Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 29 of 349
Found at i:8087924 original size:723 final size:723
Alignment explanation
Indices: 8086538--8088702 Score: 4312
Period size: 723 Copynumber: 3.0 Consensus size: 723
8086528 CATGGCAACG
*
8086538 TGATATGAAATGAATAAGACCATGGTTTAAAGATACCATGGCAACCTGACATGAAATGAGTAAGA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAGTAAGA
8086603 CCATAGTTGAAAGATACCATGGCAACATGACATAAAAATGAATAAGACCATGGTTGAAAGATACC
66 CCATAGTTGAAAGATACCATGGCAACATGACATAAAAATGAATAAGACCATGGTTGAAAGATACC
*
8086668 ATGGCAACATGACAGAAAACGAGTAAAACCATAGTTGAAAGATACTATGACATCATGTCGAAGAT
131 ATGTCAACATGACAGAAAACGAGTAAAACCATAGTTGAAAGATACTATGACATCATGTCGAAGAT
8086733 AAATAAGATCGAGGAAGAGAAACGCCAAGATATCTATTGAACAATCGATATTCAGGTAATATGTA
196 AAATAAGATCGAGGAAGAGAAACGCCAAGATATCTATTGAACAATCGATATTCAGGTAATATGTA
8086798 TCAGATGGAATGGTTATATGAAATGGTTGTGTGAAATGTTTACAGGAATTGGTCATATGGAAATA
261 TCAGATGGAATGGTTATATGAAATGGTTGTGTGAAATGTTTACAGGAATTGGTCATATGGAAATA
8086863 TATGTACAAAATAGTTGTATGAAATAATTAAGAAGATAGATAAATGAAATAAGTATAGGTACATG
326 TATGTACAAAATAGTTGTATGAAATAATTAAGAAGATAGATAAATGAAATAAGTATAGGTACATG
8086928 GAATTTAATTTATGTTAAGTTTAATACGAACTATTACCGAAATAAATATATACAAGATATAAGGA
391 GAATTTAATTTATGTTAAGTTTAATACGAACTATTACCGAAATAAATATATACAAGATATAAGGA
8086993 AATGATGGTGCATGAATTATTGATATAACGAAATGAATGATATATGCTTATGAAGAAACAGTAAG
456 AATGATGGTGCATGAATTATTGATATAACGAAATGAATGATATATGCTTATGAAGAAACAGTAAG
8087058 AGAATAATATATTTTGTGACATGTACATATATAATTATCTTTGATATGTTGATACAAGGAAATTA
521 AGAATAATATATTTTGTGACATGTACATATATAATTATCTTTGATATGTTGATACAAGGAAATTA
8087123 TGTAAGTTGAGACTATTATTAAACTCAAGTGTGATATGTTGAGAAAATAGGTATATCAATGTTGA
586 TGTAAGTTGAGACTATTATTAAACTCAAGTGTGATATGTTGAGAAAATAGGTATATCAATGTTGA
8087188 ATTTATATGAAATATGTGCAAGTATACTAACAATGTTGTTGTTTGACGCTTAGACAAGTGCCAAG
651 ATTTATATGAAATATGTGCAAGTATACTAACAATGTTGTTGTTTGACGCTTAGACAAGTGCCAAG
8087253 CTATGACA
716 CTATGACA
8087261 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAGTAAGA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAGTAAGA
8087326 CCATAGTTGAAAGATACCATGGCAACATGACATAAAAATGAATAAGACCATGGTTGAAAGATACC
66 CCATAGTTGAAAGATACCATGGCAACATGACATAAAAATGAATAAGACCATGGTTGAAAGATACC
8087391 ATGTCAACATGACAGAAAACGAGTAAAACCATAGTTGAAAGATACTATGACATCATGTCGAAGAT
131 ATGTCAACATGACAGAAAACGAGTAAAACCATAGTTGAAAGATACTATGACATCATGTCGAAGAT
8087456 AAATAAGATCGAGGAAGAGAAACGCCAAGATATCTATTGAACAATCGATATTCAGGTAATATGTA
196 AAATAAGATCGAGGAAGAGAAACGCCAAGATATCTATTGAACAATCGATATTCAGGTAATATGTA
8087521 TCAGATGGAATGGTTATATGAAATGGTTGTGTGAAATGTTTACAGGAATTGGTCATATGGAAATA
261 TCAGATGGAATGGTTATATGAAATGGTTGTGTGAAATGTTTACAGGAATTGGTCATATGGAAATA
8087586 TATGTACAAAATAGTTGTATGAAATAATTAAGAAGATAGATAAATGAAATAAGTATAGGTACATG
326 TATGTACAAAATAGTTGTATGAAATAATTAAGAAGATAGATAAATGAAATAAGTATAGGTACATG
8087651 GAATTTAATTTATGTTAAGTTTAATACGAACTATTACCGAAATAAATATATACAAGATATAAGGA
391 GAATTTAATTTATGTTAAGTTTAATACGAACTATTACCGAAATAAATATATACAAGATATAAGGA
8087716 AATGATGGTGCATGAATTATTGATATAACGAAATGAATGATATATGCTTATGAAGAAACAGTAAG
456 AATGATGGTGCATGAATTATTGATATAACGAAATGAATGATATATGCTTATGAAGAAACAGTAAG
8087781 AGAATAATATATTTTGTGACATGTACATATATAATTATCTTTGATATGTTGATACAAGGAAATTA
521 AGAATAATATATTTTGTGACATGTACATATATAATTATCTTTGATATGTTGATACAAGGAAATTA
8087846 TGTAAGTTGAGACTATTATTAAACTCAAGTGTGATATGTTGAGAAAATAGGTATATCAATGTTGA
586 TGTAAGTTGAGACTATTATTAAACTCAAGTGTGATATGTTGAGAAAATAGGTATATCAATGTTGA
8087911 ATTTATATGAAATATGTGCAAGTATACTAACAATGTTGTTGTTTGACGCTTAGACAAGTGCCAAG
651 ATTTATATGAAATATGTGCAAGTATACTAACAATGTTGTTGTTTGACGCTTAGACAAGTGCCAAG
8087976 CTATGACA
716 CTATGACA
8087984 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAGTAAGA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAGTAAGA
8088049 CCATAGTTGAAAGATACCATGGCAACATGACATAAAAATGAATAAGACCATGGTTGAAAGATACC
66 CCATAGTTGAAAGATACCATGGCAACATGACATAAAAATGAATAAGACCATGGTTGAAAGATACC
8088114 ATGTCAACATGACAGAAAACGAGTAAAACCATAGTTGAAAGATACTATGACATCATGTCGAAGAT
131 ATGTCAACATGACAGAAAACGAGTAAAACCATAGTTGAAAGATACTATGACATCATGTCGAAGAT
8088179 AAATAAGATCGAGGAAGAGAAACGCCAAGATATCTATTGAACAATCGATATTCAGGTAATATGTA
196 AAATAAGATCGAGGAAGAGAAACGCCAAGATATCTATTGAACAATCGATATTCAGGTAATATGTA
8088244 TCAGATGGAATGGTTATATGAAATGGTTGTGTGAAATGTTTACAGGAATTGGTCATATGGAAATA
261 TCAGATGGAATGGTTATATGAAATGGTTGTGTGAAATGTTTACAGGAATTGGTCATATGGAAATA
8088309 TATGTACAAAATAGTTGTATGAAATAATTAAGAAGATAGATAAATGAAATAAGTATAGGTACATG
326 TATGTACAAAATAGTTGTATGAAATAATTAAGAAGATAGATAAATGAAATAAGTATAGGTACATG
8088374 GAATTTAATTTATGTTAAGTTTAATACGAACTATTACCGAAATAAATATATACAAGATATAAGGA
391 GAATTTAATTTATGTTAAGTTTAATACGAACTATTACCGAAATAAATATATACAAGATATAAGGA
8088439 AATGATGGTGCATGAATTATTGATATAACGAAATGAATGATATATGCTTATGAAGAAACAGTAAG
456 AATGATGGTGCATGAATTATTGATATAACGAAATGAATGATATATGCTTATGAAGAAACAGTAAG
8088504 AGAATAATATATTTTGTGACATGTACATATATAATTATCTTTGATATGTTGATACAAGGAAATTA
521 AGAATAATATATTTTGTGACATGTACATATATAATTATCTTTGATATGTTGATACAAGGAAATTA
8088569 TGTAAGTTGAGACTATTATTAAACTCAAGTGTGATATGTTGAGAAAATAGGTATATCAATGTTGA
586 TGTAAGTTGAGACTATTATTAAACTCAAGTGTGATATGTTGAGAAAATAGGTATATCAATGTTGA
8088634 ATTTATATGAAATATGTGCAAGTATACTAACAATGTTGTTGTTTGACGCTTAGACAAGTGCCAAG
651 ATTTATATGAAATATGTGCAAGTATACTAACAATGTTGTTGTTTGACGCTTAGACAAGTGCCAAG
8088699 CTAT
716 CTAT
8088703 TGATTGAATG
Statistics
Matches: 1440, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
723 1440 1.00
ACGTcount: A:0.42, C:0.10, G:0.19, T:0.29
Consensus pattern (723 bp):
TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAGTAAGA
CCATAGTTGAAAGATACCATGGCAACATGACATAAAAATGAATAAGACCATGGTTGAAAGATACC
ATGTCAACATGACAGAAAACGAGTAAAACCATAGTTGAAAGATACTATGACATCATGTCGAAGAT
AAATAAGATCGAGGAAGAGAAACGCCAAGATATCTATTGAACAATCGATATTCAGGTAATATGTA
TCAGATGGAATGGTTATATGAAATGGTTGTGTGAAATGTTTACAGGAATTGGTCATATGGAAATA
TATGTACAAAATAGTTGTATGAAATAATTAAGAAGATAGATAAATGAAATAAGTATAGGTACATG
GAATTTAATTTATGTTAAGTTTAATACGAACTATTACCGAAATAAATATATACAAGATATAAGGA
AATGATGGTGCATGAATTATTGATATAACGAAATGAATGATATATGCTTATGAAGAAACAGTAAG
AGAATAATATATTTTGTGACATGTACATATATAATTATCTTTGATATGTTGATACAAGGAAATTA
TGTAAGTTGAGACTATTATTAAACTCAAGTGTGATATGTTGAGAAAATAGGTATATCAATGTTGA
ATTTATATGAAATATGTGCAAGTATACTAACAATGTTGTTGTTTGACGCTTAGACAAGTGCCAAG
CTATGACA
Found at i:8088058 original size:46 final size:46
Alignment explanation
Indices: 8087981--8088158 Score: 241
Period size: 46 Copynumber: 3.8 Consensus size: 46
8087971 CCAAGCTATG
* *
8087981 ACATGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCA
1 ACATGACATGAAATGAATAAGACCATAGTTGAAAGATACCATGGCA
* *
8088027 ACCTGACATGAAATGAGTAAGACCATAGTTGAAAGATACCATGGCA
1 ACATGACATGAAATGAATAAGACCATAGTTGAAAGATACCATGGCA
* * *
8088073 ACATGACATAAAAATGAATAAGACCATGGTTGAAAGATACCATGTCA
1 ACATGACAT-GAAATGAATAAGACCATAGTTGAAAGATACCATGGCA
* * *
8088120 ACATGACA-GAAAACGAGTAAAACCATAGTTGAAAGATAC
1 ACATGACATG-AAATGAATAAGACCATAGTTGAAAGATAC
8088159 TATGACATCA
Statistics
Matches: 116, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
46 75 0.65
47 41 0.35
ACGTcount: A:0.46, C:0.15, G:0.20, T:0.20
Consensus pattern (46 bp):
ACATGACATGAAATGAATAAGACCATAGTTGAAAGATACCATGGCA
Found at i:8089533 original size:25 final size:25
Alignment explanation
Indices: 8089505--8089600 Score: 111
Period size: 25 Copynumber: 3.8 Consensus size: 25
8089495 TGAGCATGTA
* * *
8089505 AACGGGAAGCTCTTCCAAGCTATAT
1 AACGGGAAGCTCATGCGAGCTATAT
* * *
8089530 AACGAGAAGCTCATGTGAGCTAAAT
1 AACGGGAAGCTCATGCGAGCTATAT
*
8089555 AACGGGAAGCTCATGCGAGCTGTAT
1 AACGGGAAGCTCATGCGAGCTATAT
* *
8089580 ATCGGGAAGCTCATGAGAGCT
1 AACGGGAAGCTCATGCGAGCT
8089601 GTGGTGTGTC
Statistics
Matches: 59, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 59 1.00
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.21
Consensus pattern (25 bp):
AACGGGAAGCTCATGCGAGCTATAT
Found at i:8089563 original size:50 final size:50
Alignment explanation
Indices: 8089505--8089600 Score: 129
Period size: 50 Copynumber: 1.9 Consensus size: 50
8089495 TGAGCATGTA
* *
8089505 AACGGGAAGCTCTTCCAAGCTATATAACGAGAAGCTCATGTGAGCTAAAT
1 AACGGGAAGCTCATCCAAGCTATATAACGAGAAGCTCATGAGAGCTAAAT
* * * * *
8089555 AACGGGAAGCTCATGCGAGCTGTATATCGGGAAGCTCATGAGAGCT
1 AACGGGAAGCTCATCCAAGCTATATAACGAGAAGCTCATGAGAGCT
8089601 GTGGTGTGTC
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 39 1.00
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.21
Consensus pattern (50 bp):
AACGGGAAGCTCATCCAAGCTATATAACGAGAAGCTCATGAGAGCTAAAT
Found at i:8089601 original size:25 final size:25
Alignment explanation
Indices: 8089488--8089602 Score: 101
Period size: 25 Copynumber: 4.6 Consensus size: 25
8089478 GTACATGTAT
8089488 GCTCAT-ATGAGCATGTA-AACGGGAA
1 GCTCATGA-GAGC-TGTATAACGGGAA
* * * *
8089513 GCTCTTCCA-AGCTATATAACGAGAA
1 GCTCAT-GAGAGCTGTATAACGGGAA
* **
8089538 GCTCATGTGAGCTAAATAACGGGAA
1 GCTCATGAGAGCTGTATAACGGGAA
* *
8089563 GCTCATGCGAGCTGTATATCGGGAA
1 GCTCATGAGAGCTGTATAACGGGAA
8089588 GCTCATGAGAGCTGT
1 GCTCATGAGAGCTGT
8089603 GGTGTGTCCG
Statistics
Matches: 73, Mismatches: 13, Indels: 8
0.78 0.14 0.09
Matches are distributed among these distances:
24 3 0.04
25 69 0.95
27 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (25 bp):
GCTCATGAGAGCTGTATAACGGGAA
Found at i:8093551 original size:13 final size:13
Alignment explanation
Indices: 8093533--8093557 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8093523 GAAAACGTAA
8093533 AAAAAAGAAAAAG
1 AAAAAAGAAAAAG
8093546 AAAAAAGAAAAA
1 AAAAAAGAAAAA
8093558 AAACCCATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (13 bp):
AAAAAAGAAAAAG
Found at i:8094929 original size:15 final size:15
Alignment explanation
Indices: 8094909--8094949 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
8094899 TAAGAGAGTG
8094909 TAATTACTACTTTAA
1 TAATTACTACTTTAA
* *
8094924 TAATTATTACTCTAA
1 TAATTACTACTTTAA
8094939 TAATTAC-ACTT
1 TAATTACTACTT
8094950 CTATTCAATT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
14 3 0.14
15 19 0.86
ACGTcount: A:0.39, C:0.15, G:0.00, T:0.46
Consensus pattern (15 bp):
TAATTACTACTTTAA
Found at i:8101115 original size:45 final size:42
Alignment explanation
Indices: 8101035--8101117 Score: 105
Period size: 45 Copynumber: 1.9 Consensus size: 42
8101025 TAACACCATT
* *
8101035 TTATTATAATATAACATATATATACACATTTCATATTATTTA
1 TTATTATAATATAACATATATATAAACATTACATATTATTTA
8101077 TTATTATAACATATATACATATATATATAACA-TACATATTA
1 TTATTAT-A-ATATA-ACATATATATA-AACATTACATATTA
8101118 ATGCCGTCTA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
42 7 0.20
43 1 0.03
44 5 0.14
45 19 0.54
46 3 0.09
ACGTcount: A:0.46, C:0.10, G:0.00, T:0.45
Consensus pattern (42 bp):
TTATTATAATATAACATATATATAAACATTACATATTATTTA
Found at i:8103136 original size:31 final size:32
Alignment explanation
Indices: 8103082--8103144 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 32
8103072 TTAATTTTTT
*
8103082 ATAATATCTACTTTACCCCTATTAACT-TTAA
1 ATAATACCTACTTTACCCCTATTAACTCTTAA
***
8103113 ATAATACCTACTTTACGTTTATTAACTCTTAA
1 ATAATACCTACTTTACCCCTATTAACTCTTAA
8103145 TAACTCCTTC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
31 23 0.85
32 4 0.15
ACGTcount: A:0.35, C:0.21, G:0.02, T:0.43
Consensus pattern (32 bp):
ATAATACCTACTTTACCCCTATTAACTCTTAA
Found at i:8103147 original size:31 final size:31
Alignment explanation
Indices: 8103067--8103128 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
8103057 ATAAAATTGT
* ** *
8103067 CCCTATTAATTTTTTATAATATCTACTTTAC
1 CCCTATTAACTTTAAATAATACCTACTTTAC
8103098 CCCTATTAACTTTAAATAATACCTACTTTAC
1 CCCTATTAACTTTAAATAATACCTACTTTAC
8103129 GTTTATTAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.32, C:0.23, G:0.00, T:0.45
Consensus pattern (31 bp):
CCCTATTAACTTTAAATAATACCTACTTTAC
Found at i:8104686 original size:13 final size:13
Alignment explanation
Indices: 8104655--8104700 Score: 53
Period size: 12 Copynumber: 3.8 Consensus size: 13
8104645 AAATTGAAAC
* *
8104655 GAAACAGAGGGAA
1 GAAAGAGAGAGAA
8104668 -AAAGAGAGAGAA
1 GAAAGAGAGAGAA
8104680 GAAAGAGAGA-AA
1 GAAAGAGAGAGAA
8104692 GAAAG-GAGA
1 GAAAGAGAGA
8104701 AAAGTTAGGG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
11 4 0.13
12 17 0.57
13 9 0.30
ACGTcount: A:0.61, C:0.02, G:0.37, T:0.00
Consensus pattern (13 bp):
GAAAGAGAGAGAA
Found at i:8104702 original size:11 final size:12
Alignment explanation
Indices: 8104668--8104702 Score: 54
Period size: 13 Copynumber: 2.9 Consensus size: 12
8104658 ACAGAGGGAA
8104668 AAAGAGAGAGAAG
1 AAAGAGAGA-AAG
8104681 AAAGAGAGAAAG
1 AAAGAGAGAAAG
8104693 AAAG-GAGAAA
1 AAAGAGAGAAA
8104703 AGTTAGGGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 6 0.27
12 7 0.32
13 9 0.41
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (12 bp):
AAAGAGAGAAAG
Found at i:8113175 original size:22 final size:22
Alignment explanation
Indices: 8113150--8113192 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
8113140 AATTTAGTTG
8113150 TAAAATAAAA-ATTATTATTTTA
1 TAAAATAAAATA-TATTATTTTA
8113172 TAAAATAAAATATATTATTTT
1 TAAAATAAAATATATTATTTT
8113193 GAATTTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 19 0.95
23 1 0.05
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
TAAAATAAAATATATTATTTTA
Found at i:8114775 original size:24 final size:27
Alignment explanation
Indices: 8114742--8114792 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 27
8114732 GTGAGGGGAA
8114742 ATTATATTATGGATT-TTTTT-ATTAT
1 ATTATATTATGGATTATTTTTAATTAT
8114767 ATTAT-TTATGGATTATTTTTAATTAT
1 ATTATATTATGGATTATTTTTAATTAT
8114793 TTAATGATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
24 9 0.38
25 10 0.42
26 5 0.21
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (27 bp):
ATTATATTATGGATTATTTTTAATTAT
Found at i:8114793 original size:24 final size:25
Alignment explanation
Indices: 8114742--8114793 Score: 72
Period size: 24 Copynumber: 2.1 Consensus size: 25
8114732 GTGAGGGGAA
*
8114742 ATTATATTATGGATTTTTTTATTAT
1 ATTATATTATGGATTTTTTTAATAT
8114767 ATTAT-TTATGGATTATTTTTAAT-T
1 ATTATATTATGGATT-TTTTTAATAT
8114791 ATT
1 ATT
8114794 TAATGATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 13 0.52
25 12 0.48
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (25 bp):
ATTATATTATGGATTTTTTTAATAT
Found at i:8114931 original size:20 final size:20
Alignment explanation
Indices: 8114875--8114945 Score: 63
Period size: 20 Copynumber: 3.5 Consensus size: 20
8114865 TTAAACCTTA
* *
8114875 AACCTTAAACTTCGAACTCTG
1 AACCCTAAACTTTGAACT-TG
* *
8114896 AATCCTAAA-TCATGAACTTG
1 AACCCTAAACT-TTGAACTTG
*
8114916 AACCCTAAACTTTGAACCTG
1 AACCCTAAACTTTGAACTTG
*
8114936 AACTCTAAAC
1 AACCCTAAAC
8114946 CTTAAATTTT
Statistics
Matches: 40, Mismatches: 8, Indels: 5
0.75 0.15 0.09
Matches are distributed among these distances:
20 27 0.68
21 13 0.32
ACGTcount: A:0.38, C:0.27, G:0.08, T:0.27
Consensus pattern (20 bp):
AACCCTAAACTTTGAACTTG
Found at i:8115248 original size:18 final size:19
Alignment explanation
Indices: 8115220--8115259 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
8115210 TGTAATTTAA
**
8115220 ATTTGTAGTTTTTTTTCAT
1 ATTTGTAGTTTAATTTCAT
8115239 ATTT-TAGTTTAATTTCAT
1 ATTTGTAGTTTAATTTCAT
8115257 ATT
1 ATT
8115260 ACCATTGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.23, C:0.05, G:0.07, T:0.65
Consensus pattern (19 bp):
ATTTGTAGTTTAATTTCAT
Found at i:8115390 original size:3 final size:3
Alignment explanation
Indices: 8115382--8115409 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
8115372 GATCATTGCC
8115382 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
8115410 TGTGTTTAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:8116173 original size:3 final size:3
Alignment explanation
Indices: 8116165--8116197 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
8116155 CTCGAACTAA
8116165 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8116198 CTTGATGTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:8116873 original size:9 final size:9
Alignment explanation
Indices: 8116859--8116892 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
8116849 AAAATTGGGT
8116859 AATTAACCG
1 AATTAACCG
*
8116868 AATTAACTG
1 AATTAACCG
8116877 AATTAACCG
1 AATTAACCG
8116886 AACTTAA
1 AA-TTAA
8116893 TAAATAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 18 0.82
10 4 0.18
ACGTcount: A:0.47, C:0.18, G:0.09, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:8120711 original size:17 final size:17
Alignment explanation
Indices: 8120689--8120726 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
8120679 AGAATATAAA
8120689 TAAGTTAATTTAATAGT
1 TAAGTTAATTTAATAGT
8120706 TAAGTTAATTTAATAGT
1 TAAGTTAATTTAATAGT
8120723 TAAG
1 TAAG
8120727 GTAAAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (17 bp):
TAAGTTAATTTAATAGT
Found at i:8121292 original size:18 final size:18
Alignment explanation
Indices: 8121271--8121331 Score: 59
Period size: 18 Copynumber: 3.2 Consensus size: 18
8121261 ACGATGCTAT
*
8121271 TGAAGAAGACGATGAAGA
1 TGAAGAAGAAGATGAAGA
*
8121289 TGAAGATGAAGATGAAGA
1 TGAAGAAGAAGATGAAGA
* *
8121307 CGAATACGAAGAAGACGAAGA
1 TG-A-A-GAAGAAGATGAAGA
8121328 TGAA
1 TGAA
8121332 AACGACGACG
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
18 17 0.50
19 2 0.06
20 2 0.06
21 13 0.38
ACGTcount: A:0.51, C:0.07, G:0.31, T:0.11
Consensus pattern (18 bp):
TGAAGAAGAAGATGAAGA
Found at i:8121305 original size:27 final size:26
Alignment explanation
Indices: 8121275--8121336 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
8121265 TGCTATTGAA
* *
8121275 GAAGACGATGAAGATGAAGATGAAGAT
1 GAAGACGAT-AAGAAGAAGACGAAGAT
*
8121302 GAAGACGAATACGAAGAAGACGAAGAT
1 GAAGACG-ATAAGAAGAAGACGAAGAT
*
8121329 GAAAACGA
1 GAAGACGA
8121337 CGACGTCTTG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
26 1 0.03
27 27 0.90
28 2 0.07
ACGTcount: A:0.52, C:0.08, G:0.31, T:0.10
Consensus pattern (26 bp):
GAAGACGATAAGAAGAAGACGAAGAT
Found at i:8121320 original size:21 final size:21
Alignment explanation
Indices: 8121296--8121336 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
8121286 AGATGAAGAT
* *
8121296 GAAGATGAAGACGAATACGAA
1 GAAGACGAAGACGAAAACGAA
*
8121317 GAAGACGAAGATGAAAACGA
1 GAAGACGAAGACGAAAACGA
8121337 CGACGTCTTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.54, C:0.10, G:0.29, T:0.07
Consensus pattern (21 bp):
GAAGACGAAGACGAAAACGAA
Found at i:8121326 original size:6 final size:6
Alignment explanation
Indices: 8121271--8121306 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
8121261 ACGATGCTAT
* *
8121271 TGAAGA AGACGA TGAAGA TGAAGA TGAAGA TGAAGA
1 TGAAGA TGAAGA TGAAGA TGAAGA TGAAGA TGAAGA
8121307 CGAATACGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.33, T:0.14
Consensus pattern (6 bp):
TGAAGA
Found at i:8121336 original size:12 final size:12
Alignment explanation
Indices: 8121284--8121336 Score: 52
Period size: 12 Copynumber: 4.2 Consensus size: 12
8121274 AGAAGACGAT
*
8121284 GAAGATGAAGAT
1 GAAGATGAAGAC
8121296 GAAGATGAAGAC
1 GAAGATGAAGAC
*
8121308 GAATACGAAGAAGAC
1 G-A-A-GATGAAGAC
*
8121323 GAAGATGAAAAC
1 GAAGATGAAGAC
8121335 GA
1 GA
8121337 CGACGTCTTG
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
12 21 0.62
13 2 0.06
14 2 0.06
15 9 0.26
ACGTcount: A:0.53, C:0.08, G:0.30, T:0.09
Consensus pattern (12 bp):
GAAGATGAAGAC
Found at i:8123741 original size:28 final size:28
Alignment explanation
Indices: 8123701--8123756 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
8123691 AGCATTAATG
*
8123701 GTGCAATTGACTGCTAGATGGAAGTTTA
1 GTGCAATTGACTGCCAGATGGAAGTTTA
8123729 GTGCAATTGACTGCCAGATGGAAGTTTA
1 GTGCAATTGACTGCCAGATGGAAGTTTA
8123757 CGTATTGTGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.30
Consensus pattern (28 bp):
GTGCAATTGACTGCCAGATGGAAGTTTA
Found at i:8128909 original size:12 final size:12
Alignment explanation
Indices: 8128890--8128920 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
8128880 CTAAATCTTC
8128890 TCCCCTTTCCCT
1 TCCCCTTTCCCT
*
8128902 TTCCCTTTCCCT
1 TCCCCTTTCCCT
8128914 TCCCCTT
1 TCCCCTT
8128921 GGGTTGCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45
Consensus pattern (12 bp):
TCCCCTTTCCCT
Found at i:8129953 original size:84 final size:84
Alignment explanation
Indices: 8129812--8129983 Score: 272
Period size: 84 Copynumber: 2.0 Consensus size: 84
8129802 TTGTAGGCTA
*
8129812 TATTAATATAGATGTAATGTAATTTAGCTAATGACAAAGAAGATGGTTCAAATTTGAACTAGTTT
1 TATTAATATAGATGTAATGTAATTCAGCTAATGACAAAGAAGATGGTTCAAATTTGAACTAGTTT
*
8129877 TGCATATTCATTTTGATTT
66 TGCATATTCATTTTGATTC
* * * * *
8129896 TATTAATATAGATGTAATGTAATTCAGTTGATGCCAGAGAAGATGGTTCAAATTTGAACTGGTTT
1 TATTAATATAGATGTAATGTAATTCAGCTAATGACAAAGAAGATGGTTCAAATTTGAACTAGTTT
*
8129961 TGCATCTTCATTTTGATTC
66 TGCATATTCATTTTGATTC
8129980 TATT
1 TATT
8129984 GGCAATAATA
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
84 80 1.00
ACGTcount: A:0.33, C:0.09, G:0.17, T:0.42
Consensus pattern (84 bp):
TATTAATATAGATGTAATGTAATTCAGCTAATGACAAAGAAGATGGTTCAAATTTGAACTAGTTT
TGCATATTCATTTTGATTC
Found at i:8130491 original size:16 final size:15
Alignment explanation
Indices: 8130464--8130502 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
8130454 GTTTCATTTA
*
8130464 AAATAGTTTTTTTT-
1 AAATATTTTTTTTTG
8130478 AAATAGTTTTTTTTTG
1 AAATA-TTTTTTTTTG
8130494 AAATATTTT
1 AAATATTTT
8130503 CAAGAAAGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 5 0.23
15 12 0.55
16 5 0.23
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (15 bp):
AAATATTTTTTTTTG
Found at i:8130502 original size:14 final size:14
Alignment explanation
Indices: 8130464--8130491 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8130454 GTTTCATTTA
8130464 AAATAGTTTTTTTT
1 AAATAGTTTTTTTT
8130478 AAATAGTTTTTTTT
1 AAATAGTTTTTTTT
8130492 TGAAATATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.64
Consensus pattern (14 bp):
AAATAGTTTTTTTT
Found at i:8130544 original size:106 final size:105
Alignment explanation
Indices: 8130403--8130607 Score: 315
Period size: 106 Copynumber: 1.9 Consensus size: 105
8130393 CACTTTGTTT
8130403 AGTGAACTTAGCTAAACAATTAAATGAAAAGAAAAACTCAAATATATGTTTGTTTCATTTAAAAT
1 AGTGAACTTAGCTAAACAATTAAATGAAAAGAAAAACTCAAATATATGTTTGTTTCATTTAAAAT
*
8130468 AG-TTTTTTTTAAATAGTTTTTTTTTGAAATATTTTCAAGAA
66 AGCTTTTTTTAAAATAG--TTTTTTTGAAATATTTTCAAGAA
* * * * *
8130509 AGTGAATTTAGCTAAACAATTAACA-GACAAGAAAAATTCAAATGTATGTTTGTTTCGTTTAAAA
1 AGTGAACTTAGCTAAACAATTAA-ATGAAAAGAAAAACTCAAATATATGTTTGTTTCATTTAAAA
8130573 TAGCTTTTTTTAAAATAGTTTTTTTGAAATATTTT
65 TAGCTTTTTTTAAAATAGTTTTTTTGAAATATTTT
8130608 TAGGAAATCT
Statistics
Matches: 91, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
105 17 0.19
106 60 0.66
107 14 0.15
ACGTcount: A:0.40, C:0.07, G:0.11, T:0.42
Consensus pattern (105 bp):
AGTGAACTTAGCTAAACAATTAAATGAAAAGAAAAACTCAAATATATGTTTGTTTCATTTAAAAT
AGCTTTTTTTAAAATAGTTTTTTTGAAATATTTTCAAGAA
Found at i:8130607 original size:13 final size:14
Alignment explanation
Indices: 8130566--8130608 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
8130556 GTTTGTTTCG
8130566 TTTAAAATAGCTTTT
1 TTTAAAATAG-TTTT
8130581 TTTAAAATAGTTTT
1 TTTAAAATAGTTTT
*
8130595 TTTGAAATA-TTTT
1 TTTAAAATAGTTTT
8130608 T
1 T
8130609 AGGAAATCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
13 5 0.19
14 12 0.44
15 10 0.37
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.58
Consensus pattern (14 bp):
TTTAAAATAGTTTT
Found at i:8132223 original size:15 final size:13
Alignment explanation
Indices: 8132168--8132210 Score: 59
Period size: 13 Copynumber: 3.2 Consensus size: 13
8132158 CTAATATGTG
* *
8132168 AAAAATAAATTTA
1 AAAAATATATATA
8132181 AAATAATATATATA
1 AAA-AATATATATA
8132195 AAAAATATATATA
1 AAAAATATATATA
8132208 AAA
1 AAA
8132211 CAATTTAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
13 16 0.59
14 11 0.41
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (13 bp):
AAAAATATATATA
Found at i:8132231 original size:24 final size:23
Alignment explanation
Indices: 8132203--8132301 Score: 67
Period size: 24 Copynumber: 4.1 Consensus size: 23
8132193 TAAAAAATAT
8132203 ATATAAAACAATTTAATATAAGTA
1 ATATAAAACAATTTAA-ATAAGTA
** *
8132227 ATATATGA-AATCTTAAAGTAAATA
1 ATATAAAACAAT-TTAAA-TAAGTA
* *
8132251 ATAATAGAACGATTTAAAATAAGTA
1 AT-ATAAAACAATTT-AAATAAGTA
* *
8132276 ATATAAAA-AACTTAGAATAAATA
1 ATATAAAACAATTTA-AATAAGTA
8132299 ATA
1 ATA
8132302 GTTACAAACA
Statistics
Matches: 58, Mismatches: 11, Indels: 13
0.71 0.13 0.16
Matches are distributed among these distances:
22 1 0.02
23 17 0.29
24 22 0.38
25 13 0.22
26 5 0.09
ACGTcount: A:0.59, C:0.04, G:0.07, T:0.30
Consensus pattern (23 bp):
ATATAAAACAATTTAAATAAGTA
Found at i:8134843 original size:18 final size:20
Alignment explanation
Indices: 8134801--8134837 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8134791 ACATTTTATG
*
8134801 ATTA-TTTAATTAGATATAT
1 ATTATTTTAATGAGATATAT
8134820 ATTATTTTAATGAGATAT
1 ATTATTTTAATGAGATAT
8134838 TTTATTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (20 bp):
ATTATTTTAATGAGATATAT
Found at i:8137048 original size:46 final size:46
Alignment explanation
Indices: 8137001--8137228 Score: 278
Period size: 46 Copynumber: 5.0 Consensus size: 46
8136991 GCTCTCTGAT
* * * *
8137001 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCCTGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
8137047 ATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * * * *
8137093 GGGAAATAAATAAGACCATGGTTGAAAGATACCATGGCAGCGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
8137139 ATGAAATGAATAAGACCATGATTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
8137185 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
8137229 TCAAAGATAA
Statistics
Matches: 157, Mismatches: 24, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
45 1 0.01
46 156 0.99
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.20
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:8137164 original size:92 final size:92
Alignment explanation
Indices: 8137011--8137223 Score: 309
Period size: 92 Copynumber: 2.3 Consensus size: 92
8137001 ATGAAATGTG
* ** *
8137011 TAAGACCATGGTTGAAAGATACCATGGCAGCCTGATATGAAACGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAGCCTGACATGAAACGAATAAGACCATGATTGAAAGA
* *
8137076 TACCATGGCAACATGACGGGAAATAAA
66 TACCATGGCAACATGACAGAAAATAAA
* *
8137103 TAAGACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAATGAATAAGACCATGATTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAGCCTGACATGAAACGAATAAGACCATGATTGAAAGA
* *
8137168 TACCATGGCAACATGACAGAAAATGAG
66 TACCATGGCAACATGACAGAAAATAAA
* * *
8137195 TAAGACCATAGTTGAAAGACACTATGGCA
1 TAAGACCATGGTTGAAAGATACCATGGCA
8137224 TCATGTCAAA
Statistics
Matches: 108, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
92 108 1.00
ACGTcount: A:0.41, C:0.16, G:0.24, T:0.19
Consensus pattern (92 bp):
TAAGACCATGGTTGAAAGATACCATGGCAGCCTGACATGAAACGAATAAGACCATGATTGAAAGA
TACCATGGCAACATGACAGAAAATAAA
Found at i:8147479 original size:21 final size:21
Alignment explanation
Indices: 8147415--8147479 Score: 60
Period size: 21 Copynumber: 3.1 Consensus size: 21
8147405 AGTTAACTTA
*
8147415 TATGAGTTTCAGTTTAACCC-
1 TATGAGTTTCCGTTTAACCCT
* * * *
8147435 TATTGGGTTTCCGTTCAGCTCT
1 TA-TGAGTTTCCGTTTAACCCT
*
8147457 TATGAGCTTCCGTTTAACCCT
1 TATGAGTTTCCGTTTAACCCT
8147478 TA
1 TA
8147480 CGGGTTTCTA
Statistics
Matches: 33, Mismatches: 10, Indels: 3
0.72 0.22 0.07
Matches are distributed among these distances:
20 2 0.06
21 29 0.88
22 2 0.06
ACGTcount: A:0.18, C:0.23, G:0.17, T:0.42
Consensus pattern (21 bp):
TATGAGTTTCCGTTTAACCCT
Found at i:8147501 original size:42 final size:42
Alignment explanation
Indices: 8147415--8147502 Score: 97
Period size: 42 Copynumber: 2.1 Consensus size: 42
8147405 AGTTAACTTA
* * * *
8147415 TATGAGTTTCAGTTTAACCCTATTGGGTTTCCGTTCAGCTCT
1 TATGAGCTTCAGTTTAACCCTATCGGGTTTCCATTCAGCACT
* * *
8147457 TATGAGCTTCCGTTTAACCCT-TACGGGTTTCTATTTAGCACT
1 TATGAGCTTCAGTTTAACCCTAT-CGGGTTTCCATTCAGCACT
8147499 TATG
1 TATG
8147503 TCTTTAGTGC
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
41 1 0.03
42 37 0.97
ACGTcount: A:0.18, C:0.22, G:0.18, T:0.42
Consensus pattern (42 bp):
TATGAGCTTCAGTTTAACCCTATCGGGTTTCCATTCAGCACT
Found at i:8153750 original size:16 final size:16
Alignment explanation
Indices: 8153717--8153763 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
8153707 TCAATATATA
*
8153717 TATATATTTCA-AAATT
1 TATATATTT-AGAATTT
8153733 TATATATTTAGAATTT
1 TATATATTTAGAATTT
*
8153749 TATAATTTTTAGAAT
1 TAT-ATATTTAGAAT
8153764 ACCATATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
15 1 0.04
16 16 0.59
17 10 0.37
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.53
Consensus pattern (16 bp):
TATATATTTAGAATTT
Found at i:8154943 original size:3 final size:3
Alignment explanation
Indices: 8154935--8155060 Score: 96
Period size: 3 Copynumber: 41.3 Consensus size: 3
8154925 ATATACTATA
* * * *
8154935 AAT AAT AAT AAT AGAA AAT AAT AAT AGT ACT AAT AGT AAT AAT AAT
1 AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
8154981 GAT GAT AAT AAT ATAT AAT ATAT AAA AAA AAT AA- AA- AAT AAT GAT
1 AAT AAT AAT AAT A-AT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
*
8155026 ATT AAT ACAT AA- ATAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT A-AT AAT A-AT AAT AAT AAT AAT AAT AAT A
8155061 GTAAAAGTTT
Statistics
Matches: 101, Mismatches: 15, Indels: 14
0.78 0.12 0.11
Matches are distributed among these distances:
2 5 0.05
3 84 0.83
4 12 0.12
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:8155236 original size:15 final size:15
Alignment explanation
Indices: 8155206--8155268 Score: 58
Period size: 15 Copynumber: 4.1 Consensus size: 15
8155196 TAAATAGAAA
8155206 TAGAAATATAATAATAG
1 TAGAAATA-AA-AATAG
8155223 TAGAAATAAAAATAG
1 TAGAAATAAAAATAG
*
8155238 -ATAAATAAAAATTAG
1 TAGAAATAAAAA-TAG
* *
8155253 -ATAAATAATAATAG
1 TAGAAATAAAAATAG
8155267 TA
1 TA
8155269 TTAGAATAAC
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
14 13 0.31
15 19 0.45
16 2 0.05
17 8 0.19
ACGTcount: A:0.63, C:0.00, G:0.10, T:0.27
Consensus pattern (15 bp):
TAGAAATAAAAATAG
Found at i:8155258 original size:29 final size:29
Alignment explanation
Indices: 8155194--8155266 Score: 78
Period size: 29 Copynumber: 2.5 Consensus size: 29
8155184 AATATTAGTA
* *
8155194 TATAAATAGAAATAGAAATATAATAATAG
1 TATAAATAAAAATAGAAATATAAAAATAG
*
8155223 TAGAAATAAAAATAGATAA-ATAAAAATTAG
1 TATAAATAAAAATAGA-AATATAAAAA-TAG
*
8155253 -ATAAATAATAATAG
1 TATAAATAAAAATAG
8155267 TATTAGAATA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
29 32 0.86
30 5 0.14
ACGTcount: A:0.64, C:0.00, G:0.10, T:0.26
Consensus pattern (29 bp):
TATAAATAAAAATAGAAATATAAAAATAG
Found at i:8159561 original size:27 final size:26
Alignment explanation
Indices: 8159527--8159612 Score: 63
Period size: 26 Copynumber: 3.3 Consensus size: 26
8159517 TGTTATATGA
8159527 CATTAGCAAGTGGACCTTATGAAATC
1 CATTAGCAAGTGGACCTTATGAAATC
* * * * *
8159553 CATTCAGC-ATTAGA-ATGT-T-ATATGA
1 CATT-AGCAAGTGGACCT-TATGAAAT-C
8159578 CATTAGCAAGTGGACCTTATGAAATC
1 CATTAGCAAGTGGACCTTATGAAATC
8159604 CATTCAGCA
1 CATT-AGCA
8159613 TGATTGGTGG
Statistics
Matches: 42, Mismatches: 10, Indels: 15
0.63 0.15 0.22
Matches are distributed among these distances:
24 6 0.14
25 11 0.26
26 15 0.36
27 10 0.24
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (26 bp):
CATTAGCAAGTGGACCTTATGAAATC
Found at i:8159587 original size:51 final size:51
Alignment explanation
Indices: 8159511--8159613 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
8159501 TGTGATAAAC
8159511 TTAGAATGTTATATGACATTAGCAAGTGGACCTTATGAAATCCATTCAGCA
1 TTAGAATGTTATATGACATTAGCAAGTGGACCTTATGAAATCCATTCAGCA
8159562 TTAGAATGTTATATGACATTAGCAAGTGGACCTTATGAAATCCATTCAGCA
1 TTAGAATGTTATATGACATTAGCAAGTGGACCTTATGAAATCCATTCAGCA
8159613 T
1 T
8159614 GATTGGTGGT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (51 bp):
TTAGAATGTTATATGACATTAGCAAGTGGACCTTATGAAATCCATTCAGCA
Found at i:8165227 original size:3 final size:3
Alignment explanation
Indices: 8165219--8165256 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
8165209 GTAAAAGTAC
* *
8165219 TCT TCT TCT TCT TCT TTT TCT TCC TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
8165257 GACTACTTGA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:8165693 original size:7 final size:7
Alignment explanation
Indices: 8165638--8165690 Score: 79
Period size: 7 Copynumber: 7.6 Consensus size: 7
8165628 GGGGCTCTAT
8165638 TGAAAGG
1 TGAAAGG
8165645 TGAAAGG
1 TGAAAGG
8165652 TGAAAGG
1 TGAAAGG
8165659 TGAAAGG
1 TGAAAGG
*
8165666 TGAATGG
1 TGAAAGG
*
8165673 TGAATGG
1 TGAAAGG
*
8165680 TGAATGG
1 TGAAAGG
8165687 TGAA
1 TGAA
8165691 TGGATCATTT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
7 45 1.00
ACGTcount: A:0.38, C:0.00, G:0.42, T:0.21
Consensus pattern (7 bp):
TGAAAGG
Found at i:8179938 original size:25 final size:25
Alignment explanation
Indices: 8179887--8179938 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
8179877 TTTGGCTTGA
* *
8179887 CATTTACTATGCAATATCAGATATT
1 CATTTACTAAGCAATATCAAATATT
* *
8179912 CATTTATTAAGCAATATCAAATGTT
1 CATTTACTAAGCAATATCAAATATT
8179937 CA
1 CA
8179939 AATTATTTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (25 bp):
CATTTACTAAGCAATATCAAATATT
Found at i:8181197 original size:10 final size:10
Alignment explanation
Indices: 8181182--8181213 Score: 64
Period size: 10 Copynumber: 3.2 Consensus size: 10
8181172 CAGCTGATGA
8181182 AAATGAAGAG
1 AAATGAAGAG
8181192 AAATGAAGAG
1 AAATGAAGAG
8181202 AAATGAAGAG
1 AAATGAAGAG
8181212 AA
1 AA
8181214 TTCTAGATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.62, C:0.00, G:0.28, T:0.09
Consensus pattern (10 bp):
AAATGAAGAG
Found at i:8183554 original size:31 final size:32
Alignment explanation
Indices: 8183506--8183577 Score: 87
Period size: 31 Copynumber: 2.3 Consensus size: 32
8183496 GATATTTTGA
*
8183506 TATTTTA-TAATTATTTAATTAGATA-AATAT
1 TATTTTATTAATTATTTAATAAGATATAATAT
**
8183536 TATTTTATTAA-TATTTTAATAAGATATTTTAT
1 TATTTTATTAATTA-TTTAATAAGATATAATAT
8183568 TATTTTATTA
1 TATTTTATTA
8183578 GTATATAAAG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
30 9 0.25
31 14 0.39
32 13 0.36
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (32 bp):
TATTTTATTAATTATTTAATAAGATATAATAT
Found at i:8185656 original size:46 final size:46
Alignment explanation
Indices: 8185388--8185646 Score: 367
Period size: 46 Copynumber: 5.6 Consensus size: 46
8185378 GCTCTCTGAA
* *
8185388 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
8185434 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
8185480 ATGAAATGTGTAAGACCATGGTTGTAAGATAACATGGCAACGTGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
8185526 ATGAAAAGAATAAGACCATGGTTGAGAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** *
8185572 GGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
8185618 A-GAAAATGAGTAAGACCATAGTTGAAAGA
1 ATG-AAATGAGTAAGACCATGGTTGAAAGA
8185647 CATTATGGCA
Statistics
Matches: 194, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.01
46 193 0.99
ACGTcount: A:0.41, C:0.13, G:0.25, T:0.21
Consensus pattern (46 bp):
ATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:8187567 original size:23 final size:24
Alignment explanation
Indices: 8187534--8187582 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
8187524 AAATTTCGGA
8187534 ATTTATAATTTTTATA-ACTTATAT
1 ATTTATAATTTTTATAGA-TTATAT
*
8187558 ATTTA-AATTTTTTTAGATTATAT
1 ATTTATAATTTTTATAGATTATAT
8187581 AT
1 AT
8187583 ATTTTAATCT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 17 0.74
24 6 0.26
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (24 bp):
ATTTATAATTTTTATAGATTATAT
Found at i:8191261 original size:15 final size:16
Alignment explanation
Indices: 8191240--8191279 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 16
8191230 AAGAGAATGG
8191240 AAAATAAAGGG-GAAA
1 AAAATAAAGGGAGAAA
*
8191255 GAAATAAGAGGGAGAAA
1 AAAATAA-AGGGAGAAA
8191272 AAAATAAA
1 AAAATAAA
8191280 ATTCTATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 6 0.29
16 5 0.24
17 10 0.48
ACGTcount: A:0.68, C:0.00, G:0.25, T:0.07
Consensus pattern (16 bp):
AAAATAAAGGGAGAAA
Found at i:8191742 original size:11 final size:11
Alignment explanation
Indices: 8191726--8191765 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
8191716 TTATTTTTCC
8191726 CTATTTTGCTA
1 CTATTTTGCTA
*
8191737 CTATTTTACTA
1 CTATTTTGCTA
* *
8191748 TTATGTTGCTA
1 CTATTTTGCTA
8191759 CTATTTT
1 CTATTTT
8191766 ATTGTTGTTG
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.20, C:0.15, G:0.07, T:0.57
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:8191839 original size:30 final size:30
Alignment explanation
Indices: 8191803--8191865 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
8191793 ATTTATTTTA
8191803 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
* *
8191833 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
8191863 TTG
1 TTG
8191866 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.25, C:0.03, G:0.14, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:8191968 original size:18 final size:18
Alignment explanation
Indices: 8191947--8191986 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
8191937 GAAATATTTA
*
8191947 TTTTGATGT-TTTTAGTAT
1 TTTTGATGTATTATA-TAT
8191965 TTTTGATGTATTATATAT
1 TTTTGATGTATTATATAT
8191983 TTTT
1 TTTT
8191987 TAAAATTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.20, C:0.00, G:0.12, T:0.68
Consensus pattern (18 bp):
TTTTGATGTATTATATAT
Found at i:8193200 original size:2 final size:2
Alignment explanation
Indices: 8193195--8193222 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8193185 TTTAATATGA
8193195 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8193223 CTATTAATGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8194497 original size:39 final size:38
Alignment explanation
Indices: 8194380--8194508 Score: 115
Period size: 36 Copynumber: 3.4 Consensus size: 38
8194370 GATCCGATTG
* *
8194380 AAACACGAGAATTTCTTGTTTTGAAAACACGAGAATTTTA
1 AAACACGAG-ATTT-TTTTTTTGAAAACACGAAAATTTTA
* * * *
8194420 AGACA-TA-ATATTTTTTTT-AAAAC-C-AAAATTTATG
1 AAACACGAGATTTTTTTTTTGAAAACACGAAAATTT-TA
8194454 AAACACGAGATTTTTTTTTTGAAAACACGAAAATTTTCA
1 AAACACGAGATTTTTTTTTTGAAAACACGAAAATTTT-A
*
8194493 AAACACCGAAATTTTT
1 AAACA-CGAGATTTTT
8194509 GAAAACAAGA
Statistics
Matches: 70, Mismatches: 11, Indels: 16
0.72 0.11 0.16
Matches are distributed among these distances:
33 6 0.09
34 6 0.09
35 6 0.09
36 16 0.23
37 8 0.11
38 2 0.03
39 13 0.19
40 13 0.19
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.36
Consensus pattern (38 bp):
AAACACGAGATTTTTTTTTTGAAAACACGAAAATTTTA
Found at i:8194515 original size:35 final size:34
Alignment explanation
Indices: 8194469--8194629 Score: 175
Period size: 35 Copynumber: 4.7 Consensus size: 34
8194459 CGAGATTTTT
**
8194469 TTTTTGAAAACACGAAAATTTTCAAAACACCGAAA
1 TTTTTGAAAACACGAAAATTTTTGAAACA-CGAAA
* ** *
8194504 TTTTTGAAAACAAGAGGATTTTTGAAATACGAAAA
1 TTTTTGAAAACACGAAAATTTTTGAAACACG-AAA
*
8194539 ATTTTGAAAACACGAAAATTTTTGAAACACGGAAA
1 TTTTTGAAAACACGAAAATTTTTGAAACAC-GAAA
8194574 TTTTTG-AAA-ACGAAAATTTTTGAAACAC-AAA
1 TTTTTGAAAACACGAAAATTTTTGAAACACGAAA
* * *
8194605 TTTTTAGAAGACACTAAAAATTTTG
1 TTTTT-GAAAACACGAAAATTTTTG
8194630 GAAAATAGAT
Statistics
Matches: 106, Mismatches: 15, Indels: 11
0.80 0.11 0.08
Matches are distributed among these distances:
31 8 0.08
32 1 0.01
33 21 0.20
34 16 0.15
35 59 0.56
36 1 0.01
ACGTcount: A:0.47, C:0.11, G:0.12, T:0.30
Consensus pattern (34 bp):
TTTTTGAAAACACGAAAATTTTTGAAACACGAAA
Found at i:8194609 original size:16 final size:17
Alignment explanation
Indices: 8194469--8194629 Score: 150
Period size: 17 Copynumber: 9.4 Consensus size: 17
8194459 CGAGATTTTT
8194469 TTTTTGAAAACACGAAAA
1 TTTTTG-AAACACGAAAA
**
8194487 TTTTCAAAACACCG-AAA
1 TTTTTGAAACA-CGAAAA
* **
8194504 TTTTTGAAAACAAGAGGA
1 TTTTTG-AAACACGAAAA
*
8194522 TTTTTGAAATACGAAAA
1 TTTTTGAAACACGAAAA
*
8194539 ATTTTGAAAACACGAAAA
1 TTTTTG-AAACACGAAAA
*
8194557 TTTTTGAAACACGGAAA
1 TTTTTGAAACACGAAAA
8194574 TTTTTGAAA-ACGAAAA
1 TTTTTGAAACACGAAAA
8194590 TTTTTGAAACAC--AAA
1 TTTTTGAAACACGAAAA
*
8194605 TTTTTAGAAGACACTAAAA
1 TTTTT-GAA-ACACGAAAA
*
8194624 ATTTTG
1 TTTTTG
8194630 GAAAATAGAT
Statistics
Matches: 117, Mismatches: 17, Indels: 18
0.77 0.11 0.12
Matches are distributed among these distances:
15 8 0.07
16 18 0.15
17 50 0.43
18 34 0.29
19 7 0.06
ACGTcount: A:0.47, C:0.11, G:0.12, T:0.30
Consensus pattern (17 bp):
TTTTTGAAACACGAAAA
Found at i:8194845 original size:20 final size:19
Alignment explanation
Indices: 8194807--8194853 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
8194797 CGAATATATT
8194807 TTTTTGAAACACGAGAAAAA
1 TTTTTGAAACACG-GAAAAA
*
8194827 TTTTTGAAGGCAC-GAAAAA
1 TTTTTGAA-ACACGGAAAAA
8194846 -TTTTGAAA
1 TTTTTGAAA
8194854 AATAGAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
18 7 0.29
19 6 0.25
20 8 0.33
21 3 0.12
ACGTcount: A:0.45, C:0.09, G:0.17, T:0.30
Consensus pattern (19 bp):
TTTTTGAAACACGGAAAAA
Found at i:8195226 original size:8 final size:8
Alignment explanation
Indices: 8195213--8195295 Score: 91
Period size: 8 Copynumber: 10.4 Consensus size: 8
8195203 TTGAAACTCT
8195213 TTTTTTTC
1 TTTTTTTC
8195221 TTTTTTTC
1 TTTTTTTC
8195229 TTCTTTTTTCC
1 -T-TTTTTT-C
*
8195240 TTTTTTCC
1 TTTTTTTC
8195248 TTTTTTTC
1 TTTTTTTC
*
8195256 -TCTTTTC
1 TTTTTTTC
8195263 TTTTTTTC
1 TTTTTTTC
*
8195271 -TTCTTTC
1 TTTTTTTC
8195278 TTTTTTTC
1 TTTTTTTC
8195286 -TTTTTTC
1 TTTTTTTC
8195293 TTT
1 TTT
8195296 CTCTTTTTTT
Statistics
Matches: 63, Mismatches: 6, Indels: 12
0.78 0.07 0.15
Matches are distributed among these distances:
7 19 0.30
8 30 0.48
9 6 0.10
10 7 0.11
11 1 0.02
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (8 bp):
TTTTTTTC
Found at i:8195237 original size:19 final size:18
Alignment explanation
Indices: 8195212--8195304 Score: 98
Period size: 19 Copynumber: 4.9 Consensus size: 18
8195202 ATTGAAACTC
8195212 TTTTTTTTCTTTTTTTCT
1 TTTTTTTTCTTTTTTTCT
* *
8195230 TCTTTTTTCCTTTTTTCCT
1 T-TTTTTTTCTTTTTTTCT
*
8195249 TTTTTTCTCTTTTCTTT-T
1 TTTTTTTTCTTTT-TTTCT
8195267 TTTCTTCTTTCTTTTTTTCT
1 TTT-TT-TTTCTTTTTTTCT
8195287 TTTTTCTTTCTCTTTTTT
1 TTTTT-TTTCT-TTTTTT
8195305 TCCTGGCCTA
Statistics
Matches: 63, Mismatches: 6, Indels: 10
0.80 0.08 0.13
Matches are distributed among these distances:
18 15 0.24
19 31 0.49
20 17 0.27
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (18 bp):
TTTTTTTTCTTTTTTTCT
Found at i:8195265 original size:15 final size:15
Alignment explanation
Indices: 8195210--8195295 Score: 104
Period size: 15 Copynumber: 5.8 Consensus size: 15
8195200 GAATTGAAAC
*
8195210 TCTTTTTT-TTCTTT
1 TCTTTTTTCTTTTTT
*
8195224 T-TTTCTTCTTTTTT
1 TCTTTTTTCTTTTTT
*
8195238 CCTTTTTTCCTTTTTT
1 TCTTTTTT-CTTTTTT
*
8195254 TCTCTTTTCTTTTTT
1 TCTTTTTTCTTTTTT
*
8195269 TCTTCTTTCTTTTTT
1 TCTTTTTTCTTTTTT
8195284 TCTTTTTTCTTT
1 TCTTTTTTCTTT
8195296 CTCTTTTTTT
Statistics
Matches: 60, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
13 5 0.08
14 6 0.10
15 36 0.60
16 13 0.22
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (15 bp):
TCTTTTTTCTTTTTT
Found at i:8195267 original size:42 final size:36
Alignment explanation
Indices: 8195215--8195306 Score: 112
Period size: 42 Copynumber: 2.4 Consensus size: 36
8195205 GAAACTCTTT
8195215 TTTTTCTTTTTTTCTTCTTTTTTCCTTTTTTCCTTTTTTTC
1 TTTTTCTTTTTTTCTTC---TTT-CTTTTTTCC-TTTTTTC
*
8195256 TCTTTTCTTTTTTTCTTCTTTCTTTTTTTCTTTTTTC
1 T-TTTTCTTTTTTTCTTCTTTCTTTTTTCCTTTTTTC
*
8195293 TTTCTCTTTTTTTC
1 TTTTTCTTTTTTTC
8195307 CTGGCCTACT
Statistics
Matches: 48, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
36 12 0.25
37 8 0.17
38 8 0.17
39 3 0.06
41 1 0.02
42 16 0.33
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (36 bp):
TTTTTCTTTTTTTCTTCTTTCTTTTTTCCTTTTTTC
Found at i:8195410 original size:15 final size:14
Alignment explanation
Indices: 8195390--8195443 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 14
8195380 GGCCTGCTTC
*
8195390 TTTTTTCTGGGCTG
1 TTTTTTTTGGGCTG
8195404 TTTTTTTTTGGGCCT-
1 -TTTTTTTTGGG-CTG
8195419 TTTCTTTTTGGGCTG
1 TTT-TTTTTGGGCTG
8195434 CTTTTTTTTG
1 -TTTTTTTTG
8195444 CTTTGGTTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
14 5 0.15
15 24 0.71
16 5 0.15
ACGTcount: A:0.00, C:0.13, G:0.22, T:0.65
Consensus pattern (14 bp):
TTTTTTTTGGGCTG
Found at i:8195440 original size:32 final size:29
Alignment explanation
Indices: 8195392--8195477 Score: 75
Period size: 32 Copynumber: 2.7 Consensus size: 29
8195382 CCTGCTTCTT
8195392 TTTTCTGGGCTG-TTTTTTTTTGGGCCTTTTC
1 TTTT-TGGGCTGTTTTTTTTTTGGG--TTTTC
* *
8195423 TTTTTGGGCTGCTTTTTTTTGCTTTGGTTTTT
1 TTTTTGGGCTG-TTTTTTTT--TTGGGTTTTC
8195455 TTTTTGGGCTGATTTGTTTTTTT
1 TTTTTGGGCTG-TTT-TTTTTTT
8195478 TTGTGTTGTT
Statistics
Matches: 47, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
30 7 0.15
31 6 0.13
32 25 0.53
33 5 0.11
34 4 0.09
ACGTcount: A:0.01, C:0.10, G:0.22, T:0.66
Consensus pattern (29 bp):
TTTTTGGGCTGTTTTTTTTTTGGGTTTTC
Found at i:8195490 original size:32 final size:32
Alignment explanation
Indices: 8195423--8195491 Score: 79
Period size: 32 Copynumber: 2.2 Consensus size: 32
8195413 GGGCCTTTTC
* *
8195423 TTTTTGGGCTGCTTTTTTTTGCTTTGGTTTTT
1 TTTTTGGGCTGATTTTTTTTGCTTTGGTTTGT
*
8195455 TTTTTGGGCTGATTTGTTTTT--TTTTGTGTTGT
1 TTTTTGGGCTGATTT-TTTTTGCTTTGGT-TTGT
8195487 TTTTT
1 TTTTT
8195492 TTAATTAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
31 5 0.16
32 22 0.69
33 5 0.16
ACGTcount: A:0.01, C:0.06, G:0.22, T:0.71
Consensus pattern (32 bp):
TTTTTGGGCTGATTTTTTTTGCTTTGGTTTGT
Found at i:8195613 original size:3 final size:3
Alignment explanation
Indices: 8195607--8195647 Score: 64
Period size: 3 Copynumber: 13.3 Consensus size: 3
8195597 TTTTTTTTCT
*
8195607 TTC TTC TTC TTTC TTC TTC TTC TTC TTT TTC TTC TTC TTC T
1 TTC TTC TTC -TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
8195648 CCTCCTACAC
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
3 32 0.91
4 3 0.09
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (3 bp):
TTC
Found at i:8195759 original size:8 final size:10
Alignment explanation
Indices: 8195713--8195762 Score: 50
Period size: 10 Copynumber: 5.2 Consensus size: 10
8195703 ACGCCGGTAC
8195713 TCTT-TCTTT
1 TCTTCTCTTT
* *
8195722 TCTTCTCCTC
1 TCTTCTCTTT
*
8195732 T-TTATCTTT
1 TCTTCTCTTT
8195741 TCTTCTCTTT
1 TCTTCTCTTT
*
8195751 TCTTCTTTTT
1 TCTTCTCTTT
8195761 TC
1 TC
8195763 CTTCGAAAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
9 10 0.31
10 22 0.69
ACGTcount: A:0.02, C:0.28, G:0.00, T:0.70
Consensus pattern (10 bp):
TCTTCTCTTT
Found at i:8196041 original size:29 final size:29
Alignment explanation
Indices: 8196008--8196124 Score: 94
Period size: 30 Copynumber: 3.9 Consensus size: 29
8195998 TGTAATTTTT
*
8196008 AGAAAATTTAGGATTAAAATGAAATTTAA
1 AGAAAATTTAGGGTTAAAATGAAATTTAA
* * *
8196037 TGAAAGTTTAGGGGTCT-AAGTGAAATTTAA
1 AGAAAATTTA-GGGT-TAAAATGAAATTTAA
* *
8196067 AGAAAGTTTAAGGGTCAAAATGAAATTT-A
1 AGAAAATTT-AGGGTTAAAATGAAATTTAA
* * *
8196096 GGAAAAGTTTAGGGGTCAAAATGCAATTT
1 AGAAAA-TTTA-GGGTTAAAATGAAATTT
8196125 TTATTTTTTA
Statistics
Matches: 72, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
29 14 0.19
30 56 0.78
31 2 0.03
ACGTcount: A:0.44, C:0.03, G:0.22, T:0.30
Consensus pattern (29 bp):
AGAAAATTTAGGGTTAAAATGAAATTTAA
Found at i:8196063 original size:30 final size:30
Alignment explanation
Indices: 8196023--8196124 Score: 134
Period size: 30 Copynumber: 3.4 Consensus size: 30
8196013 ATTTAGGATT
*
8196023 AAAATGAAATTTAATGAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
* * *
8196053 TAAGTGAAATTTAAAGAAAGTTTAAGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
*
8196083 AAAATGAAATTT-AGGAAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAG-AAAGTTTAGGGGTC
*
8196113 AAAATGCAATTT
1 AAAATGAAATTT
8196125 TTATTTTTTA
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
29 2 0.03
30 60 0.97
ACGTcount: A:0.44, C:0.04, G:0.23, T:0.29
Consensus pattern (30 bp):
AAAATGAAATTTAAAGAAAGTTTAGGGGTC
Found at i:8196581 original size:54 final size:55
Alignment explanation
Indices: 8196395--8196612 Score: 324
Period size: 54 Copynumber: 4.1 Consensus size: 55
8196385 CACGTGAGCC
* *
8196395 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG-AAAACAGAATTTGCAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTG-AA
*
8196450 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAG--A---AA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTGAA
* *
8196501 AAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGAAAAATAGAAATT-AA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAA
8196555 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAA
8196610 AAG
1 AAG
8196613 TAGAAATTGA
Statistics
Matches: 150, Mismatches: 6, Indels: 14
0.88 0.04 0.08
Matches are distributed among these distances:
50 14 0.09
51 34 0.23
52 1 0.01
54 52 0.35
55 37 0.25
56 6 0.04
57 6 0.04
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (55 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAA
Found at i:8196610 original size:14 final size:14
Alignment explanation
Indices: 8196591--8196625 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
8196581 GAGTTGATTT
8196591 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
**
8196605 TTGAAAAGTAGAAA
1 TTGAAAAACAGAAA
8196619 TTGAAAA
1 TTGAAAA
8196626 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.60, C:0.03, G:0.17, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:8196858 original size:85 final size:87
Alignment explanation
Indices: 8196714--8196961 Score: 299
Period size: 85 Copynumber: 2.8 Consensus size: 87
8196704 AACAGAAATT
* * * *
8196714 AAAAACATAATTTGAAAAGACCTCAGCGTGTGGCCTGAGACTCAACTCACCTCTTGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGC-TGTGGCCTGAGGCTCAACTCACCTCTTGCAATATGAG
*
8196779 TTGATTTGAAAAG-TAGAATT-AG
65 TTGATTTGAAAAGATAG-ATTGAA
* * * *
8196801 TAAAGCAGAAATTGAAAATACCTCAGC-GT-GCCTTGAGGCTCAACTCACCTCTCGCAATATAAG
1 AAAAACAGAAATTGAAAATACCTCAGCTGTGGCC-TGAGGCTCAACTCACCTCTTGCAATATGAG
8196864 TTGATTTTTGAAAAGCATAGATTGAA
65 TTGA--TTTGAAAAG-ATAGATTGAA
*
8196890 AAAAACATAAATTGAAAATACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTTGCAATATGA
1 AAAAACAGAAATTGAAAATACCTCAGC-TGTG-GCCTGAGGCTCAACTCACCTCTTGCAATATGA
8196954 GTTGATTT
64 GTTGATTT
8196962 TTGAAAAACA
Statistics
Matches: 137, Mismatches: 14, Indels: 18
0.81 0.08 0.11
Matches are distributed among these distances:
84 3 0.02
85 33 0.24
87 31 0.23
88 3 0.02
89 31 0.23
91 33 0.24
93 3 0.02
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (87 bp):
AAAAACAGAAATTGAAAATACCTCAGCTGTGGCCTGAGGCTCAACTCACCTCTTGCAATATGAGT
TGATTTGAAAAGATAGATTGAA
Found at i:8196907 original size:15 final size:16
Alignment explanation
Indices: 8196874--8196907 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8196864 TTGATTTTTG
* *
8196874 AAAAGCATAGATTGAA
1 AAAAACATAAATTGAA
8196890 AAAAACATAAATTGAA
1 AAAAACATAAATTGAA
8196906 AA
1 AA
8196908 TACCTCAGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.65, C:0.06, G:0.12, T:0.18
Consensus pattern (16 bp):
AAAAACATAAATTGAA
Found at i:8196949 original size:91 final size:88
Alignment explanation
Indices: 8196714--8196968 Score: 324
Period size: 91 Copynumber: 2.9 Consensus size: 88
8196704 AACAGAAATT
* * *
8196714 AAAAACATAATTTGAAAAGACCTCAGCGTGTGGCCTGAGACTCAACTCACCTCTTGCAATATGAG
1 AAAAACATAAATTGAAAATACCTCAGC-TGTGGCCTGAGGCTCAACTCACCTCTTGCAATATGAG
*
8196779 TTGA--TTTGAAAAGTAGAATTAG
65 TTGATTTTTGAAAAGTAGAATTAA
* * * * *
8196801 TAAAGCAGAAATTGAAAATACCTCAGC-GT-GCCTTGAGGCTCAACTCACCTCTCGCAATATAAG
1 AAAAACATAAATTGAAAATACCTCAGCTGTGGCC-TGAGGCTCAACTCACCTCTTGCAATATGAG
8196864 TTGATTTTTGAAAAGCATAG-ATTGAA
65 TTGATTTTTGAAAAG--TAGAATT-AA
8196890 AAAAACATAAATTGAAAATACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTTGCAATATGA
1 AAAAACATAAATTGAAAATACCTCAGC-TGTG-GCCTGAGGCTCAACTCACCTCTTGCAATATGA
8196954 GTTGATTTTTGAAAA
64 GTTGATTTTTGAAAA
8196969 ACAAAAATTA
Statistics
Matches: 144, Mismatches: 14, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
84 3 0.02
85 33 0.23
87 31 0.22
88 3 0.02
89 28 0.19
91 43 0.30
93 3 0.02
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (88 bp):
AAAAACATAAATTGAAAATACCTCAGCTGTGGCCTGAGGCTCAACTCACCTCTTGCAATATGAGT
TGATTTTTGAAAAGTAGAATTAA
Found at i:8197267 original size:191 final size:192
Alignment explanation
Indices: 8196926--8198300 Score: 2613
Period size: 191 Copynumber: 7.2 Consensus size: 192
8196916 CATGTGAGCC
** *
8196926 GAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAAAGGCTTAACT
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTGAAAAACAAAAATTAAAAGGCTTAACT
8196991 CACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGG-TC
65 CACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTC
* *
8197055 AACTCATTTCTCGCAATATGAGTTGATTTTTTTTAAAAATTTAAAAATACCTCAACGT-TCTT
130 AACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
8197117 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
8197182 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
66 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
8197247 ACTCACTTCTCGCAATATGAGTTGA-TTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
131 ACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
8197308 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
8197373 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
66 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
8197438 ACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
131 ACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
8197500 GAGGCTCAACTCATTTCTCGCAATATGA-TTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
8197564 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTG-CCCGAGGCTCA
66 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
8197628 ACTCACTTCTCGCAATATGAGTTGA-TTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
131 ACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
8197689 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
8197754 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
66 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
8197819 ACTCACTTCTCGCAATATGAGTTGA-TTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
131 ACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
*
8197880 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAATAAAAATTAAAAGGC-TATACT
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTA-ACT
8197944 CACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTC
65 CACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTC
*
8198009 AACTCACTTCTCGCAATATGAGTTGATTTTTTAAAAAAATTTAAAAATACCTCAACGTGTCTT
130 AACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
8198072 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
8198137 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
66 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
8198202 ACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
131 ACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
8198264 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
8198301 CCTTGGAAAG
Statistics
Matches: 1167, Mismatches: 9, Indels: 15
0.98 0.01 0.01
Matches are distributed among these distances:
189 64 0.05
190 250 0.21
191 528 0.45
192 323 0.28
193 2 0.00
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.30
Consensus pattern (192 bp):
GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
ACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
Found at i:8197366 original size:122 final size:122
Alignment explanation
Indices: 8197240--8197466 Score: 305
Period size: 122 Copynumber: 1.9 Consensus size: 122
8197230 GCGTGCCCCG
* * * * **
8197240 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTAAA-A-AATTTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAG-TCA-ATTTAAAACATAAACTAAAAATACCTCAACGT
* ** *
8197303 GTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
64 GCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
* **
8197362 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAACGTGC
8197427 CCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT
66 CCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT
8197467 TTTAAAAAAT
Statistics
Matches: 90, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
120 6 0.07
121 3 0.03
122 81 0.90
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.30
Consensus pattern (122 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAACGTGC
CCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
Found at i:8197631 original size:572 final size:575
Alignment explanation
Indices: 8196926--8198300 Score: 2627
Period size: 572 Copynumber: 2.4 Consensus size: 575
8196916 CATGTGAGCC
** *
8196926 GAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAAAGGCTTAACT
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTGAAAAACAAAAATTAAAAGGCTTAACT
8196991 CACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGG-TC
65 CACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTC
* *
8197055 AACTCATTTCTCGCAATATGAGTTGATTTTTTTTAAAAATTTAAAAATACCTCAACGT-TCTTGA
130 AACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTTGA
8197119 GGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCAC
195 GGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCAC
8197184 CTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAAC
260 CTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAAC
8197249 TCACTTCTCGCAATATGAGTTGATTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTTGAGGCT
325 TCACTTCTCGCAATATGAGTTGATTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTTGAGGCT
8197314 CAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCT-TAACTCACCTC
390 CAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTAT-ACTCACCTC
8197378 TCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAACTCA
454 TCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAACTCA
*
8197443 CTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
519 CTTCTCGCAATATGAGTTGATTTTTTAAAAAAATTTAAAAATACCTCAACGTGTCTT
8197500 GAGGCTCAACTCATTTCTCGCAATATGA-TTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
8197564 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTG-CCCGAGGCTCA
66 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
8197628 ACTCACTTCTCGCAATATGAGTTGA-TTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTTGAG
131 ACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTTGAG
8197692 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACC
196 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACC
8197757 TCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAACT
261 TCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAACT
8197822 CACTTCTCGCAATATGAGTTGATTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTTGAGGCTC
326 CACTTCTCGCAATATGAGTTGATTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTTGAGGCTC
*
8197887 AACTCATTTCTCGCAATATGAGTTGATTTTGAAAAATAAAAATTAAAAGGCTATACTCACCTCTC
391 AACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTATACTCACCTCTC
8197952 GCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAACTCACT
456 GCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAACTCACT
8198017 TCTCGCAATATGAGTTGATTTTTTAAAAAAATTTAAAAATACCTCAACGTGTCTT
521 TCTCGCAATATGAGTTGATTTTTTAAAAAAATTTAAAAATACCTCAACGTGTCTT
8198072 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
8198137 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
66 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
8198202 ACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTTGAG
131 ACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTTGAG
8198267 GCTCAACTCATTTCTCGCAATATGAGTTGATTTT
196 GCTCAACTCATTTCTCGCAATATGAGTTGATTTT
8198301 CCTTGGAAAG
Statistics
Matches: 788, Mismatches: 7, Indels: 11
0.98 0.01 0.01
Matches are distributed among these distances:
571 37 0.05
572 523 0.66
573 94 0.12
574 61 0.08
575 73 0.09
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.30
Consensus pattern (575 bp):
GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
ACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTTGAG
GCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACC
TCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAACT
CACTTCTCGCAATATGAGTTGATTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTTGAGGCTC
AACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTATACTCACCTCTC
GCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAACTCACT
TCTCGCAATATGAGTTGATTTTTTAAAAAAATTTAAAAATACCTCAACGTGTCTT
Found at i:8197663 original size:381 final size:383
Alignment explanation
Indices: 8196926--8198300 Score: 2627
Period size: 381 Copynumber: 3.6 Consensus size: 383
8196916 CATGTGAGCC
** *
8196926 GAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAAAGGCTTAACT
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTGAAAAACAAAAATTAAAAGGCTTAACT
8196991 CACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGG-TC
65 CACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTC
* *
8197055 AACTCATTTCTCGCAATATGAGTTGATTTTTTTTAAAAATTTAAAAATACCTCAACGT-TCTTGA
130 AACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTTGA
8197119 GGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCAC
195 GGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCAC
8197184 CTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAAC
260 CTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAAC
8197249 TCACTTCTCGCAATATGAGTTGATTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
325 TCACTTCTCGCAATATGAGTTGATTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
8197308 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
8197373 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
66 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
8197438 ACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTTGAG
131 ACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTTGAG
8197503 GCTCAACTCATTTCTCGCAATATGA-TTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACC
196 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACC
8197567 TCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTG-CCCGAGGCTCAACT
261 TCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAACT
8197631 CACTTCTCGCAATATGAGTTGATTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
326 CACTTCTCGCAATATGAGTTGATTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
8197689 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
8197754 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
66 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
8197819 ACTCACTTCTCGCAATATGAGTTGA-TTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTTGAG
131 ACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTTGAG
*
8197883 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAATAAAAATTAAAAGGC-TATACTCAC
196 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTA-ACTCAC
8197947 CTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAAC
260 CTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAAC
8198012 TCACTTCTCGCAATATGAGTTGATTTTTTAAAAAAATTTAAAAATACCTCAACGTGTCTT
325 TCACTTCTCGCAATATGAGTTGATTTTTT-AAAAAATTTAAAAATACCTCAACGTGTCTT
8198072 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
1 GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
8198137 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
66 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
8198202 ACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTTGAG
131 ACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTTGAG
8198267 GCTCAACTCATTTCTCGCAATATGAGTTGATTTT
196 GCTCAACTCATTTCTCGCAATATGAGTTGATTTT
8198301 CCTTGGAAAG
Statistics
Matches: 980, Mismatches: 6, Indels: 12
0.98 0.01 0.01
Matches are distributed among these distances:
380 66 0.07
381 405 0.41
382 219 0.22
383 217 0.22
384 73 0.07
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.30
Consensus pattern (383 bp):
GAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTC
ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
ACTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTTGAG
GCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACC
TCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAACT
CACTTCTCGCAATATGAGTTGATTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTT
Found at i:8197753 original size:122 final size:122
Alignment explanation
Indices: 8197621--8197847 Score: 305
Period size: 122 Copynumber: 1.9 Consensus size: 122
8197611 GGCGTGCCCG
* * * * **
8197621 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTAAA-A-AATTTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAG-TCA-ATTTAAAACATAAACTAAAAATACCTCAACGT
* ** *
8197684 GTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
64 GCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
* **
8197743 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAACGTGC
8197808 CCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT
66 CCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT
8197848 TTAAAAAATT
Statistics
Matches: 90, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
120 6 0.07
121 3 0.03
122 81 0.90
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.30
Consensus pattern (122 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAACGTGC
CCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
Found at i:8198023 original size:69 final size:68
Alignment explanation
Indices: 8197941--8198101 Score: 180
Period size: 70 Copynumber: 2.3 Consensus size: 68
8197931 AAAAGGCTAT
* **
8197941 ACTCACCTCTCGCAATATGAGTCA-ATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAG
1 ACTCACTTCTCGCAATATGAGTCATATTTAAAA-A-AAACTAAAAATACCTCAACGTGCCCCGAG
8198005 GCTCA
64 GCTCA
* * ** * **
8198010 ACTCACTTCTCGCAATATGAGTTGATTTTTTAAAAAAATTTAAAAATACCTCAACGTGTCTTGAG
1 ACTCACTTCTCGCAATATGAG-TCA-TATTTAAAAAAAACTAAAAATACCTCAACGTGCCCCGAG
8198075 GCTCA
64 GCTCA
*
8198080 ACTCATTTCTCGCAATATGAGT
1 ACTCACTTCTCGCAATATGAGT
8198102 TGATTTTGAA
Statistics
Matches: 78, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
69 21 0.27
70 49 0.63
71 1 0.01
72 7 0.09
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.29
Consensus pattern (68 bp):
ACTCACTTCTCGCAATATGAGTCATATTTAAAAAAAACTAAAAATACCTCAACGTGCCCCGAGGC
TCA
Found at i:8210009 original size:17 final size:17
Alignment explanation
Indices: 8209983--8210126 Score: 130
Period size: 17 Copynumber: 8.4 Consensus size: 17
8209973 CGAGATTTTT
8209983 TTTTTGAAAACACGAAAA
1 TTTTT-AAAACACGAAAA
*
8210001 TTTTCAAAACACCG-AAA
1 TTTTTAAAACA-CGAAAA
* **
8210018 TTTTTGAAAACAAGAGGA
1 TTTTT-AAAACACGAAAA
* *
8210036 TTTTTGAAATACGAAAAA
1 TTTTTAAAACACG-AAAA
*
8210054 TTTTGAAAACACGAAAA
1 TTTTTAAAACACGAAAA
* *
8210071 TTTTTGAAACACGGAAA
1 TTTTTAAAACACGAAAA
*
8210088 TTTTTGAAA-ACGAAAA
1 TTTTTAAAACACGAAAA
* *
8210104 TTTTTGAAACACAAAAA
1 TTTTTAAAACACGAAAA
8210121 TTTTTA
1 TTTTTA
8210127 GAAGACACTA
Statistics
Matches: 102, Mismatches: 19, Indels: 11
0.77 0.14 0.08
Matches are distributed among these distances:
16 15 0.15
17 57 0.56
18 30 0.29
ACGTcount: A:0.47, C:0.10, G:0.12, T:0.31
Consensus pattern (17 bp):
TTTTTAAAACACGAAAA
Found at i:8210011 original size:39 final size:38
Alignment explanation
Indices: 8209894--8210022 Score: 115
Period size: 36 Copynumber: 3.4 Consensus size: 38
8209884 GATCCGATTG
* *
8209894 AAACACGAGAATTTCTTGTTTTGAAAACACGAGAATTTTA
1 AAACACGAG-ATTT-TTTTTTTGAAAACACGAAAATTTTA
* * * *
8209934 AGACA-TA-ATATTTTTTTT-AAAAC-C-AAAATTTATG
1 AAACACGAGATTTTTTTTTTGAAAACACGAAAATTT-TA
8209968 AAACACGAGATTTTTTTTTTGAAAACACGAAAATTTTCA
1 AAACACGAGATTTTTTTTTTGAAAACACGAAAATTTT-A
*
8210007 AAACACCGAAATTTTT
1 AAACA-CGAGATTTTT
8210023 GAAAACAAGA
Statistics
Matches: 70, Mismatches: 11, Indels: 16
0.72 0.11 0.16
Matches are distributed among these distances:
33 6 0.09
34 6 0.09
35 6 0.09
36 16 0.23
37 8 0.11
38 2 0.03
39 13 0.19
40 13 0.19
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.36
Consensus pattern (38 bp):
AAACACGAGATTTTTTTTTTGAAAACACGAAAATTTTA
Found at i:8210029 original size:35 final size:35
Alignment explanation
Indices: 8209983--8210145 Score: 170
Period size: 35 Copynumber: 4.7 Consensus size: 35
8209973 CGAGATTTTT
**
8209983 TTTTTGAAAACACGAAAATTTTCAAAACACCGAAA
1 TTTTTGAAAACACGAAAATTTTTGAAACACCGAAA
* ** *
8210018 TTTTTGAAAACAAGAGGATTTTTGAAATA-CGAAAA
1 TTTTTGAAAACACGAAAATTTTTGAAACACCG-AAA
* *
8210053 ATTTTGAAAACACGAAAATTTTTGAAACACGGAAA
1 TTTTTGAAAACACGAAAATTTTTGAAACACCGAAA
**
8210088 TTTTTG-AAA-ACGAAAATTTTTGAAACACAAAAA
1 TTTTTGAAAACACGAAAATTTTTGAAACACCGAAA
* * *
8210121 TTTTTAGAAGACACTAAAAATTTTG
1 TTTTT-GAAAACACGAAAATTTTTG
8210146 GAAAATGGAT
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
33 27 0.26
34 6 0.06
35 60 0.57
36 12 0.11
ACGTcount: A:0.47, C:0.10, G:0.12, T:0.30
Consensus pattern (35 bp):
TTTTTGAAAACACGAAAATTTTTGAAACACCGAAA
Found at i:8210359 original size:20 final size:19
Alignment explanation
Indices: 8210321--8210367 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
8210311 GAATATATTT
8210321 TTTTTGAAACACGAGAAAAA
1 TTTTTGAAACACG-GAAAAA
*
8210341 TTTTTGAAGGCAC-GAAAAA
1 TTTTTGAA-ACACGGAAAAA
8210360 -TTTTGAAA
1 TTTTTGAAA
8210368 AATAGAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
18 7 0.29
19 6 0.25
20 8 0.33
21 3 0.12
ACGTcount: A:0.45, C:0.09, G:0.17, T:0.30
Consensus pattern (19 bp):
TTTTTGAAACACGGAAAAA
Found at i:8210740 original size:8 final size:8
Alignment explanation
Indices: 8210727--8210808 Score: 87
Period size: 8 Copynumber: 10.2 Consensus size: 8
8210717 GAATTGAAAC
8210727 TCTTTTTT
1 TCTTTTTT
8210735 TCTTTTTTTT
1 TC--TTTTTT
8210745 TCTTTTTT
1 TCTTTTTT
*
8210753 CCTTTTTT
1 TCTTTTTT
*
8210761 CCTTTTTT
1 TCTTTTTT
*
8210769 TC-TCTTT
1 TCTTTTTT
8210776 TCTTTTTT
1 TCTTTTTT
8210784 TC-TTTTT
1 TCTTTTTT
* *
8210791 TCTTTCTC
1 TCTTTTTT
8210799 TCTTTTTT
1 TCTTTTTT
8210807 TC
1 TC
8210809 CTGGCCTGCT
Statistics
Matches: 62, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
7 13 0.21
8 41 0.66
10 8 0.13
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (8 bp):
TCTTTTTT
Found at i:8210758 original size:15 final size:15
Alignment explanation
Indices: 8210740--8210806 Score: 89
Period size: 15 Copynumber: 4.4 Consensus size: 15
8210730 TTTTTTCTTT
*
8210740 TTTTTTCTTTTTTCC
1 TTTTTTCTTTTTTTC
8210755 TTTTTTCCTTTTTTTC
1 TTTTTT-CTTTTTTTC
*
8210771 TCTTTTCTTTTTTTC
1 TTTTTTCTTTTTTTC
* *
8210786 TTTTTTCTTTCTCTC
1 TTTTTTCTTTTTTTC
8210801 TTTTTT
1 TTTTTT
8210807 TCCTGGCCTG
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
15 33 0.72
16 13 0.28
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (15 bp):
TTTTTTCTTTTTTTC
Found at i:8210930 original size:19 final size:17
Alignment explanation
Indices: 8210892--8210949 Score: 64
Period size: 19 Copynumber: 3.4 Consensus size: 17
8210882 GGCCTGCTTC
* *
8210892 TTTTTTCTGGGCTG-TT
1 TTTTTTTTGGGTTGTTT
8210908 TTTTTTTTGGGTTGATTT
1 TTTTTTTTGGGTTG-TTT
*
8210926 GTTTTTTTTGTGTTGTTT
1 -TTTTTTTTGGGTTGTTT
8210944 TTTTTT
1 TTTTTT
8210950 AATTAATTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
16 12 0.33
17 6 0.17
18 5 0.14
19 13 0.36
ACGTcount: A:0.02, C:0.03, G:0.21, T:0.74
Consensus pattern (17 bp):
TTTTTTTTGGGTTGTTT
Found at i:8211081 original size:3 final size:3
Alignment explanation
Indices: 8211075--8211106 Score: 55
Period size: 3 Copynumber: 10.3 Consensus size: 3
8211065 TTTTTTTTCT
8211075 TTC TTC TTC TTTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC -TTC TTC TTC TTC TTC TTC TTC T
8211107 CCTCCTCCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:8211171 original size:10 final size:10
Alignment explanation
Indices: 8211136--8211185 Score: 59
Period size: 10 Copynumber: 5.2 Consensus size: 10
8211126 ACGCCGGTAC
8211136 TCTT-TCTTT
1 TCTTCTCTTT
* *
8211145 TCTTCTCCTC
1 TCTTCTCTTT
8211155 T-TTCTCTTT
1 TCTTCTCTTT
8211164 TCTTCTCTTT
1 TCTTCTCTTT
*
8211174 TCTTCTTTTT
1 TCTTCTCTTT
8211184 TC
1 TC
8211186 CTTCGAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
9 11 0.32
10 23 0.68
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (10 bp):
TCTTCTCTTT
Found at i:8211183 original size:19 final size:19
Alignment explanation
Indices: 8211140--8211182 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
8211130 CGGTACTCTT
8211140 TCTTTTCTTCTCCTCTTTC
1 TCTTTTCTTCTCCTCTTTC
8211159 TCTTTTCTTCT-CT-TTTC
1 TCTTTTCTTCTCCTCTTTC
8211176 TTCTTTT
1 -TCTTTT
8211183 TTCCTTCGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 4 0.17
18 8 0.35
19 11 0.48
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (19 bp):
TCTTTTCTTCTCCTCTTTC
Found at i:8211490 original size:30 final size:28
Alignment explanation
Indices: 8211452--8211539 Score: 106
Period size: 30 Copynumber: 3.1 Consensus size: 28
8211442 TTAGGATTAA
*
8211452 AATGAAATTTAATGAAAGTTTAGGGGTC
1 AATGAAATTTAAAGAAAGTTTAGGGGTC
*
8211480 TAAGTGAAATTTAAAGAAAGTTTAAGGGTC
1 -AA-TGAAATTTAAAGAAAGTTTAGGGGTC
* *
8211510 AATGAAATTT-AGGCAAAGTTTAGTGGTC
1 AATGAAATTTAAAG-AAAGTTTAGGGGTC
8211538 AA
1 AA
8211540 AATGCAATTT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
27 2 0.04
28 22 0.42
29 4 0.08
30 24 0.46
ACGTcount: A:0.41, C:0.05, G:0.24, T:0.31
Consensus pattern (28 bp):
AATGAAATTTAAAGAAAGTTTAGGGGTC
Found at i:8215345 original size:18 final size:19
Alignment explanation
Indices: 8215322--8215357 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
8215312 CCCAATAATA
8215322 TCTTCTGCTTTTT-TTTTT
1 TCTTCTGCTTTTTGTTTTT
*
8215340 TCTTCTTCTTTTTGTTTT
1 TCTTCTGCTTTTTGTTTT
8215358 GCTCTTTCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.00, C:0.17, G:0.06, T:0.78
Consensus pattern (19 bp):
TCTTCTGCTTTTTGTTTTT
Found at i:8223504 original size:69 final size:69
Alignment explanation
Indices: 8223412--8223549 Score: 222
Period size: 69 Copynumber: 2.0 Consensus size: 69
8223402 AATAACATTT
*
8223412 TAAGTAATACTGCAAGAGATTATCAACAAAATTTAACTTATAATCATATGTATTAATTGTTATTA
1 TAAGCAATACTGCAAGAGATTATCAACAAAATTTAACTTATAATCATATGTATTAATTGTTATTA
8223477 CATA
66 CATA
* * * * *
8223481 TAAGCAATATTGCAAGAGATTATCAACAAAATTTAACTTATAATCATTTGTATTAGTTTTTGTTA
1 TAAGCAATACTGCAAGAGATTATCAACAAAATTTAACTTATAATCATATGTATTAATTGTTATTA
8223546 CATA
66 CATA
8223550 ATATAGTTTG
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
69 63 1.00
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.39
Consensus pattern (69 bp):
TAAGCAATACTGCAAGAGATTATCAACAAAATTTAACTTATAATCATATGTATTAATTGTTATTA
CATA
Found at i:8228060 original size:44 final size:44
Alignment explanation
Indices: 8227997--8228084 Score: 151
Period size: 44 Copynumber: 2.0 Consensus size: 44
8227987 CATCAAGACT
8227997 GAAGATCTCCCTTCAAATTCCCTCAAG-AGTTTTGGGTTTTCTTA
1 GAAGATCTCCCTTCAAATTCCCT-AAGAAGTTTTGGGTTTTCTTA
*
8228041 GAAGATCTCCCTTCAAATTCCCTTAGAAGTTTTGGGTTTTCTTA
1 GAAGATCTCCCTTCAAATTCCCTAAGAAGTTTTGGGTTTTCTTA
8228085 TGTTTTGTTA
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
43 2 0.05
44 40 0.95
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.40
Consensus pattern (44 bp):
GAAGATCTCCCTTCAAATTCCCTAAGAAGTTTTGGGTTTTCTTA
Found at i:8229299 original size:20 final size:20
Alignment explanation
Indices: 8229274--8229313 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
8229264 CTCGTAGCTG
*
8229274 ATGCATGTCTCAGACATGTC
1 ATGCATGTCCCAGACATGTC
*
8229294 ATGCATGTCCCAGACCTGTC
1 ATGCATGTCCCAGACATGTC
8229314 TTACACTAGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (20 bp):
ATGCATGTCCCAGACATGTC
Found at i:8231804 original size:21 final size:22
Alignment explanation
Indices: 8231774--8231816 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
8231764 ATATTTAAAA
*
8231774 AAAAAGGAAAATTATATATATT
1 AAAAAGGAAAAGTATATATATT
8231796 AAAAA-GAAAAGTATATATATT
1 AAAAAGGAAAAGTATATATATT
8231817 TTTTTAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.60, C:0.00, G:0.09, T:0.30
Consensus pattern (22 bp):
AAAAAGGAAAAGTATATATATT
Found at i:8233470 original size:104 final size:105
Alignment explanation
Indices: 8233272--8233533 Score: 305
Period size: 104 Copynumber: 2.4 Consensus size: 105
8233262 TTTTTAACTT
* * *
8233272 TAAATCCAATCAAAATTAAATATGACAAATTTAAAAGAAAAGCAGTTGTAAATGCACCTTTCAAT
1 TAAATCCAATCGAAATTAAATATG----ATTTAAAAGAAAAGCAATTGTAAATGCACCTTTCAAC
* * **
8233337 AACTACCATGAAGTTTCTTTTAAATTGTTAAGGGTACTTCACTC
62 AACTACCATGAAGTTTATTTGAAATTGTTAAAAGTACTTCACTC
* * * *
8233381 TAAATCCAATCGAAATTAAATATGA-TTAAAGGAAAATCAATTGTAAATGTACCTTTCAACAGCT
1 TAAATCCAATCGAAATTAAATATGATTTAAAAGAAAAGCAATTGTAAATGCACCTTTCAACAACT
*
8233445 ACCATGAAGTTTATTTGAAGA-TGTTAAAAGTACTTCATTC
66 ACCATGAAGTTTATTTGAA-ATTGTTAAAAGTACTTCACTC
*
8233485 TAAAT-CAATCGAAATTAAATATGACGTATTTAAAAGAAAATCAATTGTA
1 TAAATCCAATCGAAATTAAATAT---G-ATTTAAAAGAAAAGCAATTGTA
8233534 TAGTAAATGT
Statistics
Matches: 134, Mismatches: 13, Indels: 13
0.84 0.08 0.08
Matches are distributed among these distances:
103 17 0.13
104 71 0.53
105 2 0.01
106 1 0.01
107 1 0.01
108 19 0.14
109 23 0.17
ACGTcount: A:0.43, C:0.13, G:0.11, T:0.32
Consensus pattern (105 bp):
TAAATCCAATCGAAATTAAATATGATTTAAAAGAAAAGCAATTGTAAATGCACCTTTCAACAACT
ACCATGAAGTTTATTTGAAATTGTTAAAAGTACTTCACTC
Found at i:8233875 original size:29 final size:29
Alignment explanation
Indices: 8233852--8233908 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
8233842 TATTATTGTT
*
8233852 ATTATTTTATTATATTAT-AAATTAAATTG
1 ATTATATTATTATATTATGAAATT-AATTG
*
8233881 ATTATATTATTATATTATGAAATAAATT
1 ATTATATTATTATATTATGAAATTAATT
8233909 AAGAAAAGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 21 0.84
30 4 0.16
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.53
Consensus pattern (29 bp):
ATTATATTATTATATTATGAAATTAATTG
Found at i:8234009 original size:33 final size:32
Alignment explanation
Indices: 8233967--8234038 Score: 103
Period size: 33 Copynumber: 2.2 Consensus size: 32
8233957 AAATGAGTAC
8233967 ATTTGTATTATTTA-TATATAATTAGTAAAGAGAT
1 ATTT-TATTATTTATTAT-TAATTAGTAAA-AGAT
8234001 ATTTTATTATTTATTATTAATTAGTAAAAGAT
1 ATTTTATTATTTATTATTAATTAGTAAAAGAT
8234033 -TTTTAT
1 ATTTTAT
8234039 ATGATAAATA
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
31 6 0.16
32 4 0.11
33 20 0.54
34 7 0.19
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (32 bp):
ATTTTATTATTTATTATTAATTAGTAAAAGAT
Found at i:8235253 original size:44 final size:44
Alignment explanation
Indices: 8235185--8235274 Score: 121
Period size: 44 Copynumber: 2.0 Consensus size: 44
8235175 TGTTCAGAGA
* *
8235185 TACTTCGACCTCGAGTCGATGAGGCA-CTATAG-GTGTCGTACTGT
1 TACTTCGACCTCAAGTCGACGAGGCACCT-T-GTGTGTCGTACTGT
*
8235229 TACTTCGACTTCAAGTCGACGAGGCACCTTGTGTGTCGTACTGT
1 TACTTCGACCTCAAGTCGACGAGGCACCTTGTGTGTCGTACTGT
8235273 TA
1 TA
8235275 TTATTACTTC
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
43 1 0.02
44 38 0.93
45 2 0.05
ACGTcount: A:0.20, C:0.23, G:0.26, T:0.31
Consensus pattern (44 bp):
TACTTCGACCTCAAGTCGACGAGGCACCTTGTGTGTCGTACTGT
Found at i:8235526 original size:18 final size:18
Alignment explanation
Indices: 8235432--8235527 Score: 65
Period size: 18 Copynumber: 5.4 Consensus size: 18
8235422 ACTACTGTAC
* *
8235432 TGAATAATTGATAGTTAT
1 TGAATAACTGATTGTTAT
* * *
8235450 TGAATAACTAAATTACTGTAC
1 TGAATAACT-GATT-GT-TAT
8235471 TGAATAACTGATTGTTAT
1 TGAATAACTGATTGTTAT
* * *
8235489 TG-AT---TGTTTGATAC
1 TGAATAACTGATTGTTAT
8235503 TGAATAACTGATTGTTAT
1 TGAATAACTGATTGTTAT
8235521 TGAATAA
1 TGAATAA
8235528 TAATAAGCAA
Statistics
Matches: 57, Mismatches: 14, Indels: 14
0.67 0.16 0.16
Matches are distributed among these distances:
14 9 0.16
15 2 0.04
17 2 0.04
18 26 0.46
19 3 0.05
20 4 0.07
21 11 0.19
ACGTcount: A:0.36, C:0.06, G:0.16, T:0.42
Consensus pattern (18 bp):
TGAATAACTGATTGTTAT
Found at i:8236854 original size:30 final size:30
Alignment explanation
Indices: 8236820--8236882 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
8236810 AATTAACAAG
8236820 CAAATGCCTCTAAAATAATAAC-AAAATTAA
1 CAAATGCCTCTAAAATAAT-ACTAAAATTAA
*
8236850 CAAATGCCTTTAAAATAATACTAAAATTAA
1 CAAATGCCTCTAAAATAATACTAAAATTAA
8236880 CAA
1 CAA
8236883 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 2 0.06
30 29 0.94
ACGTcount: A:0.56, C:0.16, G:0.03, T:0.25
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATACTAAAATTAA
Found at i:8241805 original size:31 final size:31
Alignment explanation
Indices: 8241770--8241844 Score: 105
Period size: 31 Copynumber: 2.4 Consensus size: 31
8241760 TTTAACGACC
* *
8241770 TAGTGACTTAAATAAAAACTTTTGAGTGGTT
1 TAGTGACTTAAATAAAAACTTTTGAATAGTT
**
8241801 TAGTGACTTAAATAAAATTTTTTGAATAGTT
1 TAGTGACTTAAATAAAAACTTTTGAATAGTT
*
8241832 TAATGACTTAAAT
1 TAGTGACTTAAAT
8241845 GAAACATTTC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.39, C:0.05, G:0.15, T:0.41
Consensus pattern (31 bp):
TAGTGACTTAAATAAAAACTTTTGAATAGTT
Found at i:8244572 original size:3 final size:3
Alignment explanation
Indices: 8244564--8244606 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
8244554 TAGTTTACTC
8244564 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
8244607 AAGCTTGATC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:8244959 original size:3 final size:3
Alignment explanation
Indices: 8244951--8244996 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
8244941 CGTATCCTTC
8244951 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
8244997 GTCATATTAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:8245302 original size:29 final size:29
Alignment explanation
Indices: 8245209--8245304 Score: 77
Period size: 30 Copynumber: 3.2 Consensus size: 29
8245199 CACATGCCCA
*
8245209 TGTTTTCATAGTTATATGTATCTCAT-CT
1 TGTTTTCATAGTTATATTTATCTCATGCT
* * * * * * *
8245237 TGGTTACATTAGCTTTTATTAATTTAAATGACA
1 TGTTTTCA-TAG-TTATATTTATCT-CATG-CT
8245270 TGTTTTCATAGTTATATTTATCTCATGCT
1 TGTTTTCATAGTTATATTTATCTCATGCT
8245299 TGTTTT
1 TGTTTT
8245305 TAAAAAAGGA
Statistics
Matches: 48, Mismatches: 15, Indels: 9
0.67 0.21 0.12
Matches are distributed among these distances:
28 6 0.12
29 10 0.21
30 11 0.23
31 11 0.23
32 3 0.06
33 7 0.15
ACGTcount: A:0.24, C:0.11, G:0.11, T:0.53
Consensus pattern (29 bp):
TGTTTTCATAGTTATATTTATCTCATGCT
Found at i:8250602 original size:41 final size:40
Alignment explanation
Indices: 8250557--8250670 Score: 122
Period size: 41 Copynumber: 2.8 Consensus size: 40
8250547 ATAGGTAAAA
8250557 CAGTAGCGACGTTTATGAGAAAAATGCCGCAAAAGGTCAAG
1 CAGTAGCGACGTTTATGAGAAAAATGCCGCAAAAGGT-AAG
** * *
8250598 CAGTAGCGGTGTTTATGAGAAAAATGCTGTAAAAGGTAAG
1 CAGTAGCGACGTTTATGAGAAAAATGCCGCAAAAGGTAAG
* * * * *
8250638 CAATAGC-AGCATTTTTGATAAAAACGCCGCAAA
1 CAGTAGCGA-CGTTTATGAGAAAAATGCCGCAAA
8250671 GTATCATTTT
Statistics
Matches: 59, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
40 26 0.44
41 33 0.56
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.21
Consensus pattern (40 bp):
CAGTAGCGACGTTTATGAGAAAAATGCCGCAAAAGGTAAG
Found at i:8250661 original size:40 final size:41
Alignment explanation
Indices: 8250568--8250670 Score: 118
Period size: 40 Copynumber: 2.5 Consensus size: 41
8250558 AGTAGCGACG
* * **
8250568 TTTATGAGAAAAATGCCGCAAAAGGTCAAGCAGTAGCGGTG
1 TTTATGAGAAAAATGCCGCAAAAGGTCAAGCAATAGCAGCA
* *
8250609 TTTATGAGAAAAATGCTGTAAAAGGT-AAGCAATAGCAGCA
1 TTTATGAGAAAAATGCCGCAAAAGGTCAAGCAATAGCAGCA
* * *
8250649 TTTTTGATAAAAACGCCGCAAA
1 TTTATGAGAAAAATGCCGCAAA
8250671 GTATCATTTT
Statistics
Matches: 51, Mismatches: 11, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
40 27 0.53
41 24 0.47
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (41 bp):
TTTATGAGAAAAATGCCGCAAAAGGTCAAGCAATAGCAGCA
Found at i:8251860 original size:25 final size:25
Alignment explanation
Indices: 8251831--8251878 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
8251821 TATTAGCTCA
8251831 ATTTTTATTATTTCATTTAACAATT
1 ATTTTTATTATTTCATTTAACAATT
*
8251856 ATTTTTATTATTTCATTTTACAA
1 ATTTTTATTATTTCATTTAACAA
8251879 AATCCTGTCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.60
Consensus pattern (25 bp):
ATTTTTATTATTTCATTTAACAATT
Found at i:8254288 original size:31 final size:32
Alignment explanation
Indices: 8254247--8254320 Score: 132
Period size: 31 Copynumber: 2.3 Consensus size: 32
8254237 ATTTTAATTT
8254247 AAATAGTAACTCAAAATAGATGAAAAATTAAC
1 AAATAGTAACTCAAAATAGATGAAAAATTAAC
8254279 AAATA-TAACTCAAAATAGATGAAAAATTAAC
1 AAATAGTAACTCAAAATAGATGAAAAATTAAC
*
8254310 AAATATTAACT
1 AAATAGTAACT
8254321 TTATTAACAT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
31 31 0.76
32 10 0.24
ACGTcount: A:0.59, C:0.09, G:0.07, T:0.24
Consensus pattern (32 bp):
AAATAGTAACTCAAAATAGATGAAAAATTAAC
Found at i:8257592 original size:27 final size:27
Alignment explanation
Indices: 8257561--8257694 Score: 119
Period size: 27 Copynumber: 4.6 Consensus size: 27
8257551 AAAACTTTAG
*
8257561 ATCATAACTTATATAAATATATATCAT
1 ATCATAACTTACATAAATATATATCAT
8257588 ATCATAACTTACATAACTTACATAAATATATATCAT
1 ATCAT-A---AC-T---T-ACATAAATATATATCAT
* * *
8257624 ATCATAACTTACATAACT-TCCATAACTT
1 ATCATAACTTACATAAATAT--ATATCAT
8257652 A-CATAACTTACATAAATATATATCAT
1 ATCATAACTTACATAAATATATATCAT
8257678 ATCATAACTTACATAAA
1 ATCATAACTTACATAAA
8257695 ACTTTGGATC
Statistics
Matches: 87, Mismatches: 7, Indels: 26
0.73 0.06 0.22
Matches are distributed among these distances:
26 7 0.08
27 42 0.48
28 9 0.10
31 3 0.03
32 3 0.03
35 2 0.02
36 21 0.24
ACGTcount: A:0.47, C:0.17, G:0.00, T:0.36
Consensus pattern (27 bp):
ATCATAACTTACATAAATATATATCAT
Found at i:8257602 original size:9 final size:9
Alignment explanation
Indices: 8257590--8257693 Score: 95
Period size: 9 Copynumber: 11.6 Consensus size: 9
8257580 TATATCATAT
8257590 CATAACTTA
1 CATAACTTA
8257599 CATAACTTA
1 CATAACTTA
*
8257608 CATAA-ATA
1 CATAACTTA
* * *
8257616 TATATCATA
1 CATAACTTA
8257625 TCATAACTTA
1 -CATAACTTA
*
8257635 CATAACTTC
1 CATAACTTA
8257644 CATAACTTA
1 CATAACTTA
8257653 CATAACTTA
1 CATAACTTA
*
8257662 CATAA-ATA
1 CATAACTTA
* * *
8257670 TATATCATA
1 CATAACTTA
8257679 TCATAACTTA
1 -CATAACTTA
8257689 CATAA
1 CATAA
8257694 AACTTTGGAT
Statistics
Matches: 77, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
8 10 0.13
9 55 0.71
10 12 0.16
ACGTcount: A:0.46, C:0.19, G:0.00, T:0.35
Consensus pattern (9 bp):
CATAACTTA
Found at i:8257604 original size:36 final size:36
Alignment explanation
Indices: 8257563--8257648 Score: 154
Period size: 36 Copynumber: 2.4 Consensus size: 36
8257553 AACTTTAGAT
*
8257563 CATAACTTATATAAATATATATCATATCATAACTTA
1 CATAACTTACATAAATATATATCATATCATAACTTA
8257599 CATAACTTACATAAATATATATCATATCATAACTTA
1 CATAACTTACATAAATATATATCATATCATAACTTA
*
8257635 CATAACTTCCATAA
1 CATAACTTACATAA
8257649 CTTACATAAC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 48 1.00
ACGTcount: A:0.47, C:0.17, G:0.00, T:0.36
Consensus pattern (36 bp):
CATAACTTACATAAATATATATCATATCATAACTTA
Found at i:8257649 original size:54 final size:54
Alignment explanation
Indices: 8257590--8257693 Score: 208
Period size: 54 Copynumber: 1.9 Consensus size: 54
8257580 TATATCATAT
8257590 CATAACTTACATAACTTACATAAATATATATCATATCATAACTTACATAACTTC
1 CATAACTTACATAACTTACATAAATATATATCATATCATAACTTACATAACTTC
8257644 CATAACTTACATAACTTACATAAATATATATCATATCATAACTTACATAA
1 CATAACTTACATAACTTACATAAATATATATCATATCATAACTTACATAA
8257694 AACTTTGGAT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.46, C:0.19, G:0.00, T:0.35
Consensus pattern (54 bp):
CATAACTTACATAACTTACATAAATATATATCATATCATAACTTACATAACTTC
Found at i:8265869 original size:21 final size:23
Alignment explanation
Indices: 8265843--8265889 Score: 64
Period size: 21 Copynumber: 2.1 Consensus size: 23
8265833 AATTGAAACT
8265843 TTATATGAAT-ATTT-T-ATGGAA
1 TTATATG-ATGATTTGTCATGGAA
8265864 TTATATGATGATTTGTCATGGAA
1 TTATATGATGATTTGTCATGGAA
8265887 TTA
1 TTA
8265890 GAGCTTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 2 0.09
21 11 0.48
22 1 0.04
23 9 0.39
ACGTcount: A:0.34, C:0.02, G:0.17, T:0.47
Consensus pattern (23 bp):
TTATATGATGATTTGTCATGGAA
Found at i:8267193 original size:50 final size:51
Alignment explanation
Indices: 8267116--8267244 Score: 208
Period size: 50 Copynumber: 2.5 Consensus size: 51
8267106 GACCATGGCA
*
8267116 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAAG-ACAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATC-AAGCACAAATG
8267167 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGCACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGCACAAATG
* *
8267217 ACAAGTGAAAAGTGGTAGCTTCGGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
8267245 CTGATCAGTG
Statistics
Matches: 73, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
49 3 0.04
50 45 0.62
51 25 0.34
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGCACAAATG
Done.