Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 291 of 349
Found at i:97445555 original size:48 final size:48
Alignment explanation
Indices: 97445174--97445584 Score: 404
Period size: 48 Copynumber: 8.6 Consensus size: 48
97445164 CAAGTTCTAA
* * * * * * *
97445174 ACATGGTCTTACATTGGCTAACATCTCGAGGCCGATGCCATGTCCTAG
1 ACATGGTCTTACACTAGCTCACATATCAATGCCGATGCCATGTCCCAG
* * * * *
97445222 ACATGGTCTTACACTAGCTCTCGTCTCAACGCCGATGCCATGTCCAAG
1 ACATGGTCTTACACTAGCTCACATATCAATGCCGATGCCATGTCCCAG
* * * *
97445270 ACATGGTCTTACACTGGCTCCCATA--AGGTGACCGATGCCATGTCCTAG
1 ACATGGTCTTACACTAGCTCACATATCA-ATG-CCGATGCCATGTCCCAG
* * * *
97445318 ACATGGTCTTACACTGGCTCTCATA--AGGTGGCGATGCCATGTCCCAG
1 ACATGGTCTTACACTAGCTCACATATCA-ATGCCGATGCCATGTCCCAG
* * *
97445365 ACATGGTCTTACACTAGCGCACATATCAATGTCGATGCCATGTCCCAA
1 ACATGGTCTTACACTAGCTCACATATCAATGCCGATGCCATGTCCCAG
** * * * * *
97445413 ACATGGTCTTGTACTGGCTCGCACTA-CATTGCCGATGCCATGTTCCAA
1 ACATGGTCTTACACTAGCTCACA-TATCAATGCCGATGCCATGTCCCAG
*
97445461 ACATGGTCTTACACTAGCTCTA-ATATC-ATGGCAGATGCCATGTCCCAG
1 ACATGGTCTTACACTAGCTC-ACATATCAAT-GCCGATGCCATGTCCCAG
* *
97445509 ACATGGTCTTACACTAGCGCACATATCAATGCCGATGCCATATCCCAG
1 ACATGGTCTTACACTAGCTCACATATCAATGCCGATGCCATGTCCCAG
* *
97445557 ACATGGTCTTTCACTAGCACACATATCA
1 ACATGGTCTTACACTAGCTCACATATCA
97445585 CCCAAATATC
Statistics
Matches: 308, Mismatches: 45, Indels: 20
0.83 0.12 0.05
Matches are distributed among these distances:
46 1 0.00
47 42 0.14
48 260 0.84
49 5 0.02
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (48 bp):
ACATGGTCTTACACTAGCTCACATATCAATGCCGATGCCATGTCCCAG
Found at i:97452343 original size:16 final size:16
Alignment explanation
Indices: 97452324--97452354 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
97452314 ATTGATTTTG
*
97452324 TACATGACATTCTGCA
1 TACATGACATACTGCA
97452340 TACATGACATACTGC
1 TACATGACATACTGC
97452355 TTGGGATTGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (16 bp):
TACATGACATACTGCA
Found at i:97452652 original size:32 final size:32
Alignment explanation
Indices: 97452587--97452658 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 32
97452577 TATTGAAATA
* * * *
97452587 GGCTAGGCCCAACTGATACTGGTTCTGATATG
1 GGCTAGGCCAAACTGATACTGATTCTAAGATG
* *
97452619 GGCTTGGCCAAACTGATATTGATTCTAAGATG
1 GGCTAGGCCAAACTGATACTGATTCTAAGATG
97452651 GGCTAGGC
1 GGCTAGGC
97452659 GCAATTGAGA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (32 bp):
GGCTAGGCCAAACTGATACTGATTCTAAGATG
Found at i:97454938 original size:15 final size:17
Alignment explanation
Indices: 97454920--97454951 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
97454910 TAGCATAATT
97454920 TACCAAA-TCA-ATTCA
1 TACCAAACTCACATTCA
97454935 TACCAAACTCACATTCA
1 TACCAAACTCACATTCA
97454952 CAAGTATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (17 bp):
TACCAAACTCACATTCA
Found at i:97456144 original size:81 final size:81
Alignment explanation
Indices: 97456005--97456217 Score: 284
Period size: 81 Copynumber: 2.6 Consensus size: 81
97455995 GAATACTTTA
* *** * * * *
97456005 ATTTACCAAATTACTGAAATACCCTCAATTTACAGAATTATTGTTTTACCCTTGATTTACAAAAT
1 ATTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAAAAT
97456070 TACTATTTTACCCTCG
66 TACTATTTTACCCTCG
*
97456086 ATTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTAT-ATTTACAGAA
1 ATTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACTATTTTACCCT-TGATTTACAAAA
*
97456150 TTACTGTTTTACCCTCG
65 TTACTATTTTACCCTCG
* * * *
97456167 ATTTATAGAATTACTGTTTTACCCTCGATTTATAAAATTACCATTTTACCC
1 ATTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACTATTTTACCC
97456218 ATAGGGTGTT
Statistics
Matches: 117, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
81 116 0.99
82 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.07, T:0.42
Consensus pattern (81 bp):
ATTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAAAAT
TACTATTTTACCCTCG
Found at i:97456213 original size:27 final size:27
Alignment explanation
Indices: 97456024--97456217 Score: 235
Period size: 27 Copynumber: 7.2 Consensus size: 27
97456014 ATTACTGAAA
* * * *
97456024 TACCCTCAATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
*
97456051 TACCCTTGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
*
97456078 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
97456105 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
** * *
97456132 TACCCTATATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
97456159 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
97456186 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
97456213 TACCC
1 TACCC
97456218 ATAGGGTGTT
Statistics
Matches: 147, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 147 1.00
ACGTcount: A:0.30, C:0.21, G:0.07, T:0.43
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:97456510 original size:27 final size:28
Alignment explanation
Indices: 97456452--97456513 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 28
97456442 CCTCGCTGCA
* *
97456452 ATCTGGTAGCCTCGCAACATATATCTGT
1 ATCTGGTGGCCTAGCAACATATATCTGT
*
97456480 -TCTGGTGGCCTAGCCACA-ATATCTGT
1 ATCTGGTGGCCTAGCAACATATATCTGT
97456506 ATCTGGTG
1 ATCTGGTG
97456514 ACTTCGTTAC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
26 8 0.27
27 22 0.73
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.32
Consensus pattern (28 bp):
ATCTGGTGGCCTAGCAACATATATCTGT
Found at i:97456685 original size:31 final size:31
Alignment explanation
Indices: 97456650--97456759 Score: 91
Period size: 31 Copynumber: 3.5 Consensus size: 31
97456640 TTGCATTCAT
97456650 ATTCTGATTTTGATTCTATTACCTGATACTG
1 ATTCTGATTTTGATTCTATTACCTGATACTG
* * * * * *
97456681 ATTCTGATTCTAATTCTGTCACCTAATTCTG
1 ATTCTGATTTTGATTCTATTACCTGATACTG
* * *
97456712 ATTTTGTTTTTTATTCTGATT--CTG-TCACTTG
1 ATTCTGATTTTGATTCT-ATTACCTGAT-AC-TG
97456743 ATTCTGATTTTGATTCT
1 ATTCTGATTTTGATTCT
97456760 GATTCTCATT
Statistics
Matches: 59, Mismatches: 17, Indels: 6
0.72 0.21 0.07
Matches are distributed among these distances:
29 1 0.02
30 3 0.05
31 54 0.92
32 1 0.02
ACGTcount: A:0.19, C:0.16, G:0.12, T:0.53
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTATTACCTGATACTG
Found at i:97456689 original size:6 final size:6
Alignment explanation
Indices: 97456650--97456777 Score: 64
Period size: 6 Copynumber: 20.8 Consensus size: 6
97456640 TTGCATTCAT
* * *
97456650 ATTCTG ATTTTG ATTCT- ATTACCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * * * *
97456699 -TCACCTA ATTCTG ATTTTG TTTTTT ATTCTG ATTCTG -TCACTTG ATTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG
* * *
97456749 ATTTTG ATTCTG ATTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
97456778 AGTTCTGGTA
Statistics
Matches: 89, Mismatches: 24, Indels: 18
0.68 0.18 0.14
Matches are distributed among these distances:
5 5 0.06
6 73 0.82
7 7 0.08
8 4 0.04
ACGTcount: A:0.19, C:0.16, G:0.12, T:0.53
Consensus pattern (6 bp):
ATTCTG
Found at i:97456713 original size:37 final size:37
Alignment explanation
Indices: 97456679--97456765 Score: 120
Period size: 37 Copynumber: 2.4 Consensus size: 37
97456669 TACCTGATAC
97456679 TGATTCTGATTCTAATTCTGTCACCTAATTCTGATTT
1 TGATTCTGATTCTAATTCTGTCACCTAATTCTGATTT
* * * * * *
97456716 TGTTTTTTATTCTGATTCTGTCACTTGATTCTGATTT
1 TGATTCTGATTCTAATTCTGTCACCTAATTCTGATTT
97456753 TGATTCTGATTCT
1 TGATTCTGATTCT
97456766 CATTTTGATT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.17, C:0.16, G:0.13, T:0.54
Consensus pattern (37 bp):
TGATTCTGATTCTAATTCTGTCACCTAATTCTGATTT
Found at i:97456748 original size:19 final size:19
Alignment explanation
Indices: 97456685--97456751 Score: 64
Period size: 19 Copynumber: 3.6 Consensus size: 19
97456675 ATACTGATTC
* *
97456685 TGATTCTAATTCTGTCACC
1 TGATTCTGATTCTGTCACT
* * **
97456704 TAATTCTGATTTTGT-TTT
1 TGATTCTGATTCTGTCACT
*
97456722 TTATTCTGATTCTGTCACT
1 TGATTCTGATTCTGTCACT
97456741 TGATTCTGATT
1 TGATTCTGATT
97456752 TTGATTCTGA
Statistics
Matches: 36, Mismatches: 11, Indels: 2
0.73 0.22 0.04
Matches are distributed among these distances:
18 13 0.36
19 23 0.64
ACGTcount: A:0.18, C:0.16, G:0.12, T:0.54
Consensus pattern (19 bp):
TGATTCTGATTCTGTCACT
Found at i:97458785 original size:27 final size:27
Alignment explanation
Indices: 97458772--97458965 Score: 235
Period size: 27 Copynumber: 7.2 Consensus size: 27
97458762 ATTACTGAAA
* *
97458772 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
**
97458799 TACCCTTTATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
*
97458826 TACCCTCGGTTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
97458853 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
97458880 TACCCTCGATTTACAAAATTATTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* * * **
97458907 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
97458934 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
97458961 TACCC
1 TACCC
97458966 CTAGGGTGTT
Statistics
Matches: 143, Mismatches: 24, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 143 1.00
ACGTcount: A:0.30, C:0.22, G:0.06, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:97458892 original size:81 final size:81
Alignment explanation
Indices: 97458772--97458965 Score: 262
Period size: 81 Copynumber: 2.4 Consensus size: 81
97458762 ATTACTGAAA
* ** ** **
97458772 TACCCTCGATTTACAGAATTACTGTTTTACCCTTTATTTACAAAATTACTATTTTACCCTCGGTT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACTATTTTACCCTCAATT
*
97458837 TACAAAATTACTATTT
66 TACAAAATTACCATTT
* *
97458853 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTATTGTTTTACCCTCAATT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACTATTTTACCCTCAATT
* * *
97458918 TATAGAATTACCGTTT
66 TACAAAATTACCATTT
*
97458934 TACCCTCGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTATAGAATTACCATTTTACCC
97458966 CTAGGGTGTT
Statistics
Matches: 99, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 99 1.00
ACGTcount: A:0.30, C:0.22, G:0.06, T:0.42
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACTATTTTACCCTCAATT
TACAAAATTACCATTT
Found at i:97459508 original size:6 final size:6
Alignment explanation
Indices: 97459469--97459638 Score: 96
Period size: 6 Copynumber: 27.7 Consensus size: 6
97459459 TTGCATTCAT
* * *
97459469 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * * * *
97459518 -TCACCTA ATTCTG ATTCTG TTTCTG ATTCTA ATTCTG -TCACCTA ATTCTA
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
* * *
97459568 ATTCTG TTTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG ATTCTA
1 ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
* * *
97459617 ATTCTC ATTTTG ATTCTA ATTC
1 ATTCTG ATTCTG ATTCTG ATTC
97459639 CCATCTGGTA
Statistics
Matches: 124, Mismatches: 28, Indels: 24
0.70 0.16 0.14
Matches are distributed among these distances:
5 5 0.04
6 105 0.85
7 10 0.08
8 4 0.03
ACGTcount: A:0.20, C:0.20, G:0.11, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:97459532 original size:37 final size:37
Alignment explanation
Indices: 97459491--97459621 Score: 199
Period size: 37 Copynumber: 3.5 Consensus size: 37
97459481 ATTCTGTTAC
*
97459491 CTGATACTGATTCTGATTCTAATTCTGTCACCTAATT
1 CTGATTCTGATTCTGATTCTAATTCTGTCACCTAATT
*
97459528 CTGATTCTGTTTCTGATTCTAATTCTGTCACCTAATT
1 CTGATTCTGATTCTGATTCTAATTCTGTCACCTAATT
* * * *
97459565 CTAATTCTGTTTCTGATTCTGATTCTGTCACCTGATT
1 CTGATTCTGATTCTGATTCTAATTCTGTCACCTAATT
*
97459602 CTGATTCTGATTCTAATTCT
1 CTGATTCTGATTCTGATTCT
97459622 CATTTTGATT
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 86 1.00
ACGTcount: A:0.20, C:0.21, G:0.11, T:0.47
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTAATTCTGTCACCTAATT
Found at i:97459566 original size:31 final size:31
Alignment explanation
Indices: 97459469--97459621 Score: 126
Period size: 31 Copynumber: 4.5 Consensus size: 31
97459459 TTGCATTCAT
* * * * *
97459469 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTAATTCTGTCACCTAATTCTG
97459500 ATTCTGATTCTAATTCTGTCACCTAATTCTG
1 ATTCTGATTCTAATTCTGTCACCTAATTCTG
97459531 ATTCTGTTTCTGATTCTAATTCTGTCACCTAATTCTAATTCTG
1 A------TTCTGATTCTAATTCTGTCA-C-----CTAATTCTG
* * *
97459574 TTTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTAATTCTGTCACCTAATTCTG
97459605 ATTCTGATTCTAATTCT
1 ATTCTGATTCTAATTCT
97459622 CATTTTGATT
Statistics
Matches: 100, Mismatches: 10, Indels: 24
0.75 0.07 0.18
Matches are distributed among these distances:
31 50 0.50
36 1 0.01
37 39 0.39
38 1 0.01
43 9 0.09
ACGTcount: A:0.20, C:0.20, G:0.12, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTAATTCTGTCACCTAATTCTG
Found at i:97461205 original size:39 final size:40
Alignment explanation
Indices: 97461054--97461223 Score: 200
Period size: 40 Copynumber: 4.3 Consensus size: 40
97461044 GGACTAAGAT
* * * * *
97461054 CCGAAGGCATTTGTGCGAGATAC-AAATTCCAGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGTTACTAAA-TCCGGGTTATGTC
* * * *
97461094 CCGAAGGCCTTGGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTATGTC
*
97461134 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTATGTC
* * *
97461174 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTATGTC
97461213 CCGAAGGCATT
1 CCGAAGGCATT
97461224 TGAACGAGGA
Statistics
Matches: 116, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 35 0.30
40 78 0.67
41 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTATGTC
Found at i:97461243 original size:79 final size:79
Alignment explanation
Indices: 97461093--97461258 Score: 174
Period size: 79 Copynumber: 2.1 Consensus size: 79
97461083 CAGGTTAAGC
* * * ** * *
97461093 CCCGAAGGCCTTGGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATT
1 CCCGAAGGCATTGGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACT
**
97461158 AAATCCGGGTTATGT
66 AAATCC-GGTTAAAT
* * * *
97461173 CCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCCGAAGGCATTGGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-C
*
97461236 TATATCCGGTTAAAT
65 TAAATCCGGTTAAAT
97461251 CCCGAAGG
1 CCCGAAGG
97461259 TACGTGATTT
Statistics
Matches: 71, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.21
79 45 0.63
80 11 0.15
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCCGAAGGCATTGGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACT
AAATCCGGTTAAAT
Found at i:97474296 original size:30 final size:30
Alignment explanation
Indices: 97474262--97474318 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
97474252 GGGACACGGG
97474262 CGTGTGTAGTACACAGCCTGACCACACAGA
1 CGTGTGTAGTACACAGCCTGACCACACAGA
97474292 CGTGTGTAGTACACAGCCTGACCACAC
1 CGTGTGTAGTACACAGCCTGACCACAC
97474319 GGGCTTGTCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.32, G:0.23, T:0.18
Consensus pattern (30 bp):
CGTGTGTAGTACACAGCCTGACCACACAGA
Found at i:97480933 original size:9 final size:9
Alignment explanation
Indices: 97480919--97480948 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
97480909 AAAGTTAAGG
97480919 ATATATATT
1 ATATATATT
97480928 ATATATATT
1 ATATATATT
97480937 ATATTATATT
1 ATA-TATATT
97480947 AT
1 AT
97480949 TAAACAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.60
10 8 0.40
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (9 bp):
ATATATATT
Found at i:97481964 original size:22 final size:22
Alignment explanation
Indices: 97481910--97482025 Score: 126
Period size: 22 Copynumber: 5.1 Consensus size: 22
97481900 TCTTTGATAA
*
97481910 TTAGCACGTTAGTGCTCTCCAT-T
1 TTAGCACATTAGTGCTCT-C-TGT
97481933 TACTAGCACATTAGTGCTCTCTGT
1 T--TAGCACATTAGTGCTCTCTGT
* *
97481957 TTAGCACATTTGTGCTCTCTTT
1 TTAGCACATTAGTGCTCTCTGT
*
97481979 TTAGCACATTTGTGCTCTCTGT
1 TTAGCACATTAGTGCTCTCTGT
* * *
97482001 ATAGCACTTTAGTGATCTCTGT
1 TTAGCACATTAGTGCTCTCTGT
97482023 TTA
1 TTA
97482026 ATACTGCATA
Statistics
Matches: 81, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
22 60 0.74
23 2 0.02
24 3 0.04
25 16 0.20
ACGTcount: A:0.18, C:0.22, G:0.16, T:0.43
Consensus pattern (22 bp):
TTAGCACATTAGTGCTCTCTGT
Found at i:97487315 original size:29 final size:29
Alignment explanation
Indices: 97487282--97487355 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
97487272 GTTGTGAGAT
* *
97487282 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
97487311 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
97487340 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
97487356 TGGTTGATGA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:97495412 original size:29 final size:29
Alignment explanation
Indices: 97495379--97495452 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
97495369 GTTGTGAGAT
* *
97495379 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
97495408 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
97495437 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
97495453 TGGTTGATGA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:97502317 original size:47 final size:47
Alignment explanation
Indices: 97502184--97502544 Score: 532
Period size: 47 Copynumber: 7.6 Consensus size: 47
97502174 CCCTTCGGGA
* * *
97502184 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
97502231 CTTATCAC--ATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
97502276 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
97502323 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
97502370 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
97502419 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
97502466 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
97502513 CTTATCACATATATATACACTTTCACATTCAT
1 CTTATCAC--ATATATACACTTTCACATTCAT
97502545 TCAAATATAC
Statistics
Matches: 291, Mismatches: 15, Indels: 14
0.91 0.05 0.04
Matches are distributed among these distances:
45 41 0.14
46 1 0.00
47 183 0.63
49 65 0.22
50 1 0.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:97502442 original size:96 final size:94
Alignment explanation
Indices: 97502184--97502544 Score: 532
Period size: 96 Copynumber: 3.8 Consensus size: 94
97502174 CCCTTCGGGA
* * *
97502184 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCAC--ATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
97502247 TTTCACATTCATCACATTGGCCATTCGGC
66 TTTCACATTCATCACATTGGCCATTCGGC
* * * *
97502276 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACA
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
97502340 -TGTTCACATTCATCACATTGGCCATTCGGC
65 CT-TTCACATTCATCACATTGGCCATTCGGC
97502370 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
* * *
97502435 ACTTTCACATTCATCACATCGGCTATTAGGC
64 ACTTTCACATTCATCACATTGGCCATTCGGC
* *
97502466 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATAC
97502531 ACTTTCACATTCAT
64 ACTTTCACATTCAT
97502545 TCAAATATAC
Statistics
Matches: 244, Mismatches: 15, Indels: 16
0.89 0.05 0.06
Matches are distributed among these distances:
91 1 0.00
92 48 0.20
93 1 0.00
94 86 0.35
96 106 0.43
97 2 0.01
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.34
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATTGGCCATTCGGC
Found at i:97502442 original size:143 final size:143
Alignment explanation
Indices: 97502184--97502544 Score: 536
Period size: 143 Copynumber: 2.6 Consensus size: 143
97502174 CCCTTCGGGA
** * * *
97502184 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCAC----ATATAC
1 CTTATCACACATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
* *
97502245 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACA
* *
97502310 TTGGCCATTCGGC
131 TCGGCCATTAGGC
97502323 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATA
1 CTTATCACACATACACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATA
97502387 CACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACT-TTCACATTCATCA
65 CACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA-TGTTCACATTCATCA
*
97502451 CATCGGCTATTAGGC
129 CATCGGCCATTAGGC
* * * *
97502466 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACACATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
97502531 ACTTTCACATTCAT
66 ACTTTCACATTCAT
97502545 TCAAATATAC
Statistics
Matches: 201, Mismatches: 14, Indels: 10
0.89 0.06 0.04
Matches are distributed among these distances:
138 1 0.00
139 48 0.24
143 150 0.75
144 2 0.01
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.34
Consensus pattern (143 bp):
CTTATCACACATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:97510817 original size:48 final size:48
Alignment explanation
Indices: 97510762--97510856 Score: 145
Period size: 48 Copynumber: 2.0 Consensus size: 48
97510752 ACGATGTCTC
* **
97510762 ATATCGATGCCAATGCTATATCCCAGATGTGCTCTTACATGGGATCAA
1 ATATCGATGCCAATGCCATATCCCAGACATGCTCTTACATGGGATCAA
* *
97510810 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
1 ATATCGATGCCAATGCCATATCCCAGACATGCTCTTACATGGGATCA
97510857 CACATAACCC
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.27
Consensus pattern (48 bp):
ATATCGATGCCAATGCCATATCCCAGACATGCTCTTACATGGGATCAA
Found at i:97531061 original size:27 final size:27
Alignment explanation
Indices: 97531013--97531171 Score: 182
Period size: 27 Copynumber: 5.9 Consensus size: 27
97531003 GCGAGGCTGC
* * * *
97531013 CAGATATTGTGACAAAGTCACCAAATA
1 CAGATATTGTGGCAGAGCCACCAGATA
97531040 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
97531066 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * *
97531093 CATATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
97531120 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
97531147 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
97531172 GACGCTTCCT
Statistics
Matches: 114, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
26 10 0.09
27 100 0.88
28 4 0.04
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:97531106 original size:54 final size:54
Alignment explanation
Indices: 97531013--97531171 Score: 223
Period size: 54 Copynumber: 3.0 Consensus size: 54
97531003 GCGAGGCTGC
* * * * * *
97531013 CAGATAT-TGTGACAAAGTCACCAAATACAGAT-ATTGTGGCAGAGCCACCAGAA
1 CAGATATATGTGGCAGAGCCACCAGAT-CAGATAATCGTGGCATAGCCACCAGAA
*
97531066 CAGATATATGTGGCAGAGCCACCAGATCATATAATCGTGGCATAGCCACCAGAA
1 CAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCCACCAGAA
*
97531120 CAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCCACCAG
97531172 GACGCTTCCT
Statistics
Matches: 95, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
53 11 0.12
54 84 0.88
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.19
Consensus pattern (54 bp):
CAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCCACCAGAA
Found at i:97532815 original size:26 final size:26
Alignment explanation
Indices: 97532784--97532891 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
97532774 TGAAATGCCC
*
97532784 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
97532810 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
97532836 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
97532862 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
97532888 ATCA
1 ATCA
97532892 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:97537973 original size:27 final size:27
Alignment explanation
Indices: 97537925--97538083 Score: 175
Period size: 27 Copynumber: 5.9 Consensus size: 27
97537915 GTGAGGCTGC
* *
97537925 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
97537952 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
97537978 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
** *
97538005 CAGATAATCATGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
97538032 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
97538059 CAGATAATTGTGGCATAGCTACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
97538084 GACGTTTCCT
Statistics
Matches: 114, Mismatches: 10, Indels: 16
0.81 0.07 0.11
Matches are distributed among these distances:
26 10 0.09
27 99 0.87
28 5 0.04
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:97538073 original size:54 final size:54
Alignment explanation
Indices: 97537943--97538083 Score: 230
Period size: 54 Copynumber: 2.6 Consensus size: 54
97537933 GTGACGAAGT
*
97537943 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
**
97537997 CACCAGATCAGATAATCATGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
97538051 CACCAGATCAGATAATTGTGGCATAGCTACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
97538084 GACGTTTCCT
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 5 0.06
54 75 0.94
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:97539732 original size:26 final size:26
Alignment explanation
Indices: 97539703--97539810 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
97539693 TGAAATGCCC
*
97539703 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
97539729 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
97539755 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
97539781 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
97539807 ATCA
1 ATCA
97539811 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:97544913 original size:13 final size:13
Alignment explanation
Indices: 97544895--97544919 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97544885 TTTAATTGAA
97544895 AATTTAATAAATT
1 AATTTAATAAATT
97544908 AATTTAATAAAT
1 AATTTAATAAAT
97544920 AATGTTTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
AATTTAATAAATT
Found at i:97548679 original size:21 final size:20
Alignment explanation
Indices: 97548652--97548703 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 20
97548642 AGGTCTAAAA
*
97548652 TGTAAACTTTATAAAATATATG
1 TGTAAAC-TAATAAAATA-ATG
97548674 -GTAAACTAATAAAATAATG
1 TGTAAACTAATAAAATAATG
*
97548693 TGTAAAATAAT
1 TGTAAACTAAT
97548704 TTTTAGATGT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 3 0.11
20 18 0.67
21 6 0.22
ACGTcount: A:0.52, C:0.04, G:0.10, T:0.35
Consensus pattern (20 bp):
TGTAAACTAATAAAATAATG
Found at i:97549168 original size:4 final size:4
Alignment explanation
Indices: 97549161--97549224 Score: 128
Period size: 4 Copynumber: 16.0 Consensus size: 4
97549151 TAGATAATTA
97549161 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
97549209 ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT
97549225 TCTAGTGTTG
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 60 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:97554937 original size:23 final size:24
Alignment explanation
Indices: 97554885--97554941 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 24
97554875 AAATGATGAG
*
97554885 TATTTGATATATATATATTTTTTAA
1 TATTTTAT-TATATATATTTTTTAA
97554910 -A--TTATTATATATA-TTTTTAA
1 TATTTTATTATATATATTTTTTAA
97554930 TATTTTATTATA
1 TATTTTATTATA
97554942 CTTATATAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
20 7 0.25
21 9 0.32
22 3 0.11
23 8 0.29
24 1 0.04
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (24 bp):
TATTTTATTATATATATTTTTTAA
Found at i:97557054 original size:28 final size:29
Alignment explanation
Indices: 97556999--97557054 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
97556989 CTACAGGGGT
*
97556999 TTTCACATGGCCAAGCACACGCCCGTGTC
1 TTTCACACGGCCAAGCACACGCCCGTGTC
* *
97557028 TTTCACACGGCCTAG-ACACGCTCGTGT
1 TTTCACACGGCCAAGCACACGCCCGTGT
97557055 GCTCACCCGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 11 0.46
29 13 0.54
ACGTcount: A:0.20, C:0.36, G:0.21, T:0.23
Consensus pattern (29 bp):
TTTCACACGGCCAAGCACACGCCCGTGTC
Found at i:97558626 original size:47 final size:47
Alignment explanation
Indices: 97558513--97558684 Score: 154
Period size: 47 Copynumber: 3.7 Consensus size: 47
97558503 GACGAGGGCT
* * ** * * * *
97558513 AGTGTAAGACGTGTCTAGGACATGCATCATCCAC-ATTACGATAGCC
1 AGTGTAAGACGTGTTTGGGACATGCATCGGCCTCAATAATGGTAGCC
* * * *
97558559 AGTGTAAGACCATGATTGGGACATGGCATCGGCGT-AGA-GATGAGT-GCC
1 AGTGTAAGA-CGTGTTTGGGACAT-GCATCGGCCTCA-ATAATG-GTAGCC
*
97558607 AGTGTAAGACGTGTTTGGGACATGCATTGGCCTCAATAATGGTAGCC
1 AGTGTAAGACGTGTTTGGGACATGCATCGGCCTCAATAATGGTAGCC
*
97558654 AGTGTAAGACGTGTCTGGGACATGCATCGGC
1 AGTGTAAGACGTGTTTGGGACATGCATCGGC
97558685 TAAGCTTCGT
Statistics
Matches: 100, Mismatches: 18, Indels: 15
0.75 0.14 0.11
Matches are distributed among these distances:
46 20 0.20
47 58 0.58
48 20 0.20
49 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACGTGTTTGGGACATGCATCGGCCTCAATAATGGTAGCC
Found at i:97558673 original size:94 final size:93
Alignment explanation
Indices: 97558461--97558775 Score: 316
Period size: 94 Copynumber: 3.4 Consensus size: 93
97558451 ATGATGTGAG
* * * *
97558461 AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACGAGGGCTAGTGTAAGACGTG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TAGAGATGAGTGCTAGTGTAAGACGTG
* * *
97558526 TCTAGGACATGCATCATCCACATTACGAT
65 TCTGGGACATGCATCAGCCACATAACGAT
*
97558555 AGCCAGTGTAAGACCATGAT-TGGGACATGGCATCGGCGTAGAGATGAGTGCCAGTGTAAGACGT
1 AGCCAGTGTAAGACCATG-TCTGGGACATGGCATCGGC-TAGAGATGAGTGCTAGTGTAAGACGT
* ** * * *
97558619 GTTTGGGACATGCATTGGCCTCAATAATGGT
64 GTCTGGGACATGCATCAGCCAC-ATAACGAT
* * ** * *
97558650 AGCCAGTGTAAGA-CGTGTCTGGGACAT-GCATCGGCTA-AGCTTCGTGCTAGTGTAAAACATGT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTAGAGATGAGTGCTAGTGTAAGACGTGT
*
97558712 CTGGGACATGCATCAG-CACTTATACACGAG
66 CTGGGACATGCATCAGCCAC--ATA-ACGAT
* * *
97558742 AGCTAGTGTAAGATCATGTTTGGGACATGGCATC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATC
97558776 AACAACTTAA
Statistics
Matches: 181, Mismatches: 33, Indels: 14
0.79 0.14 0.06
Matches are distributed among these distances:
90 2 0.01
91 35 0.19
92 16 0.09
93 21 0.12
94 88 0.49
95 19 0.10
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (93 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTAGAGATGAGTGCTAGTGTAAGACGTGT
CTGGGACATGCATCAGCCACATAACGAT
Found at i:97559640 original size:55 final size:55
Alignment explanation
Indices: 97559525--97559656 Score: 142
Period size: 55 Copynumber: 2.4 Consensus size: 55
97559515 CTTAAAATTT
* * * * **
97559525 TAAGTCAATATTGTCCACGAGTAGGCCACACGGGCGTATGCCCTAGCCGTGTCTA
1 TAAGTCAGTATTGTCCACGGGTAGGCCACACGGGCGTACGCCATAGCCGTCCCTA
* * *
97559580 TAAGTCAGTATTGTCCACGGGTAGGCCATACGGGCGTACGTCATAGTCGTACCCTA
1 TAAGTCAGTATTGTCCACGGGTAGGCCACACGGGCGTACGCCATAGCCGT-CCCTA
*
97559636 -AAGTCAGTGTTG-CACACGGGT
1 TAAGTCAGTATTGTC-CACGGGT
97559657 TAAGGTCATG
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
54 1 0.02
55 61 0.94
56 3 0.05
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.24
Consensus pattern (55 bp):
TAAGTCAGTATTGTCCACGGGTAGGCCACACGGGCGTACGCCATAGCCGTCCCTA
Found at i:97566047 original size:47 final size:46
Alignment explanation
Indices: 97565933--97566292 Score: 139
Period size: 47 Copynumber: 7.6 Consensus size: 46
97565923 GTTATGTGAG
* * **
97565933 AGCCAGTGTAAGACCATGTCTGGGACATGGCAT-AG--AAATTGATACG
1 AGCCAGTGTAAGA-CATGTCTGGGACATGG-ATCAGCCACATT-ACAAT
*
97565979 AGCGCTAGTGTAAGACGTGTCTGGGACATGGATCAGCCACATTACAAT
1 AGC-C-AGTGTAAGACATGTCTGGGACATGGATCAGCCACATTACAAT
* ** * * * *
97566027 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGTAGA-GATGAGT
1 AGCCAGTGTAAGA-CATGTCTGGGACATGG-ATCAG-CCACATTA-CAAT
* * * * * * * ***
97566076 -GCCAGTTTAAGACGTATCTGGGACATGCATCGGCCTCAATGATGGT
1 AGCCAGTGTAAGACATGTCTGGGACATGGATCAGCCAC-ATTACAAT
* * *
97566122 AGCCAGTGTAAGACGTGTCTGGGACATGCATCAGCTA-AGCTT-C-AT
1 AGCCAGTGTAAGACATGTCTGGGACATGGATCAGCCACA--TTACAAT
* * * *
97566167 -GCTAGTGTAAGACATGTCTGGGACATGCATCAG-CACTTATACACGAG
1 AGCCAGTGTAAGACATGTCTGGGACATGGATCAGCCACAT-TACA--AT
* * * * * *
97566214 AGCTAGTGTAAGACCGTGTCTAGGACATGGCATCGGCCTCGATGA-AGAT
1 AGCCAGTGTAAGA-CATGTCTGGGACATGG-ATCAGCCAC-ATTACA-AT
*
97566263 AGCCAGTGTAATACCATGTCTGGGACATGG
1 AGCCAGTGTAAGA-CATGTCTGGGACATGG
97566293 CATCGGAAAC
Statistics
Matches: 241, Mismatches: 48, Indels: 47
0.72 0.14 0.14
Matches are distributed among these distances:
42 1 0.00
43 2 0.01
44 32 0.13
45 2 0.01
46 22 0.09
47 82 0.34
48 42 0.17
49 49 0.20
50 5 0.02
51 3 0.01
52 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
AGCCAGTGTAAGACATGTCTGGGACATGGATCAGCCACATTACAAT
Found at i:97566096 original size:94 final size:93
Alignment explanation
Indices: 97565933--97566249 Score: 284
Period size: 94 Copynumber: 3.4 Consensus size: 93
97565923 GTTATGTGAG
* * * * * *
97565933 AGCCAGTGTAAGACCATGTCTGGGACATGGCATAGAAATTGATACGAGCGCTAGTGTAAGACGTG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCG-GATAGAGATGAGTGCTAGTGTAAGACGTG
*
97565998 TCTGGGACATGGATCAGCCACATTACAAT
65 TCTGGGACATGCATCAGCCACATTACAAT
* * * *
97566027 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGTAGAGATGAGTGCCAGTTTAAGACGTA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-ATAGAGATGAGTGCTAGTGTAAGACGTG
* * * ***
97566092 TCTGGGACATGCATCGGCCTCAATGATGGT
65 TCTGGGACATGCATCAGCCAC-ATTACAAT
* * * * * *
97566122 AGCCAGTGTAAGA-CGTGTCTGGGACAT-GCATCAGCTA-AGCTTCA-TGCTAGTGTAAGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGATAGAG-ATGAGTGCTAGTGTAAGACGTG
* *
97566183 TCTGGGACATGCATCAG-CACTTATACACGAG
65 TCTGGGACATGCATCAGCCACAT-TACA--AT
* * *
97566214 AGCTAGTGTAAGACCGTGTCTAGGACATGGCATCGG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
97566250 CCTCGATGAA
Statistics
Matches: 178, Mismatches: 37, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
89 1 0.01
90 3 0.02
91 31 0.17
92 16 0.09
93 19 0.11
94 91 0.51
95 17 0.10
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (93 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGATAGAGATGAGTGCTAGTGTAAGACGTGT
CTGGGACATGCATCAGCCACATTACAAT
Found at i:97566247 original size:141 final size:141
Alignment explanation
Indices: 97565985--97566296 Score: 341
Period size: 141 Copynumber: 2.2 Consensus size: 141
97565975 TACGAGCGCT
* *
97565985 AGTGTAAGACGTGTCTGGGACATGGATCAGCCACATTACAATAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACGTGTCTGGGACATGCATCAGCAACATTACAATAGCCAGTGTAAGACCATGTCTGG
* * * * * *
97566050 GACATGGCATCGGTGTAGAGATGAGTGCCAGTTTAAGACGTATCTGGGACATGCATCGGCCTCAA
66 GACATGGCATCGCTGTAGACACGAGAGCCAGTGTAAGACGTATCTAGGACATGCATCGGCCTCAA
* *
97566115 TGATGGTAGCC
131 TGAAGATAGCC
*
97566126 AGTGTAAGACGTGTCTGGGACATGCATCAGCTAAGC-TT-C-AT-GCTAGTGTAAGA-CATGTCT
1 AGTGTAAGACGTGTCTGGGACATGCATCAGC-AA-CATTACAATAGCCAGTGTAAGACCATGTCT
* * *
97566186 GGGACAT-GCATCAGCACT-TATACACGAGAGCTAGTGTAAGACCGTGTCTAGGACATGGCATCG
64 GGGACATGGCATC-G--CTGTAGACACGAGAGCCAGTGTAAGA-CGTATCTAGGACAT-GCATCG
*
97566249 GCCTCGATGAAGATAGCC
124 GCCTCAATGAAGATAGCC
* *
97566267 AGTGTAATACCATGTCTGGGACATGGCATC
1 AGTGTAAGA-CGTGTCTGGGACAT-GCATC
97566297 GGAAACTTAA
Statistics
Matches: 145, Mismatches: 17, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
137 5 0.03
138 15 0.10
139 28 0.19
140 15 0.10
141 60 0.41
142 16 0.11
143 6 0.04
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.24
Consensus pattern (141 bp):
AGTGTAAGACGTGTCTGGGACATGCATCAGCAACATTACAATAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGCTGTAGACACGAGAGCCAGTGTAAGACGTATCTAGGACATGCATCGGCCTCAA
TGAAGATAGCC
Found at i:97570847 original size:2 final size:2
Alignment explanation
Indices: 97570840--97570898 Score: 73
Period size: 2 Copynumber: 29.5 Consensus size: 2
97570830 CAATCAATAA
* * * * *
97570840 AG AG AG AG AG AG GG GG AG GG AG AG AG AG GG AG AG GG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
97570882 AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG A
97570899 AGTAAATTCG
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.42, C:0.00, G:0.58, T:0.00
Consensus pattern (2 bp):
AG
Found at i:97570864 original size:16 final size:16
Alignment explanation
Indices: 97570843--97570898 Score: 85
Period size: 16 Copynumber: 3.5 Consensus size: 16
97570833 TCAATAAAGA
*
97570843 GAGAGAGAGGGGGAGG
1 GAGAGAGAGGGAGAGG
97570859 GAGAGAGAGGGAGAGG
1 GAGAGAGAGGGAGAGG
* *
97570875 GAGAGAGAGAGAGAGA
1 GAGAGAGAGGGAGAGG
97570891 GAGAGAGA
1 GAGAGAGA
97570899 AGTAAATTCG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
16 37 1.00
ACGTcount: A:0.41, C:0.00, G:0.59, T:0.00
Consensus pattern (16 bp):
GAGAGAGAGGGAGAGG
Found at i:97573725 original size:26 final size:26
Alignment explanation
Indices: 97573677--97573752 Score: 73
Period size: 26 Copynumber: 2.9 Consensus size: 26
97573667 ACATATTTTC
* * *
97573677 TCAAAATTTTACGA-TGGGAAAAATTA
1 TCAAAATTTTACTAGT-GGTAAAATCA
*
97573703 TCAAAATTTTACTAGTGGTAAAATCG
1 TCAAAATTTTACTAGTGGTAAAATCA
* * *
97573729 TCAAAATTTTGCTTGGGGTAAAAT
1 TCAAAATTTTACTAGTGGTAAAAT
97573753 AGGGATAAGA
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 41 0.98
27 1 0.02
ACGTcount: A:0.39, C:0.09, G:0.17, T:0.34
Consensus pattern (26 bp):
TCAAAATTTTACTAGTGGTAAAATCA
Found at i:97577176 original size:24 final size:24
Alignment explanation
Indices: 97577144--97577192 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
97577134 TCATAACTAG
97577144 AATTCAAACAAAAGTCAATTATTA
1 AATTCAAACAAAAGTCAATTATTA
*
97577168 AATTCAAACACAAGTCAATTATTA
1 AATTCAAACAAAAGTCAATTATTA
97577192 A
1 A
97577193 GCATTCCCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.53, C:0.14, G:0.04, T:0.29
Consensus pattern (24 bp):
AATTCAAACAAAAGTCAATTATTA
Found at i:97581100 original size:40 final size:40
Alignment explanation
Indices: 97581056--97581246 Score: 183
Period size: 40 Copynumber: 4.8 Consensus size: 40
97581046 GGATATAGCT
* * *
97581056 ACTCGCTCGAATGCCTTCGGGACATAGCCCAGATATAGTA
1 ACTCGCACGAATGCCTTCGGGACATAGCCCGGATATAATA
* * *
97581096 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGACATAATA
1 ACTCGCACGAATGCCTTCGGGACATAGCCCGGATATAATA
* *
97581136 ACTCGCACGGATGCCTTCGGGA-ATTAGCCCGGGTATAATA
1 ACTCGCACGAATGCCTTCGGGACA-TAGCCCGGATATAATA
* * * * *
97581176 ACTCGCAC-AATTGCCTTCGGG-CTTATCTCGGA-ATTAGTC
1 ACTCGCACGAA-TGCCTTCGGGACATAGCCCGGATA-TAATA
* * *
97581215 ACTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACGAATGCCTTCGGGACATAGCCCGG
97581247 TTATCATCCG
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 1 0.01
39 27 0.22
40 96 0.77
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
ACTCGCACGAATGCCTTCGGGACATAGCCCGGATATAATA
Found at i:97581164 original size:80 final size:79
Alignment explanation
Indices: 97581056--97581244 Score: 213
Period size: 80 Copynumber: 2.4 Consensus size: 79
97581046 GGATATAGCT
* *
97581056 ACTCGCTCGAATGCCTTCGGGACA-TAGCCCAGATATAGTAACTCGCACCAA-TGCCTTCGGGAC
1 ACTCGCACGAATGCCTTCGGGA-ATTAGCCCAGATATAATAACTCGCA-CAATTGCCTTCGGG-C
97581119 TTAGCCCGGACA-TAATA
63 TTAGCCCGGA-ATTAATA
* * *
97581136 ACTCGCACGGATGCCTTCGGGAATTAGCCCGGGTATAATAACTCGCACAATTGCCTTCGGGCTTA
1 ACTCGCACGAATGCCTTCGGGAATTAGCCCAGATATAATAACTCGCACAATTGCCTTCGGGCTTA
* * * *
97581201 TCTCGGAATTAGTC
66 GCCCGGAATTAATA
* * *
97581215 ACTAGCACAAATGCCTTCGGGACTTAGCCC
1 ACTCGCACGAATGCCTTCGGGAATTAGCCC
97581245 GGTTATCATC
Statistics
Matches: 93, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
78 1 0.01
79 42 0.45
80 50 0.54
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.23
Consensus pattern (79 bp):
ACTCGCACGAATGCCTTCGGGAATTAGCCCAGATATAATAACTCGCACAATTGCCTTCGGGCTTA
GCCCGGAATTAATA
Found at i:97581245 original size:79 final size:80
Alignment explanation
Indices: 97581065--97581246 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
97581055 TACTCGCTCG
* * *
97581065 AATGCCTTCGGGACATAGCCCAGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGAC
1 AATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACCAATGCCTTCGGGACTTAGCCCGGAC
* *
97581130 ATAATAACTCGCACG
66 ATAATAACTAGCACA
* * * * *
97581145 GATGCCTTCGGGAATTAGCCCGGGTATAATAACTCGCA-CAATTGCCTTCGGG-CTTATCTCGGA
1 AATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACCAA-TGCCTTCGGGACTTAGCCCGGA
* *
97581208 -ATTAGTCACTAGCACA
65 CA-TAATAACTAGCACA
97581224 AATGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
97581247 TTATCATCCG
Statistics
Matches: 86, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
78 1 0.01
79 43 0.50
80 42 0.49
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACCAATGCCTTCGGGACTTAGCCCGGAC
ATAATAACTAGCACA
Found at i:97587662 original size:40 final size:40
Alignment explanation
Indices: 97587611--97587840 Score: 365
Period size: 40 Copynumber: 5.8 Consensus size: 40
97587601 GCATATAGCT
*
97587611 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
**
97587651 GTTCGCACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
97587691 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
97587731 ACTCGCACAAATGCCTTCGGGACTTAGCCCGAAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
97587771 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
97587811 ACTAGCACAAATGCCTTCGGAACTTAGCCC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC
97587841 CGTTATCATC
Statistics
Matches: 179, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
40 177 0.99
41 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:97599086 original size:43 final size:43
Alignment explanation
Indices: 97599014--97599143 Score: 152
Period size: 43 Copynumber: 3.0 Consensus size: 43
97599004 ATTAGCGGCG
* * * *
97599014 TTTCACAAGCGCCGCTAAAGACCACGACTTTTAGCGACGTTTT
1 TTTCTCAAACGCCGCTAAAAACCACGACTTTTAGCGACGCTTT
* * * **
97599057 TTTCTCAAACGCCGCAAAAAACCATGACTTTTAGTGGTGCTTT
1 TTTCTCAAACGCCGCTAAAAACCACGACTTTTAGCGACGCTTT
* * *
97599100 TTTCTCAAACGCCACTAAAAACCACGACCTTTAGCGGCGCTTT
1 TTTCTCAAACGCCGCTAAAAACCACGACTTTTAGCGACGCTTT
97599143 T
1 T
97599144 CCCGAAAACA
Statistics
Matches: 72, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 72 1.00
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.29
Consensus pattern (43 bp):
TTTCTCAAACGCCGCTAAAAACCACGACTTTTAGCGACGCTTT
Found at i:97603733 original size:6 final size:6
Alignment explanation
Indices: 97603695--97603768 Score: 57
Period size: 6 Copynumber: 13.0 Consensus size: 6
97603685 TATCTTCACT
* * *
97603695 CTCTTC TTCTTC CTCCTC C-C-CC CTCTT- CTCTTC CTCTTC CTCTTC
1 CTCTTC CTCTTC CTCTTC CTCTTC CTCTTC CTCTTC CTCTTC CTCTTC
* * * *
97603740 TTCTTC TTCTTC TTCTTC TTCTT- CTCTTC
1 CTCTTC CTCTTC CTCTTC CTCTTC CTCTTC
97603769 AAAATCTATT
Statistics
Matches: 57, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
4 2 0.04
5 11 0.19
6 44 0.77
ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54
Consensus pattern (6 bp):
CTCTTC
Found at i:97603743 original size:3 final size:3
Alignment explanation
Indices: 97603718--97603768 Score: 70
Period size: 3 Copynumber: 17.7 Consensus size: 3
97603708 TCCTCCCCCC
* *
97603718 TCT TC- TCT TCC TCT TCC TCT TCT TCT TCT TCT TCT TCT TCT TCT TC-
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
97603764 TCT TC
1 TCT TC
97603769 AAAATCTATT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
2 4 0.10
3 38 0.90
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (3 bp):
TCT
Found at i:97604687 original size:21 final size:22
Alignment explanation
Indices: 97604666--97604709 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
97604656 TCATGAACCC
*
97604666 CTAAC-CCTTAACC-TATAACCC
1 CTAACACCTAAACCTTA-AACCC
97604687 CTAACACCTAAACCTTAAACCC
1 CTAACACCTAAACCTTAAACCC
97604709 C
1 C
97604710 ATCCTTAAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 5 0.25
22 13 0.65
23 2 0.10
ACGTcount: A:0.36, C:0.43, G:0.00, T:0.20
Consensus pattern (22 bp):
CTAACACCTAAACCTTAAACCC
Found at i:97606392 original size:192 final size:192
Alignment explanation
Indices: 97606065--97606455 Score: 773
Period size: 192 Copynumber: 2.0 Consensus size: 192
97606055 TTATTAGCAT
97606065 ACATAAACAAAAGGTCTTAACAAACAGACTTTTTAAAAGAAACATTGATTAGTAGGTTCTTCACC
1 ACATAAACAAAAGGTCTTAACAAACAGACTTTTTAAAAGAAACATTGATTAGTAGGTTCTTCACC
97606130 ACAACACACTTGAACATAAAATAAAACTTATACTTTGCCTTAAGCAACATACCTTAACAAACTTA
66 ACAACACACTTGAACATAAAATAAAACTTATACTTTGCCTTAAGCAACATACCTTAACAAACTTA
97606195 TAAATCATAAAATCCGCCACTCATGGTGCACAACTTAAACAAGTACTATACTGGCGAGTACA
131 TAAATCATAAAATCCGCCACTCATGGTGCACAACTTAAACAAGTACTATACTGGCGAGTACA
97606257 ACATAAACAAAAGGTCTTAACAAACAGACTTTTTAAAAGAAACATTGATTAGTAGGTTCTTCACC
1 ACATAAACAAAAGGTCTTAACAAACAGACTTTTTAAAAGAAACATTGATTAGTAGGTTCTTCACC
97606322 ACAACACACTTGAACATAAAATAAAACTTATACTTTGCCTTAAGCAACATACCTTAACAAACTTA
66 ACAACACACTTGAACATAAAATAAAACTTATACTTTGCCTTAAGCAACATACCTTAACAAACTTA
*
97606387 TAAATCATAAAATCCGCCACTCATGGTGCACAACTTAAACAAGTACTATACTGGCGAGTATA
131 TAAATCATAAAATCCGCCACTCATGGTGCACAACTTAAACAAGTACTATACTGGCGAGTACA
97606449 ACATAAA
1 ACATAAA
97606456 TCCGTTAACA
Statistics
Matches: 198, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
192 198 1.00
ACGTcount: A:0.43, C:0.21, G:0.10, T:0.26
Consensus pattern (192 bp):
ACATAAACAAAAGGTCTTAACAAACAGACTTTTTAAAAGAAACATTGATTAGTAGGTTCTTCACC
ACAACACACTTGAACATAAAATAAAACTTATACTTTGCCTTAAGCAACATACCTTAACAAACTTA
TAAATCATAAAATCCGCCACTCATGGTGCACAACTTAAACAAGTACTATACTGGCGAGTACA
Found at i:97606556 original size:59 final size:59
Alignment explanation
Indices: 97606484--97606602 Score: 229
Period size: 59 Copynumber: 2.0 Consensus size: 59
97606474 CTGGGCGGGG
97606484 TATTACATAAGATTTATAGTGTGACATACCTTACTCTTAAGTGGATTATGGACTATGTA
1 TATTACATAAGATTTATAGTGTGACATACCTTACTCTTAAGTGGATTATGGACTATGTA
*
97606543 TATTACATAAGATTTATAGTGTGGCATACCTTACTCTTAAGTGGATTATGGACTATGTA
1 TATTACATAAGATTTATAGTGTGACATACCTTACTCTTAAGTGGATTATGGACTATGTA
97606602 T
1 T
97606603 GCATGACTTC
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.39
Consensus pattern (59 bp):
TATTACATAAGATTTATAGTGTGACATACCTTACTCTTAAGTGGATTATGGACTATGTA
Found at i:97613398 original size:38 final size:39
Alignment explanation
Indices: 97613356--97613651 Score: 240
Period size: 38 Copynumber: 7.8 Consensus size: 39
97613346 ACTGACACAA
* * *
97613356 AGCCTAG-TAGGCGCTAAGCTTGAATAACACCGGCATTG
1 AGCCTAGCTAGGCACTAAGCCTGAATAACACCGGCAATG
*
97613394 AGCCTA-CTAGGCACTAAGCTTGAATAACACCGG-AATG
1 AGCCTAGCTAGGCACTAAGCCTGAATAACACCGGCAATG
* * *
97613431 AAGCCT-GCTAGGCCCTAAGCCTGAACAACACCAGC-ATG
1 -AGCCTAGCTAGGCACTAAGCCTGAATAACACCGGCAATG
* * ** *
97613469 AAGCCT-GCTAGCCACTAAGCCTAAATAACACTAGCACTG
1 -AGCCTAGCTAGGCACTAAGCCTGAATAACACCGGCAATG
* * * * * **
97613508 AGCCT-CCTCGACACTAAGCTTGAATAACACTGGCAAAA
1 AGCCTAGCTAGGCACTAAGCCTGAATAACACCGGCAATG
*
97613546 AGCCT-GCTAGGCACTAAGCCTGAATAACACAGGTACAA--
1 AGCCTAGCTAGGCACTAAGCCTGAATAACACCGG--CAATG
* * *
97613584 AGCCTA-CTAGCCACTAAGCCTG-ATAACATCGGCATTG
1 AGCCTAGCTAGGCACTAAGCCTGAATAACACCGGCAATG
* *
97613621 AGCC-AGCTAGGCAGTAAGCTTGAATAACACC
1 AGCCTAGCTAGGCACTAAGCCTGAATAACACC
97613652 TAATTCAAAT
Statistics
Matches: 212, Mismatches: 34, Indels: 24
0.79 0.13 0.09
Matches are distributed among these distances:
35 2 0.01
36 1 0.00
37 28 0.13
38 176 0.83
39 2 0.01
40 3 0.01
ACGTcount: A:0.34, C:0.28, G:0.20, T:0.18
Consensus pattern (39 bp):
AGCCTAGCTAGGCACTAAGCCTGAATAACACCGGCAATG
Found at i:97613555 original size:114 final size:114
Alignment explanation
Indices: 97613351--97613651 Score: 322
Period size: 114 Copynumber: 2.6 Consensus size: 114
97613341 GATACACTGA
* * * * * * * *
97613351 CACAAAGCCTAGTAGGCGCTAAGCTTGAATAACACCGGCATTGAGCCTACTAGGCACTAAGCTTG
1 CACAAAGCCTACTAGCCACTAAGCCTAAATAACACCAGCACTGAGCCTACTAGACACTAAGCTTG
* *
97613416 AATAACACCGGAATGAAGCCTGCTAGGCCCTAAGCCTGAACAACACCA-G
66 AATAACACCGGAATAAAGCCTGCTAGGCACTAAGCCTGAACAACA-CAGG
** * * * *
97613465 CATGAAGCCTGCTAGCCACTAAGCCTAAATAACACTAGCACTGAGCCTCCTCGACACTAAGCTTG
1 CACAAAGCCTACTAGCCACTAAGCCTAAATAACACCAGCACTGAGCCTACTAGACACTAAGCTTG
* *
97613530 AATAACACTGGCAA-AAAGCCTGCTAGGCACTAAGCCTGAATAACACAGG
66 AATAACACCGG-AATAAAGCCTGCTAGGCACTAAGCCTGAACAACACAGG
* * * * * * *
97613579 TACAAAGCCTACTAGCCACTAAGCCT-GATAACATCGGCATTGAGCC-AGCTAGGCAGTAAGCTT
1 CACAAAGCCTACTAGCCACTAAGCCTAAATAACACCAGCACTGAGCCTA-CTAGACACTAAGCTT
97613642 GAATAACACC
65 GAATAACACC
97613652 TAATTCAAAT
Statistics
Matches: 152, Mismatches: 32, Indels: 7
0.80 0.17 0.04
Matches are distributed among these distances:
113 38 0.25
114 112 0.74
115 2 0.01
ACGTcount: A:0.34, C:0.28, G:0.20, T:0.18
Consensus pattern (114 bp):
CACAAAGCCTACTAGCCACTAAGCCTAAATAACACCAGCACTGAGCCTACTAGACACTAAGCTTG
AATAACACCGGAATAAAGCCTGCTAGGCACTAAGCCTGAACAACACAGG
Found at i:97624428 original size:39 final size:40
Alignment explanation
Indices: 97624327--97624550 Score: 275
Period size: 39 Copynumber: 5.7 Consensus size: 40
97624317 TTGAATGATG
*
97624327 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
97624366 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
97624407 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
97624446 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
97624485 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* * *
97624524 AACGGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
97624551 AACGAGGAGC
Statistics
Matches: 166, Mismatches: 10, Indels: 16
0.86 0.05 0.08
Matches are distributed among these distances:
39 77 0.46
40 75 0.45
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:97624514 original size:79 final size:81
Alignment explanation
Indices: 97624327--97624550 Score: 291
Period size: 79 Copynumber: 2.8 Consensus size: 81
97624317 TTGAATGATG
* * *
97624327 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAGACCCGAAGGCAT
*
97624390 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAA
97624407 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGACCCGAAGGCAT
97624468 TTGTGCGAGATACTAAA
65 TTGTGCGAGATACTAAA
* * * * * *
97624485 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACGGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
97624549 TG
66 TG
97624551 AACGAGGAGC
Statistics
Matches: 128, Mismatches: 9, Indels: 14
0.85 0.06 0.09
Matches are distributed among these distances:
78 38 0.30
79 53 0.41
80 37 0.29
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:97624581 original size:79 final size:79
Alignment explanation
Indices: 97624327--97624583 Score: 215
Period size: 79 Copynumber: 3.3 Consensus size: 79
97624317 TTGAATGATG
* * * * *
97624327 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
97624389 TTTGTGCGAGATACTAAT
62 TTTGAACGAGATACTAAA
* * *
97624407 TCCGGGCT-AAGCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
**
97624471 TGCGAGATACTAAA
66 AACGAGATACTAAA
* * *
97624485 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACGGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
* *
97624548 TTGAACGAGGA-GCTATA
63 TTGAACGA-GATACTAAA
*
97624565 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAATCCCGAAGG
97624584 TACGTGATTT
Statistics
Matches: 150, Mismatches: 19, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
78 36 0.24
79 67 0.45
80 44 0.29
81 3 0.02
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGATACTAAA
Found at i:97632327 original size:76 final size:79
Alignment explanation
Indices: 97632192--97632449 Score: 311
Period size: 76 Copynumber: 3.3 Consensus size: 79
97632182 TTGAATGATG
* * *
97632192 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-ATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAATCCGGGCTAAG-TCCCGAAGGCA
97632252 TTTGTGCGAGATACTAAT
62 TTTGTGCGAGATACTAAT
*
97632270 TCCGGGCTAAG-CCGAAGGCATTTGTGCGAGATACT-AATTCGGGCTAAG-CCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
97632332 TGCGAGATACTAAT
66 TGCGAGATACTAAT
* *
97632346 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
*
97632411 TGCGA-TTACT-AT
66 TGCGAGATACTAAT
* *
97632423 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
97632450 AACGAGGAGC
Statistics
Matches: 160, Mismatches: 10, Indels: 19
0.85 0.05 0.10
Matches are distributed among these distances:
76 46 0.29
77 37 0.23
78 43 0.27
79 34 0.21
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAT
Found at i:97632363 original size:39 final size:39
Alignment explanation
Indices: 97632243--97632449 Score: 305
Period size: 39 Copynumber: 5.3 Consensus size: 39
97632233 GGACTAAGAT
97632243 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
97632281 CCGAAGGCATTTGTGCGAGATACTAATT-CGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
97632319 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
* * *
97632358 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-C
* * *
97632398 CCGAAGGCATTTGTGCGA-TTACT-ATAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAG-C
97632437 CCGAAGGCATTTG
1 CCGAAGGCATTTG
97632450 AACGAGGAGC
Statistics
Matches: 158, Mismatches: 7, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
37 9 0.06
38 57 0.36
39 73 0.46
40 19 0.12
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGC
Found at i:97632467 original size:79 final size:77
Alignment explanation
Indices: 97632192--97632482 Score: 285
Period size: 78 Copynumber: 3.7 Consensus size: 77
97632182 TTGAATGATG
* **
97632192 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-ATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAG-GACTA-ATCCGGGTTAAG-TCCCGAAGGCAT
97632253 TTGTGCGAGATACTAAT
61 TTGTGCGAGATACTAAT
* * *
97632270 TCCGGGCTAAG-CCGAAGGCATTTGTGCGAGATACTAATTCGGGCTAAG-CCCGAAGGCATTTGT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAG-GACTAATCCGGGTTAAGTCCCGAAGGCATTTGT
97632333 GCGAGATACTAAT
65 GCGAGATACTAAT
*
97632346 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAG-GACT-AATCCGGGTTAAGTCCCGAAGGCATTTG
*
97632411 TGCGA-TTACT-AT
64 TGCGAGATACTAAT
* * ** * *
97632423 AACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATATCC-GGTTAAATTCCGAAGG
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGGA-CTA-ATCCGGGTTAAGTCCCGAAGG
97632483 TACGTGATTT
Statistics
Matches: 186, Mismatches: 16, Indels: 22
0.83 0.07 0.10
Matches are distributed among these distances:
76 46 0.25
77 39 0.21
78 58 0.31
79 43 0.23
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (77 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGGACTAATCCGGGTTAAGTCCCGAAGGCATTTGTG
CGAGATACTAAT
Found at i:97637123 original size:40 final size:40
Alignment explanation
Indices: 97637061--97637294 Score: 373
Period size: 40 Copynumber: 5.9 Consensus size: 40
97637051 ATTCAGATTG
*
97637061 ATAACCGAGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
97637100 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
97637140 ATAACCGGGCCAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
97637180 ATAACCGGGCCAAATCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
97637220 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
97637260 ATAACCGGGCTAAGTCCCGAAGG-ATTTGAGCGAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
97637295 AGCTATATCG
Statistics
Matches: 182, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
39 22 0.12
40 160 0.88
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:97642488 original size:27 final size:27
Alignment explanation
Indices: 97642457--97642634 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
97642447 TAAATTGTAC
97642457 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
97642484 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
97642510 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
97642538 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
97642566 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
97642593 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
97642620 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
97642635 GACTCAATAT
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 108 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:97642571 original size:82 final size:81
Alignment explanation
Indices: 97642458--97642613 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
97642448 AAATTGTACA
*
97642458 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
97642522 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
97642539 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
97642604 TGCGAGTTGA
65 TGCGAATTGA
97642614 TTATATAGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:97642625 original size:82 final size:81
Alignment explanation
Indices: 97642454--97642634 Score: 238
Period size: 82 Copynumber: 2.2 Consensus size: 81
97642444 GATTAAATTG
*
97642454 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
97642519 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
97642535 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
97642599 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
97642617 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
97642635 GACTCAATAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.21
82 67 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:97649283 original size:27 final size:27
Alignment explanation
Indices: 97649252--97649427 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
97649242 TAAATTGTAC
97649252 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
97649279 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
97649305 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
97649333 GGCACTAAGTGTGCGAGTTTGACTATGA
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
97649361 AGCA-TAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
97649387 AGCACTAAGTGTGCGAGTTGA-TATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
97649413 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
97649428 GACTCGATAT
Statistics
Matches: 127, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
26 31 0.24
27 85 0.67
28 11 0.09
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:97649369 original size:81 final size:81
Alignment explanation
Indices: 97649253--97649407 Score: 224
Period size: 81 Copynumber: 1.9 Consensus size: 81
97649243 AAATTGTACA
**
97649253 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGAAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
97649317 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
97649334 GCACTAAGTGTGCGAGTTTGACTATGAAGCA-TAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGAAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
97649398 TGCGAGTTGA
65 TGCGAATTGA
97649408 TATATAGCAC
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
81 52 0.79
82 14 0.21
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGAAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:97654441 original size:40 final size:40
Alignment explanation
Indices: 97654378--97654637 Score: 384
Period size: 40 Copynumber: 6.6 Consensus size: 40
97654368 ATTCGGATTG
97654378 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
97654417 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
97654457 ATAACC-GGCCAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
97654496 ATAACCGGGCCAAGTCCCGAAGGCAATTGTACGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
97654536 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
97654576 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
97654616 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
97654638 TACTTGGTTT
Statistics
Matches: 204, Mismatches: 14, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
39 66 0.32
40 138 0.68
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:97654511 original size:79 final size:80
Alignment explanation
Indices: 97654378--97654604 Score: 377
Period size: 79 Copynumber: 2.9 Consensus size: 80
97654368 ATTCGGATTG
*
97654378 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
*
97654442 TTTGTGCAAGTTACT
66 TTTGTACAAGTTACT
* *
97654457 ATAACC-GGCCAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCCAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
* *
97654521 ATTGTACGAGTTACT
66 TTTGTACAAGTTACT
*
97654536 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
97654601 TTTG
66 TTTG
97654605 AGCGAGTAGC
Statistics
Matches: 136, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
78 6 0.04
79 72 0.53
80 58 0.43
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
TTTGTACAAGTTACT
Found at i:97654634 original size:119 final size:119
Alignment explanation
Indices: 97654378--97654637 Score: 364
Period size: 119 Copynumber: 2.2 Consensus size: 119
97654368 ATTCGGATTG
* * * * *
97654378 ATAACCGGG-CTAAGCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCCAAACCCCGAAGGCAATTGTACGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
* *
97654442 TTTGTGCAAGTTACTATAACCGGCCAAGTCCCGAAGGCATTTGTGCGAGTTACT
66 ATTGTGCAAGTTACTATAACCGGCCAAGTCCCGAAGGCATTTGAGCGAGTTACT
**
97654496 ATAACCGGGCCAAGTCCCGAAGGCAATTGTACGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCCAAACCCCGAAGGCAATTGTACGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
* *
97654561 ATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
66 ATTGTGCAAGTTACTATAACC-GGCCAAGTCCCGAAGGCATTTGAGCGAGTTA-CT
* *
97654616 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCCAAACCCCGAAGG
97654638 TACTTGGTTT
Statistics
Matches: 125, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
118 9 0.07
119 83 0.66
120 33 0.26
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (119 bp):
ATAACCGGGCCAAACCCCGAAGGCAATTGTACGAGTTACTATAACCGGGCTAAGTCCCGAAGGCA
ATTGTGCAAGTTACTATAACCGGCCAAGTCCCGAAGGCATTTGAGCGAGTTACT
Found at i:97663368 original size:24 final size:24
Alignment explanation
Indices: 97663321--97663368 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
97663311 TGCCGATATA
* **
97663321 TTAGCTCGTAAGATCTTATTGTTT
1 TTAGCTCGTAAGAGCTTACCGTTT
*
97663345 TTAGCTCGTCAGAGCTTACCGTTT
1 TTAGCTCGTAAGAGCTTACCGTTT
97663369 CAGCTCAATA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.44
Consensus pattern (24 bp):
TTAGCTCGTAAGAGCTTACCGTTT
Found at i:97663423 original size:25 final size:25
Alignment explanation
Indices: 97663368--97663432 Score: 73
Period size: 26 Copynumber: 2.6 Consensus size: 25
97663358 GCTTACCGTT
97663368 TCAGCTC-AATAGAGCTTACTGTCCA
1 TCAGCTCGAA-AGAGCTTACTGTCCA
*
97663393 TCAGCTCAGAAGGAGCTTACTGAT-CA
1 TCAGCTC-GAAAGAGCTTACTG-TCCA
97663419 T-AGCTCGAAAGAGC
1 TCAGCTCGAAAGAGC
97663433 GGAAATGATA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
24 7 0.20
25 12 0.34
26 13 0.37
27 3 0.09
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.23
Consensus pattern (25 bp):
TCAGCTCGAAAGAGCTTACTGTCCA
Found at i:97663583 original size:20 final size:20
Alignment explanation
Indices: 97663558--97663643 Score: 86
Period size: 20 Copynumber: 4.4 Consensus size: 20
97663548 AAAAGCTATG
97663558 TGTTTATACGGATGAATTAT
1 TGTTTATACGGATGAATTAT
* * *
97663578 TGTTTATATGGATGAAGTAC
1 TGTTTATACGGATGAATTAT
* * *
97663598 TGTTTAAACAGATGAGTTAT
1 TGTTTATACGGATGAATTAT
* *
97663618 AG-TTAT-CGAATGAATTAT
1 TGTTTATACGGATGAATTAT
97663636 TGTTTATA
1 TGTTTATA
97663644 TGATTGAGAG
Statistics
Matches: 49, Mismatches: 15, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
18 10 0.20
19 7 0.14
20 32 0.65
ACGTcount: A:0.33, C:0.05, G:0.20, T:0.43
Consensus pattern (20 bp):
TGTTTATACGGATGAATTAT
Found at i:97672978 original size:13 final size:13
Alignment explanation
Indices: 97672960--97672984 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97672950 TATCTAGGGT
97672960 AAATTATTTACAC
1 AAATTATTTACAC
97672973 AAATTATTTACA
1 AAATTATTTACA
97672985 GATAAGTTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (13 bp):
AAATTATTTACAC
Found at i:97691542 original size:63 final size:62
Alignment explanation
Indices: 97691475--97691614 Score: 164
Period size: 59 Copynumber: 2.3 Consensus size: 62
97691465 AAAGATAATC
* * *
97691475 ATATATATTTATATAAATTTCCAAAAT-TAACATGCATTAAACCAATCAAAGCATGTATATAT
1 ATATATATTTATATAAA-TACCAAAATACAACATGCATTAAACCAATCAAAGCATGCATATAT
* * * *
97691537 -TATATA-TT-TATACATACGAAACTACAACATGCATTAAACCAATCAAAGCATGCATGTAT
1 ATATATATTTATATAAATACCAAAATACAACATGCATTAAACCAATCAAAGCATGCATATAT
97691596 -TATATATTTATATATAATA
1 ATATATATTTATATA-AATA
97691615 AAATATCTAT
Statistics
Matches: 66, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
58 6 0.09
59 43 0.65
60 4 0.06
61 10 0.15
62 3 0.05
ACGTcount: A:0.46, C:0.14, G:0.06, T:0.35
Consensus pattern (62 bp):
ATATATATTTATATAAATACCAAAATACAACATGCATTAAACCAATCAAAGCATGCATATAT
Found at i:97695465 original size:40 final size:40
Alignment explanation
Indices: 97695407--97695621 Score: 301
Period size: 40 Copynumber: 5.4 Consensus size: 40
97695397 ATGGTAACCT
* * * *
97695407 GGCTAAGTCCCGAGGGCATTTGTGCTAGTGACTA-ATTCTG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCG
97695447 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
97695487 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* *
97695527 GGCTAGGTCCCGAAGGCATTTGTGCGAGTTACTATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
* **
97695567 GGCTAAGTCCTGAAGGCATTTCAGCGAG-TAGCTATATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCG
*
97695606 GGCTAAATCCCGAAGG
1 GGCTAAGTCCCGAAGG
97695622 TACTTGGTTT
Statistics
Matches: 160, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 16 0.10
40 143 0.89
41 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
Found at i:97711819 original size:59 final size:59
Alignment explanation
Indices: 97711727--97711844 Score: 236
Period size: 59 Copynumber: 2.0 Consensus size: 59
97711717 TCCCCGAGCT
97711727 CGTAACTTACGAGCAAAATCTATAAAACAGAGTAACAAAAACACACACAGAGTAAACTA
1 CGTAACTTACGAGCAAAATCTATAAAACAGAGTAACAAAAACACACACAGAGTAAACTA
97711786 CGTAACTTACGAGCAAAATCTATAAAACAGAGTAACAAAAACACACACAGAGTAAACTA
1 CGTAACTTACGAGCAAAATCTATAAAACAGAGTAACAAAAACACACACAGAGTAAACTA
97711845 ACTTAGCTTA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.53, C:0.20, G:0.12, T:0.15
Consensus pattern (59 bp):
CGTAACTTACGAGCAAAATCTATAAAACAGAGTAACAAAAACACACACAGAGTAAACTA
Found at i:97712267 original size:35 final size:35
Alignment explanation
Indices: 97712206--97712304 Score: 96
Period size: 35 Copynumber: 2.8 Consensus size: 35
97712196 TATATCCAAG
* * *
97712206 TATACAATTTCAATATAAGTTCACATGTAATC-GAA
1 TATACAAATTCAATATAACTT-ACATGTAAGCAGAA
*
97712241 TACTA-AAATTCAATATAACCTTACATG-CAGCAGAA
1 TA-TACAAATTCAATATAA-CTTACATGTAAGCAGAA
*
97712276 TATACAAGTTCAATATAAGCTTACATGTA
1 TATACAAATTCAATATAA-CTTACATGTA
97712305 CTTACCTATA
Statistics
Matches: 52, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
34 4 0.08
35 44 0.85
36 4 0.08
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.31
Consensus pattern (35 bp):
TATACAAATTCAATATAACTTACATGTAAGCAGAA
Found at i:97716329 original size:29 final size:29
Alignment explanation
Indices: 97716296--97716353 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
97716286 ATTGCTTCCG
97716296 TACATCCATTATATCTTCATTTAAAATTA
1 TACATCCATTATATCTTCATTTAAAATTA
97716325 TACATCCATTATATCTTCATTTAAAATTA
1 TACATCCATTATATCTTCATTTAAAATTA
97716354 AATAATATAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.38, C:0.17, G:0.00, T:0.45
Consensus pattern (29 bp):
TACATCCATTATATCTTCATTTAAAATTA
Found at i:97716955 original size:18 final size:18
Alignment explanation
Indices: 97716932--97716968 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
97716922 TAAAAATATA
97716932 TGCTCTTTAAAGATTATT
1 TGCTCTTTAAAGATTATT
97716950 TGCTCTTTAAAGATTATT
1 TGCTCTTTAAAGATTATT
97716968 T
1 T
97716969 TTTCTCCCGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.11, G:0.11, T:0.51
Consensus pattern (18 bp):
TGCTCTTTAAAGATTATT
Found at i:97720643 original size:24 final size:23
Alignment explanation
Indices: 97720599--97720644 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
97720589 ACTCATATAC
97720599 TACAATTAAATTTTTAGAAAAAT
1 TACAATTAAATTTTTAGAAAAAT
97720622 TACAATTAAATTTTTAGAAAAAT
1 TACAATTAAATTTTTAGAAAAAT
97720645 AGGCAGCACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.39
Consensus pattern (23 bp):
TACAATTAAATTTTTAGAAAAAT
Found at i:97722078 original size:22 final size:22
Alignment explanation
Indices: 97722053--97722100 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
97722043 TTTCTTGTTG
* *
97722053 TTTT-CTATCTATTTTGTTACCA
1 TTTTACTAT-TATGTTGCTACCA
*
97722075 TTTTACTATTATGTTGCTACTA
1 TTTTACTATTATGTTGCTACCA
97722097 TTTT
1 TTTT
97722101 GTTGTTATTG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.19, C:0.15, G:0.06, T:0.60
Consensus pattern (22 bp):
TTTTACTATTATGTTGCTACCA
Found at i:97722177 original size:30 final size:30
Alignment explanation
Indices: 97722141--97722199 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
97722131 TATGTTTTTA
97722141 TTAATTTTGTTATTATTTTAAAGACATTTG
1 TTAATTTTGTTATTATTTTAAAGACATTTG
*
97722171 TTAATTTTGTTATTATTTTAGAGACATTT
1 TTAATTTTGTTATTATTTTAAAGACATTT
97722200 AATTATTAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.29, C:0.03, G:0.10, T:0.58
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGACATTTG
Found at i:97729271 original size:25 final size:25
Alignment explanation
Indices: 97729243--97729297 Score: 110
Period size: 25 Copynumber: 2.2 Consensus size: 25
97729233 TTATTTGTTT
97729243 GCTTATGACTTACTAAGCTATGATA
1 GCTTATGACTTACTAAGCTATGATA
97729268 GCTTATGACTTACTAAGCTATGATA
1 GCTTATGACTTACTAAGCTATGATA
97729293 GCTTA
1 GCTTA
97729298 ATGTGTGTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.36
Consensus pattern (25 bp):
GCTTATGACTTACTAAGCTATGATA
Found at i:97730699 original size:27 final size:27
Alignment explanation
Indices: 97730669--97730720 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
97730659 TCAGTAACAA
*
97730669 TGGGCCT-AGCCCATTAATAGAATCATG
1 TGGGCCTAAGCCCATT-ACAGAATCATG
97730696 TGGGCCTAAGCCCATTACAGAATCA
1 TGGGCCTAAGCCCATTACAGAATCA
97730721 GTATCAGATG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 15 0.65
28 8 0.35
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (27 bp):
TGGGCCTAAGCCCATTACAGAATCATG
Found at i:97731461 original size:18 final size:17
Alignment explanation
Indices: 97731431--97731473 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
97731421 AATCCGTGTG
* *
97731431 GGGCCCACGAGCCTATT
1 GGGCCCACCAGCCCATT
97731448 GGGCCCACACAGCCCATT
1 GGGCCCAC-CAGCCCATT
97731466 GAGGCCCA
1 G-GGCCCA
97731474 TTGAGGCCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 8 0.36
18 8 0.36
19 6 0.27
ACGTcount: A:0.21, C:0.40, G:0.28, T:0.12
Consensus pattern (17 bp):
GGGCCCACCAGCCCATT
Found at i:97731585 original size:10 final size:9
Alignment explanation
Indices: 97731556--97731590 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
97731546 TTACACAAGC
*
97731556 GGGCCCATG
1 GGGCCCATT
97731565 GGGCCCATT
1 GGGCCCATT
97731574 GGGCCCATT
1 GGGCCCATT
*
97731583 TGGCCCAT
1 GGGCCCAT
97731591 CGAGGCCCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.11, C:0.34, G:0.34, T:0.20
Consensus pattern (9 bp):
GGGCCCATT
Found at i:97748027 original size:20 final size:20
Alignment explanation
Indices: 97748002--97748098 Score: 79
Period size: 20 Copynumber: 4.8 Consensus size: 20
97747992 TGACGTGCAG
* *
97748002 ACAGGGGCATCGAAGTGTAG
1 ACAGGGGCACCGAAGTGTAA
* * *
97748022 ATAGGGGCA-CAAATGTGCAA
1 ACAGGGGCACCGAA-GTGTAA
* **
97748042 ACAGGGGCACCGTAGTGCGA
1 ACAGGGGCACCGAAGTGTAA
* * *
97748062 ATAGGGACATCGAAGTGTAA
1 ACAGGGGCACCGAAGTGTAA
97748082 ACAGGGGCACCGAAGTG
1 ACAGGGGCACCGAAGTG
97748099 CAAATCTCGT
Statistics
Matches: 58, Mismatches: 17, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
19 3 0.05
20 53 0.91
21 2 0.03
ACGTcount: A:0.33, C:0.18, G:0.36, T:0.13
Consensus pattern (20 bp):
ACAGGGGCACCGAAGTGTAA
Found at i:97748066 original size:40 final size:41
Alignment explanation
Indices: 97747996--97748099 Score: 115
Period size: 40 Copynumber: 2.6 Consensus size: 41
97747986 GGGTATTGAC
* * * *
97747996 GTGCAGACAGGGGCATCGAAGTG-TAGATAGGGGCA-CAAA
1 GTGCAAACAGGGGCACCGAAGTGCGAGATAGGGACATCAAA
* *
97748035 TGTGCAAACAGGGGCACCGTAGTGCGA-ATAGGGACATCGAA
1 -GTGCAAACAGGGGCACCGAAGTGCGAGATAGGGACATCAAA
*
97748076 GTGTAAACAGGGGCACCGAAGTGC
1 GTGCAAACAGGGGCACCGAAGTGC
97748100 AAATCTCGTA
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
40 50 0.93
41 4 0.07
ACGTcount: A:0.32, C:0.18, G:0.37, T:0.13
Consensus pattern (41 bp):
GTGCAAACAGGGGCACCGAAGTGCGAGATAGGGACATCAAA
Found at i:97756836 original size:43 final size:43
Alignment explanation
Indices: 97756687--97756856 Score: 152
Period size: 43 Copynumber: 4.0 Consensus size: 43
97756677 TAGGAATCCA
* *
97756687 ATATGTGATTTCGTGTAAGACCAC-GTCTGGGACATTGGCATC-
1 ATATTTGATTACGTGTAAGACC-CTGTCTGGGACATTGGCATCG
* * * *
97756729 A-ATTTGAGATTTATGTGTAAGACCATGTTTGGGACATTGGCATTG
1 ATATTT--GA-TTACGTGTAAGACCCTGTCTGGGACATTGGCATCG
* * *
97756774 -TATATGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCG
1 ATATTTGATTACGTGTAAGACCCTGTCTGGGACATTGGCATCG
* **
97756816 ATATTTGATTACATGTAAGA-CCTCGTCTGGGATGTTGGCAT
1 ATATTTGATTACGTGTAAGACCCT-GTCTGGGACATTGGCAT
97756857 TTTACAAGCT
Statistics
Matches: 101, Mismatches: 19, Indels: 15
0.75 0.14 0.11
Matches are distributed among these distances:
41 3 0.03
42 33 0.33
43 34 0.34
44 28 0.28
45 3 0.03
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.34
Consensus pattern (43 bp):
ATATTTGATTACGTGTAAGACCCTGTCTGGGACATTGGCATCG
Found at i:97756871 original size:86 final size:85
Alignment explanation
Indices: 97756693--97756864 Score: 190
Period size: 86 Copynumber: 2.0 Consensus size: 85
97756683 TCCAATATGT
* ** *
97756693 GATTTCGTGTAAGACCACGTCTGGGACATTGGCATCAATTTGAGATTTATGTGTAAGACCATGTT
1 GATTTCGTGTAAGACCACGTCTGGGACAGTGGCATCAATTT-AGATTTACATGTAAGACCATGTC
* *
97756758 TGGGACATTGGCATTGTATAT
65 TGGGACATTGGCATTGTACAA
97756779 GATTTCGTGTAAGACC-CTGTCTGGGACAGTGGCATCGATATTT-GA-TTACATGTAAGACC-TC
1 GATTTCGTGTAAGACCAC-GTCTGGGACAGTGGCATC-A-ATTTAGATTTACATGTAAGACCAT-
** *
97756840 GTCTGGGATGTTGGCATTTTACAA
62 GTCTGGGACATTGGCATTGTACAA
97756864 G
1 G
97756865 CTTTTCGAGC
Statistics
Matches: 73, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
84 1 0.01
85 32 0.44
86 35 0.48
87 1 0.01
88 4 0.05
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (85 bp):
GATTTCGTGTAAGACCACGTCTGGGACAGTGGCATCAATTTAGATTTACATGTAAGACCATGTCT
GGGACATTGGCATTGTACAA
Found at i:97764722 original size:12 final size:12
Alignment explanation
Indices: 97764705--97764736 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
97764695 GGCCACACGC
97764705 CCGTGTGCTAGG
1 CCGTGTGCTAGG
97764717 CCGTGTGCTAGG
1 CCGTGTGCTAGG
97764729 CCGTGTGC
1 CCGTGTGC
97764737 CAATTAAGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.06, C:0.28, G:0.41, T:0.25
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:97775508 original size:923 final size:925
Alignment explanation
Indices: 97772853--97775629 Score: 5319
Period size: 924 Copynumber: 3.0 Consensus size: 925
97772843 TAAATTTTAA
*
97772853 TCTGAACATAACAATCATAATTAAAATAAATAAATATAATAATGTTTTAACTGAAAATTATAATT
1 TCTGAACATAATAATCATAATTAAAATAAATAAATATAATAATGTTTTAACTGAAAATTATAATT
97772918 ACATTAATTATAATAAAGAATTCAGTAAACTATATTTATTTAAATTTATATACGAACCAAATTCA
66 ACATTAATTATAATAAAGAATTCAGTAAACTATATTTATTTAAATTTATATACGAACCAAATTCA
*
97772983 TATATTAATAGAATTATGTTCTCCTTATGTGTACAACATCCTTGTACATATAATATGTTTGATAT
131 TATATTAATAGAATTATGTTCTCCTTATGTGTACAACATCCTTGTACATATAATATGTTCGATAT
97773048 TTGATTGCCCAATTAAATTAATTCTATAATTAATTTAATTCATGTGACAACCAAACACAATACCA
196 TTGATTGCCCAATTAAATTAATTCTATAATTAATTTAATTCATGTGACAACCAAACACAATACCA
97773113 ACTATGTTTTATTCCATTCATTTCAATCATAGGGTGTGACCTTGTAGATTCTTGTAACGTTAGCA
261 ACTATGTTTTATTCCATTCATTTCAATCATAGGGTGTGACCTTGTAGATTCTTGTAACGTTAGCA
97773178 GCAATACTAGAATGATTCTAATGTTACAAACAATTAGTGGCATCTAGTAATGCATCATTGCTACC
326 GCAATACTAGAATGATTCTAATGTTACAAACAATTAGTGGCATCTAGTAATGCATCATTGCTACC
97773243 TAAGTTACAAGAAGTCATGATTCGACATAACCTTTTGTGATTAATCTTTTATGCATTAATCCTTC
391 TAAGTTACAAGAAGTCATGATTCGACATAACCTTTTGTGATTAATCTTTTATGCATTAATCCTTC
97773308 AGTCCTTTATCTCTGGAATGGACACAAGTCATGGAATAGTCACACTTGCATAGTCCATCCCATGT
456 AGTCCTTTATCTCTGGAATGGACACAAGTCATGGAATAGTCACACTTGCATAGTCCATCCCATGT
97773373 TTCTTGATACCTTGAGTAGACTCTGATACATAAATAAGTATGACATCTCATATCAACTTATTTGA
521 TTCTTGATACCTTGAGTAGACTCTGATACATAAATAAGTATGACATCTCATATCAACTTATTTGA
97773438 GCATGACCATGCATTTCTAGTCTCACTAAATCAAGTGGCCTAAGATATTACTCCTATTATGTAAG
586 GCATGACCATGCATTTCTAGTCTCACTAAATCAAGTGGCCTAAGATATTACTCCTATTATGTAAG
97773503 AGGGACTTATCCTGTATTGATCAACCATATCCTTCTGCATAGATTGTGGTATATCCAACATCAGC
651 AGGGACTTATCCTGTATTGATCAACCATATCCTTCTGCATAGATTGTGGTATATCCAACATCAGC
97773568 CTTTATAAATCAACTAGTTATGGTGTATGTTTGACTGTATCAAAATATACAACTCACGATGTTGG
716 CTTTATAAATCAACTAGTTATGGTGTATGTTTGACTGTATCAAAATATACAACTCACGATGTTGG
97773633 GATAATGATAATCTCAAGTCTAAGGATCATATACGTATTAATCACTATGAGTAATGTTGTGACAA
781 GATAATGATAATCTCAAGTCTAAGGATCATATACGTATTAATCACTATGAGTAATGTTGTGACAA
* *
97773698 TTACATAATAATCCAAGAAACATACTCATAGCGGGTCAGTCCAATATGTTATTCTCTAACACACA
846 TTACATAATAATCCAAGAAACATACTCATAGCGGGTCAGTCTAATATGTTGTTCTCTAACACACA
97773763 TATTCATGCATTGAT
911 TATTCATGCATTGAT
97773778 TCTGAACATAATAATCATAATTAAAATAAATAAATATAATAATGTTTTAACTGAAAATTATAATT
1 TCTGAACATAATAATCATAATTAAAATAAATAAATATAATAATGTTTTAACTGAAAATTATAATT
97773843 ACATTAATTATAATAAAGAATTCAGTAAACTATATTTATTTAAATTTATATACGAACCAAATTCA
66 ACATTAATTATAATAAAGAATTCAGTAAACTATATTTATTTAAATTTATATACGAACCAAATTCA
* *
97773908 TATATTAATAGAATAATGGTCTCCTTATGTGTACAACATCCTTGTACATATAATATGTTCGATAT
131 TATATTAATAGAATTATGTTCTCCTTATGTGTACAACATCCTTGTACATATAATATGTTCGATAT
97773973 TTGATTGCCCAATTAAATTAATTCTATAATTAATTTAATTCATGTGACAACCAAACACAATACCA
196 TTGATTGCCCAATTAAATTAATTCTATAATTAATTTAATTCATGTGACAACCAAACACAATACCA
97774038 ACTATGTTTTATTCCATTCATTTCAATCATAGGGTGTGACCTTGTAGATTCTTGTAACGTTAGCA
261 ACTATGTTTTATTCCATTCATTTCAATCATAGGGTGTGACCTTGTAGATTCTTGTAACGTTAGCA
97774103 GCAATACTAGAATGATTCTAATGTTACAAACAATTAGTGGCATCTAGTAATGCATCATTGCTACC
326 GCAATACTAGAATGATTCTAATGTTACAAACAATTAGTGGCATCTAGTAATGCATCATTGCTACC
97774168 TAAGTTACAAGAAGTCATGATTCGACATAACCTTTTGTGATTAATCTTTTATGCATTAATCCTTC
391 TAAGTTACAAGAAGTCATGATTCGACATAACCTTTTGTGATTAATCTTTTATGCATTAATCCTTC
97774233 AGTCCTTTATCTCTGGAATGGACACAAGTCATGGAATAGTCACACTTGCATAGTCCATCCCATGT
456 AGTCCTTTATCTCTGGAATGGACACAAGTCATGGAATAGTCACACTTGCATAGTCCATCCCATGT
* *
97774298 TTCTTGATACCCTGAGTAGACTATGAT--ATCAAATAAGTATGACATCTCATATCAACTTATTTG
521 TTCTTGATACCTTGAGTAGACTCTGATACAT-AAATAAGTATGACATCTCATATCAACTTATTTG
* * * *
97774361 AGCATGGCCATGCATTTCTAGTCTCACTCAATCAAGTGGCCTAAGATATTACTCATATTATGTAG
585 AGCATGACCATGCATTTCTAGTCTCACTAAATCAAGTGGCCTAAGATATTACTCCTATTATGTAA
* * * *
97774426 GAGGGACTTATCCTATATTGATCAACCATATCCCTCTACATAGATTGTGATATATCCAACATCAG
650 GAGGGACTTATCCTGTATTGATCAACCATATCCTTCTGCATAGATTGTGGTATATCCAACATCAG
*
97774491 CCTTTATAAATCAACCAGTTATGGTGTATGTTTGACTGTATCAAAATATACAACTCACGATGTTG
715 CCTTTATAAATCAACTAGTTATGGTGTATGTTTGACTGTATCAAAATATACAACTCACGATGTTG
* * *
97774556 GGATAATGATGATCTCAAGTCTGAGGATCATATACATATTAATCACTATGAGTAATGTTGTGACA
780 GGATAATGATAATCTCAAGTCTAAGGATCATATACGTATTAATCACTATGAGTAATGTTGTGACA
97774621 ATTACATAATAATCCAAGAAACATACTCATAGCGGGTCAGTCTAATATGTTGTTCTCTAACACAC
845 ATTACATAATAATCCAAGAAACATACTCATAGCGGGTCAGTCTAATATGTTGTTCTCTAACACAC
97774686 ATATTCATGCATTGAT
910 ATATTCATGCATTGAT
97774702 TCTGAACATAATAATCATAATTAAAATAAATAAATATAATAATGTTTTAACTGAAAATTATAATT
1 TCTGAACATAATAATCATAATTAAAATAAATAAATATAATAATGTTTTAACTGAAAATTATAATT
97774767 ACATTAATTATAATAAAGAATTCAGTAAACTATATTTATTTAAATTTATATACGAACCAAATTCA
66 ACATTAATTATAATAAAGAATTCAGTAAACTATATTTATTTAAATTTATATACGAACCAAATTCA
97774832 TATATTAATAGAATTATGTTCTCCTTATGTGTACAACATCCTTGTACATATAATATGTTCGATAT
131 TATATTAATAGAATTATGTTCTCCTTATGTGTACAACATCCTTGTACATATAATATGTTCGATAT
97774897 TTGATTGCCCAATTAAATTAATTCTATAATTAATTTAATTCATGTGACAACCAAACACAATACCA
196 TTGATTGCCCAATTAAATTAATTCTATAATTAATTTAATTCATGTGACAACCAAACACAATACCA
97774962 ACTATGTTTTATTCCATTCATTTCAA-CATAGGGTGTGACCTTGTAGATTCTTGTAACGTTAGCA
261 ACTATGTTTTATTCCATTCATTTCAATCATAGGGTGTGACCTTGTAGATTCTTGTAACGTTAGCA
*
97775026 GTAATACTAGAATGATTCTAATGTTACAAACAATTAGTGGCATCTAGTAATGCATCATTGCTACC
326 GCAATACTAGAATGATTCTAATGTTACAAACAATTAGTGGCATCTAGTAATGCATCATTGCTACC
97775091 TAAGTTACAAGAAGTCATGATTCGACATAACCTTTTGTGATTAATCTTTTATGCATTAATCCTT-
391 TAAGTTACAAGAAGTCATGATTCGACATAACCTTTTGTGATTAATCTTTTATGCATTAATCCTTC
*
97775155 AATCCTTTATCTCTGGAATGGACACAAGTCATGGAATAGTCACACTTGCATAGTCCATCCCATGT
456 AGTCCTTTATCTCTGGAATGGACACAAGTCATGGAATAGTCACACTTGCATAGTCCATCCCATGT
97775220 TTCTTGATACCTTGAGTAGACTCTGATACATAAATAAGTATGACATCTCATATCAACTTATTTGA
521 TTCTTGATACCTTGAGTAGACTCTGATACATAAATAAGTATGACATCTCATATCAACTTATTTGA
97775285 GCATGACCATGCATTTCTAGTCTCACTAAATCAAGTGGCCTAAGATATTACTCCTATTATGTAAG
586 GCATGACCATGCATTTCTAGTCTCACTAAATCAAGTGGCCTAAGATATTACTCCTATTATGTAAG
97775350 AGGGACTTATCCTGTATTGATCAACCATATCCTTCTGCATAGATTGTGGTATATCCAACATCAGC
651 AGGGACTTATCCTGTATTGATCAACCATATCCTTCTGCATAGATTGTGGTATATCCAACATCAGC
97775415 CTTTATAAATCAACTAGTTATGGTGTATGTTTGACTGTATCAAAATATACAACTCACGATGTTGG
716 CTTTATAAATCAACTAGTTATGGTGTATGTTTGACTGTATCAAAATATACAACTCACGATGTTGG
97775480 GATAATGATAATCTCAAGTCTAAGGATCATATACGTATTAATCACTATGAGTAATGTTGTGACAA
781 GATAATGATAATCTCAAGTCTAAGGATCATATACGTATTAATCACTATGAGTAATGTTGTGACAA
97775545 TTACATAATAATCCAAGAAACATACTCATAGCGGGTCAGTCTAATATGTTGTTCTCTAACACACA
846 TTACATAATAATCCAAGAAACATACTCATAGCGGGTCAGTCTAATATGTTGTTCTCTAACACACA
97775610 TATTCATGCATTGAT
911 TATTCATGCATTGAT
97775625 TCTGA
1 TCTGA
97775630 CACTCCATAT
Statistics
Matches: 1811, Mismatches: 38, Indels: 8
0.98 0.02 0.00
Matches are distributed among these distances:
922 89 0.05
923 535 0.30
924 646 0.36
925 541 0.30
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (925 bp):
TCTGAACATAATAATCATAATTAAAATAAATAAATATAATAATGTTTTAACTGAAAATTATAATT
ACATTAATTATAATAAAGAATTCAGTAAACTATATTTATTTAAATTTATATACGAACCAAATTCA
TATATTAATAGAATTATGTTCTCCTTATGTGTACAACATCCTTGTACATATAATATGTTCGATAT
TTGATTGCCCAATTAAATTAATTCTATAATTAATTTAATTCATGTGACAACCAAACACAATACCA
ACTATGTTTTATTCCATTCATTTCAATCATAGGGTGTGACCTTGTAGATTCTTGTAACGTTAGCA
GCAATACTAGAATGATTCTAATGTTACAAACAATTAGTGGCATCTAGTAATGCATCATTGCTACC
TAAGTTACAAGAAGTCATGATTCGACATAACCTTTTGTGATTAATCTTTTATGCATTAATCCTTC
AGTCCTTTATCTCTGGAATGGACACAAGTCATGGAATAGTCACACTTGCATAGTCCATCCCATGT
TTCTTGATACCTTGAGTAGACTCTGATACATAAATAAGTATGACATCTCATATCAACTTATTTGA
GCATGACCATGCATTTCTAGTCTCACTAAATCAAGTGGCCTAAGATATTACTCCTATTATGTAAG
AGGGACTTATCCTGTATTGATCAACCATATCCTTCTGCATAGATTGTGGTATATCCAACATCAGC
CTTTATAAATCAACTAGTTATGGTGTATGTTTGACTGTATCAAAATATACAACTCACGATGTTGG
GATAATGATAATCTCAAGTCTAAGGATCATATACGTATTAATCACTATGAGTAATGTTGTGACAA
TTACATAATAATCCAAGAAACATACTCATAGCGGGTCAGTCTAATATGTTGTTCTCTAACACACA
TATTCATGCATTGAT
Found at i:97776537 original size:26 final size:25
Alignment explanation
Indices: 97776428--97776537 Score: 95
Period size: 24 Copynumber: 4.4 Consensus size: 25
97776418 TTAAGCTATG
* * *
97776428 ATCAGTAAGCTCCTCCTGAGCTGATAG
1 ATCAGTAAGCTCTTAC-GAGCTGA-AA
*
97776455 AT-AGTAAGCTC-TATTGAGCTG-AA
1 ATCAGTAAGCTCTTA-CGAGCTGAAA
* *
97776478 A-CGGTAAGCTCTGACGAGCTGAAA
1 ATCAGTAAGCTCTTACGAGCTGAAA
97776502 A-CAGTAAGCTCTTACGAGCTGATAA
1 ATCAGTAAGCTCTTACGAGCTGA-AA
97776527 ATCAGTAAGCT
1 ATCAGTAAGCT
97776538 TATATGAGCT
Statistics
Matches: 69, Mismatches: 8, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
23 16 0.23
24 23 0.33
25 10 0.14
26 18 0.26
27 2 0.03
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.25
Consensus pattern (25 bp):
ATCAGTAAGCTCTTACGAGCTGAAA
Found at i:97776546 original size:26 final size:24
Alignment explanation
Indices: 97776430--97776548 Score: 91
Period size: 26 Copynumber: 4.8 Consensus size: 24
97776420 AAGCTATGAT
** *
97776430 CAGTAAGCTCCTCCTGAGCTGATAGA
1 CAGTAAGCT-CTTATGAGCTGA-AAA
*
97776456 TAGTAAGCTC-TATTGAGCTG-AAA
1 CAGTAAGCTCTTA-TGAGCTGAAAA
* * *
97776479 CGGTAAGCTCTGACGAGCTGAAAA
1 CAGTAAGCTCTTATGAGCTGAAAA
*
97776503 CAGTAAGCTCTTACGAGCTGATAAA
1 CAGTAAGCTCTTATGAGCTGA-AAA
97776528 TCAGTAAGCT-TATATGAGCTG
1 -CAGTAAGCTCT-TATGAGCTG
97776549 CGGTGAGTCC
Statistics
Matches: 76, Mismatches: 11, Indels: 12
0.77 0.11 0.12
Matches are distributed among these distances:
23 16 0.21
24 23 0.30
25 12 0.16
26 25 0.33
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (24 bp):
CAGTAAGCTCTTATGAGCTGAAAA
Found at i:97781106 original size:21 final size:23
Alignment explanation
Indices: 97781091--97781136 Score: 74
Period size: 25 Copynumber: 1.9 Consensus size: 23
97781081 ATTGAATTGT
97781091 TTCATATTCTTTTTGAATAGGTAAA
1 TTCATATTCTTTTTGAATAGGT--A
97781116 TTCATATTCTTTTTGAATAGG
1 TTCATATTCTTTTTGAATAGG
97781137 AAAACTCCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.28, C:0.09, G:0.13, T:0.50
Consensus pattern (23 bp):
TTCATATTCTTTTTGAATAGGTA
Found at i:97781151 original size:24 final size:25
Alignment explanation
Indices: 97781092--97781152 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 25
97781082 TTGAATTGTT
* * *
97781092 TCATATTCTTTTTGAATAGGTAAAT
1 TCATATCCTTTTTGAATAGGAAAAC
*
97781117 TCATATTCTTTTTGAATAGGAAAAC
1 TCATATCCTTTTTGAATAGGAAAAC
*
97781142 TCCT-TCCTTTT
1 TCATATCCTTTT
97781153 GTTTTTATAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
24 6 0.19
25 26 0.81
ACGTcount: A:0.28, C:0.15, G:0.10, T:0.48
Consensus pattern (25 bp):
TCATATCCTTTTTGAATAGGAAAAC
Found at i:97781751 original size:15 final size:15
Alignment explanation
Indices: 97781725--97781760 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
97781715 AAAGGAAAAT
*
97781725 AATTTAAAAACTTAA
1 AATTTGAAAACTTAA
*
97781740 ATTTTGAAAACTTAA
1 AATTTGAAAACTTAA
97781755 AATTTG
1 AATTTG
97781761 GAGAAACGAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.39
Consensus pattern (15 bp):
AATTTGAAAACTTAA
Found at i:97782120 original size:23 final size:23
Alignment explanation
Indices: 97781993--97782112 Score: 129
Period size: 23 Copynumber: 5.3 Consensus size: 23
97781983 AACTATAGAA
* *
97781993 AATATTCACTATTCATGCTAGAG
1 AATATTTACTATTCATGCCAGAG
*
97782016 AATATTTACTGTTCATGCCAGAG
1 AATATTTACTATTCATGCCAGAG
* * *
97782039 AAT-CTTAATGATT-TTGCCAGA-
1 AATATTTACT-ATTCATGCCAGAG
* *
97782060 TATTTTTACTATTCATGCCAGAG
1 AATATTTACTATTCATGCCAGAG
*
97782083 AATATTTACTATTCATGCTAGAG
1 AATATTTACTATTCATGCCAGAG
97782106 AATATTT
1 AATATTT
97782113 GTTGTTCACT
Statistics
Matches: 79, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
21 5 0.06
22 22 0.28
23 52 0.66
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39
Consensus pattern (23 bp):
AATATTTACTATTCATGCCAGAG
Found at i:97788958 original size:48 final size:44
Alignment explanation
Indices: 97788869--97788987 Score: 116
Period size: 48 Copynumber: 2.7 Consensus size: 44
97788859 GTCTCATATT
* * * *
97788869 GATGCCATGTCCCAGACATGGTATTACACGAAATCACATATTGA
1 GATGCCATATCCCAGATATGGTCTTACACGAAATCAAATATTGA
* **
97788913 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCAAATATTGA
1 -G---ATGCCATATCCCAGATATGGTCTTACACGAAATCAAATATTGA
*
97788961 G--GCCATATCCTAGATATGGTCTTACAC
1 GATGCCATATCCCAGATATGGTCTTACAC
97788988 AAAACCGCAC
Statistics
Matches: 62, Mismatches: 9, Indels: 9
0.77 0.11 0.11
Matches are distributed among these distances:
42 24 0.39
45 1 0.02
47 1 0.02
48 36 0.58
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (44 bp):
GATGCCATATCCCAGATATGGTCTTACACGAAATCAAATATTGA
Found at i:97791226 original size:30 final size:30
Alignment explanation
Indices: 97791192--97791248 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
97791182 ATCTTTCAGC
*
97791192 TGTTTAAAT-TTTGTTTAAAGATGTTTGGTT
1 TGTTTAAATATTTATTT-AAGATGTTTGGTT
*
97791222 TGTTTAATTATTTATTTAAGATGTTTG
1 TGTTTAAATATTTATTTAAGATGTTTG
97791249 AGACTTTGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 18 0.75
31 6 0.25
ACGTcount: A:0.25, C:0.00, G:0.18, T:0.58
Consensus pattern (30 bp):
TGTTTAAATATTTATTTAAGATGTTTGGTT
Found at i:97792377 original size:16 final size:17
Alignment explanation
Indices: 97792358--97792390 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
97792348 TGTCGATTCA
97792358 TGACATTG-TCTTCTCT
1 TGACATTGTTCTTCTCT
97792374 TGACATTGTTCTTCTCT
1 TGACATTGTTCTTCTCT
97792391 GCACTAGCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.12, C:0.24, G:0.12, T:0.52
Consensus pattern (17 bp):
TGACATTGTTCTTCTCT
Found at i:97800320 original size:61 final size:58
Alignment explanation
Indices: 97800255--97800370 Score: 160
Period size: 61 Copynumber: 1.9 Consensus size: 58
97800245 AGTGATTATC
** * * *
97800255 TTAATATTAAATTTAATTTGATATTTATTTTGTAGATAAGTATTCTATTAATTTAATAGAT
1 TTAATATTAAATTTAACCTAATATTTA-TCT-T-GATAAGTATTATATTAATTTAATAGAT
97800316 TTAATATTAAATTTAACCTAATATTTATCTTGATAAGTATTATATTAATTTAATA
1 TTAATATTAAATTTAACCTAATATTTATCTTGATAAGTATTATATTAATTTAATA
97800371 TTAAGTGATT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
58 23 0.46
59 1 0.02
60 2 0.04
61 24 0.48
ACGTcount: A:0.40, C:0.03, G:0.06, T:0.51
Consensus pattern (58 bp):
TTAATATTAAATTTAACCTAATATTTATCTTGATAAGTATTATATTAATTTAATAGAT
Found at i:97805878 original size:95 final size:95
Alignment explanation
Indices: 97805715--97805937 Score: 292
Period size: 95 Copynumber: 2.3 Consensus size: 95
97805705 ATGAGATCAC
* * *
97805715 GTGTAAGACCACGTCTGGGACATGGCATCGACGTTGATATGTGTGCTAGTGTAAGACCATGTGTG
1 GTGTAAGACCATGTCAGGGACATGGCATCGAC-TTGATATGTGTGCCAGTGTAAGACCATGTGTG
* **
97805780 GGACATGGCAT-ATGCTTTGATA-GTGTGCCA
65 GGACATGGCATCA-ACAATGATATGTGTGCCA
* *
97805810 GTGTAAGACCATGTCAGGGACATGACATCAGTA-TTGATATGTGTGCCAGTGTAAGACCATGTTT
1 GTGTAAGACCATGTCAGGGACATGGCATC-G-ACTTGATATGTGTGCCAGTGTAAGACCATGTGT
*
97805874 GGGACATGGCATCAACAATGATATGTGTGCTA
64 GGGACATGGCATCAACAATGATATGTGTGCCA
97805906 GTGTAAGACCATGTCTA-GGACATGGCATCGAC
1 GTGTAAGACCATGTC-AGGGACATGGCATCGAC
97805938 ACCGATATGA
Statistics
Matches: 112, Mismatches: 10, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
94 1 0.01
95 74 0.66
96 35 0.31
97 2 0.02
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.27
Consensus pattern (95 bp):
GTGTAAGACCATGTCAGGGACATGGCATCGACTTGATATGTGTGCCAGTGTAAGACCATGTGTGG
GACATGGCATCAACAATGATATGTGTGCCA
Found at i:97805946 original size:48 final size:48
Alignment explanation
Indices: 97805715--97805938 Score: 283
Period size: 48 Copynumber: 4.7 Consensus size: 48
97805705 ATGAGATCAC
* * *
97805715 GTGTAAGACCACGTCTGGGACATGGCATCGACGTTGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACATTGATATGTGTGCCA
* * *
97805763 GTGTAAGACCATGTGTGGGACATGGCATATG-CTTTGATA-GTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCAT-CGACATTGATATGTGTGCCA
* * *
97805810 GTGTAAGACCATGTCAGGGACATGACATC-AGTATTGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGA-CATTGATATGTGTGCCA
* * * *
97805858 GTGTAAGACCATGTTTGGGACATGGCATCAACAATGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACATTGATATGTGTGCCA
*
97805906 GTGTAAGACCATGTCTAGGACATGGCATCGACA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACA
97805939 CCGATATGAG
Statistics
Matches: 151, Mismatches: 20, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
47 38 0.25
48 111 0.74
49 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGACATTGATATGTGTGCCA
Found at i:97805961 original size:48 final size:48
Alignment explanation
Indices: 97805861--97805965 Score: 120
Period size: 48 Copynumber: 2.2 Consensus size: 48
97805851 TGTGCCAGTG
* * * * ** *
97805861 TAAGACCATGTTTGGGACATGGCATCAACAATGATATGTGTGCTAGTG
1 TAAGACCATGTCTAGGACATGGCATCAACAACGATATGAGACCTAGTA
* * *
97805909 TAAGACCATGTCTAGGACATGGCATCGACACCGATATGAGACCTCGTA
1 TAAGACCATGTCTAGGACATGGCATCAACAACGATATGAGACCTAGTA
97805957 TAAGACCAT
1 TAAGACCAT
97805966 ATTTGGGATA
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (48 bp):
TAAGACCATGTCTAGGACATGGCATCAACAACGATATGAGACCTAGTA
Found at i:97808763 original size:24 final size:24
Alignment explanation
Indices: 97808736--97808781 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
97808726 GAAGGGTTTT
97808736 TGAAGAGA-GAAAGTGA-GAGAGAAG
1 TGAAGA-ATGAAAG-GATGAGAGAAG
97808760 TGAAGAATGAAAGGATGAGAGA
1 TGAAGAATGAAAGGATGAGAGA
97808782 TGTGTTTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 3 0.15
24 17 0.85
ACGTcount: A:0.50, C:0.00, G:0.39, T:0.11
Consensus pattern (24 bp):
TGAAGAATGAAAGGATGAGAGAAG
Found at i:97809457 original size:22 final size:22
Alignment explanation
Indices: 97809429--97809475 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
97809419 CCGAAACTGC
97809429 ATGAATTTGAGTTAAAAAGGGT
1 ATGAATTTGAGTTAAAAAGGGT
97809451 ATGAATTTGAGTTAAAAAGGGT
1 ATGAATTTGAGTTAAAAAGGGT
97809473 ATG
1 ATG
97809476 TTAATATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.40, C:0.00, G:0.28, T:0.32
Consensus pattern (22 bp):
ATGAATTTGAGTTAAAAAGGGT
Found at i:97810495 original size:39 final size:39
Alignment explanation
Indices: 97810452--97810530 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
97810442 TGGTATGATT
97810452 TGCATGTTTATTAAGAGTACATTTATATCATAATTCAAC
1 TGCATGTTTATTAAGAGTACATTTATATCATAATTCAAC
97810491 TGCATGTTTATTAAGAGTACATTTATATCATAATTCAAC
1 TGCATGTTTATTAAGAGTACATTTATATCATAATTCAAC
97810530 T
1 T
97810531 AACATACAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (39 bp):
TGCATGTTTATTAAGAGTACATTTATATCATAATTCAAC
Found at i:97812024 original size:3 final size:3
Alignment explanation
Indices: 97812009--97812046 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
97811999 CTTTGTTGGA
*
97812009 TCT TCT TCG TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
97812047 GGGATCCTTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.00, C:0.34, G:0.03, T:0.63
Consensus pattern (3 bp):
TCT
Found at i:97813035 original size:60 final size:60
Alignment explanation
Indices: 97812927--97813040 Score: 131
Period size: 60 Copynumber: 1.9 Consensus size: 60
97812917 ACAAATTAAA
*
97812927 TGTAACATCCCAAAATAAGGCCTAAACGGAATAGTGCTTGCGAAACCACGAATCTAATAT
1 TGTAACATCCCAAAATAAGGCCTAAACGGAATAGTGCTTGCGAAACCACAAATCTAATAT
* * * * * * **
97812987 TGTAATATCCCGAATTAGGGCCTAATA-GGAATAGTGGTTTCGTGACCACAAATC
1 TGTAACATCCCAAAATAAGGCCTAA-ACGGAATAGTGCTTGCGAAACCACAAATC
97813041 CGAGATAGAA
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
60 43 0.98
61 1 0.02
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (60 bp):
TGTAACATCCCAAAATAAGGCCTAAACGGAATAGTGCTTGCGAAACCACAAATCTAATAT
Found at i:97834964 original size:16 final size:15
Alignment explanation
Indices: 97834939--97834972 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
97834929 AAAGTTGATA
*
97834939 ATAATTAATATATATT
1 ATAATAAATATA-ATT
97834955 ATAATAAATATAATT
1 ATAATAAATATAATT
97834970 ATA
1 ATA
97834973 TATCAGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:97834972 original size:22 final size:19
Alignment explanation
Indices: 97834936--97834975 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 19
97834926 TGCAAAGTTG
97834936 ATAATAATTAATATATATT
1 ATAATAATTAATATATATT
97834955 ATAATAAATATAATTATATAT
1 ATAAT-AAT-TAA-TATATAT
97834976 CAGTTATCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.28
20 3 0.17
21 3 0.17
22 7 0.39
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
ATAATAATTAATATATATT
Found at i:97835093 original size:29 final size:29
Alignment explanation
Indices: 97835039--97835096 Score: 75
Period size: 31 Copynumber: 2.0 Consensus size: 29
97835029 TTCCTTTAAA
97835039 AATATTTAAAAAAAGAGACATCTAATTTTT
1 AATATTTAAAAAAAGAGACA-CTAATTTTT
97835069 AATATTTATAAAAAAGCA-AC-CTAATTTT
1 AATATTTA-AAAAAAG-AGACACTAATTTT
97835097 GCAAAGACTT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
29 8 0.31
30 8 0.31
31 9 0.35
32 1 0.04
ACGTcount: A:0.50, C:0.09, G:0.05, T:0.36
Consensus pattern (29 bp):
AATATTTAAAAAAAGAGACACTAATTTTT
Found at i:97857954 original size:28 final size:28
Alignment explanation
Indices: 97857902--97857955 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
97857892 AATATTAATA
* * * *
97857902 ATGGCACTTGGTGTGCGGGATATTGAGT
1 ATGGCACTTAGTGTACGAGACATTGAGT
97857930 ATGGCACTTAGTGTACGAGACATTGA
1 ATGGCACTTAGTGTACGAGACATTGA
97857956 AGATGCAACG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.24, C:0.13, G:0.33, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAGACATTGAGT
Done.