Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 290 of 349
Found at i:97089841 original size:46 final size:46
Alignment explanation
Indices: 97089791--97089919 Score: 195
Period size: 46 Copynumber: 2.8 Consensus size: 46
97089781 TGGTTGAGCA
*
97089791 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
97089837 TCCGAACTCGTTGAGTTGAGTCCGAGTTTACTCATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
97089883 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
97089920 GCGGGTTACA
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:97092028 original size:12 final size:12
Alignment explanation
Indices: 97092011--97092035 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
97092001 AATAGTAAAA
97092011 TATCATTCAACT
1 TATCATTCAACT
97092023 TATCATTCAACT
1 TATCATTCAACT
97092035 T
1 T
97092036 CCAAAGCCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.24, G:0.00, T:0.44
Consensus pattern (12 bp):
TATCATTCAACT
Found at i:97101920 original size:29 final size:27
Alignment explanation
Indices: 97101825--97101936 Score: 84
Period size: 29 Copynumber: 4.0 Consensus size: 27
97101815 TACATACATG
97101825 CATATAGCCCACTAGGCCCAACCTT-ATT
1 CATATAGCCCACTAGGCCCAA--TTCATT
* * *
97101853 CAAATGGCCCATCT-GGCCTAATTCATATT
1 CATATAGCCCA-CTAGGCCCAATTC--ATT
* *
97101882 CTTATGGCCCACTAGGCCCAATTCACCTT
1 CATATAGCCCACTAGGCCCAATTCA--TT
* *
97101911 CATATAGCCCATTAGGCCCAAATCAT
1 CATATAGCCCACTAGGCCCAATTCAT
97101937 ATTATACTCA
Statistics
Matches: 67, Mismatches: 10, Indels: 15
0.73 0.11 0.16
Matches are distributed among these distances:
26 2 0.03
27 2 0.03
28 17 0.25
29 46 0.69
ACGTcount: A:0.28, C:0.33, G:0.12, T:0.27
Consensus pattern (27 bp):
CATATAGCCCACTAGGCCCAATTCATT
Found at i:97102045 original size:19 final size:19
Alignment explanation
Indices: 97102011--97102058 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
97102001 ATGGGCCCAA
*
97102011 TAGCCCA-TCAGGCCCATT
1 TAGCCCATTCTGGCCCATT
97102029 TAGCCCATTCTGGCCCATT
1 TAGCCCATTCTGGCCCATT
* *
97102048 TGGCCAATTCT
1 TAGCCCATTCT
97102059 AAACCCAAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 7 0.27
19 19 0.73
ACGTcount: A:0.19, C:0.35, G:0.17, T:0.29
Consensus pattern (19 bp):
TAGCCCATTCTGGCCCATT
Found at i:97102182 original size:8 final size:8
Alignment explanation
Indices: 97102161--97102204 Score: 54
Period size: 8 Copynumber: 5.6 Consensus size: 8
97102151 CAACTTTTGT
*
97102161 CTTTTCGG
1 CTTTTCGA
*
97102169 CATTTCGA
1 CTTTTCGA
97102177 CTTTTC-A
1 CTTTTCGA
*
97102184 GTTTTCGA
1 CTTTTCGA
97102192 CTTTTCGA
1 CTTTTCGA
97102200 CTTTT
1 CTTTT
97102205 TGGCTTTTTG
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
7 6 0.20
8 24 0.80
ACGTcount: A:0.11, C:0.23, G:0.14, T:0.52
Consensus pattern (8 bp):
CTTTTCGA
Found at i:97103453 original size:8 final size:8
Alignment explanation
Indices: 97103442--97103479 Score: 58
Period size: 8 Copynumber: 4.8 Consensus size: 8
97103432 AAAAATTCAA
97103442 GATTTTGG
1 GATTTTGG
*
97103450 GATTTTTG
1 GATTTTGG
*
97103458 GATTTCGG
1 GATTTTGG
97103466 GATTTTGG
1 GATTTTGG
97103474 GATTTT
1 GATTTT
97103480 TGGGGCGTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.13, C:0.03, G:0.32, T:0.53
Consensus pattern (8 bp):
GATTTTGG
Found at i:97108263 original size:33 final size:33
Alignment explanation
Indices: 97108226--97108288 Score: 126
Period size: 33 Copynumber: 1.9 Consensus size: 33
97108216 AATGTTGATC
97108226 ATGCAAAAGAAATGTGAAAGTAATGAATTCATG
1 ATGCAAAAGAAATGTGAAAGTAATGAATTCATG
97108259 ATGCAAAAGAAATGTGAAAGTAATGAATTC
1 ATGCAAAAGAAATGTGAAAGTAATGAATTC
97108289 GTGACTATGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.49, C:0.06, G:0.21, T:0.24
Consensus pattern (33 bp):
ATGCAAAAGAAATGTGAAAGTAATGAATTCATG
Found at i:97113217 original size:27 final size:27
Alignment explanation
Indices: 97113187--97113276 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
97113177 TGGGTTCGCT
*
97113187 AGTTCGTTTGGCGAGCTAGGGTTTACC
1 AGTTGGTTTGGCGAGCTAGGGTTTACC
* * *
97113214 AGTTGGTTTGGCAAGCTGGGGTTTGCC
1 AGTTGGTTTGGCGAGCTAGGGTTTACC
* * **
97113241 AGTTGGTTTGGTGAGCTAAGGTTCGCC
1 AGTTGGTTTGGCGAGCTAGGGTTTACC
97113268 AGTTGGTTT
1 AGTTGGTTT
97113277 ATCAAACTAG
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.13, C:0.14, G:0.37, T:0.36
Consensus pattern (27 bp):
AGTTGGTTTGGCGAGCTAGGGTTTACC
Found at i:97113290 original size:27 final size:27
Alignment explanation
Indices: 97113178--97113291 Score: 95
Period size: 27 Copynumber: 4.2 Consensus size: 27
97113168 ATTACAAGTT
* * * *
97113178 GGGTTCGCTAGTTCGTTTGGCGAGCTA
1 GGGTTCGCCAGTTGGTTTGTCAAGCTA
** * *
97113205 GGGTTTACCAGTTGGTTTGGCAAGCTG
1 GGGTTCGCCAGTTGGTTTGTCAAGCTA
* *
97113232 GGGTTTGCCAGTTGGTTTGGT-GAGCTA
1 GGGTTCGCCAGTTGGTTT-GTCAAGCTA
* * *
97113259 AGGTTCGCCAGTTGGTTTATCAAACTA
1 GGGTTCGCCAGTTGGTTTGTCAAGCTA
97113286 GGGTTC
1 GGGTTC
97113292 TGAAAGATCC
Statistics
Matches: 69, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
26 1 0.01
27 67 0.97
28 1 0.01
ACGTcount: A:0.15, C:0.16, G:0.35, T:0.34
Consensus pattern (27 bp):
GGGTTCGCCAGTTGGTTTGTCAAGCTA
Found at i:97113290 original size:54 final size:54
Alignment explanation
Indices: 97113178--97113291 Score: 129
Period size: 54 Copynumber: 2.1 Consensus size: 54
97113168 ATTACAAGTT
* * * * * *
97113178 GGGTTCGCTAGTTCGTTTGGCGAGCTAGGGTTTACCAGTTGGTTTGGCAAGCTG
1 GGGTTCGCCAGTTCGTTTGGCGAGCTAAGGTTCACCAGTTGGTTTAGCAAACTA
* * * * *
97113232 GGGTTTGCCAGTTGGTTTGGTGAGCTAAGGTTCGCCAGTTGGTTTATCAAACTA
1 GGGTTCGCCAGTTCGTTTGGCGAGCTAAGGTTCACCAGTTGGTTTAGCAAACTA
97113286 GGGTTC
1 GGGTTC
97113292 TGAAAGATCC
Statistics
Matches: 48, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.15, C:0.16, G:0.35, T:0.34
Consensus pattern (54 bp):
GGGTTCGCCAGTTCGTTTGGCGAGCTAAGGTTCACCAGTTGGTTTAGCAAACTA
Found at i:97126241 original size:18 final size:18
Alignment explanation
Indices: 97126218--97126252 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
97126208 ACATGGGCTC
97126218 AAGGCACGAGCGTGTCCA
1 AAGGCACGAGCGTGTCCA
*
97126236 AAGGCACGGGCGTGTCC
1 AAGGCACGAGCGTGTCC
97126253 TAAGCCACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.23, C:0.29, G:0.37, T:0.11
Consensus pattern (18 bp):
AAGGCACGAGCGTGTCCA
Found at i:97129068 original size:14 final size:14
Alignment explanation
Indices: 97129036--97129074 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
97129026 TCTAAGACTT
*
97129036 TGTTTTTTAGGTTA
1 TGTTTTTTATGTTA
97129050 T-TTTTTTATGTTA
1 TGTTTTTTATGTTA
*
97129063 TGTTTTATATGT
1 TGTTTTTTATGT
97129075 ACTCCTATCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 12 0.55
14 10 0.45
ACGTcount: A:0.15, C:0.00, G:0.15, T:0.69
Consensus pattern (14 bp):
TGTTTTTTATGTTA
Found at i:97133973 original size:20 final size:20
Alignment explanation
Indices: 97133948--97134037 Score: 90
Period size: 20 Copynumber: 4.3 Consensus size: 20
97133938 AAATAAGAAG
97133948 TGCCTCTATTTGCACTTCGA
1 TGCCTCTATTTGCACTTCGA
* *
97133968 TGCCTCTGTTTGCACTTCGG
1 TGCCTCTATTTGCACTTCGA
* *
97133988 TGCCTCTATATTTGCACTACGG
1 TGCCTC--TATTTGCACTTCGA
* * *
97134010 TGCCTCTGTTAGCATTTCGA
1 TGCCTCTATTTGCACTTCGA
97134030 TGCTCTCT
1 TGC-CTCT
97134038 GGTGTGTTTT
Statistics
Matches: 58, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
20 36 0.62
21 4 0.07
22 18 0.31
ACGTcount: A:0.12, C:0.29, G:0.19, T:0.40
Consensus pattern (20 bp):
TGCCTCTATTTGCACTTCGA
Found at i:97134004 original size:22 final size:20
Alignment explanation
Indices: 97133947--97134016 Score: 95
Period size: 20 Copynumber: 3.4 Consensus size: 20
97133937 AAAATAAGAA
97133947 GTGCCTCTATTTGCACTTCG
1 GTGCCTCTATTTGCACTTCG
* *
97133967 ATGCCTCTGTTTGCACTTCG
1 GTGCCTCTATTTGCACTTCG
*
97133987 GTGCCTCTATATTTGCACTACG
1 GTGCCTC--TATTTGCACTTCG
97134009 GTGCCTCT
1 GTGCCTCT
97134017 GTTAGCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
20 25 0.58
22 18 0.42
ACGTcount: A:0.11, C:0.30, G:0.20, T:0.39
Consensus pattern (20 bp):
GTGCCTCTATTTGCACTTCG
Found at i:97134005 original size:42 final size:41
Alignment explanation
Indices: 97133947--97134037 Score: 112
Period size: 42 Copynumber: 2.2 Consensus size: 41
97133937 AAAATAAGAA
* *
97133947 GTGCCTC-TATTTGCACTTCGATGCCTCTGTTTGCACTTCG
1 GTGCCTCTTATTTGCACTACGATGCCTCTGTTAGCACTTCG
* *
97133987 GTGCCTCTATATTTGCACTACGGTGCCTCTGTTAGCATTTCG
1 GTGCCTCT-TATTTGCACTACGATGCCTCTGTTAGCACTTCG
*
97134029 ATGCTCTCT
1 GTGC-CTCT
97134038 GGTGTGTTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
40 7 0.16
42 32 0.74
43 4 0.09
ACGTcount: A:0.12, C:0.29, G:0.20, T:0.40
Consensus pattern (41 bp):
GTGCCTCTTATTTGCACTACGATGCCTCTGTTAGCACTTCG
Found at i:97136033 original size:9 final size:9
Alignment explanation
Indices: 97136019--97136044 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
97136009 ACTAAACCGA
97136019 GAACTTTCG
1 GAACTTTCG
97136028 GAACTTTCG
1 GAACTTTCG
97136037 GAACTTTC
1 GAACTTTC
97136045 ATGTCACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (9 bp):
GAACTTTCG
Found at i:97138690 original size:34 final size:35
Alignment explanation
Indices: 97138582--97138755 Score: 269
Period size: 35 Copynumber: 5.0 Consensus size: 35
97138572 TATATGAACC
97138582 TTGTATAATCGGCCATATGTGATGATATATTGAAT
1 TTGTATAATCGGCCATATGTGATGATATATTGAAT
*
97138617 TTGTATAATCGACCATATGTGATGATATATTGAAT
1 TTGTATAATCGGCCATATGTGATGATATATTGAAT
* * *
97138652 TTGTATATTCGGCTATATGTGATGGTATA-TGAAT
1 TTGTATAATCGGCCATATGTGATGATATATTGAAT
* *
97138686 TTGTATATTCGGCTATATGTGATGATATATTGAATT
1 TTGTATAATCGGCCATATGTGATGATATATTGAA-T
*
97138722 TTGTATAATCAGCCATATGTGATGATATATTGAA
1 TTGTATAATCGGCCATATGTGATGATATATTGAA
97138756 CATTTAATAT
Statistics
Matches: 128, Mismatches: 9, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
34 33 0.26
35 63 0.49
36 32 0.25
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (35 bp):
TTGTATAATCGGCCATATGTGATGATATATTGAAT
Found at i:97145543 original size:40 final size:40
Alignment explanation
Indices: 97145480--97145587 Score: 171
Period size: 40 Copynumber: 2.7 Consensus size: 40
97145470 CCCCTGTTTG
* * *
97145480 GTACCCCTGAATGCACATCTGTGCCCTTGTTTGTATTTCA
1 GTACCCCTAAATGCACATCTGTGCCCCTGTTTGTAGTTCA
* *
97145520 GTACCCCTAAATGCGCATTTGTGCCCCTGTTTGTAGTTCA
1 GTACCCCTAAATGCACATCTGTGCCCCTGTTTGTAGTTCA
97145560 GTACCCCTAAATGCACATCTGTGCCCCT
1 GTACCCCTAAATGCACATCTGTGCCCCT
97145588 AATTGCACTT
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 61 1.00
ACGTcount: A:0.19, C:0.31, G:0.18, T:0.33
Consensus pattern (40 bp):
GTACCCCTAAATGCACATCTGTGCCCCTGTTTGTAGTTCA
Found at i:97152621 original size:6 final size:6
Alignment explanation
Indices: 97152610--97152683 Score: 73
Period size: 6 Copynumber: 12.5 Consensus size: 6
97152600 TTGTACCTCC
* *
97152610 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTAT TTTCCCT CTTTTC-
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTT-TCT -TTTTCT
**
97152659 TTCACT TTTTC- TTTTC- TTTTCT TTT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTT
97152684 CTTAATTTTC
Statistics
Matches: 56, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
5 13 0.23
6 38 0.68
7 2 0.04
8 3 0.05
ACGTcount: A:0.03, C:0.20, G:0.00, T:0.77
Consensus pattern (6 bp):
TTTTCT
Found at i:97153347 original size:228 final size:227
Alignment explanation
Indices: 97152889--97153696 Score: 1044
Period size: 228 Copynumber: 3.5 Consensus size: 227
97152879 GTTTTCTCTT
*
97152889 AAGCTTGTTTGGCTTCCTAGAAAATCTGAGTTTTCTTCCTTCCCTCTTTTTTTTTCTTTTTTTCA
1 AAGCTTGTTTGGCTTCCTAGAAAATCTGGGTTTTCTTCCTTCCCTC--TTTTTTTC---TTTTC-
* * * * *
97152954 TCTTATTTTTTTT-CTCGCCAGCCAAACAGGCTTTCACTAGTTCTCTTTTTCTTTTTGTTATGCA
60 TCTTCTTTTTTTTCCTTGCTAGCCAAACAGGCTTTCACCAGTCCTCTTTTTCTTTTTGTTATGCA
* * ** *
97153018 TCATCATATTTTTTAGTTCTTTAGGAAAGAAAAGAAACTTTTTTCATCAACTAAAAACTCAAGAG
125 TCATCATATTTTTTAGTTCTTTAGAAAAGAAAAG-AACCTCCTTCATCAACTGAAAACTCAAGAG
* *
97153083 AAACCATGAATGAGATGGAAAAGAACATGTTCTTTTAGG
189 AAACCATGAATGAGATGGAAAAGAACAAGCTCTTTTAGG
* *
97153122 AAGCTTGTTTGGCTTCCTAGTAAATCTGGGTTTTATTCCTTCCCTCGTTTTTTTCTTTTCTCGTT
1 AAGCTTGTTTGGCTTCCTAGAAAATCTGGGTTTTCTTCCTTCCCTC-TTTTTTTCTTTTCTC-TT
*
97153187 CTTTTTTTTCCTTGCTAGCCAAACAGGCTTTCACCAATCCTCTTTTTCTTTTTGTTATGCATCAT
64 CTTTTTTTTCCTTGCTAGCCAAACAGGCTTTCACCAGTCCTCTTTTTCTTTTTGTTATGCATCAT
* *
97153252 C-TATTTTTTAGTTCTTTAGAAAAGAAAAGAACCTCCTTCATCAACTGAAAACTCAAAAGAAGCC
129 CATATTTTTTAGTTCTTTAGAAAAGAAAAGAACCTCCTTCATCAACTGAAAACTCAAGAGAAACC
97153316 ATGAATGAGATGGAAAAGAACAAGCTCTTTTAGG
194 ATGAATGAGATGGAAAAGAACAAGCTCTTTTAGG
* * * * *
97153350 CAGTTTGTTTGGCTTCCTAGAAAATCTGGATTTTCTTTCTTCCCTCTTTTTTTCTTTTCTTGTTC
1 AAGCTTGTTTGGCTTCCTAGAAAATCTGGGTTTTCTTCCTTCCCTCTTTTTTTCTTTTC-TCTTC
* * * *
97153415 -TTTTTTTCCTTACTAGCCAAATAAGCTTTCACCAGTCCTCTTTTTCTTTTTGTTTTGCATCATC
65 TTTTTTTTCCTTGCTAGCCAAACAGGCTTTCACCAGTCCTCTTTTTCTTTTTGTTATGCATCATC
* * * *
97153479 GTACTTTTTAGTTCTTT-GAAAAAGAAAAAAAACC-CTCTTCAAT-AACTGAAAAATCAAGAGAA
130 ATATTTTTTAGTTCTTTAG-AAAAG-AAAAGAACCTC-CTTC-ATCAACTGAAAACTCAAGAGAA
** * *
97153541 ATTATGAATGAGATGGAAAAGAACAAGCCCTTCTAGG
191 ACCATGAATGAGATGGAAAAGAACAAGCTCTTTTAGG
* * *
97153578 AAGCTTGTTTGGCTTCTTAGAAAATTTGGGTTTTCTTCC-T---TCTTTTTTTCTTTTCTCCT-T
1 AAGCTTGTTTGGCTTCCTAGAAAATCTGGGTTTTCTTCCTTCCCTCTTTTTTTCTTTTCTCTTCT
* * *
97153638 TTTTTTTCCTTCCTAGCCAAACAGGCTTTCACTAGTCCTCTTTTTATTTTTGTTATGCA
66 TTTTTTTCCTTGCTAGCCAAACAGGCTTTCACCAGTCCTCTTTTTCTTTTTGTTATGCA
97153697 ATTAATAATG
Statistics
Matches: 512, Mismatches: 54, Indels: 28
0.86 0.09 0.05
Matches are distributed among these distances:
223 55 0.11
224 15 0.03
226 60 0.12
227 38 0.07
228 198 0.39
229 44 0.09
230 51 0.10
232 8 0.02
233 43 0.08
ACGTcount: A:0.25, C:0.20, G:0.13, T:0.43
Consensus pattern (227 bp):
AAGCTTGTTTGGCTTCCTAGAAAATCTGGGTTTTCTTCCTTCCCTCTTTTTTTCTTTTCTCTTCT
TTTTTTTCCTTGCTAGCCAAACAGGCTTTCACCAGTCCTCTTTTTCTTTTTGTTATGCATCATCA
TATTTTTTAGTTCTTTAGAAAAGAAAAGAACCTCCTTCATCAACTGAAAACTCAAGAGAAACCAT
GAATGAGATGGAAAAGAACAAGCTCTTTTAGG
Found at i:97153628 original size:15 final size:15
Alignment explanation
Indices: 97153608--97153649 Score: 50
Period size: 16 Copynumber: 2.8 Consensus size: 15
97153598 AAAATTTGGG
97153608 TTTTCTTCCTTCTTT
1 TTTTCTTCCTTCTTT
* *
97153623 TTTTCTTTTCTCCTTT
1 TTTTC-TTCCTTCTTT
97153639 TTTT-TTCCTTC
1 TTTTCTTCCTTC
97153650 CTAGCCAAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
14 5 0.23
15 5 0.23
16 12 0.55
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTTCTTCCTTCTTT
Found at i:97158196 original size:7 final size:8
Alignment explanation
Indices: 97158174--97158206 Score: 57
Period size: 8 Copynumber: 4.0 Consensus size: 8
97158164 AGTTAGATTG
97158174 TATTTTGTT
1 TATTTT-TT
97158183 TATTTTTT
1 TATTTTTT
97158191 TATTTTTT
1 TATTTTTT
97158199 TATTTTTT
1 TATTTTTT
97158207 CTGTTAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 18 0.75
9 6 0.25
ACGTcount: A:0.12, C:0.00, G:0.03, T:0.85
Consensus pattern (8 bp):
TATTTTTT
Found at i:97165009 original size:23 final size:23
Alignment explanation
Indices: 97164983--97165028 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
97164973 TAAAAATTAA
*
97164983 TATAAATTTAACGCAAATATACC
1 TATAAATTTAACACAAATATACC
97165006 TATAAATTTAACACAAATATACC
1 TATAAATTTAACACAAATATACC
97165029 AAAACATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.50, C:0.17, G:0.02, T:0.30
Consensus pattern (23 bp):
TATAAATTTAACACAAATATACC
Found at i:97165683 original size:38 final size:38
Alignment explanation
Indices: 97165627--97165713 Score: 131
Period size: 38 Copynumber: 2.3 Consensus size: 38
97165617 ATAAATAACT
*
97165627 TTGGCCACCTACTTCACCACCCTTT-TTGGCCACCCACC
1 TTGGCCACCTACTCCACCA-CCTTTGTTGGCCACCCACC
97165665 TTGGCCACCTACTCCACCACCTTTGTTGGCCACCCACC
1 TTGGCCACCTACTCCACCACCTTTGTTGGCCACCCACC
* *
97165703 TAGGCTACCTA
1 TTGGCCACCTA
97165714 AACCACCCCA
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
37 5 0.11
38 40 0.89
ACGTcount: A:0.17, C:0.45, G:0.13, T:0.25
Consensus pattern (38 bp):
TTGGCCACCTACTCCACCACCTTTGTTGGCCACCCACC
Found at i:97166185 original size:3 final size:3
Alignment explanation
Indices: 97166171--97166256 Score: 65
Period size: 3 Copynumber: 28.3 Consensus size: 3
97166161 GAGCTTTGTT
* *
97166171 TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
97166215 TT- TCTCA TGTA TATA TTA TTA TT- TATA TTA TTA TTA -TA TTA T
1 TTA T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T
97166257 ATATGCCCTC
Statistics
Matches: 68, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
2 7 0.10
3 52 0.76
4 7 0.10
5 2 0.03
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:97166209 original size:27 final size:27
Alignment explanation
Indices: 97166170--97166256 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 27
97166160 AGAGCTTTGT
97166170 TTTATTATT-TTATTATTTTTACTATTA
1 TTTA-TATTATTATTATTTTTACTATTA
*
97166197 TTTATATTATTATTATTATTT-C--TCA
1 TTTATATTATTATTATT-TTTACTATTA
* * *
97166222 TGTATA-TATTATTATTTATATTATTA
1 TTTATATTATTATTATTTTTACTATTA
97166248 -TTATATTAT
1 TTTATATTAT
97166257 ATATGCCCTC
Statistics
Matches: 48, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
23 2 0.04
24 10 0.21
25 11 0.23
26 9 0.19
27 13 0.27
28 3 0.06
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (27 bp):
TTTATATTATTATTATTTTTACTATTA
Found at i:97166231 original size:21 final size:18
Alignment explanation
Indices: 97166171--97166260 Score: 92
Period size: 18 Copynumber: 4.7 Consensus size: 18
97166161 GAGCTTTGTT
*
97166171 TTATTATTTTATTATTTTTA
1 TTATTA-TTTA-TATTATTA
*
97166191 CTATTATTTATATTATTA
1 TTATTATTTATATTATTA
*
97166209 TTATTATTTCTCATGTATATA
1 TTATTATTTAT-AT-TAT-TA
97166230 TTATTATTTATATTATTA
1 TTATTATTTATATTATTA
97166248 TTA-TATTATATAT
1 TTATTATT-TATAT
97166261 GCCCTCTCCA
Statistics
Matches: 61, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
17 4 0.07
18 26 0.43
19 9 0.15
20 10 0.16
21 12 0.20
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.64
Consensus pattern (18 bp):
TTATTATTTATATTATTA
Found at i:97166542 original size:116 final size:114
Alignment explanation
Indices: 97166420--97166633 Score: 256
Period size: 119 Copynumber: 1.8 Consensus size: 114
97166410 TAATATATTA
* *
97166420 TTAATA-TTACTCATATTTTCATTATT-T-TTGCTATCA-CTATTATTATATATTAGTGTATATT
1 TTAATATTTA-TCATATTTGC-TTATTGTATTGCTAT-ATCTATTATTATATAGTAGTGTATATT
*
97166481 TTTATGTATATACATATATATATTTATATATAGTATTGTTTTTTATTACTTTAAT
63 TCTAT-TATATAC--ATATATATTTATATATAGTATTGTTTTTTATTACTTTAAT
* * * * *
97166536 TTAATATTTTTATTATATTTGCTTTTTGTATTTCTATATTTATTATTATATAGTAGTGTGTATTT
1 TTAATA--TTTATCATATTTGCTTATTGTATTGCTATATCTATTATTATATAGTAGTGTATATTT
97166601 CTATTATATACATATATATTTATATATAGTATT
64 CTATTATATACATATATATTTATATATAGTATT
97166634 ATTGTTCACT
Statistics
Matches: 84, Mismatches: 8, Indels: 12
0.81 0.08 0.12
Matches are distributed among these distances:
116 28 0.33
117 4 0.05
118 17 0.20
119 35 0.42
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.58
Consensus pattern (114 bp):
TTAATATTTATCATATTTGCTTATTGTATTGCTATATCTATTATTATATAGTAGTGTATATTTCT
ATTATATACATATATATTTATATATAGTATTGTTTTTTATTACTTTAAT
Found at i:97169077 original size:19 final size:19
Alignment explanation
Indices: 97169055--97169101 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
97169045 CTTCCTTTCT
97169055 TTTGCATT-CATTCCATACA
1 TTTGCATTACATTCCA-ACA
*
97169074 TTTGCATTACATTGCAACA
1 TTTGCATTACATTCCAACA
97169093 TTTGCATTA
1 TTTGCATTA
97169102 AACTTTCACT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.43
Consensus pattern (19 bp):
TTTGCATTACATTCCAACA
Found at i:97171891 original size:6 final size:6
Alignment explanation
Indices: 97171880--97171906 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
97171870 GTTATATGGA
97171880 AAAGGC AAAGGC AAAGGC AAAGGC AAA
1 AAAGGC AAAGGC AAAGGC AAAGGC AAA
97171907 AAAAAATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.56, C:0.15, G:0.30, T:0.00
Consensus pattern (6 bp):
AAAGGC
Found at i:97173182 original size:61 final size:64
Alignment explanation
Indices: 97173097--97173215 Score: 192
Period size: 61 Copynumber: 1.9 Consensus size: 64
97173087 GTAACGCATC
*
97173097 TAGTTAGGAGCATTTGATTCATTTC-AT-A-A-CATCCTAATTATTTGACATAAAGCATCACATT
1 TAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGACAT-AAGCATCACATT
97173158 TAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGACATAAGCAT
1 TAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGACATAAGCAT
97173216 AGATACATGG
Statistics
Matches: 53, Mismatches: 1, Indels: 5
0.90 0.02 0.08
Matches are distributed among these distances:
61 25 0.47
62 2 0.04
63 1 0.02
64 7 0.13
65 18 0.34
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (64 bp):
TAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGACATAAGCATCACATT
Found at i:97173510 original size:68 final size:68
Alignment explanation
Indices: 97173398--97173597 Score: 287
Period size: 68 Copynumber: 2.9 Consensus size: 68
97173388 TTGGAAATTA
*
97173398 CAAATTTTTT-TTCCCTGAAATGACATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTT
1 CAAATTTTTTCTT-CCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTT
97173462 TCAG
65 TCAG
* *
97173466 -AGGATTTTTTCTTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAACAGATCTCCTTGAAGTT
1 CA-AATTTTTTCTTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTT
97173530 TCAG
65 TCAG
** * ** *
97173534 CAAACCTCTTCTTCCAAAAATGGCATTGGAGCGACTAAAAGCCACAGCAGATCTCCTTGAAGTT
1 CAAATTTTTTCTTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTT
97173598 CCAGTGGAAG
Statistics
Matches: 118, Mismatches: 11, Indels: 6
0.87 0.08 0.04
Matches are distributed among these distances:
67 1 0.01
68 114 0.97
69 3 0.03
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28
Consensus pattern (68 bp):
CAAATTTTTTCTTCCTGAAATGGCATTGGAGCGGCTAAAAGCCACAGCAGATCTCCTTGAAGTTT
CAG
Found at i:97173893 original size:132 final size:132
Alignment explanation
Indices: 97173757--97174503 Score: 761
Period size: 132 Copynumber: 5.7 Consensus size: 132
97173747 ACAGCAGATT
*
97173757 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAGACAGCAGATTTGACATCCTTGTGCTTATAGG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAGACAGCAGATTTGACATCCCTGTGCTTATAGG
97173822 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAA
66 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAA
97173887 CA
131 CA
* *
97173889 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAGACAGCAGATTTGACATCCCTGTGCTTATAGG
97173954 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTAC-GATGAAGCAGATCGAAGATTTCA
66 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAG-TGAAGCAGATCGAAGATTTCA
*
97174018 GCA
130 ACA
* * *
97174021 TGGAATCCCTGTGCTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGCTTATAGG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAGACAGCAGATTTGACATCCCTGTGCTTATAGG
* * * * * * * * * **
97174086 GAACA-AGTTGAAAATAGCAGATTTGGCATCCCTGTACTTATAGGGAA-TAGATCGAAGATAGCA
66 GAACAGA-TCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCA
97174149 GATC-
130 -A-CA
* * * * *** *
97174153 TGACATTCCTGTGCTTA-CGGTGAAGC-AGATCGAAGATTTCAGCA-TGGA-ATCCCTGTGCTTA
1 TGGCATCCCTGTGCTTATAGG-GAA-CAAG-TTGAAGACAGCAG-ATTTGACATCCCTGTGCTTA
* *
97174214 TAGGGAAC-GAATCGAAGATAGCAGATCTGACATTCCTGTACTTACGGTGAAGCAGATCGAAGAT
62 TAGGGAACAG-ATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGAT
*
97174278 TTCAGCA
126 TTCAACA
* * * * * * *
97174285 TGGAATCCCTGTGCTTATAGGGAAC-GGATCGAAGATAGCAGATCTGACATTCCTGTGCTTA-CG
1 TGGCATCCCTGTGCTTATAGGGAACAAG-TTGAAGACAGCAGATTTGACATCCCTGTGCTTATAG
** * * * * *
97174348 GTGAAGCAGATCGAAGATTTCAGCAT-GGA-ATCCCTGTGCTTATAGGGAA-CA-AGTTGAAGAT
65 G-GAA-CAGATCGAAGATAGCAG-ATCTGACATTCCTGTGCTTACAGTGAAGCAGA-TCGAAGAT
** **
97174409 AGCAGATT
126 TTCA-ACA
* * * * * *
97174417 TGGCATCCCTGTGTTTATAGGGAACCAGTTGAAGACATCAGATTTGGCATCCCTGTGTTTATGGG
1 TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAGACAGCAGATTTGACATCCCTGTGCTTATAGG
*
97174482 GAACAAATCGAAGA-AGCAGATC
66 GAACAGATCGAAGATAGCAGATC
97174504 AAGAACTCAA
Statistics
Matches: 511, Mismatches: 79, Indels: 52
0.80 0.12 0.08
Matches are distributed among these distances:
129 2 0.00
130 5 0.01
131 57 0.11
132 394 0.77
133 49 0.10
134 4 0.01
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (132 bp):
TGGCATCCCTGTGCTTATAGGGAACAAGTTGAAGACAGCAGATTTGACATCCCTGTGCTTATAGG
GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAA
CA
Found at i:97173939 original size:176 final size:176
Alignment explanation
Indices: 97173655--97174503 Score: 849
Period size: 176 Copynumber: 4.8 Consensus size: 176
97173645 GGAACAGACT
* *
97173655 GAAGATAGCAGATCTGACATTTCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAGCATGGCATC
1 GAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAACATGGCATC
97173720 CCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACA-A
66 CCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAGA
* * * *
97173784 GTTGAAGACAGCAGATTTGACA-TCCTTGTGCTTATAGGGAA-CAGATC
131 -TCGAAGATAGCAGATCTGACATTCC-TGTGCTTA-CGGGAAGCAGATC
97173831 GAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAACATGGCATC
1 GAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAACATGGCATC
97173896 CCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAGA
66 CCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAGA
*
97173961 TCGAAGATAGCAGATCTGACATTCCTGTGCTTACGATGAAGCAGATC
131 TCGAAGATAGCAGATCTGACATTCCTGTGCTTACG-GGAAGCAGATC
** * * * * * ** **
97174008 GAAGATTTCAGCAT-GGA-ATCCCTGTGCTTATAGGGAA-CA-AGTTGAAGATAGCAGATTTGGC
1 GAAGATAGCAG-ATCTGACATTCCTGTGCTTACAGTGAAGCAGA-TCGAAGATTTCA-ACATGGC
* * *
97174069 ATCCCTGTGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGGCATCCCTGTACTTATAGGGAAT
63 ATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAAC
97174134 AGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACGGTGAAGCAGATC
128 AGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACGG-GAAGCAGATC
** * * * * ** *
97174184 GAAGATTTCAGCAT-GGA-ATCCCTGTGCTTATAGGGAA-C-GAATCGAAGATAGCAGATC-TGA
1 GAAGATAGCAG-ATCTGACATTCCTGTGCTTACAGTGAAGCAG-ATCGAAGATTTCA-A-CATGG
* * * * * *** *
97174244 CATTCCTGTACTTA-CGGTGAAGC-AGATCGAAGATTTCAGCA--TGGAATCCCTGTGCTTATAG
62 CATCCCTGTGCTTATAGG-GAA-CAAG-TTGAAAACAGCAG-ATTTGGCATCCCTGTGCTTATAG
*
97174305 GGAACGGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACGGTGAAGCAGATC
123 GGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACGG-GAAGCAGATC
** * * * * * ** **
97174360 GAAGATTTCAGCAT-GGA-ATCCCTGTGCTTATAGGGAA-CA-AGTTGAAGATAGCAGATTTGGC
1 GAAGATAGCAG-ATCTGACATTCCTGTGCTTACAGTGAAGCAGA-TCGAAGATTTCA-ACATGGC
* * * * * *
97174421 ATCCCTGTGTTTATAGGGAACCAGTTGAAGACATCAGATTTGGCATCCCTGTGTTTATGGGGAAC
63 ATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAAC
*
97174486 AAATCGAAGA-AGCAGATC
128 AGATCGAAGATAGCAGATC
97174504 AAGAACTCAA
Statistics
Matches: 600, Mismatches: 51, Indels: 45
0.86 0.07 0.06
Matches are distributed among these distances:
174 2 0.00
175 34 0.06
176 527 0.88
177 34 0.06
178 3 0.00
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (176 bp):
GAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAACATGGCATC
CCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAGA
TCGAAGATAGCAGATCTGACATTCCTGTGCTTACGGGAAGCAGATC
Found at i:97174495 original size:44 final size:44
Alignment explanation
Indices: 97173655--97174502 Score: 648
Period size: 44 Copynumber: 19.3 Consensus size: 44
97173645 GGAACAGACT
* * ** * * *
97173655 GAAGATAGCAGATCTGACATTTCTGTGCTTACAGTGAAGCAGATC
1 GAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA-CAAATC
** * *
97173700 GAAGATTTCAGCA--TGGCATCCCTGTGCTTATAGGGAACAAGTT
1 GAAGATAGCAG-ATTTGGCATCCCTGTGCTTATAGGGAACAAATC
* * * *
97173743 GAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAAGTT
1 GAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAAATC
* * * *
97173787 GAAGACAGCAGATTTGACATCCTTGTGCTTATAGGGAACAGATC
1 GAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAAATC
* * * * * *
97173831 GAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATC
1 GAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAA-CAAATC
** ** * *
97173876 GAAGATTTCA-ACATGGCATCCCTGTGCTTATAGGGAACAAGTT
1 GAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAAATC
* * *
97173919 GAAAACAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAGATC
1 GAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAAATC
* * * * * *
97173963 GAAGATAGCAGATCTGACATTCCTGTGCTTA-CGATGAAGCAGATC
1 GAAGATAGCAGATTTGGCATCCCTGTGCTTATAG-GGAA-CAAATC
** * * *
97174008 GAAGATTTCAGCA--TGGAATCCCTGTGCTTATAGGGAACAAGTT
1 GAAGATAGCAG-ATTTGGCATCCCTGTGCTTATAGGGAACAAATC
* *
97174051 GAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAAGTT
1 GAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAAATC
* * * *
97174095 GAAAATAGCAGATTTGGCATCCCTGTACTTATAGGGAATAGATC
1 GAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAAATC
* * * * *
97174139 GAAGATAGCAGATCTGACATTCCTGTGCTTA-CGGTGAAGCAGATC
1 GAAGATAGCAGATTTGGCATCCCTGTGCTTATAGG-GAA-CAAATC
** * *
97174184 GAAGATTTCAGCA--TGGAATCCCTGTGCTTATAGGGAACGAATC
1 GAAGATAGCAG-ATTTGGCATCCCTGTGCTTATAGGGAACAAATC
* * * * * *
97174227 GAAGATAGCAGATCTGACATTCCTGTACTTA-CGGTGAAGCAGATC
1 GAAGATAGCAGATTTGGCATCCCTGTGCTTATAGG-GAA-CAAATC
** * **
97174272 GAAGATTTCAGCA--TGGAATCCCTGTGCTTATAGGGAACGGATC
1 GAAGATAGCAG-ATTTGGCATCCCTGTGCTTATAGGGAACAAATC
* * * * *
97174315 GAAGATAGCAGATCTGACATTCCTGTGCTTA-CGGTGAAGCAGATC
1 GAAGATAGCAGATTTGGCATCCCTGTGCTTATAGG-GAA-CAAATC
** * * *
97174360 GAAGATTTCAGCA--TGGAATCCCTGTGCTTATAGGGAACAAGTT
1 GAAGATAGCAG-ATTTGGCATCCCTGTGCTTATAGGGAACAAATC
* * * *
97174403 GAAGATAGCAGATTTGGCATCCCTGTGTTTATAGGGAACCAGTT
1 GAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAAATC
* * * *
97174447 GAAGACATCAGATTTGGCATCCCTGTGTTTATGGGGAACAAATC
1 GAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAAATC
97174491 GAAGA-AGCAGAT
1 GAAGATAGCAGAT
97174503 CAAGAACTCA
Statistics
Matches: 642, Mismatches: 132, Indels: 60
0.77 0.16 0.07
Matches are distributed among these distances:
42 5 0.01
43 83 0.13
44 463 0.72
45 86 0.13
46 5 0.01
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (44 bp):
GAAGATAGCAGATTTGGCATCCCTGTGCTTATAGGGAACAAATC
Found at i:97174738 original size:4 final size:4
Alignment explanation
Indices: 97174729--97174766 Score: 76
Period size: 4 Copynumber: 9.5 Consensus size: 4
97174719 CCCAAACACA
97174729 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
97174767 CCTTGGCCAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 34 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:97174810 original size:13 final size:13
Alignment explanation
Indices: 97174794--97174853 Score: 50
Period size: 13 Copynumber: 4.7 Consensus size: 13
97174784 ACCACCCTTT
97174794 TTGGCCACCCACC
1 TTGGCCACCCACC
*
97174807 TTGGCCACCTA-C
1 TTGGCCACCCACC
*** ***
97174819 TCCACCACCCTTG
1 TTGGCCACCCACC
97174832 TTGGCCACCCACC
1 TTGGCCACCCACC
97174845 TTGGCCACC
1 TTGGCCACC
97174854 TAAACCACCC
Statistics
Matches: 33, Mismatches: 13, Indels: 2
0.69 0.27 0.04
Matches are distributed among these distances:
12 7 0.21
13 26 0.79
ACGTcount: A:0.15, C:0.50, G:0.15, T:0.20
Consensus pattern (13 bp):
TTGGCCACCCACC
Found at i:97174864 original size:22 final size:22
Alignment explanation
Indices: 97174836--97174886 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
97174826 CCCTTGTTGG
97174836 CCACCCACCTTGGCCACCTAAA
1 CCACCCACCTTGGCCACCTAAA
97174858 CCACCCACCTTGGCCACCTAAA
1 CCACCCACCTTGGCCACCTAAA
*
97174880 CGACCCA
1 CCACCCA
97174887 ACCACTCCAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.27, C:0.51, G:0.10, T:0.12
Consensus pattern (22 bp):
CCACCCACCTTGGCCACCTAAA
Found at i:97174869 original size:38 final size:38
Alignment explanation
Indices: 97174766--97174855 Score: 171
Period size: 38 Copynumber: 2.4 Consensus size: 38
97174756 TAAATAAATA
*
97174766 ACCTTGGCCACCTACTCCACCACCCTTTTTGGCCACCC
1 ACCTTGGCCACCTACTCCACCACCCTTGTTGGCCACCC
97174804 ACCTTGGCCACCTACTCCACCACCCTTGTTGGCCACCC
1 ACCTTGGCCACCTACTCCACCACCCTTGTTGGCCACCC
97174842 ACCTTGGCCACCTA
1 ACCTTGGCCACCTA
97174856 AACCACCCAC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 51 1.00
ACGTcount: A:0.17, C:0.49, G:0.12, T:0.22
Consensus pattern (38 bp):
ACCTTGGCCACCTACTCCACCACCCTTGTTGGCCACCC
Found at i:97174985 original size:20 final size:21
Alignment explanation
Indices: 97174960--97175000 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
97174950 ATGTTAGAGG
97174960 GGAGGT-TTTTTTTGTTTTTT
1 GGAGGTGTTTTTTTGTTTTTT
97174980 GGAGGTGTTTTTTTGTTTTTT
1 GGAGGTGTTTTTTTGTTTTTT
97175001 TGGAAAGAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.05, C:0.00, G:0.27, T:0.68
Consensus pattern (21 bp):
GGAGGTGTTTTTTTGTTTTTT
Found at i:97175347 original size:3 final size:3
Alignment explanation
Indices: 97175333--97175413 Score: 62
Period size: 3 Copynumber: 26.3 Consensus size: 3
97175323 GAGCTTTGTT
* *
97175333 TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
97175377 TT- TCTCA TGTA TATA TTA TTA TT- TATA TTA TTA TTA T
1 TTA T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA T
97175414 ATATATATGC
Statistics
Matches: 64, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
2 5 0.08
3 50 0.78
4 7 0.11
5 2 0.03
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:97175378 original size:12 final size:13
Alignment explanation
Indices: 97175333--97175417 Score: 76
Period size: 12 Copynumber: 6.8 Consensus size: 13
97175323 GAGCTTTGTT
97175333 TTATTAT-T-TTA
1 TTATTATATATTA
* *
97175344 TTATT-TTTACTA
1 TTATTATATATTA
97175356 TTATT-TATATTA
1 TTATTATATATTA
97175368 TTATTAT-TATT-
1 TTATTATATATTA
97175379 TCTCATGTATATATTA
1 T-T-AT-TATATATTA
97175395 TTATT-TATATTA
1 TTATTATATATTA
97175407 TTATTATATAT
1 TTATTATATAT
97175418 ATATGCCCTC
Statistics
Matches: 62, Mismatches: 3, Indels: 16
0.77 0.04 0.20
Matches are distributed among these distances:
10 1 0.02
11 7 0.11
12 34 0.55
13 9 0.15
14 5 0.08
15 5 0.08
16 1 0.02
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.65
Consensus pattern (13 bp):
TTATTATATATTA
Found at i:97175393 original size:21 final size:18
Alignment explanation
Indices: 97175333--97175413 Score: 90
Period size: 18 Copynumber: 4.2 Consensus size: 18
97175323 GAGCTTTGTT
*
97175333 TTATTATTTTATTATTTTTA
1 TTATTA-TTTA-TATTATTA
*
97175353 CTATTATTTATATTATTA
1 TTATTATTTATATTATTA
*
97175371 TTATTATTTCTCATGTATATA
1 TTATTATTTAT-AT-TAT-TA
97175392 TTATTATTTATATTATTA
1 TTATTATTTATATTATTA
97175410 TTAT
1 TTAT
97175414 ATATATATGC
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
18 22 0.42
19 9 0.17
20 10 0.19
21 12 0.23
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (18 bp):
TTATTATTTATATTATTA
Found at i:97175418 original size:27 final size:27
Alignment explanation
Indices: 97175333--97175419 Score: 76
Period size: 27 Copynumber: 3.4 Consensus size: 27
97175323 GAGCTTTGTT
* * *
97175333 TTAT-TATTTTATTATTTTTACTATTA
1 TTATATATATTATTATTTATATTATTA
* *
97175359 TT-TATATTATTATTA-TTAT-TTCTCA
1 TTATATA-TATTATTATTTATATTATTA
*
97175384 -TGTATATATTATTATTTATATTATTA
1 TTATATATATTATTATTTATATTATTA
97175410 TTATATATAT
1 TTATATATAT
97175420 ATGCCCTCTC
Statistics
Matches: 47, Mismatches: 8, Indels: 11
0.71 0.12 0.17
Matches are distributed among these distances:
24 9 0.19
25 12 0.26
26 11 0.23
27 15 0.32
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.64
Consensus pattern (27 bp):
TTATATATATTATTATTTATATTATTA
Found at i:97175515 original size:18 final size:15
Alignment explanation
Indices: 97175492--97175534 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
97175482 TTCTAACTAC
*
97175492 TATTATTA-TATATG
1 TATTATTATTATTTG
*
97175506 TATGTATTATTGTTTG
1 TAT-TATTATTATTTG
97175522 TATTATTATTATT
1 TATTATTATTATT
97175535 ATCACCCCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
14 3 0.12
15 14 0.58
16 7 0.29
ACGTcount: A:0.28, C:0.00, G:0.09, T:0.63
Consensus pattern (15 bp):
TATTATTATTATTTG
Found at i:97180101 original size:57 final size:57
Alignment explanation
Indices: 97180032--97180147 Score: 232
Period size: 57 Copynumber: 2.0 Consensus size: 57
97180022 GTTGTACACA
97180032 TAATCAACAGAGATGAAAAAGGAAGAGAGGGAGCAATGTCAAAGAAGGCTAGTTCAC
1 TAATCAACAGAGATGAAAAAGGAAGAGAGGGAGCAATGTCAAAGAAGGCTAGTTCAC
97180089 TAATCAACAGAGATGAAAAAGGAAGAGAGGGAGCAATGTCAAAGAAGGCTAGTTCAC
1 TAATCAACAGAGATGAAAAAGGAAGAGAGGGAGCAATGTCAAAGAAGGCTAGTTCAC
97180146 TA
1 TA
97180148 GACAAACAGA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 59 1.00
ACGTcount: A:0.46, C:0.12, G:0.28, T:0.15
Consensus pattern (57 bp):
TAATCAACAGAGATGAAAAAGGAAGAGAGGGAGCAATGTCAAAGAAGGCTAGTTCAC
Found at i:97184123 original size:49 final size:50
Alignment explanation
Indices: 97184016--97184109 Score: 127
Period size: 50 Copynumber: 1.9 Consensus size: 50
97184006 GTAATAAAGG
* * *
97184016 CCCTACTCCTAGACACATGGGGAGAGGTTTACGGAAGGTGGTACTGATGA
1 CCCTACTCCTAGACACATGGGGAGAGGCTCACGGAAGGTGGTAATGATGA
* * *
97184066 CCCTACTCCTAGACGCGTGGGG-GAGGCTCACGGAATGTGGTAAT
1 CCCTACTCCTAGACACATGGGGAGAGGCTCACGGAAGGTGGTAAT
97184110 TATGGTCTTA
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
49 18 0.47
50 20 0.53
ACGTcount: A:0.23, C:0.22, G:0.33, T:0.21
Consensus pattern (50 bp):
CCCTACTCCTAGACACATGGGGAGAGGCTCACGGAAGGTGGTAATGATGA
Found at i:97184677 original size:29 final size:30
Alignment explanation
Indices: 97184626--97184687 Score: 108
Period size: 29 Copynumber: 2.1 Consensus size: 30
97184616 ACTTATTTTA
97184626 TTGTTAATTTTATTATTATTTTAAAGGCAT
1 TTGTTAATTTTATTATTATTTTAAAGGCAT
*
97184656 TTGTTAATTTT-TTATTATTTTAGAGGCAT
1 TTGTTAATTTTATTATTATTTTAAAGGCAT
97184685 TTG
1 TTG
97184688 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 20 0.65
30 11 0.35
ACGTcount: A:0.26, C:0.03, G:0.13, T:0.58
Consensus pattern (30 bp):
TTGTTAATTTTATTATTATTTTAAAGGCAT
Found at i:97191335 original size:8 final size:8
Alignment explanation
Indices: 97191322--97191348 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
97191312 GTTATCTTTT
97191322 TCTTTATC
1 TCTTTATC
97191330 TCTTTATC
1 TCTTTATC
97191338 TCTTTATC
1 TCTTTATC
97191346 TCT
1 TCT
97191349 GCTTTGTGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.11, C:0.26, G:0.00, T:0.63
Consensus pattern (8 bp):
TCTTTATC
Found at i:97191752 original size:22 final size:23
Alignment explanation
Indices: 97191713--97191755 Score: 79
Period size: 22 Copynumber: 1.9 Consensus size: 23
97191703 CAGTTAGAGG
97191713 GTTACTTTTGTATCTACCACAAA
1 GTTACTTTTGTATCTACCACAAA
97191736 GTTACTTTTG-ATCTACCACA
1 GTTACTTTTGTATCTACCACA
97191756 GATTTAGTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (23 bp):
GTTACTTTTGTATCTACCACAAA
Found at i:97204820 original size:4 final size:4
Alignment explanation
Indices: 97204811--97204858 Score: 66
Period size: 4 Copynumber: 12.8 Consensus size: 4
97204801 CTACGTTTGA
*
97204811 AAAT AAAT AAAT AAAT AAA- AAAT AAA- AAAT AAA- AAAT ATAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
97204856 AAA
1 AAA
97204859 AGTATATATT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
3 9 0.23
4 30 0.77
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (4 bp):
AAAT
Found at i:97204824 original size:8 final size:7
Alignment explanation
Indices: 97204815--97204859 Score: 63
Period size: 7 Copynumber: 6.1 Consensus size: 7
97204805 GTTTGAAAAT
97204815 AAATAAA
1 AAATAAA
97204822 TAAATAAA
1 -AAATAAA
97204830 AAATAAA
1 AAATAAA
97204837 AAATAAA
1 AAATAAA
*
97204844 AAATATAT
1 AAATA-AA
97204852 AAATAAA
1 AAATAAA
97204859 A
1 A
97204860 GTATATATTG
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
7 21 0.62
8 13 0.38
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (7 bp):
AAATAAA
Found at i:97204835 original size:15 final size:15
Alignment explanation
Indices: 97204815--97204859 Score: 74
Period size: 15 Copynumber: 3.1 Consensus size: 15
97204805 GTTTGAAAAT
97204815 AAATAAATAAATAAA
1 AAATAAATAAATAAA
97204830 AAATAAA-AAATAAA
1 AAATAAATAAATAAA
*
97204844 AAATATATAAATAAA
1 AAATAAATAAATAAA
97204859 A
1 A
97204860 GTATATATTG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
14 13 0.46
15 15 0.54
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (15 bp):
AAATAAATAAATAAA
Found at i:97205455 original size:13 final size:13
Alignment explanation
Indices: 97205437--97205479 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
97205427 AAATTTGAAT
97205437 TATTTAGTGATAA
1 TATTTAGTGATAA
97205450 TATTTAG-GAT--
1 TATTTAGTGATAA
*
97205460 TATTTAGTAATAA
1 TATTTAGTGATAA
97205473 TATTTAG
1 TATTTAG
97205480 GAAAAATCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
10 7 0.27
11 2 0.08
12 3 0.12
13 14 0.54
ACGTcount: A:0.37, C:0.00, G:0.14, T:0.49
Consensus pattern (13 bp):
TATTTAGTGATAA
Found at i:97205461 original size:23 final size:23
Alignment explanation
Indices: 97205435--97205481 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
97205425 TAAAATTTGA
*
97205435 ATTATTTAGTGATAATATTTAGG
1 ATTATTTAGTAATAATATTTAGG
97205458 ATTATTTAGTAATAATATTTAGG
1 ATTATTTAGTAATAATATTTAGG
97205481 A
1 A
97205482 AAAATCTAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.47
Consensus pattern (23 bp):
ATTATTTAGTAATAATATTTAGG
Found at i:97209826 original size:8 final size:8
Alignment explanation
Indices: 97209813--97209839 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
97209803 CTTTGGTATG
97209813 TTTAAACT
1 TTTAAACT
97209821 TTTAAACT
1 TTTAAACT
97209829 TTTAAACT
1 TTTAAACT
97209837 TTT
1 TTT
97209840 GCTTAGTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.33, C:0.11, G:0.00, T:0.56
Consensus pattern (8 bp):
TTTAAACT
Found at i:97215770 original size:21 final size:21
Alignment explanation
Indices: 97215732--97215771 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
97215722 TTAATTTAAT
*
97215732 ATTATATTTTATAGTATAGTA
1 ATTATATTGTATAGTATAGTA
97215753 ATTATATATGTATA-TATAG
1 ATTATAT-TGTATAGTATAG
97215772 GATAGATTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (21 bp):
ATTATATTGTATAGTATAGTA
Found at i:97216664 original size:24 final size:24
Alignment explanation
Indices: 97216637--97216682 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
97216627 TTATCATCAT
*
97216637 TATGCATAAGTGGAATT-CATAATG
1 TATGCACAAGT-GAATTACATAATG
*
97216661 TATGTACAAGTGAATTACATAA
1 TATGCACAAGTGAATTACATAA
97216683 ATATGATCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.41, C:0.09, G:0.17, T:0.33
Consensus pattern (24 bp):
TATGCACAAGTGAATTACATAATG
Found at i:97223239 original size:22 final size:22
Alignment explanation
Indices: 97223212--97223253 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
97223202 GTTTAATATA
*
97223212 AATTTATATTATAATATAATTC
1 AATTTATAATATAATATAATTC
*
97223234 AATTTATAATATAATTTAAT
1 AATTTATAATATAATATAAT
97223254 AATAATTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (22 bp):
AATTTATAATATAATATAATTC
Found at i:97226485 original size:17 final size:17
Alignment explanation
Indices: 97226459--97226492 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
97226449 AAATATGGTA
97226459 TAATATTAAG-AAATTT
1 TAATATTAAGTAAATTT
97226475 TAATAATTAAGTAAATTT
1 TAAT-ATTAAGTAAATTT
97226493 ATATATGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 6 0.38
18 6 0.38
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (17 bp):
TAATATTAAGTAAATTT
Found at i:97228470 original size:42 final size:43
Alignment explanation
Indices: 97228368--97228530 Score: 140
Period size: 43 Copynumber: 3.8 Consensus size: 43
97228358 AGATCATACA
* * * *
97228368 ATGCCAACGTCCCAAAC-GTGGTCTTACATGTAATCA-AATATCG
1 ATGCCAACGTCCCAGACAG-GGTCTTACACGAAAT-ATAAAATCG
* *
97228411 ATGCC-ACTGTCCTAGACAGGGTCTTACACGAAGT-T-AAATACG
1 ATGCCAAC-GTCCCAGACAGGGTCTTACACGAAATATAAAAT-CG
** * *
97228453 ATGCTGACGTCCCAGACATGGTCTTACACTTAAATATAAAATCG
1 ATGCCAACGTCCCAGACAGGGTCTTACAC-GAAATATAAAATCG
97228497 ATGCCAACGTCCCAGAC-GTGGTCTTACACGAAAT
1 ATGCCAACGTCCCAGACAG-GGTCTTACACGAAAT
97228531 CACACATCGA
Statistics
Matches: 96, Mismatches: 15, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
41 3 0.03
42 27 0.28
43 33 0.34
44 29 0.30
45 4 0.04
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAGGGTCTTACACGAAATATAAAATCG
Found at i:97228511 original size:44 final size:44
Alignment explanation
Indices: 97228368--97228525 Score: 141
Period size: 44 Copynumber: 3.7 Consensus size: 44
97228358 AGATCATACA
* * *
97228368 ATGCCAACGTCCCAAACGTGGTCTTACA-TGT-AATCA-AATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACT-TAAAT-ATAAAATCG
* * * *
97228411 ATGCC-ACTGTCCTAGACAGGGTCTTACAC-GAAGT-T-AAATACG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACTTAAATATAAAAT-CG
**
97228453 ATGCTGACGTCCCAGACATGGTCTTACACTTAAATATAAAATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACTTAAATATAAAATCG
*
97228497 ATGCCAACGTCCCAGACGTGGTCTTACAC
1 ATGCCAACGTCCCAGACATGGTCTTACAC
97228526 GAAATCACAC
Statistics
Matches: 91, Mismatches: 15, Indels: 17
0.74 0.12 0.14
Matches are distributed among these distances:
41 3 0.03
42 27 0.30
43 28 0.31
44 29 0.32
45 4 0.04
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACATGGTCTTACACTTAAATATAAAATCG
Found at i:97233522 original size:13 final size:14
Alignment explanation
Indices: 97233501--97233537 Score: 58
Period size: 13 Copynumber: 2.7 Consensus size: 14
97233491 AAAATTATAA
97233501 AAATTAAAAACT-T
1 AAATTAAAAACTCT
*
97233514 AATTTAAAAACTCT
1 AAATTAAAAACTCT
97233528 AAATTAAAAA
1 AAATTAAAAA
97233538 AAATGTTTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 11 0.52
14 10 0.48
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.30
Consensus pattern (14 bp):
AAATTAAAAACTCT
Found at i:97237099 original size:40 final size:40
Alignment explanation
Indices: 97237044--97237123 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
97237034 CACAAGTTAA
97237044 TTGGACACCAACTCGATTAGAAAAATTATAAAAAAATGAC
1 TTGGACACCAACTCGATTAGAAAAATTATAAAAAAATGAC
97237084 TTGGACACCAACTCGATTAGAAAAATTATAAAAAAATGAC
1 TTGGACACCAACTCGATTAGAAAAATTATAAAAAAATGAC
97237124 ATTTTTTTTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.50, C:0.15, G:0.12, T:0.23
Consensus pattern (40 bp):
TTGGACACCAACTCGATTAGAAAAATTATAAAAAAATGAC
Found at i:97237980 original size:22 final size:22
Alignment explanation
Indices: 97237949--97237991 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
97237939 TTGGACATTA
* *
97237949 TTTGATAAATTCTTAAAATTTT
1 TTTGAAAAATACTTAAAATTTT
97237971 TTTGAAAAATACTTAAAATTT
1 TTTGAAAAATACTTAAAATTT
97237992 CAAATTAACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.49
Consensus pattern (22 bp):
TTTGAAAAATACTTAAAATTTT
Found at i:97246788 original size:17 final size:17
Alignment explanation
Indices: 97246768--97246810 Score: 86
Period size: 17 Copynumber: 2.5 Consensus size: 17
97246758 CCTTGTGACC
97246768 CACACGGGCGTGTGGAG
1 CACACGGGCGTGTGGAG
97246785 CACACGGGCGTGTGGAG
1 CACACGGGCGTGTGGAG
97246802 CACACGGGC
1 CACACGGGC
97246811 ATGTCCAAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.19, C:0.28, G:0.44, T:0.09
Consensus pattern (17 bp):
CACACGGGCGTGTGGAG
Found at i:97246955 original size:23 final size:21
Alignment explanation
Indices: 97246929--97246970 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
97246919 TTATTATTGT
*
97246929 TATATTTATATTTTTAATTTTTA
1 TATATTT-TAATTTT-ATTTTTA
97246952 TATATTTTAATTTTATTTT
1 TATATTTTAATTTTATTTT
97246971 ATTTTTCTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 6 0.33
23 7 0.39
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (21 bp):
TATATTTTAATTTTATTTTTA
Found at i:97246961 original size:16 final size:15
Alignment explanation
Indices: 97246933--97246965 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
97246923 TATTGTTATA
97246933 TTTATATTTTTAATT
1 TTTATATTTTTAATT
97246948 TTTATATATTTTAATT
1 TTTATAT-TTTTAATT
97246964 TT
1 TT
97246966 ATTTTATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (15 bp):
TTTATATTTTTAATT
Found at i:97254703 original size:40 final size:40
Alignment explanation
Indices: 97254659--97254860 Score: 286
Period size: 40 Copynumber: 5.0 Consensus size: 40
97254649 CGATATAATA
97254659 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATAACATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATAACATT
*
97254699 CCAGCATGAAGCCTGCGGGTCTTTAAGCCCGGATAACATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATAACATT
* *
97254739 CCAGCA-TATAGCCTGCGGGTCTTTAAGCCAGGAT-ACAATT
1 CCAGCACGA-AGCCTGCGGGTCTTTAAGCCCGGATAAC-ATT
* *
97254779 CTAGCACGAAGCCTGCAGGTCTTTAAGCCCGGAT-ACAATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATAAC-ATT
*
97254819 CCAGCACGAAGCCTGCGGGTCTTTAAG-CCGAGATAAAATT
1 CCAGCACGAAGCCTGCGGGTCTTTAAGCCCG-GATAACATT
97254859 CC
1 CC
97254861 TCAAGAATCA
Statistics
Matches: 147, Mismatches: 10, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
39 6 0.04
40 139 0.95
41 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.24, T:0.22
Consensus pattern (40 bp):
CCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATAACATT
Found at i:97259046 original size:42 final size:42
Alignment explanation
Indices: 97258938--97259066 Score: 120
Period size: 44 Copynumber: 3.0 Consensus size: 42
97258928 ATATGTGTTA
* * *
97258938 TCGTGTAAGACCATGTCTGGGATGTTGGCATCG-ACTTAAAATT
1 TCGTGTAAGACCTTGTCTGGGACGTTGGCATCGTACTT--GATT
* *
97258981 TACATGTAAGA-CTACGTCTGGGACGTTGGCATCGTACTTGATT
1 T-CGTGTAAGACCT-TGTCTGGGACGTTGGCATCGTACTTGATT
* *
97259024 TCGTATAAGACCTTGTCTGGGACAG-TGGCATCGATATTTGATT
1 TCGTGTAAGACCTTGTCTGGGAC-GTTGGCATCG-TACTTGATT
97259067 ACATGTAAAA
Statistics
Matches: 71, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
42 24 0.34
43 17 0.24
44 26 0.37
45 4 0.06
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (42 bp):
TCGTGTAAGACCTTGTCTGGGACGTTGGCATCGTACTTGATT
Found at i:97266650 original size:42 final size:42
Alignment explanation
Indices: 97266546--97266701 Score: 136
Period size: 43 Copynumber: 3.6 Consensus size: 42
97266536 ATATGTGTTA
* * * *
97266546 TCGTGTAGGACCATGTTTGGGACATTGGCATCGAATTATAATT
1 TCGTGTAAGACCATGTCTGGGACGTTGGCATCGTATT-TAATT
* *
97266589 TACGTGTAAGACTACGTCTGGGACGTTGGCATCGTACTTT-ATT
1 T-CGTGTAAGACCATGTCTGGGACGTTGGCATCGTA-TTTAATT
* * * *
97266632 TCGTGTAAGACCTTGTCTGGGATAG-TGCCATCGATATTTGATT
1 TCGTGTAAGACCATGTCTGGGA-CGTTGGCATCG-TATTTAATT
* * *
97266675 ACATGTAAGACCATATCTGGGACGTTG
1 TCGTGTAAGACCATGTCTGGGACGTTG
97266702 AAATTGTATG
Statistics
Matches: 91, Mismatches: 16, Indels: 12
0.76 0.13 0.10
Matches are distributed among these distances:
42 29 0.32
43 31 0.34
44 29 0.32
45 2 0.02
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.34
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGACGTTGGCATCGTATTTAATT
Found at i:97270422 original size:41 final size:40
Alignment explanation
Indices: 97270295--97270439 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
97270285 CTCGCACAAG
* * * * *
97270295 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* *
97270335 GCCTTCGGGACTTAGCCCAGATTTAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* *
97270375 GCCTTC-GGATCTTAGTCCGGATATAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
*
97270416 GCCTTCGGGACTTAGCCTGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
97270440 CATTCGAGTA
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 3 0.03
40 56 0.63
41 27 0.30
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:97306183 original size:19 final size:18
Alignment explanation
Indices: 97306139--97306193 Score: 51
Period size: 18 Copynumber: 3.0 Consensus size: 18
97306129 ATGACTGGTT
*
97306139 TCAGTTTTTCT-ATTTTTCG
1 TCAGTTTTT-TAATTTTT-A
97306158 TCA-TTTTTATAATTTTTA
1 TCAGTTTTT-TAATTTTTA
*
97306176 TCAGTTTTTTAATGTTTA
1 TCAGTTTTTTAATTTTTA
97306194 ACAATTGATT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
18 17 0.55
19 14 0.45
ACGTcount: A:0.20, C:0.09, G:0.07, T:0.64
Consensus pattern (18 bp):
TCAGTTTTTTAATTTTTA
Found at i:97321411 original size:25 final size:24
Alignment explanation
Indices: 97321370--97321419 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 24
97321360 ATTAAACTGA
*
97321370 TTTTTTTAATAATAATATAGATAT
1 TTTTTTTAATAATAATATAAATAT
97321394 TTTTATTTAAT-ATCAATATAAATAT
1 TTTT-TTTAATAAT-AATATAAATAT
97321419 T
1 T
97321420 AAAATAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 6 0.26
25 17 0.74
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (24 bp):
TTTTTTTAATAATAATATAAATAT
Found at i:97321728 original size:29 final size:30
Alignment explanation
Indices: 97321695--97321752 Score: 73
Period size: 29 Copynumber: 1.9 Consensus size: 30
97321685 ATTATGTAAA
* *
97321695 GTTCAGTTTAGTCCATGT-ATTAAAAATAG
1 GTTCAATTTAATCCATGTAATTAAAAATAG
*
97321724 GTTCAATTTAATCCTTGTAAATTAAAAAT
1 GTTCAATTTAATCCATGT-AATTAAAAAT
97321753 TTATTCAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 15 0.62
31 9 0.38
ACGTcount: A:0.38, C:0.10, G:0.12, T:0.40
Consensus pattern (30 bp):
GTTCAATTTAATCCATGTAATTAAAAATAG
Found at i:97334222 original size:42 final size:43
Alignment explanation
Indices: 97334112--97334200 Score: 128
Period size: 42 Copynumber: 2.1 Consensus size: 43
97334102 GGTGCAGGAT
* * *
97334112 TCACATGGCCAAGACACACGCCCGT-TGGCTAGGCCTTGTGTC
1 TCACATAGCTAAGACACACGCCCGTGTGGCTAGGCCATGTGTC
*
97334154 TCACATAGCTAAGACACACACCCGTGT-GCTAGGCCATGTGTC
1 TCACATAGCTAAGACACACGCCCGTGTGGCTAGGCCATGTGTC
97334196 TCACA
1 TCACA
97334201 CGTTTGAGAC
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
42 41 0.98
43 1 0.02
ACGTcount: A:0.24, C:0.33, G:0.22, T:0.21
Consensus pattern (43 bp):
TCACATAGCTAAGACACACGCCCGTGTGGCTAGGCCATGTGTC
Found at i:97346754 original size:21 final size:22
Alignment explanation
Indices: 97346714--97346754 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
97346704 TTCCAAATAA
* *
97346714 AACATTATATCATTTCTAATTC
1 AACATTATATCAATTATAATTC
97346736 AACATT-TATCAATTATAAT
1 AACATTATATCAATTATAAT
97346755 CGGGCATGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (22 bp):
AACATTATATCAATTATAATTC
Found at i:97347993 original size:15 final size:16
Alignment explanation
Indices: 97347966--97347995 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
97347956 AGATATTCCA
97347966 ATTTAGTCCCATTTTT
1 ATTTAGTCCCATTTTT
97347982 ATTTAG-CCCATTTT
1 ATTTAGTCCCATTTT
97347996 GGCAATTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.20, C:0.20, G:0.07, T:0.53
Consensus pattern (16 bp):
ATTTAGTCCCATTTTT
Found at i:97350599 original size:26 final size:26
Alignment explanation
Indices: 97350527--97350599 Score: 94
Period size: 26 Copynumber: 2.8 Consensus size: 26
97350517 AGCTCTTATA
* *
97350527 AGCTTCCTGA-TATATGGCTCATTGTG
1 AGCTTCCTAATTA-ATGGCTCTTTGTG
* *
97350553 AGCTTCCCAATTAAAGGCTCTTTGTG
1 AGCTTCCTAATTAATGGCTCTTTGTG
97350579 AGCTTCCTAATTAATGGCTCT
1 AGCTTCCTAATTAATGGCTCT
97350600 CCGGAGCTTC
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
26 38 0.95
27 2 0.05
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.37
Consensus pattern (26 bp):
AGCTTCCTAATTAATGGCTCTTTGTG
Found at i:97350679 original size:25 final size:25
Alignment explanation
Indices: 97350540--97350680 Score: 83
Period size: 25 Copynumber: 5.6 Consensus size: 25
97350530 TTCCTGATAT
*
97350540 ATGGCTCATTGTGAGCTTCCCAATTA
1 ATGGCTC-TTCTGAGCTTCCCAATTA
* * *
97350566 AAGGCTCTTTGTGAGCTTCCTAATTA
1 ATGGCTC-TTCTGAGCTTCCCAATTA
* *
97350592 ATGGCTCTCCGGAGCTTCCCAA-T-
1 ATGGCTCTTCTGAGCTTCCCAATTA
* ** **
97350615 ATGGCTC-GCTTGAATTTCCTGA-TA
1 ATGGCTCTTC-TGAGCTTCCCAATTA
* * * *
97350639 TATGGTTATCCGGAGCTTCCCAATTA
1 -ATGGCTCTTCTGAGCTTCCCAATTA
97350665 ATGGCTCTTCTGAGCT
1 ATGGCTCTTCTGAGCT
97350681 ACCTGTTATT
Statistics
Matches: 84, Mismatches: 26, Indels: 11
0.69 0.21 0.09
Matches are distributed among these distances:
22 1 0.01
23 15 0.18
24 1 0.01
25 35 0.42
26 32 0.38
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.35
Consensus pattern (25 bp):
ATGGCTCTTCTGAGCTTCCCAATTA
Found at i:97354148 original size:20 final size:18
Alignment explanation
Indices: 97354113--97354169 Score: 62
Period size: 20 Copynumber: 3.0 Consensus size: 18
97354103 TTTGCAACTC
97354113 AAAAAATTATAAAAAATCT
1 AAAAAA-TATAAAAAATCT
*
97354132 AAAGAATATATAGAAAA-CTT
1 AAA-AA-ATATAAAAAATC-T
97354152 AAAAAATATAAAAAATCT
1 AAAAAATATAAAAAATCT
97354170 TAAACCCTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
18 10 0.31
19 7 0.22
20 14 0.44
21 1 0.03
ACGTcount: A:0.67, C:0.05, G:0.04, T:0.25
Consensus pattern (18 bp):
AAAAAATATAAAAAATCT
Found at i:97359206 original size:17 final size:17
Alignment explanation
Indices: 97359173--97359205 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
97359163 CAAATATCTA
*
97359173 GGTTTGGTTTAGTTTTT
1 GGTTTGGTTGAGTTTTT
97359190 GGTTTGGTTGA-TTTTT
1 GGTTTGGTTGAGTTTTT
97359206 TTGCTTAGCC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.06, C:0.00, G:0.30, T:0.64
Consensus pattern (17 bp):
GGTTTGGTTGAGTTTTT
Found at i:97359242 original size:4 final size:4
Alignment explanation
Indices: 97359233--97359267 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
97359223 ATAGCCTTTC
97359233 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
97359268 GGCACAATGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:97359480 original size:29 final size:27
Alignment explanation
Indices: 97359448--97359519 Score: 65
Period size: 28 Copynumber: 2.5 Consensus size: 27
97359438 TTTGATATTT
*
97359448 TTTAAATTTTTAAAAAATTTATAATATAA
1 TTTAAATTTTTAAAAAAATT-TAA-ATAA
*
97359477 TTT-ATTTTTTACAAAAAAATTTAAATAA
1 TTTAAATTTTT--AAAAAAATTTAAATAA
*
97359505 TTATATATTTTTAAA
1 TT-TAAATTTTTAAA
97359520 TTAAAAAATT
Statistics
Matches: 35, Mismatches: 4, Indels: 9
0.73 0.08 0.19
Matches are distributed among these distances:
28 15 0.43
29 7 0.20
30 13 0.37
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (27 bp):
TTTAAATTTTTAAAAAAATTTAAATAA
Found at i:97359516 original size:30 final size:30
Alignment explanation
Indices: 97359459--97359517 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
97359449 TTAAATTTTT
*
97359459 AAAAAATTTATAATATAATTTATTTTTTAC
1 AAAAAAATTATAATATAATTTATTTTTTAC
97359489 AAAAAAATT-TAA-ATAATTATATATTTTTA
1 AAAAAAATTATAATATAATT-TAT-TTTTTA
97359518 AATTAAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
28 6 0.23
29 6 0.23
30 14 0.54
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (30 bp):
AAAAAAATTATAATATAATTTATTTTTTAC
Found at i:97360864 original size:28 final size:29
Alignment explanation
Indices: 97360833--97360902 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 29
97360823 GTCACCAAAT
*
97360833 AATTTAAAAAATTATAAATA-TTCAAAAA
1 AATTCAAAAAATTATAAATACTTCAAAAA
**
97360861 AATTCAAAAAA-TATAAATACTTCATCAA
1 AATTCAAAAAATTATAAATACTTCAAAAA
97360889 AATTCAAAAAATTA
1 AATTCAAAAAATTA
97360903 GCATGAAGTA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
27 8 0.22
28 27 0.73
29 2 0.05
ACGTcount: A:0.61, C:0.09, G:0.00, T:0.30
Consensus pattern (29 bp):
AATTCAAAAAATTATAAATACTTCAAAAA
Found at i:97366236 original size:40 final size:39
Alignment explanation
Indices: 97366188--97366325 Score: 138
Period size: 40 Copynumber: 3.5 Consensus size: 39
97366178 ACACACTAGT
*
97366188 TTGACACCCAGTGCCTCATCAGATAATTCGAAGTAGTAA
1 TTGACACCCAGTGCCTCATCAGATAAATCGAAGTAGTAA
* ** *
97366227 CTTGGCACCCAGTATCTCATCAAATAAATCTGAAGTAGTAAA
1 -TTGACACCCAGTGCCTCATCAGATAAATC-GAAGTAGT-AA
* * *
97366269 TTGACACCTAGTGTCTCATC-GATTAAACCGAAGTA--AA
1 TTGACACCCAGTGCCTCATCAGA-TAAATCGAAGTAGTAA
*
97366306 TTGACACCCTGTGCCTCATC
1 TTGACACCCAGTGCCTCATC
97366326 GACTTGAAGT
Statistics
Matches: 82, Mismatches: 13, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
37 19 0.23
40 31 0.38
41 30 0.37
42 2 0.02
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.27
Consensus pattern (39 bp):
TTGACACCCAGTGCCTCATCAGATAAATCGAAGTAGTAA
Found at i:97366286 original size:41 final size:40
Alignment explanation
Indices: 97366188--97366325 Score: 138
Period size: 41 Copynumber: 3.5 Consensus size: 40
97366178 ACACACTAGT
* * * *
97366188 TTGACACCCAGTGCCTCATCAGATAATTCGAAGTAGTAAC
1 TTGACACCCAGTGTCTCATCAAATAAATCGAAGTAGTAAA
* *
97366228 TTGGCACCCAGTATCTCATCAAATAAATCTGAAGTAGTAAA
1 TTGACACCCAGTGTCTCATCAAATAAATC-GAAGTAGTAAA
* * * *
97366269 TTGACACCTAGTGTCTCATCGATTAAACCG-A--AGTAAA
1 TTGACACCCAGTGTCTCATCAAATAAATCGAAGTAGTAAA
* *
97366306 TTGACACCCTGTGCCTCATC
1 TTGACACCCAGTGTCTCATC
97366326 GACTTGAAGT
Statistics
Matches: 82, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
37 23 0.28
39 1 0.01
40 25 0.30
41 33 0.40
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.27
Consensus pattern (40 bp):
TTGACACCCAGTGTCTCATCAAATAAATCGAAGTAGTAAA
Found at i:97367219 original size:25 final size:25
Alignment explanation
Indices: 97367173--97367236 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
97367163 AGGCCGTGGC
*
97367173 TTTCTTTCTTTTTTCCTTTTTC-TT
1 TTTCTTTCTTTTTTCCTGTTTCGTT
97367197 TTTCTTTCTTTCTTTCCTGTTTCGTT
1 TTTCTTTCTTT-TTTCCTGTTTCGTT
* *
97367223 TTGCTTTGTTTTTT
1 TTTCTTTCTTTTTT
97367237 TTTTCTATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
24 11 0.31
25 13 0.37
26 11 0.31
ACGTcount: A:0.00, C:0.19, G:0.06, T:0.75
Consensus pattern (25 bp):
TTTCTTTCTTTTTTCCTGTTTCGTT
Found at i:97368540 original size:20 final size:20
Alignment explanation
Indices: 97368478--97368540 Score: 56
Period size: 20 Copynumber: 3.1 Consensus size: 20
97368468 CCTGAATTGC
* *
97368478 ACATACGTGCCCTTATTTGT
1 ACATACGTGCCCCTGTTTGT
* * *
97368498 AC-TTCGATACCCCTGAATTGT
1 ACATACG-TGCCCCTG-TTTGT
97368519 ACATACGTGCCCCTGTTTGT
1 ACATACGTGCCCCTGTTTGT
97368539 AC
1 AC
97368541 TTCGGTACCC
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
19 3 0.09
20 13 0.41
21 13 0.41
22 3 0.09
ACGTcount: A:0.21, C:0.29, G:0.16, T:0.35
Consensus pattern (20 bp):
ACATACGTGCCCCTGTTTGT
Found at i:97368551 original size:20 final size:21
Alignment explanation
Indices: 97368487--97368554 Score: 68
Period size: 21 Copynumber: 3.3 Consensus size: 21
97368477 CACATACGTG
* *
97368487 CCCTTATTTGTACTTCGATAC
1 CCCTGATTTGTACTTCGGTAC
* * *
97368508 CCCTGAATTGTACATAC-GTGC
1 CCCTGATTTGTAC-TTCGGTAC
97368529 CCCTG-TTTGTACTTCGGTAC
1 CCCTGATTTGTACTTCGGTAC
97368549 CCCTGA
1 CCCTGA
97368555 ATGACACATT
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
19 2 0.06
20 14 0.39
21 18 0.50
22 2 0.06
ACGTcount: A:0.18, C:0.31, G:0.16, T:0.35
Consensus pattern (21 bp):
CCCTGATTTGTACTTCGGTAC
Found at i:97368571 original size:41 final size:41
Alignment explanation
Indices: 97368467--97368577 Score: 152
Period size: 41 Copynumber: 2.7 Consensus size: 41
97368457 TTTAATTATT
*
97368467 CCCTGAATTGCACATACGTGCCCTTATTTGTACTTCGATAC
1 CCCTGAATTGCACATACGTGCCCTTGTTTGTACTTCGATAC
* * *
97368508 CCCTGAATTGTACATACGTGCCCCTGTTTGTACTTCGGTAC
1 CCCTGAATTGCACATACGTGCCCTTGTTTGTACTTCGATAC
* *
97368549 CCCTGAA-TGACACATTCATGCCCTTGTTT
1 CCCTGAATTG-CACATACGTGCCCTTGTTT
97368578 ACACTTGGGT
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
40 2 0.03
41 59 0.97
ACGTcount: A:0.20, C:0.30, G:0.16, T:0.34
Consensus pattern (41 bp):
CCCTGAATTGCACATACGTGCCCTTGTTTGTACTTCGATAC
Found at i:97369484 original size:12 final size:12
Alignment explanation
Indices: 97369467--97369492 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
97369457 GGTAGTACAT
97369467 GGCCTGGCACAC
1 GGCCTGGCACAC
97369479 GGCCTGGCACAC
1 GGCCTGGCACAC
97369491 GG
1 GG
97369493 GCGTGTAAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.38, G:0.38, T:0.08
Consensus pattern (12 bp):
GGCCTGGCACAC
Found at i:97373503 original size:48 final size:48
Alignment explanation
Indices: 97373437--97373575 Score: 165
Period size: 48 Copynumber: 2.9 Consensus size: 48
97373427 GGTAAATTGT
* * * *
97373437 TGATGCCCTATCCCAGACATGGTCTTACATTGGCTCACATATCGAGG-
1 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGAGGC
** * *
97373484 TCGATGCCATGTCTTAGACATGGTCTTACACTAGCTCTCATAAT-GTGGC
1 T-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATCGAGGC
*
97373533 TGATGCCATGTCCCAGACATGGTCTTACACTGGTTCTCATATC
1 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATC
97373576 ACCCAAATGT
Statistics
Matches: 76, Mismatches: 12, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
47 3 0.04
48 70 0.92
49 3 0.04
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (48 bp):
TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGAGGC
Found at i:97383187 original size:48 final size:47
Alignment explanation
Indices: 97383116--97383378 Score: 175
Period size: 48 Copynumber: 5.6 Consensus size: 47
97383106 TATGTGTGCT
* *
97383116 AGTGTAAGACCATATTTAGAACATGGCATCGACCATGATATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATCG-CCATGATATGAGAGCC
* * * * *
97383164 AGTGTAAGACCATCTTTGGAACATGTCATCAGCAATG-TCGTGAAAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCATC-GCCATGAT-ATGAGAGCC
* * * ***
97383212 ------AGACCATGTCTGGGACATGGCATTGGCCACCTTATGAGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCA-TCGCCATGATATGAGAGCC
* * * *
97383254 AGTGTAAGACCATGTTT-GAGACATGGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGTTTGGA-ACATGGCATCGCCA-TGATATGAGAGCC
* * * ** *
97383302 AGTGTAAGACCATGTCTGGGACATGGCATATGCC-TCGGCATGTGAGCC
1 AGTGTAAGACCATGTTTGGAACATGGCAT-CGCCAT-GATATGAGAGCC
*
97383350 AGTGTAAGACCATGTTTTGAACATGGCAT
1 AGTGTAAGACCATGTTTGGAACATGGCAT
97383379 TGACAATTCA
Statistics
Matches: 162, Mismatches: 38, Indels: 30
0.70 0.17 0.13
Matches are distributed among these distances:
42 28 0.17
43 2 0.01
47 7 0.04
48 121 0.75
49 4 0.02
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTTTGGAACATGGCATCGCCATGATATGAGAGCC
Found at i:97395409 original size:37 final size:37
Alignment explanation
Indices: 97395359--97395437 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
97395349 TTATTACGAA
* *
97395359 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
97395396 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
97395433 GTCTT
1 GTCTT
97395438 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:97395746 original size:31 final size:31
Alignment explanation
Indices: 97395708--97395771 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
97395698 TTATCACATA
97395708 TATACACTTTCACATTCATCACATCAGCCAT
1 TATACACTTTCACATTCATCACATCAGCCAT
*
97395739 TATACACTTTCACATTCATCACATCGGCCAT
1 TATACACTTTCACATTCATCACATCAGCCAT
97395770 TA
1 TA
97395772 GGCCTTATCA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.31, C:0.31, G:0.05, T:0.33
Consensus pattern (31 bp):
TATACACTTTCACATTCATCACATCAGCCAT
Found at i:97395747 original size:78 final size:78
Alignment explanation
Indices: 97395661--97395818 Score: 307
Period size: 78 Copynumber: 2.0 Consensus size: 78
97395651 TTATCACATA
97395661 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
97395726 TCACATCAGCCAT
66 TCACATCAGCCAT
97395739 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
*
97395804 TCACATCGGCCAT
66 TCACATCAGCCAT
97395817 TA
1 TA
97395819 GGCCTTATCA
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
78 79 1.00
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.32
Consensus pattern (78 bp):
TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
TCACATCAGCCAT
Found at i:97395753 original size:47 final size:47
Alignment explanation
Indices: 97395556--97395740 Score: 271
Period size: 47 Copynumber: 3.9 Consensus size: 47
97395546 CCCTTCGGGA
* ** * * * * *
97395556 CTTATCACATTTATGTACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
97395603 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
97395650 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
97395697 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
97395741 TACACTTTCA
Statistics
Matches: 125, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 125 1.00
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:97395792 original size:47 final size:47
Alignment explanation
Indices: 97395739--97395887 Score: 289
Period size: 47 Copynumber: 3.2 Consensus size: 47
97395729 CATCAGCCAT
97395739 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
97395786 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
*
97395833 TATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
97395880 TATACACT
1 TATACACT
97395888 ATCTTGGCTG
Statistics
Matches: 101, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 101 1.00
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
Found at i:97395798 original size:125 final size:125
Alignment explanation
Indices: 97395614--97395857 Score: 488
Period size: 125 Copynumber: 2.0 Consensus size: 125
97395604 CTGTCACATA
97395614 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
97395679 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCAGCCAT
66 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCAGCCAT
97395739 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
97395804 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
97395858 GGCTATTAGG
Statistics
Matches: 119, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
125 119 1.00
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.32
Consensus pattern (125 bp):
TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCAGCCAT
Found at i:97395858 original size:172 final size:172
Alignment explanation
Indices: 97395572--97395887 Score: 560
Period size: 172 Copynumber: 1.8 Consensus size: 172
97395562 ACATTTATGT
* * * *
97395572 ACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACACTTTCACATTCATCACA
1 ACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTTCACATTCATCACA
97395637 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
66 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
97395702 CACATATATACACTTTCACATTCATCACATCAGCCATTATAC
131 CACATATATACACTTTCACATTCATCACATCAGCCATTATAC
* * *
97395744 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
1 ACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTTCACATTCATCACA
*
97395809 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT
66 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
97395874 CACATATATACACT
131 CACATATATACACT
97395888 ATCTTGGCTG
Statistics
Matches: 136, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
172 136 1.00
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (172 bp):
ACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
CACATATATACACTTTCACATTCATCACATCAGCCATTATAC
Found at i:97402521 original size:46 final size:44
Alignment explanation
Indices: 97402417--97402524 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
97402407 TGTCTTTGAC
** * * *
97402417 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
97402461 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
97402507 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
97402525 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:97406306 original size:48 final size:49
Alignment explanation
Indices: 97406241--97406608 Score: 377
Period size: 48 Copynumber: 7.7 Consensus size: 49
97406231 TGCTATGTGT
* * *
97406241 GCTAGTG-AAAACTATGTCTAGGACATGGCATCGGCATTGACATGTGCA
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGATATGTGCA
* * *
97406289 -CTTGTGTAAGACCATGTCTAGGACATGGCATCGGCCACT-ATATGAG-A
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGG-CATTGATATGTGCA
* * * *
97406336 GCCAGTGTAAGACCATGT-TTGGAACATGGCATCAGCAATG-TA-GTGCGA
1 GCTAGTGTAAGACCATGTCTAGG-ACATGGCATCGGCATTGATATGTGC-A
*
97406384 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGACATTGATATGTGC-
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGATATGTGCA
* *
97406432 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTAC-
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGATATGTGCA
* * *
97406480 GCTAGT-TAAGACCATGTCTGGGACATGGCATTGGCATTGATACT-AG-A
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGATA-TGTGCA
* * * *
97406527 GCTAGTGTAAGACCATGTCT-GGAACATGGCATCAGCCTCGACATGTG-A
1 GCTAGTGTAAGACCATGTCTAGG-ACATGGCATCGGCATTGATATGTGCA
* * * *
97406575 GCCAGTGTAAGACCATGTTTAGAACTTGGCATCG
1 GCTAGTGTAAGACCATGTCTAGGACATGGCATCG
97406609 ACAATTCACC
Statistics
Matches: 270, Mismatches: 34, Indels: 32
0.80 0.10 0.10
Matches are distributed among these distances:
46 2 0.01
47 58 0.21
48 197 0.73
49 9 0.03
50 4 0.01
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (49 bp):
GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGATATGTGCA
Found at i:97406584 original size:191 final size:191
Alignment explanation
Indices: 97406234--97406611 Score: 496
Period size: 191 Copynumber: 2.0 Consensus size: 191
97406224 ATTTGGGTGC
* * * *
97406234 TATGTGTGCTAGTGAAAACTATGTCTAGGACATGGCATCGGCATTGACATGTGCACTTGTGTAAG
1 TATGTGCGCTAGTGAAAACCATGTCTAGGACATGGCATCGGCATTGACATGTACACTAGTGTAAG
*
97406299 ACCATGTCTAGGACATGGCATCGGCCACTATATGAGAGCCAGTGTAAGACCATGTTTGGAACATG
66 ACCATGTCTAGGACATGGCATCGGCCACTATATGAGAGCCAGTGTAAGACCATGTCTGGAACATG
* * *
97406364 GCATCAGCAATGTAGTGCGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGACATTGA
131 GCATCAGCAATGTAATGCGAGCCAGTGTAAGACCATGTCTAGAACATGGCATCGACATTGA
* * * *
97406425 TATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTACGCTAGT-TAA
1 TATGTGCGCTAGTG-AAAACCATGTCTAGGACATGGCATCGGCATTGACATGTACACTAGTGTAA
* * * *
97406489 GACCATGTCTGGGACATGGCATTGG-CATTGATACT-AGAGCTAGTGTAAGACCATGTCTGGAAC
65 GACCATGTCTAGGACATGGCATCGGCCACT-ATA-TGAGAGCCAGTGTAAGACCATGTCTGGAAC
* * * *
97406552 ATGGCATCAGC-CTCG-ACATGTGAGCCAGTGTAAGACCATGTTTAGAACTTGGCATCGACA
128 ATGGCATCAGCAAT-GTA-ATGCGAGCCAGTGTAAGACCATGTCTAGAACATGGCATCGACA
97406612 ATTCACCCTC
Statistics
Matches: 162, Mismatches: 20, Indels: 10
0.84 0.10 0.05
Matches are distributed among these distances:
190 5 0.03
191 117 0.72
192 40 0.25
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (191 bp):
TATGTGCGCTAGTGAAAACCATGTCTAGGACATGGCATCGGCATTGACATGTACACTAGTGTAAG
ACCATGTCTAGGACATGGCATCGGCCACTATATGAGAGCCAGTGTAAGACCATGTCTGGAACATG
GCATCAGCAATGTAATGCGAGCCAGTGTAAGACCATGTCTAGAACATGGCATCGACATTGA
Found at i:97414133 original size:48 final size:47
Alignment explanation
Indices: 97414078--97414407 Score: 297
Period size: 48 Copynumber: 6.9 Consensus size: 47
97414068 GTTAATTGCT
* *
97414078 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATGTCGAGGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATC-AGGCC
* * *
97414126 GATGCCATG-TCTCAAACATGGTCTTACACTAGC-CTCGTCTCAATGCC
1 GATGCCATGTTC-CAAACATGGTCTTACACTAGCTCTCATATC-AGGCC
* * * * * *** *
97414173 GATGCCATGTCCCAGACGTGGTCTTACACTGGCTCTCAGAAGGTGGTC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCA-TATCAGGCC
* * * * * *
97414221 TATGCCATGTACCAGACATGGTCTTACACTAGCGCACATATCAATGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATC-AGGCC
* * * * *
97414269 AATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACTA-CATTGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCA-TATCA-GGCC
* *
97414317 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCATGGTC
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCA-GGCC
* * *
97414365 GATGCCATGTTCCAAGCATGGTCTTACACTAGCACACATATCA
1 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCA
97414408 CCCAAATGTC
Statistics
Matches: 231, Mismatches: 43, Indels: 16
0.80 0.15 0.06
Matches are distributed among these distances:
47 42 0.18
48 187 0.81
49 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (47 bp):
GATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCAGGCC
Found at i:97414297 original size:96 final size:94
Alignment explanation
Indices: 97414078--97414394 Score: 334
Period size: 96 Copynumber: 3.3 Consensus size: 94
97414068 GTTAATTGCT
* * * * ***
97414078 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATGTCGA-GGCCGATGCCATGTCTCAAA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAAC-ATGGCCGATGCCATGTC-CAAA
* *
97414142 CATGGTCTTACACTAGCCTCGTCTCAATGCC
64 CATGGTCTTACACTAGCCTCATATCAATGCC
* * ** * * *
97414173 GATGCCATGTCCCAGACGTGGTCTTACACTGGCTCTCAGAAGGTGGTCTATGCCATGTACCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAACATGGCCGATGCCATGT-CCAAAC
*
97414238 ATGGTCTTACACTAGCGCACATATCAATGCC
65 ATGGTCTTACACTAGC-CTCATATCAATGCC
* * *
97414269 AATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACTACATTGCCGATGCCATGTTCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAACATGGCCGATGCCATG-TCCAAAC
* *
97414334 ATGGTCTTACACTGGCTCTCATATC-ATGGTC
65 ATGGTCTTACACTAGC-CTCATATCAAT-GCC
*
97414365 GATGCCATGTTCCA-AGCATGGTCTTACACT
1 GATGCCATGTCCCAGA-CATGGTCTTACACT
97414395 AGCACACATA
Statistics
Matches: 184, Mismatches: 32, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
95 68 0.37
96 115 0.62
97 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (94 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAACATGGCCGATGCCATGTCCAAACA
TGGTCTTACACTAGCCTCATATCAATGCC
Found at i:97414374 original size:144 final size:142
Alignment explanation
Indices: 97414078--97414407 Score: 428
Period size: 144 Copynumber: 2.3 Consensus size: 142
97414068 GTTAATTGCT
* * * * *
97414078 GATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATGTCGAGGCCGATGCCATGTCTCAAAC
1 GATGCCATGTTCC-AACATGGTCTTACACTAGCACACATATCAAGGCCAATGCCATGTCCCAAAC
* * *
97414143 ATGGTCTTACACTAGCCTCGTCTCAATGCCGATGCCATGTCCCAGACGTGGTCTTACACTGGCTC
65 ATGGTCTTACACTAGCCTCGACTCAATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTC
**
97414208 TCAGAAGGTGGTC
130 TCAGAACATGGTC
* * * * *
97414221 TATGCCATGTACCAGACATGGTCTTACACTAGCGCACATATCAATGCCAATGCCATGTCCCAGAC
1 GATGCCATGTTCCA-ACATGGTCTTACACTAGCACACATATCAAGGCCAATGCCATGTCCCAAAC
* * *
97414286 ATGGTCTTACACTGGCTCTC-ACTACATTGCCGATGCCATGTTCCAAACATGGTCTTACACTGGC
65 ATGGTCTTACACTAGC-CTCGACT-CAATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGC
* *
97414350 TCTCATATCATGGTC
128 TCTCAGAACATGGTC
97414365 GATGCCATGTTCCAAGCATGGTCTTACACTAGCACACATATCA
1 GATGCCATGTTCCAA-CATGGTCTTACACTAGCACACATATCA
97414408 CCCAAATGTC
Statistics
Matches: 161, Mismatches: 22, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
142 1 0.01
143 72 0.45
144 88 0.55
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (142 bp):
GATGCCATGTTCCAACATGGTCTTACACTAGCACACATATCAAGGCCAATGCCATGTCCCAAACA
TGGTCTTACACTAGCCTCGACTCAATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCT
CAGAACATGGTC
Found at i:97423926 original size:47 final size:47
Alignment explanation
Indices: 97423868--97424355 Score: 870
Period size: 47 Copynumber: 10.4 Consensus size: 47
97423858 CAGCCAAGAC
*
97423868 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
97423915 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
97423962 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
97424009 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
97424056 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
97424103 AGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
97424149 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
97424196 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
97424243 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
97424290 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
97424337 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
97424356 TCCCGAAGGG
Statistics
Matches: 427, Mismatches: 13, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
46 46 0.11
47 381 0.89
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:97424278 original size:234 final size:235
Alignment explanation
Indices: 97423868--97424355 Score: 879
Period size: 234 Copynumber: 2.1 Consensus size: 235
97423858 CAGCCAAGAC
97423868 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
97423933 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
66 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
97423998 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
131 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * * *
97424063 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
196 ATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAA
97424103 AGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
97424167 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
66 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
97424232 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
131 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * *
97424297 ATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
196 ATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAA
* *
97424337 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
97424356 TCCCGAAGGG
Statistics
Matches: 243, Mismatches: 10, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
234 217 0.89
235 26 0.11
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (235 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
ATATGTGACAAGGCCGAATGGCCAACGTGATGAATGTGAA
Found at i:97424530 original size:37 final size:37
Alignment explanation
Indices: 97424474--97424552 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
97424464 CCGAGCTCTA
* *
97424474 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
97424511 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
97424548 AAGAC
1 AAGAC
97424553 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:97426432 original size:40 final size:40
Alignment explanation
Indices: 97426367--97426496 Score: 201
Period size: 40 Copynumber: 3.3 Consensus size: 40
97426357 GAGAATTGAG
97426367 AGTGATATATCC-GGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
97426406 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * * *
97426446 AGTGATGTATCCGGGCTGAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
97426486 AGT-AGTATATC
1 AGTGA-TATATC
97426497 TGTGCTAAAC
Statistics
Matches: 84, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
39 13 0.15
40 71 0.85
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:97430229 original size:48 final size:47
Alignment explanation
Indices: 97430050--97430257 Score: 317
Period size: 47 Copynumber: 4.4 Consensus size: 47
97430040 CAGCCAAGAC
*
97430050 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
97430097 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
97430144 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
97430191 AGTGTATATTATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATA-TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
97430239 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
97430258 TCCCGAAGGG
Statistics
Matches: 148, Mismatches: 12, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
47 109 0.74
48 39 0.26
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:97430443 original size:36 final size:37
Alignment explanation
Indices: 97430375--97430452 Score: 115
Period size: 36 Copynumber: 2.1 Consensus size: 37
97430365 CCGAGCTCTA
* *
97430375 AAGACCCGATGACTACGTGTGGGAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGGAATTATGTCCGGGT
97430412 AAGACCCGATAACT-CGTGT-GGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGGA-ATTATGTCCGGGT
97430448 AAGAC
1 AAGAC
97430453 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
35 3 0.08
36 22 0.58
37 13 0.34
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGGAATTATGTCCGGGT
Found at i:97434546 original size:27 final size:27
Alignment explanation
Indices: 97434515--97434692 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 27
97434505 TAAATTGTAC
97434515 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * ** *
97434542 TGCACTAAGGGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
97434568 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
97434596 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
97434624 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * * *
97434651 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
97434678 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
97434693 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 27, Indels: 6
0.79 0.18 0.04
Matches are distributed among these distances:
27 99 0.82
28 22 0.18
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:97434656 original size:82 final size:81
Alignment explanation
Indices: 97434516--97434671 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
97434506 AAATTGTACA
* * * *
97434516 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGGGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATCTGACTATGTAGCACTAAGGGTGCGAAATGAATACGATGCACTAAATGT
97434581 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
97434597 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAAT
1 GCACTAAGTGTGCGA-TCTGACTATGTAGCACTAAGGGTGCGAAATGAATACGAT-GCACTAAAT
*
97434661 GTGCGAGTTGA
64 GTGCGAATTGA
97434672 TTATATAGCA
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 16 0.25
82 48 0.75
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGATCTGACTATGTAGCACTAAGGGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:97434683 original size:82 final size:81
Alignment explanation
Indices: 97434512--97434692 Score: 202
Period size: 82 Copynumber: 2.2 Consensus size: 81
97434502 GATTAAATTG
* * *
97434512 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGGGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATCTGACTATGTAGCACTAAGGGTGCGAAATGAATACGATGCACTAA
*
97434577 GTGTGCGAATTGACCA
66 ATGTGCGAATTGACCA
* * * ** *
97434593 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGA-TCTGACTATGTAGCACTAAGGGTGCGAAATGAATACGAT-GCACT
* **
97434657 AAATGTGCGAGTTGATTA
64 AAATGTGCGAATTGACCA
* *
97434675 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
97434693 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
81 18 0.22
82 63 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATCTGACTATGTAGCACTAAGGGTGCGAAATGAATACGATGCACTAA
ATGTGCGAATTGACCA
Found at i:97442578 original size:27 final size:27
Alignment explanation
Indices: 97442547--97442723 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 27
97442537 TAAATTGTAC
97442547 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
97442574 TGCACTAAG-GTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
97442599 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
97442627 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
97442655 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * * *
97442682 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
97442709 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
97442724 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
26 21 0.17
27 78 0.64
28 22 0.18
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:97442668 original size:55 final size:54
Alignment explanation
Indices: 97442547--97442723 Score: 205
Period size: 55 Copynumber: 3.3 Consensus size: 54
97442537 TAAATTGTAC
* **
97442547 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAG-GTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGT
* * * *
97442599 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTGACTATGT
1 A-GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGT-TGAATATGT
* * * * *
97442655 AGCACTAAGTGTGCGATTTGATTACGTGGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGT
*
97442709 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
97442724 GGCTCAATAT
Statistics
Matches: 105, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
52 1 0.01
53 31 0.30
54 27 0.26
55 45 0.43
56 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGT
Found at i:97442714 original size:82 final size:80
Alignment explanation
Indices: 97442544--97442723 Score: 200
Period size: 82 Copynumber: 2.2 Consensus size: 80
97442534 GATTAAATTG
* * * *
97442544 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGGTGCGAAATGAATATGATGCACTAAG
1 TACAGCACTAAGTGTGCGATCTGACTATGTAGCACTAAGGTGCGAAATGAATACGATGCACTAAA
97442609 TGTGCGAATTGACCA
66 TGTGCGAATTGACCA
* * ** *
97442624 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGA-TCTGACTATGTAGCACTAAG-GTGCGAAATGAATACGAT-GCACT
* **
97442688 AAATGTGCGAGTTGATTA
63 AAATGTGCGAATTGACCA
* *
97442706 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
97442724 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
80 17 0.21
81 19 0.23
82 45 0.56
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (80 bp):
TACAGCACTAAGTGTGCGATCTGACTATGTAGCACTAAGGTGCGAAATGAATACGATGCACTAAA
TGTGCGAATTGACCA
Done.