Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 289 of 349
Found at i:96784889 original size:46 final size:46
Alignment explanation
Indices: 96784815--96785035 Score: 288
Period size: 46 Copynumber: 4.8 Consensus size: 46
96784805 GTAACCCGCA
* * * *
96784815 CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATC
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATC
* * *
96784861 CATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATC
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATC
* *
96784911 TCA-CA---AACTCGGACTCAACTCAACGAGTTCGGATATTTGCATC
1 -CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATC
96784954 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATC
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATC
96785000 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
96785036 TGCTCAACCA
Statistics
Matches: 153, Mismatches: 13, Indels: 18
0.83 0.07 0.10
Matches are distributed among these distances:
42 2 0.01
43 8 0.05
46 105 0.69
47 28 0.18
49 1 0.01
50 7 0.05
51 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATC
Found at i:96798189 original size:27 final size:27
Alignment explanation
Indices: 96798133--96798220 Score: 113
Period size: 27 Copynumber: 3.2 Consensus size: 27
96798123 ATGCGGCCAA
* *
96798133 AAGTGTGCGAGTGTGACTATGTAGCACT
1 AAGTGTGCGA-TTTGATTATGTAGCACT
*
96798161 AAGTGTGCGATTTGATTACGTAGCACT
1 AAGTGTGCGATTTGATTATGTAGCACT
* *
96798188 AAGTGTGCGAGTTGATTATATAGCACT
1 AAGTGTGCGATTTGATTATGTAGCACT
*
96798215 GAGTGT
1 AAGTGT
96798221 TGCGGACTCA
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
27 43 0.81
28 10 0.19
ACGTcount: A:0.26, C:0.12, G:0.30, T:0.32
Consensus pattern (27 bp):
AAGTGTGCGATTTGATTATGTAGCACT
Found at i:96800759 original size:54 final size:54
Alignment explanation
Indices: 96800669--96800843 Score: 185
Period size: 54 Copynumber: 3.3 Consensus size: 54
96800659 TATTGAGTCT
* * * * * *
96800669 GCACACTCAGTGCTATTATAATC-ACTCGCACACTTAGTGCTACGTAATCAATC
1 GCACACTTAGTGCTATCATAGTCAACTCGCACACTTAGTGCAACATAGTCAATC
** *
96800722 GCACACTTAGTGCTA-CATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATTC
1 GCACACTTAGTGCTATCATAGTC-AACTCGCACACTTAGTGCAACATAGTCAA-TC
* ** *
96800777 GCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTAAATC
1 GCACACTTAGTGCTATCATAGTCAACTCGCACACTTAGTGCAACATAGTCAATC
*
96800830 GCACACATAGTGCT
1 GCACACTTAGTGCT
96800844 GTACAATTTA
Statistics
Matches: 101, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
52 5 0.05
53 28 0.28
54 47 0.47
55 21 0.21
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (54 bp):
GCACACTTAGTGCTATCATAGTCAACTCGCACACTTAGTGCAACATAGTCAATC
Found at i:96800786 original size:27 final size:27
Alignment explanation
Indices: 96800694--96800842 Score: 158
Period size: 27 Copynumber: 5.6 Consensus size: 27
96800684 TTATAATCAC
* * *
96800694 TCGCACACTTAGTGCTACGTAATCAA-
1 TCGCACACTTAGTGCAACATAGTCAAT
* *
96800720 TCGCACACTTAGTGCTACATAGTCAAAC
1 TCGCACACTTAGTGCAACATAGTC-AAT
** *
96800748 TCGCACACTTAGTGCCGCATGGTCAAT
1 TCGCACACTTAGTGCAACATAGTCAAT
* * *
96800775 TCGCACACTTAGTGCATCATATTCATT
1 TCGCACACTTAGTGCAACATAGTCAAT
*
96800802 TCGCACACTTAGTGCAACATAGT-AAA
1 TCGCACACTTAGTGCAACATAGTCAAT
*
96800828 TCGCACACATAGTGC
1 TCGCACACTTAGTGC
96800843 TGTACAATTT
Statistics
Matches: 105, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
26 37 0.35
27 47 0.45
28 21 0.20
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
TCGCACACTTAGTGCAACATAGTCAAT
Found at i:96801403 original size:26 final size:26
Alignment explanation
Indices: 96801367--96801420 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
96801357 TGATGGCCGA
96801367 ATGCTTCTTTTGTTACCCAACTAATC
1 ATGCTTCTTTTGTTACCCAACTAATC
96801393 ATGCTTCTTTTGTTACCCAACTAATC
1 ATGCTTCTTTTGTTACCCAACTAATC
96801419 AT
1 AT
96801421 TCGACAATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.24, C:0.26, G:0.07, T:0.43
Consensus pattern (26 bp):
ATGCTTCTTTTGTTACCCAACTAATC
Found at i:96804119 original size:37 final size:37
Alignment explanation
Indices: 96804028--96804173 Score: 249
Period size: 37 Copynumber: 4.0 Consensus size: 37
96804018 CTTTAGCTCA
* * *
96804028 GACAAAATCTCCACACGAAGTTATCGGGTCTTACCCG
1 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
96804065 GACA-AATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
96804101 GACATAATCTTCACACGTAGTCATCGGGTCTTACCCG
1 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
96804138 GACATAATCTCCACACGTAGTCATCGGGTCTTACCC
1 GACATAATCTCCACACGTAGTCATCGGGTCTTACCC
96804174 AGAATATATT
Statistics
Matches: 104, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
36 34 0.33
37 70 0.67
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
Found at i:96804172 original size:74 final size:73
Alignment explanation
Indices: 96804028--96804173 Score: 247
Period size: 73 Copynumber: 2.0 Consensus size: 73
96804018 CTTTAGCTCA
*
96804028 GACAAAATCTCCACACGAAGTTATCGGGTCTTACCCGGACAAATCTCCACACGTAGTCATCGGGT
1 GACAAAATCTCCACACGAAGTCATCGGGTCTTACCCGGACAAATCTCCACACGTAGTCATCGGGT
96804093 CTTACCCG
66 CTTACCCG
* * *
96804101 GACATAATCTTCACACGTAGTCATCGGGTCTTACCCGGACATAATCTCCACACGTAGTCATCGGG
1 GACAAAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA-AATCTCCACACGTAGTCATCGGG
96804166 TCTTACCC
65 TCTTACCC
96804174 AGAATATATT
Statistics
Matches: 68, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
73 37 0.54
74 31 0.46
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (73 bp):
GACAAAATCTCCACACGAAGTCATCGGGTCTTACCCGGACAAATCTCCACACGTAGTCATCGGGT
CTTACCCG
Found at i:96804442 original size:47 final size:47
Alignment explanation
Indices: 96804381--96804565 Score: 280
Period size: 47 Copynumber: 3.9 Consensus size: 47
96804371 TACATATATT
* * * *
96804381 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
96804428 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
96804475 TCACATTGGCCATTTGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* **
96804522 TCACATTGGCCATTCGGCCTTGTCACATATATGCACATTCACAT
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACAT
96804566 CACAATTATC
Statistics
Matches: 125, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 125 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:96815838 original size:27 final size:27
Alignment explanation
Indices: 96815795--96816164 Score: 490
Period size: 27 Copynumber: 13.7 Consensus size: 27
96815785 CGTACCTGAA
* *
96815795 CCCTCATGTGATAAAATTATGATTTTT
1 CCCTTATGTGATAAAATGATGATTTTT
*
96815822 CCCATATGTGATAAAATGATGATTTTT
1 CCCTTATGTGATAAAATGATGATTTTT
* *
96815849 CCCTTATGTGATCAAATGATGATTTTG
1 CCCTTATGTGATAAAATGATGATTTTT
* *
96815876 CCCTCATGTGATAAAATGATGATTTTG
1 CCCTTATGTGATAAAATGATGATTTTT
* * *
96815903 CCCTCATGTGATCAAATGACT-ATTTTG
1 CCCTTATGTGATAAAATGA-TGATTTTT
*
96815930 CCCTCATGTGATAAAATGATGATTTTT
1 CCCTTATGTGATAAAATGATGATTTTT
* * *
96815957 CCCTTAGGTGATAAAATGACGATTTTG
1 CCCTTATGTGATAAAATGATGATTTTT
* *
96815984 CCCTTAAGTGATAAAATGACGATTTTT
1 CCCTTATGTGATAAAATGATGATTTTT
* * *
96816011 CCCTTATGTGATAAAATAACGATTTTG
1 CCCTTATGTGATAAAATGATGATTTTT
* *
96816038 CCCTTAGGTGATAAAATGACGATTTTT
1 CCCTTATGTGATAAAATGATGATTTTT
96816065 CCCTTATGTGATAAAATGATGATTTTT
1 CCCTTATGTGATAAAATGATGATTTTT
* *
96816092 CCCTTATGTGATAAAATAACGATTTTT
1 CCCTTATGTGATAAAATGATGATTTTT
* *
96816119 CCCTTATGTGATAAAATGAAGATTTTG
1 CCCTTATGTGATAAAATGATGATTTTT
*
96816146 CCCTTAGGTGATAAAATGA
1 CCCTTATGTGATAAAATGA
96816165 CCGAAATACC
Statistics
Matches: 310, Mismatches: 31, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
26 1 0.00
27 308 0.99
28 1 0.00
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (27 bp):
CCCTTATGTGATAAAATGATGATTTTT
Found at i:96816187 original size:27 final size:27
Alignment explanation
Indices: 96816157--96816219 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
96816147 CCTTAGGTGA
* *
96816157 TAAAATGACCGAAATACCCCTGTAGGG
1 TAAAATGACCGAAATACCCCAGTAAGG
* * *
96816184 TAAAATGACTGTAATACCTCAGTAAGG
1 TAAAATGACCGAAATACCCCAGTAAGG
96816211 TAAAATGAC
1 TAAAATGAC
96816220 AGATTTGTTC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.41, C:0.17, G:0.19, T:0.22
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCCAGTAAGG
Found at i:96816648 original size:35 final size:35
Alignment explanation
Indices: 96816608--96816700 Score: 134
Period size: 35 Copynumber: 2.7 Consensus size: 35
96816598 TACTGCACTA
96816608 ATTACTATTACTGAAATGGGCTAAAACCCAGACTG
1 ATTACTATTACTGAAATGGGCTAAAACCCAGACTG
* *
96816643 ATTACTATTACTAAAATGGGATAAAACCCAGACTG
1 ATTACTATTACTGAAATGGGCTAAAACCCAGACTG
* * *
96816678 -CTACTGTTACTGAAATAGGCTAA
1 ATTACTATTACTGAAATGGGCTAA
96816701 GGCCCAGATT
Statistics
Matches: 51, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
34 18 0.35
35 33 0.65
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (35 bp):
ATTACTATTACTGAAATGGGCTAAAACCCAGACTG
Found at i:96816707 original size:34 final size:34
Alignment explanation
Indices: 96816610--96816732 Score: 140
Period size: 34 Copynumber: 3.6 Consensus size: 34
96816600 CTGCACTAAT
*
96816610 TACTATTACTGAAATGGGCTAAAACCCAGACTGAT
1 TACTATTACTGAAATGGGCTAAAACCCAGACTG-C
* *
96816645 TACTATTACTAAAATGGGATAAAACCCAGACTGC
1 TACTATTACTGAAATGGGCTAAAACCCAGACTGC
* * ** *
96816679 TACTGTTACTGAAATAGGCTAAGGCCCAGATTGC
1 TACTATTACTGAAATGGGCTAAAACCCAGACTGC
*
96816713 CACTATTACT-AATATGGGCT
1 TACTATTACTGAA-ATGGGCT
96816733 TAGGCCCCAC
Statistics
Matches: 74, Mismatches: 13, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
33 2 0.03
34 41 0.55
35 31 0.42
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (34 bp):
TACTATTACTGAAATGGGCTAAAACCCAGACTGC
Found at i:96825767 original size:26 final size:26
Alignment explanation
Indices: 96825726--96825811 Score: 93
Period size: 26 Copynumber: 3.3 Consensus size: 26
96825716 CATTGAGGCA
*
96825726 TAGCAGGCTTTTTGCTGGTGTATTTT
1 TAGCAGGCTTTGTGCTGGTGTATTTT
* * *
96825752 TAGCAGGCTTCGTGCTAGTGTATATT
1 TAGCAGGCTTTGTGCTGGTGTATTTT
* * *
96825778 TAGAAAGCTTTGTGCTGGTGT-TGTAT
1 TAGCAGGCTTTGTGCTGGTGTAT-TTT
96825804 TAGCAGGC
1 TAGCAGGC
96825812 ACTACGTGTT
Statistics
Matches: 47, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
25 1 0.02
26 46 0.98
ACGTcount: A:0.17, C:0.13, G:0.29, T:0.41
Consensus pattern (26 bp):
TAGCAGGCTTTGTGCTGGTGTATTTT
Found at i:96825855 original size:34 final size:34
Alignment explanation
Indices: 96825811--96825878 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
96825801 TATTAGCAGG
96825811 CACTACGTGTTAGTGTTTTATTTAGAATGTACTA
1 CACTACGTGTTAGTGTTTTATTTAGAATGTACTA
* *
96825845 CACTATGTGTTAGTGTTTTATTTAGCATGTACTA
1 CACTACGTGTTAGTGTTTTATTTAGAATGTACTA
96825879 TGTACCGATG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.25, C:0.12, G:0.18, T:0.46
Consensus pattern (34 bp):
CACTACGTGTTAGTGTTTTATTTAGAATGTACTA
Found at i:96825879 original size:29 final size:29
Alignment explanation
Indices: 96825795--96825881 Score: 77
Period size: 34 Copynumber: 2.9 Consensus size: 29
96825785 CTTTGTGCTG
* * * *
96825795 GTGTTGTA-TTAGCAGGCACTACGTGTTA
1 GTGTTTTATTTAGCATGTACTATGTGTTA
*
96825823 GTGTTTTATTTAGAATGTACTACACTATGTGTTA
1 GTGTTTTATTTAGCATG---T--ACTATGTGTTA
96825857 GTGTTTTATTTAGCATGTACTATGT
1 GTGTTTTATTTAGCATGTACTATGT
96825882 ACCGATGATG
Statistics
Matches: 47, Mismatches: 6, Indels: 11
0.73 0.09 0.17
Matches are distributed among these distances:
28 7 0.15
29 13 0.28
31 1 0.02
34 26 0.55
ACGTcount: A:0.23, C:0.10, G:0.22, T:0.45
Consensus pattern (29 bp):
GTGTTTTATTTAGCATGTACTATGTGTTA
Found at i:96830069 original size:20 final size:20
Alignment explanation
Indices: 96830044--96830088 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
96830034 CTAATGGTAC
96830044 AGGCAATTAACCAAGTCTAA
1 AGGCAATTAACCAAGTCTAA
96830064 AGGCAATTAACCAAGTCTAA
1 AGGCAATTAACCAAGTCTAA
96830084 AGGCA
1 AGGCA
96830089 TAAAGTATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.44, C:0.20, G:0.18, T:0.18
Consensus pattern (20 bp):
AGGCAATTAACCAAGTCTAA
Found at i:96846074 original size:13 final size:13
Alignment explanation
Indices: 96846056--96846084 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
96846046 AATTTTAGGT
96846056 CATACCACACGCC
1 CATACCACACGCC
96846069 CATACCACACGCC
1 CATACCACACGCC
96846082 CAT
1 CAT
96846085 GGGGGTGATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.52, G:0.07, T:0.10
Consensus pattern (13 bp):
CATACCACACGCC
Found at i:96852742 original size:26 final size:26
Alignment explanation
Indices: 96852713--96852769 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
96852703 GCACTCTCTC
96852713 GAGCCATATAA-CAGGAAACTCACAAA
1 GAGCCAT-TAATCAGGAAACTCACAAA
*
96852739 GAGCCATTAATCAGGAAGCTCACAAA
1 GAGCCATTAATCAGGAAACTCACAAA
96852765 GAGCC
1 GAGCC
96852770 TATCAAGAAG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 3 0.10
26 26 0.90
ACGTcount: A:0.44, C:0.25, G:0.19, T:0.12
Consensus pattern (26 bp):
GAGCCATTAATCAGGAAACTCACAAA
Found at i:96852779 original size:23 final size:25
Alignment explanation
Indices: 96852713--96852781 Score: 70
Period size: 26 Copynumber: 2.8 Consensus size: 25
96852703 GCACTCTCTC
* * *
96852713 GAGCCATATAACAGGAAACTCACAAA
1 GAGCCATA-ATCAAGAAGCTCACAAA
*
96852739 GAGCCATTAATCAGGAAGCTCACAAA
1 GAGCCA-TAATCAAGAAGCTCACAAA
96852765 GAGCC-T-ATCAAGAAGCT
1 GAGCCATAATCAAGAAGCT
96852782 TGTCCAGCTA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
23 10 0.26
24 1 0.03
26 26 0.67
27 2 0.05
ACGTcount: A:0.43, C:0.23, G:0.19, T:0.14
Consensus pattern (25 bp):
GAGCCATAATCAAGAAGCTCACAAA
Found at i:96854708 original size:21 final size:21
Alignment explanation
Indices: 96854672--96854713 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
96854662 TGTATGGAAT
*
96854672 GTTAATTTAATGGTATCAAAG
1 GTTAATTTAATAGTATCAAAG
*
96854693 GTTAATTTACTAGTATCAAAG
1 GTTAATTTAATAGTATCAAAG
96854714 CTACAAATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.38, C:0.07, G:0.17, T:0.38
Consensus pattern (21 bp):
GTTAATTTAATAGTATCAAAG
Found at i:96858532 original size:46 final size:46
Alignment explanation
Indices: 96858479--96858653 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
96858469 TGTAACCCGC
* *
96858479 CCATAAGTGAATTCGGACTCAACTCAATGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
*
96858525 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCACAT
* * * * *
96858575 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
*
96858618 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
96858654 ATGCCCAAAT
Statistics
Matches: 110, Mismatches: 8, Indels: 22
0.79 0.06 0.16
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 1 0.01
46 63 0.57
47 26 0.24
48 1 0.01
49 1 0.01
50 6 0.05
51 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
Found at i:96858561 original size:20 final size:20
Alignment explanation
Indices: 96858491--96858561 Score: 54
Period size: 20 Copynumber: 3.2 Consensus size: 20
96858481 ATAAGTGAAT
96858491 TCGGACTCAACTCAATGAGC
1 TCGGACTCAACTCAATGAGC
* *
96858511 TCGGGCGTTC-ACATCCATAAGTGAAC
1 TCGGAC--TCAAC-T-C--AA-TGAGC
96858537 TCGGACTCAACTCAATGAGC
1 TCGGACTCAACTCAATGAGC
96858557 TCGGA
1 TCGGA
96858562 TGCCTAGTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 16
0.66 0.07 0.27
Matches are distributed among these distances:
20 14 0.36
21 4 0.10
22 3 0.08
23 2 0.05
24 3 0.08
25 4 0.10
26 9 0.23
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (20 bp):
TCGGACTCAACTCAATGAGC
Found at i:96858673 original size:46 final size:44
Alignment explanation
Indices: 96858484--96858673 Score: 109
Period size: 46 Copynumber: 4.1 Consensus size: 44
96858474 CCCGCCCATA
* * * ** ** *
96858484 AGTGAATTCGGACTCAACTCAATGAGCTCGGGCGTTCACATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCC-T
* * *
96858529 AAGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * *
96858579 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATCC-T
96858622 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
96858669 AGTGA
1 AGTGA
96858674 CATGTCACTT
Statistics
Matches: 113, Mismatches: 16, Indels: 30
0.71 0.10 0.19
Matches are distributed among these distances:
42 1 0.01
43 4 0.04
44 4 0.04
46 65 0.58
47 27 0.24
48 4 0.04
49 3 0.03
50 4 0.04
51 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:96861513 original size:21 final size:22
Alignment explanation
Indices: 96861489--96861529 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
96861479 AAGATGTAAT
96861489 GATTACTA-TAAAATA-AAATAA
1 GATTA-TACTAAAATATAAATAA
96861510 GATTATACTAAAATATAAAT
1 GATTATACTAAAATATAAAT
96861530 TTATTAAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 2 0.11
21 12 0.67
22 4 0.22
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.32
Consensus pattern (22 bp):
GATTATACTAAAATATAAATAA
Found at i:96861932 original size:5 final size:5
Alignment explanation
Indices: 96861924--96861955 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
96861914 TGAATTTCAA
96861924 AAATT AAATT AAATT AAATT AAATT AAATT AA
1 AAATT AAATT AAATT AAATT AAATT AAATT AA
96861956 TTGTAGTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
AAATT
Found at i:96863725 original size:13 final size:13
Alignment explanation
Indices: 96863707--96863731 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
96863697 CACTATCAAC
96863707 AGGATCAAGGATT
1 AGGATCAAGGATT
96863720 AGGATCAAGGAT
1 AGGATCAAGGAT
96863732 ACTTCCAGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.32, T:0.20
Consensus pattern (13 bp):
AGGATCAAGGATT
Found at i:96866698 original size:30 final size:29
Alignment explanation
Indices: 96866651--96866731 Score: 76
Period size: 29 Copynumber: 2.8 Consensus size: 29
96866641 AATGATAAAA
*
96866651 AATAACAATTATA-AAATATATTAAATTTT
1 AATAAAAATTA-AGAAATATATTAAATTTT
**
96866680 AATAAAAATATAAGAAATAT-TTATTTTTT
1 AATAAAAAT-TAAGAAATATATTAAATTTT
* * *
96866709 ATTAAAAATTAGGAAAAATATTA
1 AATAAAAATTAAGAAATATATTA
96866732 TAAATTATAT
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
28 8 0.19
29 27 0.63
30 8 0.19
ACGTcount: A:0.56, C:0.01, G:0.04, T:0.40
Consensus pattern (29 bp):
AATAAAAATTAAGAAATATATTAAATTTT
Found at i:96867134 original size:26 final size:26
Alignment explanation
Indices: 96867105--96867154 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
96867095 TTTTTATATT
96867105 TTTATTAAAGTTTAATTTTTATAACA
1 TTTATTAAAGTTTAATTTTTATAACA
* ** *
96867131 TTTATTGATTTTTATTTTTTATAA
1 TTTATTAAAGTTTAATTTTTATAA
96867155 TTTTTTTGTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (26 bp):
TTTATTAAAGTTTAATTTTTATAACA
Found at i:96867746 original size:26 final size:25
Alignment explanation
Indices: 96867695--96867744 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
96867685 TACAACCAAA
*
96867695 AAATCTTTTTAAAAGTTTATTTTTT
1 AAATCTTTTTAAAAGATTATTTTTT
96867720 AAATCTTTTTAAAAGATTATTTTTT
1 AAATCTTTTTAAAAGATTATTTTTT
96867745 TACTTTCAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.58
Consensus pattern (25 bp):
AAATCTTTTTAAAAGATTATTTTTT
Found at i:96867805 original size:26 final size:26
Alignment explanation
Indices: 96867777--96867827 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
96867767 AATTTGTGAG
* *
96867777 AAATTTAAAATAATTTAAAATATATGA
1 AAATTTAAAA-AATTAAAAAAATATGA
*
96867804 AAATTTTAAAAATTAAAAAAATAT
1 AAATTTAAAAAATTAAAAAAATAT
96867828 TATTTTCTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 12 0.57
27 9 0.43
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (26 bp):
AAATTTAAAAAATTAAAAAAATATGA
Found at i:96872149 original size:46 final size:46
Alignment explanation
Indices: 96872097--96872268 Score: 170
Period size: 46 Copynumber: 3.7 Consensus size: 46
96872087 TGGGCATCCG
* *
96872097 AACTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCA
1 AACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGTCCA
* * * * * * * *
96872143 AACTCGTTGAGTTGAGTCCAAGTTC-GTGAAATGTA-ACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCAAGTTCACT--TATGGATGCGA-ACGTCCA
*
96872190 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTA
1 AACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGTCC-A
* *
96872236 AGCTCGTTGAGTTGAGTCCAAGTTCGCTTATGG
1 AACTCGTTGAGTTGAGTCCAAGTTCACTTATGG
96872269 TCGGGTTACA
Statistics
Matches: 98, Mismatches: 22, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
45 3 0.03
46 60 0.61
47 34 0.35
48 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGTCCA
Found at i:96872199 original size:93 final size:93
Alignment explanation
Indices: 96872089--96872261 Score: 312
Period size: 93 Copynumber: 1.9 Consensus size: 93
96872079 CGGATATTTG
*
96872089 GGCATCCGAACTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-AAACTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTAAACTCGTTGA
96872153 GTTGAGTCCAAGTTCGTGAAATGTAACTA
65 GTTGAGTCCAAGTTCGTGAAATGTAACTA
*
96872182 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTAAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTAAACTCGTTGAG
96872247 TTGAGTCCAAGTTCG
66 TTGAGTCCAAGTTCG
96872262 CTTATGGTCG
Statistics
Matches: 77, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
92 2 0.03
93 75 0.97
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTAAACTCGTTGAG
TTGAGTCCAAGTTCGTGAAATGTAACTA
Found at i:96874163 original size:39 final size:39
Alignment explanation
Indices: 96874112--96874190 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
96874102 ACCTGAAGAG
96874112 TGCTTGAAGTGTGCTATATCATTGCTGAGGGATTCGGCT
1 TGCTTGAAGTGTGCTATATCATTGCTGAGGGATTCGGCT
96874151 TGCTTGAAGTGTGCTATATCATTGCTGAGGGATTCGGCT
1 TGCTTGAAGTGTGCTATATCATTGCTGAGGGATTCGGCT
96874190 T
1 T
96874191 ATCATTGGTG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.18, C:0.15, G:0.30, T:0.37
Consensus pattern (39 bp):
TGCTTGAAGTGTGCTATATCATTGCTGAGGGATTCGGCT
Found at i:96878368 original size:27 final size:27
Alignment explanation
Indices: 96878337--96878514 Score: 198
Period size: 27 Copynumber: 6.6 Consensus size: 27
96878327 TAAATTGTAC
96878337 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
96878364 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
96878390 ATGCACTAAGTGTGCGAATTGACCATG-
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
96878417 CGACACTAAGTGTGCGAGTTTGACTATGT
1 AG-CACTAAGTGTGCGA-TTTGACTATGT
* *
96878446 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
96878473 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
96878500 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
96878515 GACTCAATAT
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
26 1 0.01
27 105 0.81
28 22 0.17
29 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:96878451 original size:82 final size:81
Alignment explanation
Indices: 96878339--96878493 Score: 231
Period size: 82 Copynumber: 1.9 Consensus size: 81
96878329 AATTGTACAG
* *
96878339 CACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTGT
1 CACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTGT
96878403 GCGAATTGACCATGCGA
65 GCGAATTGACCATGCGA
** *
96878420 CACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGT
1 CACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
*
96878485 GCGAGTTGA
65 GCGAATTGA
96878494 TTATATAGCA
Statistics
Matches: 66, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 14 0.21
82 51 0.77
83 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
CACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGTG
CGAATTGACCATGCGA
Found at i:96880753 original size:43 final size:43
Alignment explanation
Indices: 96880702--96880938 Score: 368
Period size: 43 Copynumber: 5.5 Consensus size: 43
96880692 CAGCATTACT
* * **
96880702 CCTGCTAGGCTCGAAGCCCAATATTAAATCACTAGCATTATAG
1 CCTGCTAGGCTCGAAGCCCGATATTAACTCACCGGCATTATAG
* *
96880745 CCTGCTAGGTTCGAAGCCCGATATTAACTCATCGGCATTATAG
1 CCTGCTAGGCTCGAAGCCCGATATTAACTCACCGGCATTATAG
*
96880788 CCTGCTAGGCTCAAAGCCCGATATTAACTCACCGGCATTATAG
1 CCTGCTAGGCTCGAAGCCCGATATTAACTCACCGGCATTATAG
*
96880831 CATGCTAGGCTCGAAGCCCGATATTAACTCACCGGCATTATAG
1 CCTGCTAGGCTCGAAGCCCGATATTAACTCACCGGCATTATAG
*
96880874 ACAT-CTAGGCTCGAAGCCCGATATTAACTCACCGGCATTATAG
1 -CCTGCTAGGCTCGAAGCCCGATATTAACTCACCGGCATTATAG
96880917 CCTGCTAGGCTCGAAGGCCCGA
1 CCTGCTAGGCTCGAA-GCCCGA
96880939 ATAGTACCGT
Statistics
Matches: 179, Mismatches: 12, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
42 2 0.01
43 168 0.94
44 9 0.05
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (43 bp):
CCTGCTAGGCTCGAAGCCCGATATTAACTCACCGGCATTATAG
Found at i:96884498 original size:49 final size:49
Alignment explanation
Indices: 96884442--96884756 Score: 520
Period size: 47 Copynumber: 6.6 Consensus size: 49
96884432 TATTTGAATA
96884442 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
96884491 AATGTGAAAGTGTATATATATGTGATAAAGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
96884540 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
96884587 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
96884636 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
96884683 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
96884730 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
96884757 TCCCGAAGGG
Statistics
Matches: 254, Mismatches: 8, Indels: 10
0.93 0.03 0.04
Matches are distributed among these distances:
47 147 0.58
48 1 0.00
49 106 0.42
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:96884575 original size:96 final size:96
Alignment explanation
Indices: 96884442--96884756 Score: 535
Period size: 96 Copynumber: 3.3 Consensus size: 96
96884432 TATTTGAATA
96884442 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
96884507 TATATGTGATAAAGCCTAATGGCCAATGTGATG
64 TATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
96884540 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
96884605 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
96884636 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
96884699 TATGTGATAAGGCCTAATAGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* *
96884730 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
96884757 TCCCGAAGGG
Statistics
Matches: 208, Mismatches: 9, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
94 59 0.28
96 137 0.66
98 12 0.06
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:96892557 original size:43 final size:43
Alignment explanation
Indices: 96892489--96892610 Score: 185
Period size: 43 Copynumber: 2.8 Consensus size: 43
96892479 CTAAACTCAT
*
96892489 TCACCGGCATTACT-G-CTGCTAGGCTCGAAGCCTGATATTAAC
1 TCACCGGCATT-CTAGCCTGCTAGGCTCGAAGCCCGATATTAAC
96892531 TCACCGGCATTCTAGCCTGCTAGGCTCGAAGCCCGATATTAAC
1 TCACCGGCATTCTAGCCTGCTAGGCTCGAAGCCCGATATTAAC
* *
96892574 TCACCGACATTATAGCCTGCTAGGCTCGAAGGCCCGA
1 TCACCGGCATTCTAGCCTGCTAGGCTCGAA-GCCCGA
96892611 ATAGTTCCGT
Statistics
Matches: 74, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
41 2 0.03
42 12 0.16
43 54 0.73
44 6 0.08
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.23
Consensus pattern (43 bp):
TCACCGGCATTCTAGCCTGCTAGGCTCGAAGCCCGATATTAAC
Found at i:96894682 original size:46 final size:46
Alignment explanation
Indices: 96894612--96894830 Score: 253
Period size: 46 Copynumber: 4.7 Consensus size: 46
96894602 TTGGGCATCT
*
96894612 GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACGTTC
1 GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACGTCC
* ** *
96894658 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGTCT
1 GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACGTCC
* * * * * *
96894704 GAACTCATTGAGTTGAGTCTGAGTTC-GTGAAATGTA-ACTAAGCATCC
1 GAACTCGTTGAGTTGAGTCTGAGTTCACT--TATGGATACGAA-CGTCC
* *
96894751 GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACGTCC
* * *
96894797 GAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGG
96894831 TCGGGTTACA
Statistics
Matches: 142, Mismatches: 26, Indels: 10
0.80 0.15 0.06
Matches are distributed among these distances:
45 1 0.01
46 105 0.74
47 35 0.25
48 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATACGAACGTCC
Found at i:96898018 original size:26 final size:26
Alignment explanation
Indices: 96897989--96898053 Score: 71
Period size: 26 Copynumber: 2.5 Consensus size: 26
96897979 TTTTGAGAAA
96897989 TTAAAAAAATTAAAAAT-TAAAATATT
1 TTAAAAAAATTAAAAATATAAAA-ATT
* *
96898015 TT-AAAATATATGAAAATATAAAAATT
1 TTAAAAAAAT-TAAAAATATAAAAATT
96898041 TTAAAAAATATTA
1 TTAAAAAA-ATTA
96898054 TTTTCTTAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
25 6 0.19
26 13 0.42
27 10 0.32
28 2 0.06
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (26 bp):
TTAAAAAAATTAAAAATATAAAAATT
Found at i:96898892 original size:21 final size:22
Alignment explanation
Indices: 96898850--96898892 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
96898840 AAAAAGTTAT
*
96898850 TTTATAATAATATTTTATATAA
1 TTTATAATAATATTTTACATAA
96898872 TTTATAATTAA-A-TTTACATAA
1 TTTATAA-TAATATTTTACATAA
96898893 AAATATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 8 0.42
22 8 0.42
23 3 0.16
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (22 bp):
TTTATAATAATATTTTACATAA
Found at i:96902353 original size:27 final size:27
Alignment explanation
Indices: 96902322--96902499 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
96902312 TAAATTGTAC
96902322 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
96902349 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
96902375 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
96902403 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
96902431 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
96902458 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
96902485 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
96902500 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:96902436 original size:82 final size:81
Alignment explanation
Indices: 96902323--96902478 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
96902313 AAATTGTACA
* *
96902323 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
96902387 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
96902404 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
96902469 TGCGAGTTGA
65 TGCGAATTGA
96902479 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:96902490 original size:82 final size:81
Alignment explanation
Indices: 96902319--96902499 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
96902309 GATTAAATTG
* *
96902319 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
96902384 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
96902400 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
96902464 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
96902482 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
96902500 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:96910410 original size:27 final size:27
Alignment explanation
Indices: 96910376--96910499 Score: 149
Period size: 27 Copynumber: 4.6 Consensus size: 27
96910366 TAAATTGTAC
* * *
96910376 AGCACTAAGTGTGCGAATTGACCATGC
1 AGCACTAAGTGTGCGATTTGACTATGT
*
96910403 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
96910431 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
96910458 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
96910485 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
96910500 GACTCAATAT
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
27 62 0.73
28 23 0.27
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:96910438 original size:55 final size:54
Alignment explanation
Indices: 96910376--96910499 Score: 158
Period size: 55 Copynumber: 2.3 Consensus size: 54
96910366 TAAATTGTAC
* * *
96910376 AGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACCACGCAGCACTAAGTGTGCGAG-TTGACTATAT
* ** * *
96910431 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACCACGCAGCACTAAGTGTGCGAGTTGACTATAT
*
96910485 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
96910500 GACTCAATAT
Statistics
Matches: 60, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
54 22 0.37
55 38 0.63
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (54 bp):
AGCACTAAGTGTGCGAATTGACCACGCAGCACTAAGTGTGCGAGTTGACTATAT
Found at i:96913211 original size:122 final size:122
Alignment explanation
Indices: 96912994--96913239 Score: 483
Period size: 122 Copynumber: 2.0 Consensus size: 122
96912984 TAGTTTGCTC
96912994 TCTCCATTTCTACCCATATTTCATGCTAGGGTTCATGTTAAAAAATTTACCCATGCATGAGTTAT
1 TCTCCATTTCTACCCATATTTCATGCTAGGGTTCATGTTAAAAAATTTACCCATGCATGAGTTAT
96913059 TGGTATTTTGATGGATTATGGAAGAATATGAAAGATAAATGTGTGTTAAACATCTTT
66 TGGTATTTTGATGGATTATGGAAGAATATGAAAGATAAATGTGTGTTAAACATCTTT
*
96913116 TCTCCATTTCTACCCATATTTCATGCTAGGGTTCATGTTCAAAAATTTACCCATGCATGAGTTAT
1 TCTCCATTTCTACCCATATTTCATGCTAGGGTTCATGTTAAAAAATTTACCCATGCATGAGTTAT
96913181 TGGTATTTTGATGGATTATGGAAGAATATGAAAGATAAATGTGTGTTAAACATCTTT
66 TGGTATTTTGATGGATTATGGAAGAATATGAAAGATAAATGTGTGTTAAACATCTTT
96913238 TC
1 TC
96913240 CAGGCTGGTT
Statistics
Matches: 123, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
122 123 1.00
ACGTcount: A:0.30, C:0.14, G:0.17, T:0.39
Consensus pattern (122 bp):
TCTCCATTTCTACCCATATTTCATGCTAGGGTTCATGTTAAAAAATTTACCCATGCATGAGTTAT
TGGTATTTTGATGGATTATGGAAGAATATGAAAGATAAATGTGTGTTAAACATCTTT
Found at i:96924544 original size:18 final size:17
Alignment explanation
Indices: 96924521--96924563 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
96924511 TTTGAGTCCC
*
96924521 TTTATTTTAATTTTAATT
1 TTTATTTTAA-TTTAAAT
*
96924539 TTTATTTTTATTTAAAT
1 TTTATTTTAATTTAAAT
96924556 TTTATTTT
1 TTTATTTT
96924564 CTCTTATTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 14 0.61
18 9 0.39
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTATTTTAATTTAAAT
Found at i:96924545 original size:12 final size:12
Alignment explanation
Indices: 96924521--96924563 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
96924511 TTTGAGTCCC
96924521 TTTATTTTAATT
1 TTTATTTTAATT
* *
96924533 TTAATTTTTATT
1 TTTATTTTAATT
*
96924545 TTTA-TTTAAAT
1 TTTATTTTAATT
96924556 TTTATTTT
1 TTTATTTT
96924564 CTCTTATTTA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
11 9 0.36
12 16 0.64
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTATTTTAATT
Found at i:96925573 original size:4 final size:4
Alignment explanation
Indices: 96925566--96925592 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
96925556 TGAAAAAAAA
96925566 ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATA
96925593 TTAGTATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.52, C:0.22, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:96929948 original size:32 final size:32
Alignment explanation
Indices: 96929906--96930017 Score: 99
Period size: 32 Copynumber: 3.6 Consensus size: 32
96929896 AGCTTTGGAT
96929906 AGGAAAGCCTTTGTGGCAAGTACTAAACGTAA
1 AGGAAAGCCTTTGTGGCAAGTACTAAACGTAA
* * * *
96929938 AGGAATGCCTTTGTGGCAA--A--AATCTGGAT
1 AGGAAAGCCTTTGTGGCAAGTACTAAAC-GTAA
* * * *
96929967 AGGAAAGCCTCTGTAGCAAGTACTGAATGTAA
1 AGGAAAGCCTTTGTGGCAAGTACTAAACGTAA
96929999 A-GAAATGCCTTTGTGGCAA
1 AGGAAA-GCCTTTGTGGCAA
96930018 AACTCTAGAC
Statistics
Matches: 60, Mismatches: 14, Indels: 12
0.70 0.16 0.14
Matches are distributed among these distances:
28 3 0.05
29 18 0.30
30 1 0.02
31 5 0.08
32 32 0.53
33 1 0.02
ACGTcount: A:0.35, C:0.15, G:0.26, T:0.24
Consensus pattern (32 bp):
AGGAAAGCCTTTGTGGCAAGTACTAAACGTAA
Found at i:96929954 original size:61 final size:61
Alignment explanation
Indices: 96929886--96930116 Score: 293
Period size: 61 Copynumber: 3.8 Consensus size: 61
96929876 TAAGAATGTG
* * * *
96929886 TTTGTGGCAAAGCTTTGGATAGGAAAGCCTTTGTGGCAAGTACTAAACGTAAAGGAATGCC
1 TTTGTGGCAAAACTCTGGATAGGAAAGCCTTTGTGGCAAGTACTGAATGTAAAGGAATGCC
* * * *
96929947 TTTGTGGCAAAAATCTGGATAGGAAAGCCTCTGTAGCAAGTACTGAATGTAAAGAAATGCC
1 TTTGTGGCAAAACTCTGGATAGGAAAGCCTTTGTGGCAAGTACTGAATGTAAAGGAATGCC
* * * * * *
96930008 TTTGTGGCAAAACTCTAGACAAGAAAACCTTTGTGGCAAGCATTGAATGTAAAGGAATGCC
1 TTTGTGGCAAAACTCTGGATAGGAAAGCCTTTGTGGCAAGTACTGAATGTAAAGGAATGCC
* * *
96930069 TTCGTGGAAAAACTCTGGATAGGAAAGCCTTTGTCGCGAA-TACTGAAT
1 TTTGTGGCAAAACTCTGGATAGGAAAGCCTTTGTGGC-AAGTACTGAAT
96930117 CATGGCGCAA
Statistics
Matches: 142, Mismatches: 27, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
61 140 0.99
62 2 0.01
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.26
Consensus pattern (61 bp):
TTTGTGGCAAAACTCTGGATAGGAAAGCCTTTGTGGCAAGTACTGAATGTAAAGGAATGCC
Found at i:96939790 original size:17 final size:18
Alignment explanation
Indices: 96939764--96939797 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
96939754 TTTTTGTTTA
96939764 AATAAATTAATA-GCATT
1 AATAAATTAATATGCATT
*
96939781 AATAATTTAATATGCAT
1 AATAAATTAATATGCAT
96939798 ATATTTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (18 bp):
AATAAATTAATATGCATT
Found at i:96947961 original size:43 final size:43
Alignment explanation
Indices: 96947900--96948103 Score: 345
Period size: 43 Copynumber: 4.7 Consensus size: 43
96947890 GAAAAAATGT
*
96947900 CGCTAAAGAACATGACCTTTAGCGGCGCTTTTGCCACAAACGC
1 CGCTAAAGAACATGACCTTTAGCGGCGCTTTTACCACAAACGC
*
96947943 CGCTAAAGAACATGACCTTTAGCGGCGCTTTCACCACAAACGC
1 CGCTAAAGAACATGACCTTTAGCGGCGCTTTTACCACAAACGC
*
96947986 TGCTAAAGAACATGACCTTTAGCGGCGCTTTTACCACAAACGC
1 CGCTAAAGAACATGACCTTTAGCGGCGCTTTTACCACAAACGC
* *
96948029 CACTAAAGAACATGACCTTTAGCGGCGCTCTTACCACAAACGC
1 CGCTAAAGAACATGACCTTTAGCGGCGCTTTTACCACAAACGC
* *
96948072 CGCTAAAGAACAAGTCCTTTAGCGGCGCTTTT
1 CGCTAAAGAACATGACCTTTAGCGGCGCTTTT
96948104 TGTCACAAAT
Statistics
Matches: 150, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 150 1.00
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (43 bp):
CGCTAAAGAACATGACCTTTAGCGGCGCTTTTACCACAAACGC
Found at i:96949642 original size:23 final size:23
Alignment explanation
Indices: 96949593--96949642 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
96949583 ACCCCATGCA
*
96949593 ATGCAACGTAATATTATACATGG
1 ATGCAACATAATATTATACATGG
96949616 ATGCAACATACATA-TA-ACATGG
1 ATGCAACATA-ATATTATACATGG
96949638 CATGC
1 -ATGC
96949643 TCAAATACAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
22 6 0.25
23 15 0.62
24 3 0.12
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.26
Consensus pattern (23 bp):
ATGCAACATAATATTATACATGG
Found at i:96949723 original size:27 final size:26
Alignment explanation
Indices: 96949677--96949766 Score: 101
Period size: 27 Copynumber: 3.3 Consensus size: 26
96949667 GAACAAATCT
* *
96949677 GTCATTTTACCTTACTGGGGTATTAC
1 GTCATTTTACCCTACTGGGGTATTTC
*
96949703 AGTCATTTTACCCTACAGGGGTATTTC
1 -GTCATTTTACCCTACTGGGGTATTTC
*
96949730 GATCATTCTACCCTA-TGGAGGTATTTC
1 G-TCATTTTACCCTACTGG-GGTATTTC
96949757 GGTCATTTTA
1 -GTCATTTTA
96949767 TTACATAAGG
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
26 3 0.06
27 50 0.93
28 1 0.02
ACGTcount: A:0.21, C:0.20, G:0.19, T:0.40
Consensus pattern (26 bp):
GTCATTTTACCCTACTGGGGTATTTC
Found at i:96949788 original size:27 final size:27
Alignment explanation
Indices: 96949758--96950376 Score: 812
Period size: 27 Copynumber: 22.7 Consensus size: 27
96949748 AGGTATTTCG
* * *
96949758 GTCATTTTATTACATAAGGGAAAAATT
1 GTCATTTTATCACATAAGGGCAAAATC
* *
96949785 GTCATTTTATCACATAAGAGCAAAATT
1 GTCATTTTATCACATAAGGGCAAAATC
* *
96949812 GTCATTTTATCATATAAGGG-AAAATT
1 GTCATTTTATCACATAAGGGCAAAATC
*
96949838 GCCATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
96949865 GTCATTTTATCACATGAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* * * *
96949892 ATCATTTTATAACATGAGCGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
96949919 ATCATTTTATCACATAAAGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
96949946 GTCATTTTATCACATGAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
96949973 GTCATTTTATCACATGAA-GGAAAAATC
1 GTCATTTTATCACAT-AAGGGCAAAATC
96950000 GTCATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* * *
96950027 GTCATTTTATCACATGAGGGTAAAATT
1 GTCATTTTATCACATAAGGGCAAAATC
*
96950054 GTCA-TTTATCACATGAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
96950080 GTCATTTTATCACATAAGGGTAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
96950107 GTCATTTTATCACATGAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
96950134 ATCATTTTATCACATAAGGGCAAAATT
1 GTCATTTTATCACATAAGGGCAAAATC
*
96950161 GTCATTTTATCACATAAGGGAAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
96950188 ATCATTTTATCACATATCACATGAGGGAAAAATC
1 GTCATTTTATCAC--AT---A--AGGGCAAAATC
* *
96950222 ATCATTTGATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
96950249 ATCATTTTATCACATGAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
96950276 GTCATTTTATCACATGAGGGAAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
96950303 GTCATTTTATCACATGAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
96950330 ATCATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
96950357 ATCATTTTATCACATAAGGG
1 GTCATTTTATCACATAAGGG
96950377 TTCAGGTACC
Statistics
Matches: 533, Mismatches: 48, Indels: 22
0.88 0.08 0.04
Matches are distributed among these distances:
26 50 0.09
27 453 0.85
28 1 0.00
29 3 0.01
32 3 0.01
34 23 0.04
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.31
Consensus pattern (27 bp):
GTCATTTTATCACATAAGGGCAAAATC
Found at i:96950215 original size:34 final size:34
Alignment explanation
Indices: 96950168--96950237 Score: 122
Period size: 34 Copynumber: 2.1 Consensus size: 34
96950158 ATTGTCATTT
*
96950168 TATCACATAAGGGAAAAATCATCATTTTATCACA
1 TATCACATAAGGGAAAAATCATCATTTGATCACA
*
96950202 TATCACATGAGGGAAAAATCATCATTTGATCACA
1 TATCACATAAGGGAAAAATCATCATTTGATCACA
96950236 TA
1 TA
96950238 AGGGCAAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.43, C:0.17, G:0.11, T:0.29
Consensus pattern (34 bp):
TATCACATAAGGGAAAAATCATCATTTGATCACA
Found at i:96952370 original size:13 final size:14
Alignment explanation
Indices: 96952344--96952372 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
96952334 ACTAATGACA
96952344 AATTAAACCATTAT
1 AATTAAACCATTAT
96952358 AATTAAA-CATTAT
1 AATTAAACCATTAT
96952371 AA
1 AA
96952373 ATATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:96955676 original size:12 final size:12
Alignment explanation
Indices: 96955661--96955686 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
96955651 ATCATCCTCT
96955661 TCATCAGATTCA
1 TCATCAGATTCA
96955673 TCATCAGATTCA
1 TCATCAGATTCA
96955685 TC
1 TC
96955687 CCTCGATCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.35
Consensus pattern (12 bp):
TCATCAGATTCA
Found at i:96956877 original size:49 final size:47
Alignment explanation
Indices: 96956752--96957034 Score: 431
Period size: 47 Copynumber: 5.9 Consensus size: 47
96956742 CCCTTCGGGA
* * * * * *
96956752 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
96956799 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
96956846 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
96956895 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
96956942 CTTATCACATATATATACACTTTCACATTCATCACATCGACTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
96956991 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
96957035 CGCCATACTA
Statistics
Matches: 218, Mismatches: 14, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
47 125 0.57
49 93 0.43
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:96956914 original size:96 final size:96
Alignment explanation
Indices: 96956752--96957034 Score: 462
Period size: 96 Copynumber: 3.0 Consensus size: 96
96956742 CCCTTCGGGA
* * * * * * *
96956752 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
96956815 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
96956846 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
96956911 ACTTTCACATTCATCACATCGACCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
96956942 CTTATCACATATATATACACTTTCACATTCATCACATCGACTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
96957007 ACTTTCACATTCATCACATCGGCCATTA
66 ACTTTCACATTCATCACATCGGCCATTA
96957035 CGCCATACTA
Statistics
Matches: 176, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
94 10 0.06
95 1 0.01
96 165 0.94
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:96960606 original size:9 final size:9
Alignment explanation
Indices: 96960584--96960679 Score: 101
Period size: 9 Copynumber: 11.0 Consensus size: 9
96960574 TTGATATATA
96960584 TAAGTTAT-
1 TAAGTTATG
96960592 TAAGTTATG
1 TAAGTTATG
96960601 TAAGTTATG
1 TAAGTTATG
*
96960610 TGAGTTATG
1 TAAGTTATG
96960619 TAAGTTATG
1 TAAGTTATG
* * *
96960628 ATATGATATA
1 -TAAGTTATG
*
96960638 T-ATTTATG
1 TAAGTTATG
96960646 T-A-TTATG
1 TAAGTTATG
96960653 TAAGTTATG
1 TAAGTTATG
*
96960662 TAAATTATG
1 TAAGTTATG
96960671 TAAGTTATG
1 TAAGTTATG
96960680 AAATTTAAAC
Statistics
Matches: 73, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
7 6 0.08
8 14 0.19
9 47 0.64
10 6 0.08
ACGTcount: A:0.34, C:0.00, G:0.19, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:96960817 original size:20 final size:20
Alignment explanation
Indices: 96960793--96960831 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
96960783 TCTGTTTTGG
96960793 TTATA-ATATGTTT-TGAAT
1 TTATATATATGTTTATGAAT
*
96960811 TTATATATATTTTTATGAAT
1 TTATATATATGTTTATGAAT
96960831 T
1 T
96960832 AAATTTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 7 0.39
20 6 0.33
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.59
Consensus pattern (20 bp):
TTATATATATGTTTATGAAT
Found at i:96961141 original size:21 final size:20
Alignment explanation
Indices: 96961117--96961161 Score: 58
Period size: 19 Copynumber: 2.3 Consensus size: 20
96961107 TCTTGAAAAG
96961117 TCAAAATAGTATATAAAAATA
1 TCAAAATA-TATATAAAAATA
*
96961138 TC-AAATATTTATAAAAATA
1 TCAAAATATATATAAAAATA
96961157 -CAAAA
1 TCAAAA
96961162 AAAGTTAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 1 0.05
19 14 0.64
20 5 0.23
21 2 0.09
ACGTcount: A:0.62, C:0.07, G:0.02, T:0.29
Consensus pattern (20 bp):
TCAAAATATATATAAAAATA
Found at i:96963654 original size:14 final size:14
Alignment explanation
Indices: 96963637--96963663 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
96963627 GGGGGAACTG
96963637 ATTTGGGGAAAATT
1 ATTTGGGGAAAATT
96963651 ATTTGGGGAAAAT
1 ATTTGGGGAAAAT
96963664 GTTAGGGATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.30, T:0.33
Consensus pattern (14 bp):
ATTTGGGGAAAATT
Found at i:96964815 original size:22 final size:22
Alignment explanation
Indices: 96964789--96964866 Score: 93
Period size: 22 Copynumber: 3.3 Consensus size: 22
96964779 CTTCTCCAAT
96964789 CCCTAACCCCTTAAACCCTAAC
1 CCCTAACCCCTTAAACCCTAAC
*
96964811 CCCTAACCCTAACCTTTTAAACCTTAAC
1 CCCTAA-CC---CC--TTAAACCCTAAC
96964839 CCCTAACCCCTTAAACCCTAAC
1 CCCTAACCCCTTAAACCCTAAC
96964861 CCCTAA
1 CCCTAA
96964867 AAACATAAAC
Statistics
Matches: 48, Mismatches: 2, Indels: 12
0.77 0.03 0.19
Matches are distributed among these distances:
22 23 0.48
23 2 0.04
24 2 0.04
26 2 0.04
27 2 0.04
28 17 0.35
ACGTcount: A:0.32, C:0.46, G:0.00, T:0.22
Consensus pattern (22 bp):
CCCTAACCCCTTAAACCCTAAC
Found at i:96964830 original size:28 final size:28
Alignment explanation
Indices: 96964789--96964847 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
96964779 CTTCTCCAAT
96964789 CCCTAACCCCTTAAACCCTAACCCCTAA
1 CCCTAACCCCTTAAACCCTAACCCCTAA
** *
96964817 CCCTAACCTTTTAAACCTTAACCCCTAA
1 CCCTAACCCCTTAAACCCTAACCCCTAA
96964845 CCC
1 CCC
96964848 CTTAAACCCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.31, C:0.47, G:0.00, T:0.22
Consensus pattern (28 bp):
CCCTAACCCCTTAAACCCTAACCCCTAA
Found at i:96964850 original size:15 final size:14
Alignment explanation
Indices: 96964789--96964866 Score: 68
Period size: 15 Copynumber: 5.4 Consensus size: 14
96964779 CTTCTCCAAT
96964789 CCCTAACCCCTTAAA
1 CCCTAACCCC-TAAA
96964804 CCCTAACCCCT-AA
1 CCCTAACCCCTAAA
**
96964817 CCCTAACCTTTTAAA
1 CCCTAACC-CCTAAA
* *
96964832 CCTTAACCCCTAAC
1 CCCTAACCCCTAAA
* *
96964846 CCCTTAAACCCTAAC
1 CCC-TAACCCCTAAA
96964861 CCCTAA
1 CCCTAA
96964867 AAACATAAAC
Statistics
Matches: 52, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 10 0.19
14 10 0.19
15 32 0.62
ACGTcount: A:0.32, C:0.46, G:0.00, T:0.22
Consensus pattern (14 bp):
CCCTAACCCCTAAA
Found at i:96965162 original size:42 final size:42
Alignment explanation
Indices: 96965099--96965225 Score: 168
Period size: 42 Copynumber: 3.1 Consensus size: 42
96965089 ACATGAGGCA
* * *
96965099 TTTTTCAAAAAGCGCAACTAATGCTGGATCTATAGTGGCGTT
1 TTTTTCAAAAAGCGCAGCTAATGCTCGATCTATAGCGGCGTT
* * *
96965141 TTTTTTAAAAAGCGCCGCTAATGCTCGATCTATAGCGGC--A
1 TTTTTCAAAAAGCGCAGCTAATGCTCGATCTATAGCGGCGTT
* *
96965181 TTTTTCAAAAAGCACTGCTAATGCTCGATCTATAGCGGCGTT
1 TTTTTCAAAAAGCGCAGCTAATGCTCGATCTATAGCGGCGTT
96965223 TTT
1 TTT
96965226 AAAAAAGCGC
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
40 36 0.49
42 37 0.51
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.34
Consensus pattern (42 bp):
TTTTTCAAAAAGCGCAGCTAATGCTCGATCTATAGCGGCGTT
Found at i:96965201 original size:40 final size:40
Alignment explanation
Indices: 96965095--96965244 Score: 183
Period size: 40 Copynumber: 3.7 Consensus size: 40
96965085 ATAAACATGA
* * *
96965095 GGCATTTTTCAAAAAGCGCAACTAATGCTGGATCTATAGT
1 GGCATTTTTCAAAAAGCGCTACTAATGCTCGATCTATAGC
* * **
96965135 GGCGTTTTTTTTAAAAAGCGCCGCTAATGCTCGATCTATAGC
1 GGC--ATTTTTCAAAAAGCGCTACTAATGCTCGATCTATAGC
* *
96965177 GGCATTTTTCAAAAAGCACTGCTAATGCTCGATCTATAGC
1 GGCATTTTTCAAAAAGCGCTACTAATGCTCGATCTATAGC
* *
96965217 GGCGTTTTTAAAAAAGCGCTACTAATGC
1 GGCATTTTTCAAAAAGCGCTACTAATGC
96965245 CATTAAAGCT
Statistics
Matches: 94, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
40 60 0.64
42 34 0.36
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (40 bp):
GGCATTTTTCAAAAAGCGCTACTAATGCTCGATCTATAGC
Found at i:96965466 original size:40 final size:40
Alignment explanation
Indices: 96965301--96965450 Score: 144
Period size: 40 Copynumber: 3.8 Consensus size: 40
96965291 GCAAAAATGC
* * * *
96965301 CGCTAATGCTCAACCTATAGCGGCGCTTTT-AAAAA-AAT
1 CGCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGCAT
* * * *
96965339 -GCCATGAATGCTCCATCTATAGCGACATTTTTCATAAAGCAT
1 CG-C-T-AATGCTCGATCTATAGCGGCGTTTTTCAAAAAGCAT
* * *
96965381 CGCTGATGCTCGATCTATAGCGGTGTTTTTCAAAAAGCGT
1 CGCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGCAT
*
96965421 CGCTAATGCTCGATCTATAGTGGCGTTTTT
1 CGCTAATGCTCGATCTATAGCGGCGTTTTT
96965451 ATTTAAGCAC
Statistics
Matches: 89, Mismatches: 17, Indels: 10
0.77 0.15 0.09
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
39 1 0.01
40 77 0.87
41 5 0.06
42 3 0.03
43 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (40 bp):
CGCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGCAT
Found at i:96967703 original size:25 final size:25
Alignment explanation
Indices: 96967643--96967707 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 25
96967633 CTAGATAGAG
* * * *
96967643 ATATGCGACAAAAGCAATATGCAAA
1 ATATGCTACAAAGGCAACATACAAA
*
96967668 ATACG-TCACAAAGGCAACATACAAA
1 ATATGCT-ACAAAGGCAACATACAAA
96967693 ATATGCTACAAAGGC
1 ATATGCTACAAAGGC
96967708 CAAAAAAATG
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
25 31 0.97
26 1 0.03
ACGTcount: A:0.49, C:0.20, G:0.15, T:0.15
Consensus pattern (25 bp):
ATATGCTACAAAGGCAACATACAAA
Found at i:96968873 original size:18 final size:17
Alignment explanation
Indices: 96968850--96968885 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
96968840 ACATATTTTA
*
96968850 TATTAATTCATGTTAATT
1 TATTAATGCATG-TAATT
96968868 TATTAATGCATGTAATT
1 TATTAATGCATGTAATT
96968885 T
1 T
96968886 TCACTGTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.33, C:0.06, G:0.08, T:0.53
Consensus pattern (17 bp):
TATTAATGCATGTAATT
Found at i:96978230 original size:293 final size:293
Alignment explanation
Indices: 96977696--96978258 Score: 815
Period size: 293 Copynumber: 1.9 Consensus size: 293
96977686 CCAAAAATAC
* *
96977696 CATTGTGATTCAAGATGAAGAAGTGAAAGAGAGGTTTGATTCAATCTTCAAGAATCAACCTATGA
1 CATTGTGATTCAAGATGAAGAAGTGAAAGAGAGGTCTGAATCAATCTTCAAGAATCAACCTATGA
*
96977761 TGCCAGAAAAAGATTTCAACTTCGAAAGCACTAATAAATGGTTGTGCCTTTGCCAATTCGAAAGA
66 TGCCAGAAAAAGATTTCAACTTCGAAAGCAATAATAAATGGTTGTGCCTTTGCCAATTCGAAAGA
* * * * * *
96977826 CGATTGATGCCCTTAATTGGAATTATTTTTGCGATACACAATGATTACCTGATAAGGAGTTAGTT
131 CAATTGATGCCCTCAATTGGAATTATTTTTACAATACACAATGATTACCCGATAAGAAGTTAGTT
** * * * *
96977891 TGAGAGTTCTATGCCAATTTTACTAAGCCAGATGCTACTAAAGTTCTTGTTGGCAAGAAGAAAGT
196 CAAGAGTTCTACGCCAATTTGACTAAGCCAGATGCTACTAAAGTTCTTGTTGGCAAAAAGAAAGC
96977956 ACCCCTAACTTCTAAGACCTCTTCCGAAGATAG
261 ACCCCTAACTTCTAAGACCTCTTCCGAAGATAG
*
96977989 CATTGTGATTCAAGATGAAGAAGTGAAAGAGAGGTCTGAATCAATCTTTAAGAATCAACCTATGA
1 CATTGTGATTCAAGATGAAGAAGTGAAAGAGAGGTCTGAATCAATCTTCAAGAATCAACCTATGA
* * * * * *
96978054 TGCC-GAAAAAAGGTTTCAACTTGGAAAGTAATGATAAGATGGTTGTGCC-TTGCCGATTTGAAA
66 TGCCAG-AAAAAGATTTCAACTTCGAAAGCAATAATAA-ATGGTTGTGCCTTTGCCAATTCGAAA
** ** * *
96978117 GACAATTGATGCCCTCAATTGGAATTATTTTTACAATGTAGGATTATTACCCGATGAGAAGTTAG
129 GACAATTGATGCCCTCAATTGGAATTATTTTTACAATACACAATGATTACCCGATAAGAAGTTAG
* * *
96978182 TTCAAGAGTTCTACGCCAATTTGACTAAGCCATATGCTACTGAAGTTCTTGTTGGCAAAAAGAAG
194 TTCAAGAGTTCTACGCCAATTTGACTAAGCCAGATGCTACTAAAGTTCTTGTTGGCAAAAAGAAA
96978247 GCACCCCTAACT
259 GCACCCCTAACT
96978259 AATAAGTCCA
Statistics
Matches: 237, Mismatches: 31, Indels: 4
0.87 0.11 0.01
Matches are distributed among these distances:
292 1 0.00
293 225 0.95
294 11 0.05
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (293 bp):
CATTGTGATTCAAGATGAAGAAGTGAAAGAGAGGTCTGAATCAATCTTCAAGAATCAACCTATGA
TGCCAGAAAAAGATTTCAACTTCGAAAGCAATAATAAATGGTTGTGCCTTTGCCAATTCGAAAGA
CAATTGATGCCCTCAATTGGAATTATTTTTACAATACACAATGATTACCCGATAAGAAGTTAGTT
CAAGAGTTCTACGCCAATTTGACTAAGCCAGATGCTACTAAAGTTCTTGTTGGCAAAAAGAAAGC
ACCCCTAACTTCTAAGACCTCTTCCGAAGATAG
Found at i:96986124 original size:27 final size:26
Alignment explanation
Indices: 96986076--96986135 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
96986066 GCGAGGCTGC
*
96986076 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGACAAAGCCACCAGA-A
* * *
96986103 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACAAAGCCACCAGAA
96986129 CAGATAT
1 CAGATAT
96986136 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACAAAGCCACCAGAA
Found at i:96986241 original size:67 final size:69
Alignment explanation
Indices: 96986103--96986244 Score: 171
Period size: 71 Copynumber: 2.1 Consensus size: 69
96986093 TCACCAGATA
* * * * *
96986103 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACTAGATTGCATCGA
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATATATGT-G-GAAGCCACCAGATTGCAGCGA
96986168 GGCTGC
64 GGCTGC
* * * *
96986174 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTA-GT-GAGGCCACCAGATTTCAGCGAGG
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATATATGTGGAAGCCACCAGATTGCAGCGAGG
96986237 CTGC
66 CTGC
96986241 CAGA
1 CAGA
96986245 ACGCTTCCTC
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
67 27 0.44
70 2 0.03
71 33 0.53
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.21
Consensus pattern (69 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATATATGTGGAAGCCACCAGATTGCAGCGAGG
CTGC
Found at i:96993627 original size:69 final size:67
Alignment explanation
Indices: 96993550--96993689 Score: 190
Period size: 67 Copynumber: 2.1 Consensus size: 67
96993540 TCACTAGATA
* * *
96993550 CAGATATTGTGGCTAGGCCACCAAAACAGATATATATGTGGCGAAGCCACCAGATTACAGCGAGG
1 CAGATATTGTGACGAAGCCACCAAAACAG--ATATATGTGGCGAAGCCACCAGATTACAGCGAGG
96993615 CTGC
64 CTGC
* * * * *
96993619 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACTAGATTGCAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAAAACAGATATATGTGGCGAAGCCACCAGATTACAGCGAGGCT
96993684 GC
66 GC
96993686 CAGA
1 CAGA
96993690 ACACTTCCTC
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
67 39 0.62
69 24 0.38
ACGTcount: A:0.31, C:0.22, G:0.28, T:0.19
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAAAACAGATATATGTGGCGAAGCCACCAGATTACAGCGAGGCT
GC
Found at i:96996091 original size:43 final size:43
Alignment explanation
Indices: 96996043--96996192 Score: 151
Period size: 43 Copynumber: 3.5 Consensus size: 43
96996033 GTTACCGAGA
*
96996043 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGACATTGTAT
* * * *
96996086 TGTGATTACGTGTAAGACCATGTCTGGGAAATTGACATCGTTAA
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGACATTG-TAT
** * * * **
96996130 T-CAATTTCATGTAAGACCCTGTCTGGGACAGTGACA-TCAAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGACATTGTAT
*
96996171 ATGTGATAACATGTAAGACCAT
1 -TGTGATTACATGTAAGACCAT
96996193 ATTTGGTATA
Statistics
Matches: 83, Mismatches: 21, Indels: 6
0.75 0.19 0.05
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 78 0.94
44 3 0.04
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGACATTGTAT
Found at i:96998375 original size:56 final size:56
Alignment explanation
Indices: 96998315--96998600 Score: 387
Period size: 56 Copynumber: 5.1 Consensus size: 56
96998305 TTGTAAACAT
* * * *
96998315 ATATCGGAATCACCTATCGATACCAACGTATTAAATGTGGCCTTACTCGCACATAC
1 ATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACATAC
* *
96998371 ATATCGGAATCTCATATCGATGCCAACGTATTAAACGTGGTCTTACTCGTACATAC
1 ATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACATAC
* * * *
96998427 ATATCGAAATCGCATATCGATGCCAACGTATTAAACGTGGTCTTACTCACACACAC
1 ATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACATAC
* * *
96998483 ATATCGGAATCACATATCGATGCCAATGCATTAAACGTGGTCTTGA-TCGCACACAC
1 ATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTT-ACTCGCACATAC
* * * *
96998539 ATATCGGAATCACATATCGATGCCAACATATTAAATGTGGTCTTAGTCGTA-ATCAC
1 ATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACAT-AC
96998595 ATATCG
1 ATATCG
96998601 ATGCCAACGT
Statistics
Matches: 205, Mismatches: 22, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
55 2 0.01
56 202 0.99
57 1 0.00
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.28
Consensus pattern (56 bp):
ATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACATAC
Found at i:96998622 original size:43 final size:43
Alignment explanation
Indices: 96998546--96998641 Score: 113
Period size: 43 Copynumber: 2.2 Consensus size: 43
96998536 CACATATCGG
** * *
96998546 AATCACATATCGATGCCAACATATTAAATGTGGTCTTA-GTCGT
1 AATCACATATCGATGCCAACATACCAAACGTGGTCTTACAT-GT
* * *
96998589 AATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACATGT
1 AATCACATATCGATGCCAACATACCAAACGTGGTCTTACATGT
96998632 AATCACATAT
1 AATCACATAT
96998642 AAGAAATCCT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
43 44 0.98
44 1 0.02
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (43 bp):
AATCACATATCGATGCCAACATACCAAACGTGGTCTTACATGT
Found at i:97002366 original size:43 final size:43
Alignment explanation
Indices: 97002306--97002388 Score: 139
Period size: 43 Copynumber: 1.9 Consensus size: 43
97002296 GAGATATGTG
* *
97002306 GCATCCGGGCTCGTTGAGTGGTCCGAGTTCATTATGGATGCGA
1 GCATCCGAGCTCATTGAGTGGTCCGAGTTCATTATGGATGCGA
*
97002349 GCATCCGAGCTCATTGAGTGGTCCGAGTTCATTGTGGATG
1 GCATCCGAGCTCATTGAGTGGTCCGAGTTCATTATGGATG
97002389 TGATGCCTGT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.17, C:0.20, G:0.34, T:0.29
Consensus pattern (43 bp):
GCATCCGAGCTCATTGAGTGGTCCGAGTTCATTATGGATGCGA
Found at i:97006908 original size:43 final size:43
Alignment explanation
Indices: 97006860--97007009 Score: 144
Period size: 43 Copynumber: 3.5 Consensus size: 43
97006850 GTTACCGAGA
97006860 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
* * * *
97006903 TGTGATTACGTGTAAGACCATGTCTGGGAAATTGGCATCGTTAA
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTG-TAT
** * * * **
97006947 T-CAATTTCATGTAAGAGCC-TGTCTGGGACAGTGACA-TCAAT
1 TGTGATTACATGTAAGA-CCATGTCTGGGACATTGGCATTGTAT
*
97006988 ATGTGATAACATGTAAGACCAT
1 -TGTGATTACATGTAAGACCAT
97007010 ATTTGGTATA
Statistics
Matches: 83, Mismatches: 19, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
41 1 0.01
42 3 0.04
43 74 0.89
44 5 0.06
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.31
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
Found at i:97009129 original size:56 final size:56
Alignment explanation
Indices: 97009063--97009309 Score: 329
Period size: 56 Copynumber: 4.4 Consensus size: 56
97009053 TCCCAGACAG
* * * * *
97009063 GGTCTTACTCGTAAACACATATCAAAATCACCTATTGATGCCAACGTATTAAACAT
1 GGTCTTACTCGTACACACATATCGAAATCACATATCGATGCCAACGTATTAAACGT
* * * *
97009119 GGTCTTACTCGCACACACATATCGGAATCACATATCGATGCCAATGTATTAAATGT
1 GGTCTTACTCGTACACACATATCGAAATCACATATCGATGCCAACGTATTAAACGT
* *
97009175 GGTCTTACTCGTACACACATATCGAAATCAGATATCGATGCCAATGTATTAAACGT
1 GGTCTTACTCGTACACACATATCGAAATCACATATCGATGCCAACGTATTAAACGT
* ** *
97009231 GGTTTTACTCG--CACACACGTCGAAATCACATATCGATGCCAACGTATTAAATGT
1 GGTCTTACTCGTACACACATATCGAAATCACATATCGATGCCAACGTATTAAACGT
97009285 GGTCTTACTCGTA-ATCACATATCGA
1 GGTCTTACTCGTACA-CACATATCGA
97009310 TGCCAACGTC
Statistics
Matches: 166, Mismatches: 22, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
54 48 0.29
55 1 0.01
56 117 0.70
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (56 bp):
GGTCTTACTCGTACACACATATCGAAATCACATATCGATGCCAACGTATTAAACGT
Found at i:97009331 original size:43 final size:43
Alignment explanation
Indices: 97009254--97009351 Score: 117
Period size: 43 Copynumber: 2.3 Consensus size: 43
97009244 CACACGTCGA
** ** *
97009254 AATCACATATCGATGCCAACGTATTAAATGTGGTCTTACT-CGT
1 AATCACATATCGATGCCAACGTAGCAAACATGGTCTTA-TACAT
* *
97009297 AATCACATATCGATGCCAACGTCGCAGACATGGTCTTATACAT
1 AATCACATATCGATGCCAACGTAGCAAACATGGTCTTATACAT
97009340 AATCACATATCG
1 AATCACATATCG
97009352 GAAATCCTAT
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 1 0.02
43 46 0.98
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (43 bp):
AATCACATATCGATGCCAACGTAGCAAACATGGTCTTATACAT
Found at i:97011072 original size:85 final size:85
Alignment explanation
Indices: 97010929--97011099 Score: 333
Period size: 85 Copynumber: 2.0 Consensus size: 85
97010919 GGCCGGCCAT
*
97010929 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCACGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
97010994 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
97011014 GAGCACGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCACGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
97011079 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
97011099 G
1 G
97011100 GGCATGGGCA
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 85 1.00
ACGTcount: A:0.39, C:0.09, G:0.26, T:0.26
Consensus pattern (85 bp):
GAGCACGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:97012428 original size:47 final size:47
Alignment explanation
Indices: 97012374--97012921 Score: 755
Period size: 47 Copynumber: 11.6 Consensus size: 47
97012364 TATTTGAATA
* * *
97012374 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
97012421 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
97012468 AATGTGAAAGTGTATATATGTGATACGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
97012515 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
97012564 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
97012611 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
97012660 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
97012707 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
97012754 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
97012801 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGACCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
97012848 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
97012895 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
97012922 TCCCGAAGGG
Statistics
Matches: 469, Mismatches: 26, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
46 1 0.00
47 376 0.80
49 91 0.19
50 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:97015408 original size:38 final size:38
Alignment explanation
Indices: 97015344--97015418 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
97015334 AATCCGAGTT
*
97015344 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
97015382 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
97015419 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:97015586 original size:40 final size:40
Alignment explanation
Indices: 97015476--97015828 Score: 534
Period size: 40 Copynumber: 8.9 Consensus size: 40
97015466 CTCGACAATG
97015476 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
97015516 ATCTGGGCTAAGT-CTGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
97015555 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
97015595 ATCCGGG-TAAGTTCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
97015634 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
97015674 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
97015714 ATCCGGGCTAAGT-TCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * * * *
97015753 ATCCGTGCTAA-ACCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
97015792 ATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
97015829 CGTGTATTCG
Statistics
Matches: 287, Mismatches: 22, Indels: 8
0.91 0.07 0.03
Matches are distributed among these distances:
39 139 0.48
40 148 0.52
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:97015614 original size:79 final size:80
Alignment explanation
Indices: 97015476--97015828 Score: 534
Period size: 79 Copynumber: 4.5 Consensus size: 80
97015466 CTCGACAATG
* *
97015476 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCTGGGCTAAGT-CTGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
97015540 TCATGCTAGTGATGT
66 TCATGCTAGTGATGT
*
97015555 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGG-TAAGTTCCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
*
97015619 TCGTGCTAGTGATGT
66 TCATGCTAGTGATGT
97015634 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
97015699 TCATGCTAGTGATGT
66 TCATGCTAGTGATGT
* * * * *
97015714 ATCCGGGCTAAGT-TCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAA-ACCCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
* * * *
97015777 TCGTGCTGGTGTTAT
66 TCATGCTAGTGATGT
* * *
97015792 ATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
97015829 CGTGTATTCG
Statistics
Matches: 252, Mismatches: 19, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
78 40 0.16
79 169 0.67
80 43 0.17
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
TCATGCTAGTGATGT
Found at i:97018029 original size:49 final size:47
Alignment explanation
Indices: 97017744--97019081 Score: 2237
Period size: 47 Copynumber: 28.3 Consensus size: 47
97017734 CCCTTCGGGA
* * * * * *
97017744 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97017791 C-TATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97017836 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97017883 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97017930 CTTATCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
97017976 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97018025 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97018072 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
97018119 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
97018166 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCACTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97018215 CTTATCACATAT-TACACTTTCACATTCAT--CATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
97018259 CTTATCACATATATTACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCACATATA-TACACTTTCACATTCATCACATCGGCCATTAGGC
*
97018307 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTA-GC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
97018355 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97018402 CTTATCACATATATACA-TTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97018448 CTTATCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97018494 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
97018541 CTTATCACATATATATACACTTTCACGTTCACCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97018590 CTTATCACATA-ATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
97018636 CTTATCACTATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97018684 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
97018731 CTTATCACATATATATACACTTTCACGTTCACCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97018780 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97018827 CTTATCACAAATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97018876 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
*
97018925 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
97018972 CTTATCACATATATCCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
97019019 CTTATCAATATATATATACACTTTCACATTCGTCACATCGGCCATTAGGC
1 CTTATC---ACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97019069 CTTATCACATATA
1 CTTATCACATATA
97019082 CTATCATGTA
Statistics
Matches: 1230, Mismatches: 32, Indels: 58
0.93 0.02 0.04
Matches are distributed among these distances:
44 26 0.02
45 32 0.03
46 237 0.19
47 504 0.41
48 96 0.08
49 286 0.23
50 49 0.04
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:97018133 original size:96 final size:94
Alignment explanation
Indices: 97017744--97019081 Score: 2237
Period size: 96 Copynumber: 14.1 Consensus size: 94
97017734 CCCTTCGGGA
* * * * * *
97017744 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCC-TATCACA-ATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
97017807 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
97017836 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
97017901 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
97017930 CTTATCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
97017994 ACTTTCACATTCACCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
97018025 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
97018090 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
97018119 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
97018184 ACTTTCACATTCACCACATCGGCCACTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
97018215 CTTATCACATAT-TACACTTTCACATTCAT--CATCGGCCATTAGGCCTTATCACATATATTACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA-TACA
*
97018277 CTTTCACATTCACCACATCGGCCATTAGGC
65 CTTTCACATTCATCACATCGGCCATTAGGC
*
97018307 CTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTA-GCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
97018371 ACTTTCACATTCATCACATCGGCTATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
97018402 CTTATCACATATATACA-TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
97018466 TTTCACATTCA-CACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
97018494 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
97018559 ACTTTCACGTTCACCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
97018590 CTTATCACATA-ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACTATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACA
*
97018654 CTTTCACATTCACCACATCGGCCATTAGGC
65 CTTTCACATTCATCACATCGGCCATTAGGC
97018684 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
97018749 ACTTTCACGTTCACCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
97018780 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAAATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
97018845 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
97018876 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
97018941 ACTTTCACATTCATCACATCGGCTATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
97018972 CTTATCACATATATCCACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAATATATATATA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC---ACATATATA
*
97019037 CACTTTCACATTCGTCACATCGGCCATTAGGC
63 CACTTTCACATTCATCACATCGGCCATTAGGC
97019069 CTTATCACATATA
1 CTTATCACATATA
97019082 CTATCATGTA
Statistics
Matches: 1192, Mismatches: 29, Indels: 45
0.94 0.02 0.04
Matches are distributed among these distances:
91 5 0.00
92 141 0.12
93 132 0.11
94 250 0.21
95 245 0.21
96 315 0.26
97 63 0.05
98 41 0.03
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:97023512 original size:40 final size:40
Alignment explanation
Indices: 97023427--97023776 Score: 560
Period size: 40 Copynumber: 8.8 Consensus size: 40
97023417 CCAGCATGAT
* *
97023427 TGCTCTTCGGGACCTAGCCCGGATA-A-CACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
97023465 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
97023505 TGCTCTTCGGGACTTTGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
97023545 TGCTATTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
97023585 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
97023625 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
97023665 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
97023705 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
97023745 TGCTCTTCGGGACTTAGCCCGGATACATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
97023777 CTCAATTCTC
Statistics
Matches: 289, Mismatches: 21, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
38 21 0.07
39 1 0.00
40 267 0.92
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:97025305 original size:49 final size:47
Alignment explanation
Indices: 97025193--97026098 Score: 561
Period size: 49 Copynumber: 18.1 Consensus size: 47
97025183 TTATCAATAT
* * * * *
97025193 TATATACACTTTCACATCCATCACGTTGGCCACTCGGCC-TATCACA
1 TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
*
97025239 TATATACACTTTCACATTCATCACAT-GGCCATTCGGCCTTATCACA
1 TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
*
97025285 TCATATTACAACTTTAACATTCATCCACATCGGCCATTAGGCCTTATCACA
1 T-ATA-TAC-ACTTTCACATTCAT-CACATCGGCCATTAGGCCTTATCACA
97025336 TAATATACACTTTCACAATTCATCACATCGGCCATTAGGCCTTATCACA
1 T-ATATACACTTTCAC-ATTCATCACATCGGCCATTAGGCCTTATCACA
*
97025385 TATATACACTTTTCACATTCCACGCACATCGGCCA-TAGGCCTTATCACATA
1 TATATACAC-TTTCACATT-CA-TCACATCGGCCATTAGGCCTTATCAC--A
* * * *
97025436 TATATACACTTTCACATAACAGCACATCGTCGCTTATAGGCCTTATCACATA
1 TATATACACTTTCACAT-TCATCACATCGGC-CAT-TAGGCCTTATCAC--A
97025488 TATATACACTTTCACATTCATCACACATCCGG-CATTAGGCCTATATCACACA
1 TATATACACTTTCACATTCAT--CACAT-CGGCCATTAGGCCT-TAT--CACA
*
97025540 TATTATACACTTTCCACACTTCATCAGCATTCGGCAATTAGCGCCCCTCCTATCACA
1 TA-TATACACTTT-CACA-TTCATCA-CA-TCGGCCATTAG-G--CCT--TATCACA
* * * *
97025597 TATATACACCTCCTACCTTC-CCACATCGG-CATTAGGCCTTATCACAA
1 TATATACACTTTC-ACATTCATCACATCGGCCATTAGGCCTTATCAC-A
97025644 TATATACACTTTCACATTCA-CACATCGGCCATTA-GCCTTATTCATCA
1 TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA-TCA-CA
* *** * * ** **
97025691 CATCGGC-CATT-AGGCCTT-ATCACAT---ATATATACACC-T-TCACA
1 TATATACACTTTCA--CATTCATCACATCGGCCAT-TAGGCCTTATCACA
* * ** *
97025733 TGTCA-CCACATCGGCCCATTCATCACATC--CCATTCACATCGGCCATTAGCTCA-A
1 TAT-ATACAC-T-TTCACATTCATCACATCGGCCATT---A--GGCC-TTA--TCACA
*
97025787 TTATATACCACTTTCACATTACCATGCAGTC-TCCCTGCGGCATTAGGCCTTATCACA
1 -TATATA-CACTTTCACATT--CAT-CA--CAT--C-G-GCCATTAGGCCTTATCACA
97025844 CTATACCTACACTTTCAC-TTCATCACACATCTCGGCCATTAGGCCTTATCACAA
1 -TATA--TACACTTTCACATTCAT--CACA--TCGGCCATTAGGCCTTATCAC-A
*
97025898 TATATACACTTTCACCA-TCACCACATCCGGCCATTTAGGCCTTGATCACA
1 TATATACACTTTCA-CATTCATCACAT-CGGCCA-TTAGGCCTT-ATCACA
97025948 TAT-TACACCTTTCACATTCATCCACATCGG-CATTAGGCCTTATCACA
1 TATATACA-CTTTCACATTCAT-CACATCGGCCATTAGGCCTTATCACA
97025995 TATAT-CACCTTTCACATTCATCACATCGGCCATTAGGCCATATATCACACTA
1 TATATACA-CTTTCACATTCATCACATCGGCCATTAGGCC-T-TAT--CAC-A
97026047 TTCATATACACTTTCACATTCATCACATCGGCCATTTAGG-CTTATCACA
1 -T-ATATACACTTTCACATTCATCACATCGGCCA-TTAGGCCTTATCACA
97026096 TAT
1 TAT
97026099 TACTCATCAT
Statistics
Matches: 701, Mismatches: 58, Indels: 201
0.73 0.06 0.21
Matches are distributed among these distances:
42 4 0.01
43 4 0.01
44 5 0.01
45 23 0.03
46 73 0.10
47 71 0.10
48 32 0.05
49 95 0.14
50 71 0.10
51 70 0.10
52 54 0.08
53 42 0.06
54 55 0.08
55 32 0.05
56 22 0.03
57 16 0.02
58 16 0.02
59 10 0.01
60 1 0.00
61 1 0.00
64 4 0.01
ACGTcount: A:0.29, C:0.32, G:0.09, T:0.30
Consensus pattern (47 bp):
TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
Found at i:97025450 original size:99 final size:95
Alignment explanation
Indices: 97025193--97025684 Score: 491
Period size: 99 Copynumber: 5.0 Consensus size: 95
97025183 TTATCAATAT
* * * * * *
97025193 TATATACACTTTCACATCCATCACGTTGGCCACTCGGCC-TATCAC-ATATATACACTTTCACAT
1 TATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACAT
*
97025256 TCATCACAT-GGCCATTCGGCCTTATCACA
66 TCATCACATCGGCCATTAGGCCTTATCACA
*
97025285 TCATATTACAACTTTAACATTCATCCACATCGGCCATTAGGCCTTATCAC-ATAATATACACTTT
1 T-ATA-TAC-ACTTTCACATTCA-CCACATCGGCCATTAGGCCTTATCACAAT-ATATACACTTT
97025349 CACAATTCATCACATCGGCCATTAGGCCTTATCACA
61 CAC-ATTCATCACATCGGCCATTAGGCCTTATCACA
97025385 TATATACACTTTTCACATTCCACGCACATCGGCCA-TAGGCCTTATCACATATATATACACTTTC
1 TATATACAC-TTTCACATT-CAC-CACATCGGCCATTAGGCCTTATCACA-ATATATACACTTTC
* * * *
97025449 ACATAACAGCACATCGTCGCTTATAGGCCTTATCACATA
62 ACAT-TCATCACATCGGC-CAT-TAGGCCTTATCAC--A
97025488 TATATACACTTTCACATTCATCACACATCCGG-CATTAGGCCTATATCACACATATTATACACTT
1 TATATACACTTTCACATTCA-C-CACAT-CGGCCATTAGGCCT-TATCACA-ATA-TATACACTT
*
97025552 TCCACACTTCATCAGCATTCGGCAATTAGCGCCCCTCCTATCACA
60 T-CACA-TTCATCA-CA-TCGGCCATTAG-G--CCT--TATCACA
* * *
97025597 TATATACACCTCCTACCTTC-CCACATCGG-CATTAGGCCTTATCACAATATATACACTTTCACA
1 TATATACACTTTC-ACATTCACCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACA
97025660 TTCA-CACATCGGCCATTA-GCCTTAT
65 TTCATCACATCGGCCATTAGGCCTTAT
97025685 TCATCACATC
Statistics
Matches: 343, Mismatches: 24, Indels: 66
0.79 0.06 0.15
Matches are distributed among these distances:
92 4 0.01
93 3 0.01
94 6 0.02
95 11 0.03
96 15 0.04
97 10 0.03
98 50 0.15
99 53 0.15
100 26 0.08
101 19 0.06
102 21 0.06
103 30 0.09
104 13 0.04
105 17 0.05
106 24 0.07
107 10 0.03
108 5 0.01
109 15 0.04
110 5 0.01
111 6 0.02
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.30
Consensus pattern (95 bp):
TATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACAATATATACACTTTCACAT
TCATCACATCGGCCATTAGGCCTTATCACA
Found at i:97025693 original size:25 final size:25
Alignment explanation
Indices: 97025659--97025714 Score: 89
Period size: 25 Copynumber: 2.3 Consensus size: 25
97025649 ACACTTTCAC
97025659 ATTCACACATCGGCCATTA-GCCTT
1 ATTCACACATCGGCCATTAGGCCTT
97025683 ATTCATCACATCGGCCATTAGGCCTT
1 ATTCA-CACATCGGCCATTAGGCCTT
97025709 A-TCACA
1 ATTCACA
97025715 TATATATACA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
24 7 0.23
25 17 0.57
26 6 0.20
ACGTcount: A:0.27, C:0.32, G:0.12, T:0.29
Consensus pattern (25 bp):
ATTCACACATCGGCCATTAGGCCTT
Found at i:97025985 original size:151 final size:147
Alignment explanation
Indices: 97025824--97026101 Score: 381
Period size: 151 Copynumber: 1.9 Consensus size: 147
97025814 AGTCTCCCTG
97025824 CGGCATTAGGCCTTATCACACTATACCTACACTTTCAC-TTCATCACACATCTCGGCCATTAGGC
1 CGGCATTAGGCCTTATCACA-TATACC-AC-CTTTCACATTCAT--CACA--TCGGCCATTAGGC
97025888 C-T-TATCACA-A-T-ATATACACTTTCACCA-TCACCACATCCGGCCATTTAGGCCTTGATCAC
59 CATATATCACACATTCATATACACTTTCA-CATTCACCACAT-CGGCCATTTAGG-CTT-ATCAC
97025947 ATATTACACCTTTCACATTCATCCACAT
120 ATATTACACCTTTCACATTCATCCACAT
*
97025975 CGGCATTAGGCCTTATCACATATATCACCTTTCACATTCATCACATCGGCCATTAGGCCATATAT
1 CGGCATTAGGCCTTATCACATATACCACCTTTCACATTCATCACATCGGCCATTAGGCCATATAT
*
97026040 CACACTATTCATATACACTTTCACATTCATCACATCGGCCATTTAGGCTTATCACATATTAC
66 CACAC-ATTCATATACACTTTCACATTCACCACATCGGCCATTTAGGCTTATCACATATTAC
97026102 TCATCATGTA
Statistics
Matches: 117, Mismatches: 2, Indels: 19
0.85 0.01 0.14
Matches are distributed among these distances:
145 14 0.12
146 1 0.01
147 11 0.09
148 19 0.16
149 11 0.09
150 20 0.17
151 41 0.35
ACGTcount: A:0.28, C:0.32, G:0.09, T:0.31
Consensus pattern (147 bp):
CGGCATTAGGCCTTATCACATATACCACCTTTCACATTCATCACATCGGCCATTAGGCCATATAT
CACACATTCATATACACTTTCACATTCACCACATCGGCCATTTAGGCTTATCACATATTACACCT
TTCACATTCATCCACAT
Found at i:97031328 original size:47 final size:47
Alignment explanation
Indices: 97031260--97032598 Score: 2087
Period size: 47 Copynumber: 28.3 Consensus size: 47
97031250 TACATGATAG
* ** *
97031260 TATATGTGATAAGGCCTAATGGCCGATGTGACGAATGTGAGTGTATAA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT-A
*
97031308 TATATGTGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
97031354 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
97031401 TATATGTG-TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTTGGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-T-GTA
97031448 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
97031497 TATTTATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TA--TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* *
97031546 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAACGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
97031595 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT-A
*
97031643 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
97031690 TAT-TATGATAAGGCCT-ATAGG-CGATGTTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAAT-GGCCGATG-TGATGAATGTGAAAGTGTA
* *
97031736 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAACGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
97031785 TATATGTGATAGAGG-CTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATA-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
97031832 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
97031879 TTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AAGTGTA
1 -TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
97031926 TATATGTGATAGAGGCCTAGATAGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATA-AGGCCTA-ATGGCCGATGTGATGAATGTGAAAGTGTA
*
97031975 TATATGTGATAAGGCCTAATGGCCGATGTG--GGATGGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAAT-GTGAAAGTG--TA
97032023 TATATGTGATAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTAAA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT--A
97032071 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* * *
97032118 -ATATAGTG-TAAGGCCTAGTGGCCGATGTGGTGAATGTGAAAGTATTA
1 TATAT-GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT-GTA
*
97032165 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
97032212 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
97032259 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
97032306 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
97032353 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
97032400 TATATGTGATAAGGCCTAATGGCCGATGTGATG-ATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
97032446 TATATGTGATAAGGCCTAATGGCCGATGTGATG-ATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
97032492 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* * * * * *
97032539 TATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
97032586 TAAATGTGATAAG
1 TATATGTGATAAG
97032599 TCCCGAAGGG
Statistics
Matches: 1210, Mismatches: 44, Indels: 75
0.91 0.03 0.06
Matches are distributed among these distances:
45 22 0.02
46 220 0.18
47 520 0.43
48 260 0.21
49 142 0.12
50 3 0.00
51 43 0.04
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.30
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:97034561 original size:40 final size:40
Alignment explanation
Indices: 97034500--97034856 Score: 536
Period size: 40 Copynumber: 8.9 Consensus size: 40
97034490 CGAATACACG
* * * *
97034500 TCACCAGCATG-ATTCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * ** * *
97034539 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
97034579 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
97034619 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
97034659 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
97034699 TCACTAGCACGAATGCTCTTCGGAACTTAACCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
97034739 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
97034779 TCACTAGCATGAATGCTCTTCAGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
97034819 TCACTAGCATGAATGCTCTTCGGGACTTAGCCGCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCC-CGGAT
97034857 CATTGTCGAG
Statistics
Matches: 290, Mismatches: 26, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 9 0.03
40 276 0.95
41 5 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:97034957 original size:38 final size:38
Alignment explanation
Indices: 97034915--97034989 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
97034905 GAATTTTAAT
*
97034915 CCGGACATAATCTCTGT-ACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCT-TCACATAGCCAGCGGGTCTTTAC
* *
97034953 CCGGACATAATCTCTTCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTA
97034990 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTAC
Found at i:97037565 original size:47 final size:47
Alignment explanation
Indices: 97037383--97037923 Score: 672
Period size: 47 Copynumber: 11.5 Consensus size: 47
97037373 CCCTTCGGGA
* * *
97037383 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
97037430 CTTA-CTCATAAATGCA-TGTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
97037476 CTTCATCAC--ATACACA-TGTTCACA-TCATCACATTGGCCATTCGGC
1 CTT-ATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
97037521 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
97037568 CTTATCTCATATAT--GCTGTTCACATTCATCACCATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCA-CATTGGCCATTCGGC
* *
97037615 CTTATCA-ACACATACACATTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACAC-TTTCACATTCATCACATTGGCCATTCGGC
97037662 CTTATCCACATTATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTAT-CACA-TATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
97037711 CTTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
97037759 CTTATCACATATATATACACTTTCAC-TTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
97037807 CGTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
97037854 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
97037901 CTTATCACATATATACACTTTCA
1 CTTATCACATATATACACTTTCA
97037924 TTATTCAATA
Statistics
Matches: 449, Mismatches: 27, Indels: 36
0.88 0.05 0.07
Matches are distributed among these distances:
44 5 0.01
45 24 0.05
46 98 0.22
47 172 0.38
48 87 0.19
49 55 0.12
50 8 0.02
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:97037904 original size:286 final size:279
Alignment explanation
Indices: 97037383--97037907 Score: 684
Period size: 286 Copynumber: 1.9 Consensus size: 279
97037373 CCCTTCGGGA
* *
97037383 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGCCTTACTCATAAATGCATG
1 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGCCTTACACATAAATACATG
* * * *
97037448 TTCACATTCATCACATTGGTCATTCGGCCTTCATCACATACACATGTTCACATCATCACATTGGC
66 TTCACATTCATCACATCGGCCATTAGGCCTTCATCACATACACATGTTCACATCATCACATCGGC
* * * * *
97037513 CATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCAT
131 CATTAGGCCGTATCACACATACACATGTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
* * *
97037578 ATATGCTGTTCACATTCATCACCATTGGCCATTCGGCCTTATCAACACATACACATTTCACATTC
196 ATATACTGTTCACATTCATCACCATCGGCCATTAGGCCTTATCAACACATACACATTTCACATTC
97037643 ATCACATTGGCCATTCGGC
261 ATCACATTGGCCATTCGGC
* * *
97037662 CTTATCCACATTATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATTCACATATATA
1 CTTAT-CACATT-TATACACTTCCACATCCATCACATTGGCCATTCGGCCTTA--CACATAAATA
* *
97037727 CACT-TTCACATTCATCACATCGGCCATTAGGCCTT-ATCACATATATATACACT-TTCACTTCA
62 CA-TGTTCACATTCATCACATCGGCCATTAGGCCTTCATCAC----ATACACA-TGTTCACATCA
* * *
97037789 TCACATCGGCCATTAGGCCGTATCACATATATACACT-TTCACATTCATCACATCGGCTATTAGG
121 TCACATCGGCCATTAGGCCGTATCACACATACACA-TGTTCACATTCATCACATCGGCCATTAGG
*
97037853 CCTTATCACATATATACACT-TTCACATTCATCA-CATCGGCTATTAGGCCTTATCA
185 CCTTATCACATATAT--ACTGTTCACATTCATCACCATCGGCCATTAGGCCTTATCA
97037908 CATATATACA
Statistics
Matches: 210, Mismatches: 23, Indels: 19
0.83 0.09 0.08
Matches are distributed among these distances:
279 5 0.02
280 6 0.03
281 38 0.18
282 5 0.02
283 37 0.18
284 1 0.00
286 101 0.48
287 15 0.07
288 2 0.01
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (279 bp):
CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGCCTTACACATAAATACATG
TTCACATTCATCACATCGGCCATTAGGCCTTCATCACATACACATGTTCACATCATCACATCGGC
CATTAGGCCGTATCACACATACACATGTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
ATATACTGTTCACATTCATCACCATCGGCCATTAGGCCTTATCAACACATACACATTTCACATTC
ATCACATTGGCCATTCGGC
Found at i:97042884 original size:39 final size:40
Alignment explanation
Indices: 97042826--97043005 Score: 105
Period size: 40 Copynumber: 4.5 Consensus size: 40
97042816 AATCAAGCAT
* * *
97042826 CTTCGGGT-TT-AGCCGGATATAACCACTCGCA-CAAGGC
1 CTTCGGGTCTTAACCCGGATATAACCACTAGCATAAAGGC
*** *
97042863 CTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAACCCGGATATAACCACTAGCATAAAGGC
* * ** * * *
97042903 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAACCCGGATATAACCACTAGCATAAAGGC
* ** * ** * * *
97042943 CTTCGGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAAGC
1 CTTCGGGTCTTAACCCGGATATAACCAC-TAGCATAAAGGC
* *
97042984 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAACCCGGATAT
97043006 CATTCGAGTA
Statistics
Matches: 118, Mismatches: 21, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
37 8 0.07
38 2 0.02
39 16 0.14
40 63 0.53
41 29 0.25
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAACCCGGATATAACCACTAGCATAAAGGC
Found at i:97042988 original size:41 final size:40
Alignment explanation
Indices: 97042861--97043005 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
97042851 CTCGCACAAG
* * * * *
97042861 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
97042901 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
97042941 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
97042982 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
97043006 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:97052381 original size:40 final size:40
Alignment explanation
Indices: 97052337--97052525 Score: 308
Period size: 40 Copynumber: 4.7 Consensus size: 40
97052327 GCTACTTGCT
*
97052337 CAAATGCCTTCGGGACTTAGCCTGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
97052377 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
97052417 CAAATGCCTTTGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
97052457 CAAATGCCTTCGGGACTTAGCCCGGATT-TATTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
97052497 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
97052526 CATCCGAATA
Statistics
Matches: 139, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
39 2 0.01
40 136 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:97066215 original size:96 final size:96
Alignment explanation
Indices: 97066049--97066235 Score: 302
Period size: 96 Copynumber: 1.9 Consensus size: 96
97066039 TTCTTTTTAC
* *
97066049 TCCTCTTTGCCCACTTGGCTTCGGCTTTTCCCTTGCTCAAGCCAAGCTTCTTGGGCTCCTTGTTT
1 TCCTCTTTGCCCACTTGGCTTCGGCTCTTCCCTTGCTCAAACCAAGCTTCTTGGGCTCCTTGTTT
* *
97066114 CCTCTATCATTCCCTTTGATGACAGATGTGT
66 ACTCTATCATTCCCTTCGATGACAGATGTGT
* * *
97066145 TCCTCTTTTCCCTCTTGGCTTTGGCTCTTCCCTTGCTCAAACCAAGCTTCTTGGGCTCCTTGTTT
1 TCCTCTTTGCCCACTTGGCTTCGGCTCTTCCCTTGCTCAAACCAAGCTTCTTGGGCTCCTTGTTT
*
97066210 ACTCTATCATTCCCTTCGATTACAGA
66 ACTCTATCATTCCCTTCGATGACAGA
97066236 CTTCCTCGGA
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
96 83 1.00
ACGTcount: A:0.12, C:0.32, G:0.16, T:0.40
Consensus pattern (96 bp):
TCCTCTTTGCCCACTTGGCTTCGGCTCTTCCCTTGCTCAAACCAAGCTTCTTGGGCTCCTTGTTT
ACTCTATCATTCCCTTCGATGACAGATGTGT
Found at i:97067032 original size:16 final size:17
Alignment explanation
Indices: 97067001--97067039 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
97066991 TGTGTAATGC
97067001 CCCAAAAATCCCGAAA-
1 CCCAAAAATCCCGAAAT
**
97067017 CCCAAAAATCTTGAAAT
1 CCCAAAAATCCCGAAAT
97067034 CCCAAA
1 CCCAAA
97067040 CTTTCTTTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.49, C:0.33, G:0.05, T:0.13
Consensus pattern (17 bp):
CCCAAAAATCCCGAAAT
Found at i:97068430 original size:29 final size:29
Alignment explanation
Indices: 97068398--97068460 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 29
97068388 CCTAATGGGA
*
97068398 CATATAAATGTGATTTGGGAATAATAGGC
1 CATATAAAGGTGATTTGGGAATAATAGGC
* ** *
97068427 CATATACAGGTGATTTGGGCCTAATGGGC
1 CATATAAAGGTGATTTGGGAATAATAGGC
97068456 CATAT
1 CATAT
97068461 GAATATTATT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (29 bp):
CATATAAAGGTGATTTGGGAATAATAGGC
Found at i:97072200 original size:20 final size:20
Alignment explanation
Indices: 97072172--97072215 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
97072162 TACCAACTTG
* *
97072172 CAACTTACTATAATCTTTGA
1 CAACATACTATAATCTTTCA
*
97072192 CAACATACTATAGTCTTTCA
1 CAACATACTATAATCTTTCA
97072212 CAAC
1 CAAC
97072216 TTAAACATTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (20 bp):
CAACATACTATAATCTTTCA
Found at i:97072413 original size:42 final size:42
Alignment explanation
Indices: 97072294--97072422 Score: 136
Period size: 42 Copynumber: 3.0 Consensus size: 42
97072284 CACATAGCAC
* * * *
97072294 CATACCAATGCCATATCCC-GAATATGGTCCTACATGAGATCT
1 CATATCAATGCCATATCCCAG-ATATGGTCTTACACGAAATCT
* * * *
97072336 CATTTCAATGCCAATAGCCTAGCTATGGTCTTACACGAAATCT
1 CATATCAATGCC-ATATCCCAGATATGGTCTTACACGAAATCT
*
97072379 CATATCGATGCCATATCCCAGATATGGTCTTACAC-ATAATCT
1 CATATCAATGCCATATCCCAGATATGGTCTTACACGA-AATCT
97072421 CA
1 CA
97072423 ACTAACCCTA
Statistics
Matches: 71, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
41 1 0.01
42 37 0.52
43 32 0.45
44 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (42 bp):
CATATCAATGCCATATCCCAGATATGGTCTTACACGAAATCT
Found at i:97082927 original size:27 final size:27
Alignment explanation
Indices: 97082895--97083196 Score: 342
Period size: 27 Copynumber: 11.2 Consensus size: 27
97082885 AAAGTACTCC
*
97082895 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
** ** *
97082922 TAATTTTTAAAATTACTGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
* *
97082949 CGATTTACAAAATTACCGTTTTACCC-
1 CGATTTACAGAATTACTGTTTTACCCT
* *
97082975 CTAGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACTGTTTTACCCT
**
97083003 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
97083030 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACTGTTTTACCCT
97083057 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
** *
97083084 CGATTTGTAAAATTACTGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
* * *
97083111 TGATTTATAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
97083138 C-AGTTTACAAAATTA-TCGTTTTACCCT
1 CGA-TTTACAGAATTACT-GTTTTACCCT
* *
97083165 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
97083192 TGATT
1 CGATT
97083197 GTGAAATTAC
Statistics
Matches: 233, Mismatches: 34, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
26 5 0.02
27 224 0.96
28 4 0.02
ACGTcount: A:0.27, C:0.21, G:0.10, T:0.42
Consensus pattern (27 bp):
CGATTTACAGAATTACTGTTTTACCCT
Found at i:97083231 original size:27 final size:27
Alignment explanation
Indices: 97083201--97083395 Score: 189
Period size: 27 Copynumber: 7.2 Consensus size: 27
97083191 TTGATTGTGA
*
97083201 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* * * *
97083228 AATT-TTCGAAATACCCTTATGGGGTAA
1 AATTACT-GAAATACCCTTGTAGGGTAG
* *
97083255 AATTACTGAAATACCCTTATAGGATAG
1 AATTACTGAAATACCCTTGTAGGGTAG
** *
97083282 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
97083309 AATTA-TCGAAATACCCTTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAG
* * * *
97083336 AAATACCGAAATACCCTTTTTGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* * *
97083363 AATTA-TCGAGATACCCTTGTGGGGTAA
1 AATTACT-GAAATACCCTTGTAGGGTAG
97083390 AATTAC
1 AATTAC
97083396 CATTTTGCCC
Statistics
Matches: 135, Mismatches: 27, Indels: 11
0.78 0.16 0.06
Matches are distributed among these distances:
26 1 0.01
27 133 0.99
28 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGTAGGGTAG
Found at i:97083269 original size:54 final size:54
Alignment explanation
Indices: 97083200--97083396 Score: 209
Period size: 54 Copynumber: 3.6 Consensus size: 54
97083190 CTTGATTGTG
* ** *
97083200 AAATTA-CTGAAATACCCCTGTAGGGTAGAATTTTCGAAATACCCTTATGGGGTA
1 AAATTATC-GAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTATAGGGTA
* * * * *
97083254 AAATTA-CTGAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTA
1 AAATTATC-GAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTATAGGGTA
* * * *
97083308 GAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTTTTGGGTA
1 AAATTATCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTATAGGGTA
* * * *
97083362 GAATTATCGAGATACCCTTGTGGGGTAAAATTACC
1 AAATTATCGAAATACCCTTGTAGGGTAGAATTACC
97083397 ATTTTGCCCC
Statistics
Matches: 121, Mismatches: 21, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
54 120 0.99
55 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.28
Consensus pattern (54 bp):
AAATTATCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTATAGGGTA
Found at i:97083302 original size:81 final size:81
Alignment explanation
Indices: 97083209--97083394 Score: 239
Period size: 81 Copynumber: 2.3 Consensus size: 81
97083199 GAAATTACTG
* * *
97083209 AAATACCCCTGTAGGGTAGAATTTTCGAAATACCCTTATGGGGTA-AAATTACTGAAATACCCTT
1 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTATAGGGTAGAAA-TACCGAAATACCCTT
97083273 ATAGGATAGAATTACCA
65 ATAGGATAGAATTACCA
* *
97083290 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTT
1 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTATAGGGTAGAAATACCGAAATACCCTTA
* * * *
97083355 TTGGGTAGAATTATCG
66 TAGGATAGAATTACCA
* * * *
97083371 AGATACCCTTGTGGGGTAAAATTA
1 AAATACCCCTGTAGGGTAGAATTA
97083395 CCATTTTGCC
Statistics
Matches: 91, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
81 88 0.97
82 3 0.03
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (81 bp):
AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTATAGGGTAGAAATACCGAAATACCCTTA
TAGGATAGAATTACCA
Found at i:97083633 original size:27 final size:27
Alignment explanation
Indices: 97083595--97083677 Score: 107
Period size: 27 Copynumber: 3.1 Consensus size: 27
97083585 CGGAGGAAGC
*
97083595 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
97083622 GTTCTGGTGGCTCTGCCA-AAATATCT
1 GTTCTGGTGGCTCTGCCACAAATATCT
* * *
97083648 GTATTTGGTGACTCTGTCAC-AATATCT
1 GT-TCTGGTGGCTCTGCCACAAATATCT
97083675 GTT
1 GTT
97083678 GACCGATCGA
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
26 11 0.22
27 39 0.78
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.37
Consensus pattern (27 bp):
GTTCTGGTGGCTCTGCCACAAATATCT
Found at i:97083797 original size:22 final size:22
Alignment explanation
Indices: 97083765--97083823 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
97083755 CCCGTTATTA
*
97083765 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
97083787 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
97083809 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
97083824 ACATATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:97084036 original size:27 final size:27
Alignment explanation
Indices: 97083988--97084061 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
97083978 TAGGTGGGTT
* * *
97083988 TGCCACATTATCTGATTTTGGTGGCTC
1 TGCCACAATATCTGATTCTGGTGACTC
97084015 TGCCACAATATCT-ATATCTGGTGACTC
1 TGCCACAATATCTGAT-TCTGGTGACTC
* *
97084042 TGTCACGATATCTG-TTCTGG
1 TGCCACAATATCTGATTCTGG
97084062 CAGCCATGCT
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
26 7 0.17
27 33 0.82
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.38
Consensus pattern (27 bp):
TGCCACAATATCTGATTCTGGTGACTC
Found at i:97084213 original size:6 final size:6
Alignment explanation
Indices: 97084204--97084280 Score: 104
Period size: 6 Copynumber: 12.8 Consensus size: 6
97084194 CTGTCACGTA
* *
97084204 ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATACTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG
97084252 ATTCTG -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
97084281 CATTTTGGTT
Statistics
Matches: 63, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
5 4 0.06
6 56 0.89
7 3 0.05
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:97084301 original size:30 final size:30
Alignment explanation
Indices: 97084179--97084280 Score: 159
Period size: 30 Copynumber: 3.4 Consensus size: 30
97084169 TTGCATTCAC
* *
97084179 ATTCTGGTTCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-TAATTCTG
*
97084210 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
*
97084240 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
97084270 ATTCTGATTCT
1 ATTCTGATTCT
97084281 CATTTTGGTT
Statistics
Matches: 66, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
30 46 0.70
31 20 0.30
ACGTcount: A:0.19, C:0.18, G:0.16, T:0.48
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Done.