA
Statistics
Matches: 157, Mismatches: 11, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
141 18 0.11
142 1 0.01
143 2 0.01
145 6 0.04
146 19 0.12
147 70 0.45
149 41 0.26
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.32
Consensus pattern (147 bp):
CATTGGCCATTCGGCCTTATCACACATATATATATACAGGTTCACATTCATCACATTGGCCATTC
GGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTGGCCTTATCACACATACAC
ATAGTTCACATTCATCA
Found at i:96760464 original size:100 final size:98
Alignment explanation
Indices: 96760253--96760592 Score: 521
Period size: 100 Copynumber: 3.5 Consensus size: 98
96760243 ACACGTTTCG
* * * **
96760253 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* * *
96760318 AT--C-T-CATATATGCATGTTCACATTCATCA
66 ATCACATATATATATACAGGTTCACATTCATCA
96760347 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
96760412 ATCACGCATATATATATACAGGTTCACATTCATCA
66 ATCA--CATATATATATACAGGTTCACATTCATCA
*
96760447 CATTGGCCATTCGGCCTTATCACACATACGTATGTTCACATTCATCACATTGGCCATT-GGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
96760511 ATCACACATATATATAC-GGTTCACATTCATCA
66 ATCACATATATATATACAGGTTCACATTCATCA
*
96760543 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACAT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
96760593 AAAATCCTAA
Statistics
Matches: 228, Mismatches: 12, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
94 62 0.27
96 63 0.28
97 12 0.05
98 1 0.00
99 11 0.05
100 79 0.35
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.32
Consensus pattern (98 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACATATATATATACAGGTTCACATTCATCA
Found at i:96764504 original size:40 final size:40
Alignment explanation
Indices: 96764472--96764823 Score: 578
Period size: 40 Copynumber: 8.8 Consensus size: 40
96764462 CCAGCATGAT
* * * *
96764472 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
96764512 TGCTTTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
96764552 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
96764592 TGCTCTTTGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
96764632 TGCTCTTCGGGACTTAGCCCGGATACATCGCTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
96764672 TGCTCTTCGGGACTTAGCCCGGATACATCGCTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
96764712 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
96764752 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * *
96764792 TGCTCCTCGGGACTTAGCTCGGGTATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
96764824 CTCAATTCTC
Statistics
Matches: 296, Mismatches: 16, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 296 1.00
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:96766149 original size:37 final size:37
Alignment explanation
Indices: 96766090--96766235 Score: 265
Period size: 37 Copynumber: 3.9 Consensus size: 37
96766080 AGCTCAGACG
* *
96766090 TAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
96766127 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
96766164 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
96766201 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
96766236 ATATATTTCC
Statistics
Matches: 105, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 105 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:96766506 original size:47 final size:47
Alignment explanation
Indices: 96766444--96766787 Score: 411
Period size: 47 Copynumber: 7.1 Consensus size: 47
96766434 ACACGTTTCG
* *
96766444 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATTCATGTTCACATTCATCA
* *
96766491 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATTCATGTTCACATTCATCA
* **
96766538 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATTCATGTTCACATTCATCA
*
96766585 CATTGGCCATTCGGCCTTATCACGCATATATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C----ATATAT-T-CATGTTCACATTCATCA
* *
96766640 CATTGGCCATTCGGCCTTATCACACATACGT-ATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATA-TTCATGTTCACATTCATCA
* **
96766687 CATTGGCCATTTGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTAT--CACATATAT-T-CATGTTCACATTCATCA
* ** *
96766738 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACATATATTCATGTTCACATTCATCA
96766785 CAT
1 CAT
96766788 AAAATCCTAA
Statistics
Matches: 257, Mismatches: 26, Indels: 28
0.83 0.08 0.09
Matches are distributed among these distances:
47 160 0.62
49 21 0.08
51 33 0.13
53 5 0.02
55 38 0.15
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATTCATGTTCACATTCATCA
Found at i:96766634 original size:102 final size:98
Alignment explanation
Indices: 96766444--96766787 Score: 507
Period size: 102 Copynumber: 3.5 Consensus size: 98
96766434 ACACGTTTCG
* * * **
96766444 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* * *
96766509 AT--CTC--ATATATGCATGTTCACATTCATCA
66 ATCACACATATATATACAGGTTCACATTCATCA
96766538 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
96766603 ATCACGCATATATATATATACAGGTTCACATTCATCA
66 ATCA--C--ACATATATATACAGGTTCACATTCATCA
* *
96766640 CATTGGCCATTCGGCCTTATCACACATACGTATGTTCACATTCATCACATTGGCCATTTGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
96766705 ATCACACATATATATACGGGTTCACATTCATCA
66 ATCACACATATATATACAGGTTCACATTCATCA
*
96766738 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACAT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
96766788 AAAATCCTAA
Statistics
Matches: 227, Mismatches: 15, Indels: 12
0.89 0.06 0.05
Matches are distributed among these distances:
94 62 0.27
98 75 0.33
100 1 0.00
102 89 0.39
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.32
Consensus pattern (98 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACACATATATATACAGGTTCACATTCATCA
Found at i:96766639 original size:149 final size:150
Alignment explanation
Indices: 96766467--96766765 Score: 465
Period size: 149 Copynumber: 2.0 Consensus size: 150
96766457 GCCTTACCAC
* * * * *
96766467 ATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACAT
1 ATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACAT
*
96766532 TCATCACATTGGCCATTCGGCCTTATCACACATACGCAT-GTTCACATTCATCACATTGGCCATT
66 TCATCACATTGGCCATTCGGCCTTATCACACATACACATGGTTCACATTCATCACATTGGCCATT
*
96766596 CGGCCTTATCACGCATATAT
131 CGGCCTTATCACACATATAT
*
96766616 ATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGTATGTTCACAT
1 ATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACAT
* * *
96766681 TCATCACATTGGCCATTTGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCC
66 TCATCACATTGGCCATTCGGCCTTATCACACATACACAT---GGTTCACATTCATCACATTGGCC
96766746 ATTCGGCCTTATCACACATA
128 ATTCGGCCTTATCACACATA
96766766 CGCATGTTCA
Statistics
Matches: 135, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
149 94 0.70
153 41 0.30
ACGTcount: A:0.27, C:0.28, G:0.12, T:0.33
Consensus pattern (150 bp):
ATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACAT
TCATCACATTGGCCATTCGGCCTTATCACACATACACATGGTTCACATTCATCACATTGGCCATT
CGGCCTTATCACACATATAT
Found at i:96769402 original size:29 final size:27
Alignment explanation
Indices: 96769384--96769453 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
96769374 ATATTAAGTC
*
96769384 CGCATACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
96769411 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
96769439 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
96769454 GTACAATTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:96769447 original size:28 final size:28
Alignment explanation
Indices: 96769384--96769481 Score: 126
Period size: 28 Copynumber: 3.5 Consensus size: 28
96769374 ATATTAAGTC
* *
96769384 CGCATACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
96769411 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
96769439 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
96769468 CGCACACTTAGTGC
1 CGCACACTTAGTGC
96769482 CAATCTCATG
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 21 0.33
28 23 0.37
29 19 0.30
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:96778593 original size:56 final size:56
Alignment explanation
Indices: 96778533--96778781 Score: 374
Period size: 56 Copynumber: 4.4 Consensus size: 56
96778523 TCCAAGACAG
* * *
96778533 GGTCTTACTGGCACACATATATCGAAGTCACATATTGATGCCAACGTATTAAACAT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATTAAACGT
* ** * *
96778589 GGTCTTACTCGCACACATATATCGAAATCACATATTAATGCTAATGTATTAAACGT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATTAAACGT
* *
96778645 GGTCTTACTCGCACACATATATCGAAGTGACATATCGATGCCAACATATTAAACGT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATTAAACGT
* *
96778701 GGTCTTACTCACACACATATATCGGAA-TCACATATCGATGCCAACGTATTAAATGT
1 GGTCTTACTCGCACACATATATC-GAAGTCACATATCGATGCCAACGTATTAAACGT
96778757 GGTCTTACTCGCACACATATATCGA
1 GGTCTTACTCGCACACATATATCGA
96778782 TGCCATGGTC
Statistics
Matches: 174, Mismatches: 18, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
55 2 0.01
56 169 0.97
57 3 0.02
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.29
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATTAAACGT
Done.