Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 292 of 349
Found at i:97868214 original size:53 final size:55
Alignment explanation
Indices: 97868091--97868214 Score: 137
Period size: 53 Copynumber: 2.3 Consensus size: 55
97868081 ATTTAAGGAC
* * **
97868091 ACCATATAAGACCATGCCAAGGCATGATAATTGGTAAGGTTTCTAAGGCAAAGGT
1 ACCATGTAAGACCATGCCAAGGCATGAGAATTGGTAAGGTTAATAAGGCAAAGGT
* * * *
97868146 CCCATGAAAGACCATGCCAAGGCATG-GCATTGGTGA-GTTAATAAGGC-AAGGAT
1 ACCATGTAAGACCATGCCAAGGCATGAGAATTGGTAAGGTTAATAAGGCAAAGG-T
*
97868199 ATCATGTAAGACCATG
1 ACCATGTAAGACCATG
97868215 TTGAGACATG
Statistics
Matches: 57, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
52 4 0.07
53 23 0.40
54 7 0.12
55 23 0.40
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (55 bp):
ACCATGTAAGACCATGCCAAGGCATGAGAATTGGTAAGGTTAATAAGGCAAAGGT
Found at i:97868436 original size:18 final size:18
Alignment explanation
Indices: 97868413--97868449 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
97868403 GAAAAAGGTA
97868413 AGTATATAATGTTCATGT
1 AGTATATAATGTTCATGT
97868431 AGTATATAATGTTCATGT
1 AGTATATAATGTTCATGT
97868449 A
1 A
97868450 TGCTTGATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.35, C:0.05, G:0.16, T:0.43
Consensus pattern (18 bp):
AGTATATAATGTTCATGT
Found at i:97868516 original size:16 final size:16
Alignment explanation
Indices: 97868495--97868525 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
97868485 AGAAATTTGA
97868495 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
97868511 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
97868526 AGTGAAGACG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:97871256 original size:46 final size:44
Alignment explanation
Indices: 97871172--97871292 Score: 127
Period size: 46 Copynumber: 2.7 Consensus size: 44
97871162 GACGAGTGCT
* * *
97871172 AGTGTAAGACATGTCTAGGAGATGCATTGGCCTCGAGATGTAAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGT--GTC
* *
97871218 AGTGTAAGACATGTCTGGGACATGCATCGG-CTATGAGATGTGTT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTGTC
* *
97871262 GGTGTAAGACCATGTCCGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
97871293 ACACAGATAT
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
44 10 0.15
45 15 0.23
46 40 0.62
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.26
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTGTC
Found at i:97884687 original size:16 final size:16
Alignment explanation
Indices: 97884666--97884733 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
97884656 TTTGGTTCGC
97884666 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
97884682 TGTATTGGATTAGAAG
1 TGTATTGGATTAGAGG
97884698 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
97884714 TGTATTAGATTAGAGG
1 TGTATTGGATTAGAGG
97884730 TGTA
1 TGTA
97884734 ATAGCAAATC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.28, C:0.00, G:0.34, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:97885057 original size:157 final size:157
Alignment explanation
Indices: 97884863--97885172 Score: 548
Period size: 157 Copynumber: 2.0 Consensus size: 157
97884853 CCCTTAGCAT
*
97884863 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTATTATCAA
1 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
* *
97884928 TAATAAATATTTTAATCATATTTAAACATAATTATTATTAAACATATTTTAATTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
97884993 TTTAATAAAATTCTTAATAATTACCAG
131 TTTAATAAAATTCTTAATAATTACCAG
* * *
97885020 AAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTGATAAGATTATTAATATGAA
1 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
* *
97885085 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATACTTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
97885150 TTTAATAAAATTCTTAATAATTA
131 TTTAATAAAATTCTTAATAATTA
97885173 ATATTCTTAT
Statistics
Matches: 145, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
157 145 1.00
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.47
Consensus pattern (157 bp):
AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
TTTAATAAAATTCTTAATAATTACCAG
Found at i:97885169 original size:82 final size:81
Alignment explanation
Indices: 97884926--97885175 Score: 186
Period size: 76 Copynumber: 3.1 Consensus size: 81
97884916 TATTATTATC
* * *
97884926 AATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAACATATTTTAATTAAAATATAT
1 AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTAT-ATTAAAATATAT
97884991 AATTTAATAAAATTCTT
65 AATTTAATAAAATTCTT
* * * * *
97885008 AATAATTACCAGA-AATTT-GT--T-TTGGT-AA-ATTATTATTGTT--AT-TGTTAT-TTAAAT
1 AATAA-TA--A-ATAATTTAATCATATT--TAAACATAATTATTATTAAATATATTATATTAAAA
* * * * *
97885062 TTTGATAAGATT-AT-TAA-TATG
60 TAT-ATAA-TTTAATAAAATTCTT
97885083 AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATACTTAAAATATAT
1 AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATA-TTAAAATATAT
97885148 AATTTAATAAAATTCTT
65 AATTTAATAAAATTCTT
*
97885165 AATAATTAATA
1 AATAATAAATA
97885176 TTCTTATATG
Statistics
Matches: 121, Mismatches: 24, Indels: 46
0.63 0.13 0.24
Matches are distributed among these distances:
71 1 0.01
72 6 0.05
73 1 0.01
74 3 0.02
75 10 0.08
76 21 0.17
77 6 0.05
78 8 0.07
79 8 0.07
80 6 0.05
81 21 0.17
82 20 0.17
83 3 0.02
84 1 0.01
85 5 0.04
86 1 0.01
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.46
Consensus pattern (81 bp):
AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATATTAAAATATATA
ATTTAATAAAATTCTT
Found at i:97885246 original size:157 final size:155
Alignment explanation
Indices: 97884909--97885230 Score: 349
Period size: 157 Copynumber: 2.0 Consensus size: 155
97884899 TTAAATTTTA
* * * *
97884909 ATAAGATTATTATTATCAATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAACATA
1 ATAAGATTATGAATATGAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATA
* * * * * ** *
97884974 TTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTACCAGAAATTTGTTTTGGTAAATT
66 TTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACACAAATATGATTTACTAAATC
* * * * *
97885039 ATTATTGTTATTGTTATTTAAATTTTG
131 ATAATTATTATTGATATATAAA--TAG
* *
97885066 ATAAGATTATTAATATGAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATA
1 ATAAGATTATGAATATGAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATA
* * **
97885131 TTATACTTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCA
66 TTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACA--CAAATATG-ATTTACT-A
97885196 AATCATAATATATTATATGATACTATAAA-AG
127 AATCATAAT-TATTAT-TGATA-TATAAATAG
97885227 ATAA
1 ATAA
97885231 TTTGAAATAA
Statistics
Matches: 137, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
157 102 0.74
159 4 0.03
160 4 0.03
161 13 0.09
162 5 0.04
163 4 0.03
164 5 0.04
ACGTcount: A:0.46, C:0.05, G:0.04, T:0.45
Consensus pattern (155 bp):
ATAAGATTATGAATATGAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATA
TTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAACACAAATATGATTTACTAAATC
ATAATTATTATTGATATATAAATAG
Found at i:97886068 original size:13 final size:13
Alignment explanation
Indices: 97886050--97886079 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
97886040 CAATCAGCAA
97886050 AATTCAGAAAAAC
1 AATTCAGAAAAAC
97886063 AATTCAGAAAAAC
1 AATTCAGAAAAAC
97886076 AATT
1 AATT
97886080 ACATGACAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.60, C:0.13, G:0.07, T:0.20
Consensus pattern (13 bp):
AATTCAGAAAAAC
Found at i:97889573 original size:27 final size:28
Alignment explanation
Indices: 97889542--97889630 Score: 92
Period size: 28 Copynumber: 3.1 Consensus size: 28
97889532 TTGGGAAAAA
*
97889542 ATTAATAGGGTGTT-GGGTTAGAAATCG
1 ATTAATAGGGTGTTAGGGTTAGAAATTG
* *
97889569 ATTAACAAGGTTGATATAGGGTTAGAAATTTG
1 ATTAA-TAGGGTG-T-TAGGGTTAGAAA-TTG
*
97889601 ATTAATAGGGT-TTAGCGTTAGAAATTG
1 ATTAATAGGGTGTTAGGGTTAGAAATTG
97889628 ATT
1 ATT
97889631 GATATATTTT
Statistics
Matches: 51, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
27 11 0.22
28 16 0.31
29 2 0.04
30 1 0.02
31 14 0.27
32 7 0.14
ACGTcount: A:0.34, C:0.03, G:0.27, T:0.36
Consensus pattern (28 bp):
ATTAATAGGGTGTTAGGGTTAGAAATTG
Found at i:97889801 original size:16 final size:16
Alignment explanation
Indices: 97889777--97889807 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
97889767 TTTTTGATTT
*
97889777 TTTAGATTTAGGGTTA
1 TTTAAATTTAGGGTTA
97889793 TTTAAATTTAGGGTT
1 TTTAAATTTAGGGTT
97889808 GTCGAGATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.52
Consensus pattern (16 bp):
TTTAAATTTAGGGTTA
Found at i:97892834 original size:47 final size:46
Alignment explanation
Indices: 97892725--97892993 Score: 219
Period size: 47 Copynumber: 5.8 Consensus size: 46
97892715 TGATTTGTGC
* * * **
97892725 GCCAATGTAAGACATGTCTGGGATATGCTTCGGCACA-TTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCACAGAGATGAGA
*
97892770 GCCAGTGTAAGATCATGTCTGGGACATGGCATCGGCACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCACAGAGATGAGA
* *
97892818 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTTGACAGAGAT---A
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-C---ACAGAGATGAGA
* * * *
97892865 GCCAGTGTAAGACGTGTCTGGGACACGCATCGGCTA-AGAG-T-TGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-ACAGAGATGAGA
* * * * *
97892909 GCTAGTGTAAGACATGTCTGGGACATGCAGCAGCACGCGTATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCAC-AG-AGATGAGA
* *
97892957 GCCAATGTAAGACCATGTTTGGGACATGGCATCGGCA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA
97892994 ATATATCCCA
Statistics
Matches: 179, Mismatches: 29, Indels: 27
0.76 0.12 0.11
Matches are distributed among these distances:
42 1 0.01
43 5 0.03
44 30 0.17
45 12 0.07
46 22 0.12
47 54 0.30
48 27 0.15
49 13 0.07
50 15 0.08
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCACAGAGATGAGA
Found at i:97892931 original size:91 final size:93
Alignment explanation
Indices: 97892730--97892993 Score: 272
Period size: 93 Copynumber: 2.8 Consensus size: 93
97892720 TGTGCGCCAA
* * *
97892730 TGTAAGACATGTCTGGGATATGCTTCGGCACATTATGAGAGCCAGTGTAAGATCATGTCTGGGAC
1 TGTAAGACATGTCTGGGACATGCATCGGCACATTAAGAGAGCCAGTGTAAGATCATGTCTGGGAC
*
97892795 ATGGCATCGGCACAGAGATGAGTGCTAG
66 ATCGCATCGGCACAGAGATGAGTGCTAG
* *
97892823 TGTAAGACATGTTTGGGACATGCATCGGC-C-TTGACAGAGATAGCCAGTGTAAGA-CGTGTCTG
1 TGTAAGACATGTCTGGGACATGCATCGGCACATT-A-AGAG--AGCCAGTGTAAGATCATGTCTG
*
97892885 GGACA-CGCATCGGCTA-AGAG-T-TGTGCTAG
62 GGACATCGCATCGGC-ACAGAGATGAGTGCTAG
* * * * * * *
97892914 TGTAAGACATGTCTGGGACATGCAGCAGCACGCGTATATGAGAGCCAATGTAAGACCATGTTTGG
1 TGTAAGACATGTCTGGGACATGCATCGGCA--CAT-TAAGAGAGCCAGTGTAAGATCATGTCTGG
*
97892979 GACATGGCATCGGCA
63 GACATCGCATCGGCA
97892994 ATATATCCCA
Statistics
Matches: 144, Mismatches: 15, Indels: 24
0.79 0.08 0.13
Matches are distributed among these distances:
91 35 0.24
92 15 0.10
93 53 0.37
94 25 0.17
95 15 0.10
96 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (93 bp):
TGTAAGACATGTCTGGGACATGCATCGGCACATTAAGAGAGCCAGTGTAAGATCATGTCTGGGAC
ATCGCATCGGCACAGAGATGAGTGCTAG
Found at i:97895271 original size:27 final size:26
Alignment explanation
Indices: 97895227--97895278 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
97895217 CTCGCTGCAA
*
97895227 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
97895254 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
97895279 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:97902647 original size:47 final size:46
Alignment explanation
Indices: 97902575--97902841 Score: 204
Period size: 47 Copynumber: 5.7 Consensus size: 46
97902565 TGATTTGTGC
* * **
97902575 GCCAGTGTAAGACATGTCTAGGACATGCTTCGGCCACA-TTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-CACAGAGATGAGA
*
97902621 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCACAGAGATGAGA
* * *
97902669 GCTAGTGTAAGACATGTCTGGGACATGCATCGAC-CTAGATAGA-GATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCAC-AG--AGATGAGA
* * * * * *
97902716 GACAGTGTAAGACGTGTCTAGGACACGCATCGGCTA-AGAG-T-TGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-ACAGAGATGAGA
* * * * *
97902760 GCTATTGTAAGACATGTCTGGGACATGCATCAGCACGCGTATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCAC-AG-AGATGAGA
* *
97902808 GCCAGTGTATGACCATGTTTGGGACATGGCATCG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCG
97902842 ACAATATATC
Statistics
Matches: 171, Mismatches: 34, Indels: 28
0.73 0.15 0.12
Matches are distributed among these distances:
43 1 0.01
44 27 0.16
45 4 0.02
46 22 0.13
47 64 0.37
48 35 0.20
49 13 0.08
50 5 0.03
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCACAGAGATGAGA
Found at i:97902781 original size:91 final size:94
Alignment explanation
Indices: 97902578--97902841 Score: 256
Period size: 94 Copynumber: 2.8 Consensus size: 94
97902568 TTTGTGCGCC
* * * * *
97902578 AGTGTAAGACATGTCTAGGACATGCTTCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACATTATGAGAGACAGTGTAAGACCATGTCTAG
*
97902643 GACATGGCATCGGCACAGAGATGAGTGCT
66 GACATCGCATCGGCACAGAGATGAGTGCT
* *
97902672 AGTGTAAGACATGTCTGGGACATGCATCGACCTAGA-TA-GAGATAGACAGTGTAAGA-CGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGACC-ACATTATGAG--AGACAGTGTAAGACCATGTC
*
97902734 TAGGACA-CGCATCGGCTA-AGAG-T-TGTGCT
63 TAGGACATCGCATCGGC-ACAGAGATGAGTGCT
* * * * * *
97902763 ATTGTAAGACATGTCTGGGACATGCATC-AGCACGCGTATATGAGAGCCAGTGTATGACCATGTT
1 AGTGTAAGACATGTCTGGGACATGCATCGA-C-CACAT-TATGAGAGACAGTGTAAGACCATGTC
* *
97902827 TGGGACATGGCATCG
63 TAGGACATCGCATCG
97902842 ACAATATATC
Statistics
Matches: 140, Mismatches: 19, Indels: 22
0.77 0.10 0.12
Matches are distributed among these distances:
90 1 0.01
91 33 0.24
92 13 0.09
93 27 0.19
94 52 0.37
95 14 0.10
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACCACATTATGAGAGACAGTGTAAGACCATGTCTAG
GACATCGCATCGGCACAGAGATGAGTGCT
Found at i:97905833 original size:33 final size:31
Alignment explanation
Indices: 97905791--97905870 Score: 90
Period size: 30 Copynumber: 2.5 Consensus size: 31
97905781 TAAATTATTT
97905791 TTGTATTGGTTATTGTCTATCATGTTGTATTAAA
1 TTGT-TTGGTTATTGTC-AT-ATGTTGTATTAAA
* * *
97905825 TTGTTTGGTCAGTG-CCTATGTTGTATTAAA
1 TTGTTTGGTTATTGTCATATGTTGTATTAAA
*
97905855 TTGTTTGGTTGTTGTC
1 TTGTTTGGTTATTGTC
97905871 CGCCTTTATT
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
30 24 0.62
31 2 0.05
32 1 0.03
33 8 0.21
34 4 0.10
ACGTcount: A:0.17, C:0.07, G:0.23, T:0.53
Consensus pattern (31 bp):
TTGTTTGGTTATTGTCATATGTTGTATTAAA
Found at i:97908928 original size:28 final size:28
Alignment explanation
Indices: 97908891--97908951 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 28
97908881 CAGTATCAAT
* * *
97908891 ACAGTTTGGGCCTTAGCGCTATACAGTA
1 ACAGTGTGGGCCTAAGCGCAATACAGTA
*
97908919 ACAGTGTGGGCCTAAGCTCAATACAGTA
1 ACAGTGTGGGCCTAAGCGCAATACAGTA
*
97908947 TCAGT
1 ACAGT
97908952 ACAGTGTAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (28 bp):
ACAGTGTGGGCCTAAGCGCAATACAGTA
Found at i:97909139 original size:27 final size:27
Alignment explanation
Indices: 97909107--97909188 Score: 101
Period size: 27 Copynumber: 3.0 Consensus size: 27
97909097 AGCTGCCTGA
*
97909107 AATAGTAAATGTGGCAAAGCCACCAGT
1 AATAGTAAATGTGGCATAGCCACCAGT
* *
97909134 ATTAGTAATTGTGGCATAGCCACCAGT
1 AATAGTAAATGTGGCATAGCCACCAGT
* * * *
97909161 AACAGTGAATGTGACATAGTCACCAGT
1 AATAGTAAATGTGGCATAGCCACCAGT
97909188 A
1 A
97909189 CAATACTTCC
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (27 bp):
AATAGTAAATGTGGCATAGCCACCAGT
Found at i:97910919 original size:49 final size:49
Alignment explanation
Indices: 97910733--97910977 Score: 240
Period size: 49 Copynumber: 4.8 Consensus size: 49
97910723 TGAGGTCGCA
* * *
97910733 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCA-AAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGATAA-T-TGATCACG
* ** *
97910784 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GATCACG
*
97910834 TGTGTAGTACTAATACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
1 TGTGTAG------TACTAAGTGCAGGCTACTACGTGTACCAGATAATTGATCACG
** *
97910889 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGATCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGATCACG
* * * * **
97910938 TGTGTAGCACTATGTGTAGGCTACTATGCATACCAGATAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA
97910978 CTTTGGCTAC
Statistics
Matches: 164, Mismatches: 22, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
49 71 0.43
50 16 0.10
51 31 0.19
55 14 0.09
56 32 0.20
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGATCACG
Found at i:97913621 original size:46 final size:46
Alignment explanation
Indices: 97913510--97913724 Score: 297
Period size: 46 Copynumber: 4.6 Consensus size: 46
97913500 TTTGACATGA
* * * *
97913510 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTC-TATCATGT
1 TGCCATGGTATCTTTCAACCATGGTC-T--T-ATTCA-TTTCATATCACGT
* *
97913560 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATTTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
97913606 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
** *
97913652 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
97913698 TGCCATGGTATCTTTCAACCATGGTCT
1 TGCCATGGTATCTTTCAACCATGGTCT
97913725 GGTATCTTTA
Statistics
Matches: 153, Mismatches: 11, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
45 4 0.03
46 124 0.81
47 1 0.01
49 1 0.01
50 23 0.15
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.42
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
Found at i:97913729 original size:21 final size:21
Alignment explanation
Indices: 97913703--97913745 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
97913693 CAGGTTGCCA
*
97913703 TGGTATCTTTCAACCATGGTC
1 TGGTATCTTTAAACCATGGTC
97913724 TGGTATCTTTAAACCATGGTC
1 TGGTATCTTTAAACCATGGTC
97913745 T
1 T
97913746 TACACATTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.40
Consensus pattern (21 bp):
TGGTATCTTTAAACCATGGTC
Found at i:97913732 original size:67 final size:67
Alignment explanation
Indices: 97913657--97913791 Score: 252
Period size: 67 Copynumber: 2.0 Consensus size: 67
97913647 CACGTTGCCA
* *
97913657 TGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGG
1 TGGTATCTTTAAACCATGGTCTTACACATTTCATATCAAGTTGCCATGGTATCTTTCAACCATGG
97913722 TC
66 TC
97913724 TGGTATCTTTAAACCATGGTCTTACACATTTCATATCAAGTTGCCATGGTATCTTTCAACCATGG
1 TGGTATCTTTAAACCATGGTCTTACACATTTCATATCAAGTTGCCATGGTATCTTTCAACCATGG
97913789 TC
66 TC
97913791 T
1 T
97913792 TACACATTTC
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 66 1.00
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.38
Consensus pattern (67 bp):
TGGTATCTTTAAACCATGGTCTTACACATTTCATATCAAGTTGCCATGGTATCTTTCAACCATGG
TC
Found at i:97913744 original size:113 final size:113
Alignment explanation
Indices: 97913611--97913833 Score: 410
Period size: 113 Copynumber: 2.0 Consensus size: 113
97913601 CACGTTGCCA
* ** *
97913611 TGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGG
1 TGGTATCTTTAAACCATGGTCTTACACATTTCATATCAAGTTGCCATGGTATCTTTCAACCATGG
97913676 TCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTC
66 TCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTC
97913724 TGGTATCTTTAAACCATGGTCTTACACATTTCATATCAAGTTGCCATGGTATCTTTCAACCATGG
1 TGGTATCTTTAAACCATGGTCTTACACATTTCATATCAAGTTGCCATGGTATCTTTCAACCATGG
97913789 TCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATG
66 TCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATG
97913834 ATCTTACACA
Statistics
Matches: 106, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
113 106 1.00
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.38
Consensus pattern (113 bp):
TGGTATCTTTAAACCATGGTCTTACACATTTCATATCAAGTTGCCATGGTATCTTTCAACCATGG
TCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTC
Found at i:97913854 original size:46 final size:46
Alignment explanation
Indices: 97913724--97913854 Score: 235
Period size: 46 Copynumber: 2.8 Consensus size: 46
97913714 AACCATGGTC
* *
97913724 TGGTATCTTTAAACCATGGTCTTACACATTTCATATCAAGTTGCCA
1 TGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCA
97913770 TGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCA
1 TGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCA
*
97913816 TGGTATCTTTCAACCATGATCTTACACATTTCATATCAG
1 TGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
97913855 AGAGCACACT
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 82 1.00
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (46 bp):
TGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCA
Found at i:97913854 original size:159 final size:159
Alignment explanation
Indices: 97913565--97913854 Score: 490
Period size: 159 Copynumber: 1.8 Consensus size: 159
97913555 CATGTTGCCA
* ** * * *
97913565 TGGTATCTTTCAACCATGGTCTTATTCTTTTCATTTCACGTTGCCATGGTATCTTTCAACCATGG
1 TGGTATCTTTAAACCATGGTCTTACACATTTCATATCAAGTTGCCATGGTATCTTTCAACCATGG
** *
97913630 TCTTATTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
66 TCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGATCTTACACATTTCATATCA
97913695 GGTTGCCATGGTATCTTTCAACCATGGTC
131 GGTTGCCATGGTATCTTTCAACCATGGTC
97913724 TGGTATCTTTAAACCATGGTCTTACACATTTCATATCAAGTTGCCATGGTATCTTTCAACCATGG
1 TGGTATCTTTAAACCATGGTCTTACACATTTCATATCAAGTTGCCATGGTATCTTTCAACCATGG
*
97913789 TCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGATCTTACACATTTCATATCA
66 TCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGATCTTACACATTTCATATCA
97913854 G
131 G
97913855 AGAGCACACT
Statistics
Matches: 121, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
159 121 1.00
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.39
Consensus pattern (159 bp):
TGGTATCTTTAAACCATGGTCTTACACATTTCATATCAAGTTGCCATGGTATCTTTCAACCATGG
TCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGATCTTACACATTTCATATCA
GGTTGCCATGGTATCTTTCAACCATGGTC
Found at i:97920314 original size:27 final size:27
Alignment explanation
Indices: 97920284--97920375 Score: 96
Period size: 27 Copynumber: 3.4 Consensus size: 27
97920274 AACATAGCTG
*
97920284 CCAGAAATAGTAAATGTGGCAAAGCCA
1 CCAGTAATAGTAAATGTGGCAAAGCCA
* * *
97920311 CCAGTATTAGTAATTGTGGCATAGCCA
1 CCAGTAATAGTAAATGTGGCAAAGCCA
* * * * *
97920338 CCAGTAACAGTGAATGTGACATAGTCA
1 CCAGTAATAGTAAATGTGGCAAAGCCA
97920365 CCAGT-ATAGTA
1 CCAGTAATAGTA
97920376 CTTCCTCCAT
Statistics
Matches: 53, Mismatches: 12, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
26 4 0.08
27 49 0.92
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (27 bp):
CCAGTAATAGTAAATGTGGCAAAGCCA
Found at i:97920571 original size:27 final size:26
Alignment explanation
Indices: 97920510--97920575 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 26
97920500 AAGGCATAAT
*
97920510 CGTCATTTTATCATACAGGGGTATTA
1 CGTCATTTTACCATACAGGGGTATTA
* * *
97920536 CGATTATTTTACCCTATAGGGGTATTA
1 CG-TCATTTTACCATACAGGGGTATTA
97920563 CAGTCATTTTACC
1 C-GTCATTTTACC
97920576 TATTTTGGGG
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
26 2 0.06
27 30 0.91
28 1 0.03
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.39
Consensus pattern (26 bp):
CGTCATTTTACCATACAGGGGTATTA
Found at i:97927196 original size:13 final size:13
Alignment explanation
Indices: 97927178--97927204 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
97927168 CCCTAGTTTC
97927178 TCTTTTCTTTCTT
1 TCTTTTCTTTCTT
97927191 TCTTTTCTTTCTT
1 TCTTTTCTTTCTT
97927204 T
1 T
97927205 TCTCCCTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (13 bp):
TCTTTTCTTTCTT
Found at i:97927286 original size:5 final size:5
Alignment explanation
Indices: 97927276--97927308 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
97927266 ATTTAAATGC
97927276 TATAA TATAA TATAA TATAA TATAA T-TAA TATA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATA
97927309 TTTTACTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TATAA
Found at i:97929728 original size:26 final size:26
Alignment explanation
Indices: 97929684--97929741 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
97929674 ATTTTCTCAG
* * *
97929684 AATTTTACTAGGGGCAAAATAGTTAA
1 AATTTTACCAAGGGCAAAATAGTCAA
* *
97929710 AATTTTACCAAGGGTAAAATCGTCAA
1 AATTTTACCAAGGGCAAAATAGTCAA
97929736 AATTTT
1 AATTTT
97929742 GTTAGGGGTA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.41, C:0.10, G:0.16, T:0.33
Consensus pattern (26 bp):
AATTTTACCAAGGGCAAAATAGTCAA
Found at i:97934794 original size:18 final size:18
Alignment explanation
Indices: 97934771--97934807 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
97934761 CATCTGCATT
* *
97934771 AGTTTAAATCCATTTCAA
1 AGTTTAAAACCAATTCAA
97934789 AGTTTAAAACCAATTCAA
1 AGTTTAAAACCAATTCAA
97934807 A
1 A
97934808 ACAATCCTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.16, G:0.05, T:0.32
Consensus pattern (18 bp):
AGTTTAAAACCAATTCAA
Found at i:97934949 original size:20 final size:20
Alignment explanation
Indices: 97934924--97934964 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
97934914 TTAAAATAAG
97934924 TAAAGTTTTCATAACTTATA
1 TAAAGTTTTCATAACTTATA
97934944 TAAAGTTTTCATAACTTATA
1 TAAAGTTTTCATAACTTATA
97934964 T
1 T
97934965 TTTAGTCCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.10, G:0.05, T:0.46
Consensus pattern (20 bp):
TAAAGTTTTCATAACTTATA
Found at i:97935175 original size:16 final size:16
Alignment explanation
Indices: 97935154--97935189 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
97935144 TACCCTTGAT
97935154 ATTCAAAATCTATTAA
1 ATTCAAAATCTATTAA
97935170 ATTCAAAATCTATTAA
1 ATTCAAAATCTATTAA
97935186 ATTC
1 ATTC
97935190 CTTAATTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.47, C:0.14, G:0.00, T:0.39
Consensus pattern (16 bp):
ATTCAAAATCTATTAA
Found at i:97941116 original size:17 final size:17
Alignment explanation
Indices: 97941079--97941110 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
97941069 ACGTGAAACT
97941079 GAAAAGGCTAAAAAGCC
1 GAAAAGGCTAAAAAGCC
97941096 GAAAA-GCTAAAAAGC
1 GAAAAGGCTAAAAAGC
97941111 TGGAAAGTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.56, C:0.16, G:0.22, T:0.06
Consensus pattern (17 bp):
GAAAAGGCTAAAAAGCC
Found at i:97941568 original size:27 final size:27
Alignment explanation
Indices: 97941535--97941601 Score: 89
Period size: 27 Copynumber: 2.5 Consensus size: 27
97941525 ACCGAAATAT
97941535 GGTAAAATGACTAAAATACCCCCATAA
1 GGTAAAATGACTAAAATACCCCCATAA
* * ** *
97941562 GGTAAAATGACTGAAATATCCCTGTAT
1 GGTAAAATGACTAAAATACCCCCATAA
97941589 GGTAAAATGACTA
1 GGTAAAATGACTA
97941602 TTTTGCCCTT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.43, C:0.16, G:0.16, T:0.24
Consensus pattern (27 bp):
GGTAAAATGACTAAAATACCCCCATAA
Found at i:97941621 original size:27 final size:27
Alignment explanation
Indices: 97941586--97941690 Score: 131
Period size: 27 Copynumber: 3.9 Consensus size: 27
97941576 AATATCCCTG
97941586 TATGGTAAAATGACTATTTTGCCCTTA
1 TATGGTAAAATGACTATTTTGCCCTTA
* * *
97941613 CATGTTAAAAT-AATAGTTTTGCCCTTA
1 TATGGTAAAATGACTA-TTTTGCCCTTA
*
97941640 TAAGGTAAAATGACTATTTTGCCCTTA
1 TATGGTAAAATGACTATTTTGCCCTTA
** *
97941667 TATGGTAGGATGACTGTTTTGCCC
1 TATGGTAAAATGACTATTTTGCCC
97941691 CTATGTGATG
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
26 3 0.05
27 59 0.91
28 3 0.05
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (27 bp):
TATGGTAAAATGACTATTTTGCCCTTA
Found at i:97942033 original size:18 final size:18
Alignment explanation
Indices: 97941981--97942035 Score: 74
Period size: 18 Copynumber: 3.1 Consensus size: 18
97941971 GGACTTGCTT
* * *
97941981 ACTGCTTACTGTTACTAC
1 ACTGATTACTATTACTGC
97941999 ACTGATTACTATTACTGC
1 ACTGATTACTATTACTGC
*
97942017 ACTGTTTACTATTACTGC
1 ACTGATTACTATTACTGC
97942035 A
1 A
97942036 ATAGGCCAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.25, C:0.24, G:0.11, T:0.40
Consensus pattern (18 bp):
ACTGATTACTATTACTGC
Found at i:97947179 original size:47 final size:45
Alignment explanation
Indices: 97947119--97947241 Score: 122
Period size: 47 Copynumber: 2.6 Consensus size: 45
97947109 GATGTGTGCT
* * *
97947119 AGTGCAAGACATGTTTGGGACATGCATCGGC-TACATTATGAGAGCC
1 AGTGTAAGACATGTTTGGGACATGCATCGGCATA-A-GACGAGAGCC
* * * * *
97947165 AGTGTAAGACCATGTTTGGAACTTGGTATTGGCATTAAGACGAGAGCT
1 AGTGTAAGA-CATGTTTGGGACAT-GCATCGGCA-TAAGACGAGAGCC
97947213 AGTGTAAGACATGTTTGGGACATGCATCG
1 AGTGTAAGACATGTTTGGGACATGCATCG
97947242 ACCTCGAGAT
Statistics
Matches: 61, Mismatches: 12, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
46 12 0.20
47 24 0.39
48 22 0.36
49 1 0.02
50 2 0.03
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.27
Consensus pattern (45 bp):
AGTGTAAGACATGTTTGGGACATGCATCGGCATAAGACGAGAGCC
Found at i:97947376 original size:92 final size:94
Alignment explanation
Indices: 97947116--97947386 Score: 231
Period size: 92 Copynumber: 2.9 Consensus size: 94
97947106 ATGGATGTGT
* * * *
97947116 GCTAGTGCAAGACATGTTTGGGACATGCATCG-GCTAC-A-TTATGAGAGCCAGTGTAAGACCAT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCT-CGAGATATG-GAGCCAGTGTAAGACCAT
* *
97947178 GTTTGGAACTTGGTATTGGCATTAAGACGAGA
64 GTTTGGAACATGGCATTGGCATT-AGACGAGA
* * * *
97947210 GCTAGTGTAAGACATGTTTGGGACATGCATCGACCTCGAGATATGGAAGCTAGTGTGAGACC-TA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATATGG-AGCCAGTGTAAGACCATG
* * *
97947274 TCTGGGACATGGCATTGGC-TT-GAC-ATGT
65 TTTGGAACATGGCATTGGCATTAGACGA-GA
* * *
97947302 G-TCAGTGTAAGAC-TAGTCTGGGACATGGCATCGA-CT-TAGATGTGTGAGCCAGTGTAAAACC
1 GCT-AGTGTAAGACAT-GTCTGGGACAT-GCATCGACCTCGAGATATG-GAGCCAGTGTAAGACC
*
97947363 ATGTTTGGAACATGGCATCGGCAT
62 ATGTTTGGAACATGGCATTGGCAT
97947387 CGTACCCTAT
Statistics
Matches: 145, Mismatches: 21, Indels: 23
0.77 0.11 0.12
Matches are distributed among these distances:
91 21 0.14
92 45 0.31
93 8 0.06
94 34 0.23
95 20 0.14
96 17 0.12
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.27
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATATGGAGCCAGTGTAAGACCATGT
TTGGAACATGGCATTGGCATTAGACGAGA
Found at i:97954561 original size:45 final size:45
Alignment explanation
Indices: 97954497--97954682 Score: 255
Period size: 45 Copynumber: 4.1 Consensus size: 45
97954487 GGTACTAAGG
*
97954497 CATTTTGATCATGACACCATAGCATCTTTCAGTTATGGTCTTACT
1 CATTTTGATCATGACACCATAGCATCTTTCAGCTATGGTCTTACT
* *
97954542 CATTTTGATCATGACACCATAGCATCTTTCAGTTATAGTCTTACT
1 CATTTTGATCATGACACCATAGCATCTTTCAGCTATGGTCTTACT
* **
97954587 CATTTTTATCATGATGCCATAGCATCTTTCAGCTATGGTCTTACT
1 CATTTTGATCATGACACCATAGCATCTTTCAGCTATGGTCTTACT
* * * ** * *
97954632 TATTTTTATTATGATGCCATAGCATCTTTCACCTATGGTCATACT
1 CATTTTGATCATGACACCATAGCATCTTTCAGCTATGGTCTTACT
97954677 CATTTT
1 CATTTT
97954683 AGGCATATAG
Statistics
Matches: 130, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 130 1.00
ACGTcount: A:0.24, C:0.22, G:0.12, T:0.42
Consensus pattern (45 bp):
CATTTTGATCATGACACCATAGCATCTTTCAGCTATGGTCTTACT
Found at i:97958971 original size:20 final size:20
Alignment explanation
Indices: 97958934--97958971 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
97958924 TGATGGGGAG
*
97958934 CAAGAATATCAAGTTGGATT
1 CAAGAATATCAAGCTGGATT
97958954 CAAGAA-ATCGAAGCTGGA
1 CAAGAATATC-AAGCTGGA
97958972 GGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (20 bp):
CAAGAATATCAAGCTGGATT
Found at i:97960924 original size:46 final size:46
Alignment explanation
Indices: 97960872--97961191 Score: 498
Period size: 46 Copynumber: 7.0 Consensus size: 46
97960862 AGTGTGCTCT
*
97960872 CTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
97960918 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
97960964 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
97961010 CTAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
97961056 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ***
97961102 ATGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
97961148 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
97961192 TCATGTCAAA
Statistics
Matches: 256, Mismatches: 17, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 1 0.00
46 255 1.00
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:97962951 original size:27 final size:27
Alignment explanation
Indices: 97962887--97962952 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
97962877 TGTGTTTACA
* * *
97962887 ATCCCGGTGGACTATCTCCTATTTATT
1 ATCCCAGTGGACTATCTCATATTTAGT
* * * *
97962914 GTCCTATTGGACTATCTCATGTTTAGT
1 ATCCCAGTGGACTATCTCATATTTAGT
97962941 ATCCCAGTGGAC
1 ATCCCAGTGGAC
97962953 AATCAAATGA
Statistics
Matches: 29, Mismatches: 10, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (27 bp):
ATCCCAGTGGACTATCTCATATTTAGT
Found at i:97963084 original size:45 final size:45
Alignment explanation
Indices: 97963026--97963200 Score: 190
Period size: 45 Copynumber: 3.8 Consensus size: 45
97963016 TTAATTTGAT
* *
97963026 GCCATAACGTCTTTCAGCTATGGTCTTACTCTTTTTTATCATGAC
1 GCCATAACATCTTTCAGCTATGGTCTTACTCATTTTTATCATGAC
* * *
97963071 GCCATAGCATCTTTCA-ATGATGGTCTTACTCATTTTTTTATCATGGC
1 GCCATAACATCTTTCAGCT-ATGGTCTTACTCA--TTTTTATCATGAC
* * ** * * *
97963118 TCAATGTCATCTTTTAGCTATGATCTTACTCATTTTTATCATCAC
1 GCCATAACATCTTTCAGCTATGGTCTTACTCATTTTTATCATGAC
* *
97963163 GCCAAAACATCTTTCAACTATGGTCTTACTCATTTTTA
1 GCCATAACATCTTTCAGCTATGGTCTTACTCATTTTTA
97963201 GGGGTATAGC
Statistics
Matches: 104, Mismatches: 22, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
44 1 0.01
45 67 0.64
47 35 0.34
48 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.11, T:0.43
Consensus pattern (45 bp):
GCCATAACATCTTTCAGCTATGGTCTTACTCATTTTTATCATGAC
Found at i:97964653 original size:4 final size:4
Alignment explanation
Indices: 97964646--97964674 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
97964636 ATCTAGTTAG
97964646 TTAA TTAA TTAA TTAA TTAA TTAA TTAA T
1 TTAA TTAA TTAA TTAA TTAA TTAA TTAA T
97964675 ATTTTAAGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TTAA
Found at i:97973085 original size:68 final size:68
Alignment explanation
Indices: 97973002--97973141 Score: 244
Period size: 68 Copynumber: 2.1 Consensus size: 68
97972992 GTTTATGACC
*
97973002 AGAAGAAACCCGTCAGGACTATTACTGTTTGATAGTGAGATTGATCGCACAGTTCGCAGAAACCG
1 AGAAGAAACCCGTCAGGACCATTACTGTTTGATAGTGAGATTGATCGCACAGTTCGCAGAAACCG
97973067 AAG
66 AAG
* * *
97973070 AGAAGAAACCTGTCAGGACCATTACTGTTTGATAGTGAGATTGATCGCACAGTTCGCAGAAATCT
1 AGAAGAAACCCGTCAGGACCATTACTGTTTGATAGTGAGATTGATCGCACAGTTCGCAGAAACCG
97973135 AAG
66 AAG
97973138 AGAA
1 AGAA
97973142 ATAAGGCGAA
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
68 68 1.00
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (68 bp):
AGAAGAAACCCGTCAGGACCATTACTGTTTGATAGTGAGATTGATCGCACAGTTCGCAGAAACCG
AAG
Found at i:97978336 original size:30 final size:28
Alignment explanation
Indices: 97978300--97978355 Score: 76
Period size: 30 Copynumber: 1.9 Consensus size: 28
97978290 AAGCGAAAAA
* *
97978300 GAAAAAGAGTGTGTGCAAGAAAGTAAAGTT
1 GAAAAAGAGAGTGAGCAA-AAAG-AAAGTT
97978330 GAAAAAGAGAGTGAGCAAAAAGAAAG
1 GAAAAAGAGAGTGAGCAAAAAGAAAG
97978356 CGTGGAAGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 4 0.17
29 4 0.17
30 16 0.67
ACGTcount: A:0.54, C:0.04, G:0.30, T:0.12
Consensus pattern (28 bp):
GAAAAAGAGAGTGAGCAAAAAGAAAGTT
Found at i:97984674 original size:13 final size:13
Alignment explanation
Indices: 97984656--97984681 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
97984646 CTCGACAGGG
97984656 ACACGCCCGTGTA
1 ACACGCCCGTGTA
97984669 ACACGCCCGTGTA
1 ACACGCCCGTGTA
97984682 CGATTACTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.38, G:0.23, T:0.15
Consensus pattern (13 bp):
ACACGCCCGTGTA
Found at i:97993924 original size:10 final size:10
Alignment explanation
Indices: 97993909--97993936 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
97993899 TGAAGATCTC
97993909 CCTTCAAGTT
1 CCTTCAAGTT
97993919 CCTTCAAGTT
1 CCTTCAAGTT
97993929 CCTTCAAG
1 CCTTCAAG
97993937 AGTTTTGAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.21, C:0.32, G:0.11, T:0.36
Consensus pattern (10 bp):
CCTTCAAGTT
Found at i:98001468 original size:56 final size:56
Alignment explanation
Indices: 98001400--98001565 Score: 224
Period size: 56 Copynumber: 2.9 Consensus size: 56
98001390 ACCATGGCAT
98001400 CGATATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGACTC
1 CGATATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGACTC
* * * * * *
98001456 CGATATAAGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATCTAAATTT
1 CGATATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGT-GACTC
* * ** *
98001513 CGATATATGTGTGAGAGTAAGACCATGTCTAGCACGTTGACATCGATATGTGA
1 CGATATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGA
98001566 TTACATGTAA
Statistics
Matches: 94, Mismatches: 15, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
56 49 0.52
57 45 0.48
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.31
Consensus pattern (56 bp):
CGATATATGTGTGCGAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGACTC
Found at i:98003055 original size:168 final size:168
Alignment explanation
Indices: 98002777--98003115 Score: 642
Period size: 168 Copynumber: 2.0 Consensus size: 168
98002767 TGAGAACTAT
*
98002777 ATGGTTTAAATTAATATGGTCTTATGCATATAGTCTTGAGATGGGTTAAAATGGCTAGGCATATT
1 ATGGTTTAAATTAATATGGTCTTATGCACATAGTCTTGAGATGGGTTAAAATGGCTAGGCATATT
*
98002842 GATTTGGATTGGTTTTTGATCATTCAGATTAGGTATGCTATGAAATGTCTTTGATGTTCAAAAAT
66 GATTTGGATTGGTTTTTGATCATTCAGATCAGGTATGCTATGAAATGTCTTTGATGTTCAAAAAT
98002907 GATTAAAGATATTATAGTGGATTACACATGAATTAGTA
131 GATTAAAGATATTATAGTGGATTACACATGAATTAGTA
98002945 ATGGTTTAAATTAATATGGTCTTATGCACATAGTCTTGAGATGGGTTAAAATGGCTAGGCATATT
1 ATGGTTTAAATTAATATGGTCTTATGCACATAGTCTTGAGATGGGTTAAAATGGCTAGGCATATT
* *
98003010 GATTTGGATTGGTTTTTGATCATTCGGATCAGGTATGCTATGAAATGTCTTTGATGTTCGAAAAT
66 GATTTGGATTGGTTTTTGATCATTCAGATCAGGTATGCTATGAAATGTCTTTGATGTTCAAAAAT
98003075 GATTAAAGATATTATAGTGGATTACACATGAATTAGTA
131 GATTAAAGATATTATAGTGGATTACACATGAATTAGTA
98003113 ATG
1 ATG
98003116 CACATGATTA
Statistics
Matches: 167, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
168 167 1.00
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.39
Consensus pattern (168 bp):
ATGGTTTAAATTAATATGGTCTTATGCACATAGTCTTGAGATGGGTTAAAATGGCTAGGCATATT
GATTTGGATTGGTTTTTGATCATTCAGATCAGGTATGCTATGAAATGTCTTTGATGTTCAAAAAT
GATTAAAGATATTATAGTGGATTACACATGAATTAGTA
Found at i:98005456 original size:40 final size:40
Alignment explanation
Indices: 98005388--98005593 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 40
98005378 GAGATTTAGT
** * *
98005388 CGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGCC
1 CGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCC
* * *
98005427 CGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCC
* *
98005467 CGGAAATAGTCGCTAGCACAAATGCCTTCGGGTCTTAGCC
1 CGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCC
* ** * * *
98005507 CGGATATAG-CAACTCGTGCAAATGCCTTTGGATCTTAGTC
1 CGGATATAGTC-ACTAGCACAAATGCCTTCGGGTCTTAGCC
* * *
98005547 CGGATATAGTTACTAGCATAAAAT-CCTTCGGGACTTAGCC
1 CGGATATAGTCACTAGCA-CAAATGCCTTCGGGTCTTAGCC
98005587 CGGATAT
1 CGGATAT
98005594 CATTCGAATA
Statistics
Matches: 134, Mismatches: 29, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
39 15 0.11
40 115 0.86
41 4 0.03
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCC
Found at i:98018117 original size:48 final size:50
Alignment explanation
Indices: 98017772--98018114 Score: 518
Period size: 50 Copynumber: 6.9 Consensus size: 50
98017762 TTGATGTATA
98017772 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATATATG
*
98017824 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
98017874 AGATATGTATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATATG
* *
98017926 AGATATGTACATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
*
98017974 AGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATATATATG
* *
98018024 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG-AA-ATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
* *
98018072 AGATATGTATATGTGGTAAAGTCGAATGGCTAGTGTGAAATAT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
98018115 GTAGGCGATG
Statistics
Matches: 270, Mismatches: 11, Indels: 22
0.89 0.04 0.07
Matches are distributed among these distances:
47 1 0.00
48 85 0.31
49 8 0.03
50 89 0.33
51 5 0.02
52 81 0.30
53 1 0.00
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.31
Consensus pattern (50 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
Found at i:98018133 original size:98 final size:99
Alignment explanation
Indices: 98017765--98018114 Score: 519
Period size: 102 Copynumber: 3.5 Consensus size: 99
98017755 GCTGAAATTG
* *
98017765 ATGTATAAGATATGTATATGTGGTAAAGCCGAATGG-CTAATGTGAAATATATATATATGAGATA
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGTC-AATGTGAAATATATATAGAT-AGATA
*
98017829 TGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATAT
64 TGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
* *
98017867 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATATATGAGATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATAGAT-AGATAT
*
98017932 GTACATGTGGTAAAGCCGAATGGCTAATGTGAAAT
65 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
98017967 ATGTATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATAT--ATGAGATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATAGAT-AGATAT
*
98018030 GTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
65 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
98018065 ATGTATGAGATATGTATATGTGGTAAAGTCGAATGG-CTAGTGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGTC-AATGTGAAATAT
98018115 GTAGGCGATG
Statistics
Matches: 235, Mismatches: 11, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
97 1 0.00
98 87 0.37
100 54 0.23
101 2 0.01
102 90 0.38
103 1 0.00
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.31
Consensus pattern (99 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATAGATAGATATG
TATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:98018374 original size:37 final size:37
Alignment explanation
Indices: 98018265--98018374 Score: 175
Period size: 37 Copynumber: 3.0 Consensus size: 37
98018255 GAAATATATA
*
98018265 TTCCGGGTAAGACCCGATGACTACGTGTGGAGATTAT
1 TTCCGGGTAAGACCCGATGACTACGTGTGGAGATTTT
* *
98018302 GTCCAGGTAAGACCCGATGACTACGTGTGGAGATTTT
1 TTCCGGGTAAGACCCGATGACTACGTGTGGAGATTTT
* *
98018339 TTCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
98018375 CATCTGAGCT
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (37 bp):
TTCCGGGTAAGACCCGATGACTACGTGTGGAGATTTT
Found at i:98019682 original size:40 final size:40
Alignment explanation
Indices: 98019628--98019986 Score: 484
Period size: 40 Copynumber: 9.0 Consensus size: 40
98019618 GAGAGTTATA
* * * *
98019628 TATATCCAGGCTAAGTCCTGAAGAGCATTCGTGCTACTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
*
98019668 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* * * *
98019708 TATGTCCGGGCTAAGTCTCGAAGAGCATTTGTGCTAGAGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
*
98019748 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* * * **
98019788 TATGTCCGGGCTAAGTCTCGAAGAGCATTTGTGCTACAGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
*
98019828 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* * * *
98019868 TATATCCGGGCTAAGTCTCAAAGAGCATTTGTGCTAGAGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* * *
98019908 TATATCAGGGTTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
* * *
98019948 TATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTAGTG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
98019987 ATGTGTATTC
Statistics
Matches: 274, Mismatches: 45, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 274 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGT
Found at i:98019984 original size:80 final size:80
Alignment explanation
Indices: 98019628--98019974 Score: 561
Period size: 80 Copynumber: 4.3 Consensus size: 80
98019618 GAGAGTTATA
* * ** *
98019628 TATATCCAGGCTAAGTC-CTGAAGAGCATTCGTGCTACTGATATATCCGGGCTAAGTCCCGAAGA
1 TATATCCGGGCTAAGTCTC-GAAGAGCATTTGTGCTAGAGTTATATCCGGGCTAAGTCCCGAAGA
98019692 GCATTCGTGCTGGTGT
65 GCATTCGTGCTGGTGT
*
98019708 TATGTCCGGGCTAAGTCTCGAAGAGCATTTGTGCTAGAGTTATATCCGGGCTAAGTCCCGAAGAG
1 TATATCCGGGCTAAGTCTCGAAGAGCATTTGTGCTAGAGTTATATCCGGGCTAAGTCCCGAAGAG
98019773 CATTCGTGCTGGTGT
66 CATTCGTGCTGGTGT
* *
98019788 TATGTCCGGGCTAAGTCTCGAAGAGCATTTGTGCTACAGTTATATCCGGGCTAAGTCCCGAAGAG
1 TATATCCGGGCTAAGTCTCGAAGAGCATTTGTGCTAGAGTTATATCCGGGCTAAGTCCCGAAGAG
98019853 CATTCGTGCTGGTGT
66 CATTCGTGCTGGTGT
* * *
98019868 TATATCCGGGCTAAGTCTCAAAGAGCATTTGTGCTAGAGTTATATCAGGGTTAAGTCCCGAAGAG
1 TATATCCGGGCTAAGTCTCGAAGAGCATTTGTGCTAGAGTTATATCCGGGCTAAGTCCCGAAGAG
98019933 CATTCGTGCTGGTGT
66 CATTCGTGCTGGTGT
* *
98019948 TATATCCGGGCTAGGTCCCGAAGAGCA
1 TATATCCGGGCTAAGTCTCGAAGAGCA
98019975 ATCATGCTAG
Statistics
Matches: 251, Mismatches: 15, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
80 250 1.00
81 1 0.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (80 bp):
TATATCCGGGCTAAGTCTCGAAGAGCATTTGTGCTAGAGTTATATCCGGGCTAAGTCCCGAAGAG
CATTCGTGCTGGTGT
Found at i:98020200 original size:25 final size:25
Alignment explanation
Indices: 98020150--98020200 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
98020140 TGTGTAACAA
* *
98020150 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
98020175 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
98020200 C
1 C
98020201 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:98022596 original size:50 final size:50
Alignment explanation
Indices: 98022536--98022684 Score: 275
Period size: 50 Copynumber: 3.0 Consensus size: 50
98022526 TTGATGTATA
98022536 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
*
98022586 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
98022634 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
98022684 A
1 A
98022685 CGAATGGTCT
Statistics
Matches: 95, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
48 45 0.47
49 4 0.04
50 46 0.48
ACGTcount: A:0.38, C:0.06, G:0.25, T:0.32
Consensus pattern (50 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATG
Found at i:98022647 original size:98 final size:96
Alignment explanation
Indices: 98022529--98022906 Score: 411
Period size: 98 Copynumber: 4.1 Consensus size: 96
98022519 GCTGAAATTG
*
98022529 ATGTATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATATGAGATATGT
98022594 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
64 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
98022627 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGACGA-ATG
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATATGA-GATAT-
* * * * *
98022691 GTCTATGT-G-AAA----TAT--ATATATATG--AG
62 GTATATGTGGTAAAGCCGAATGGCTA-ATGTGAAAT
* *
98022717 A--TAT--G-TAT----ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTAT
98022773 ATGTGGTAAAGCCGAATGG-TCAATGTGAAATAT
66 ATGTGGTAAAGCCGAATGGCT-AATGTG-AA-AT
* * *
98022806 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTAT
*
98022871 ATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
66 ATGTGGTAAAGCCGAATGGCTAATGTGAAAT
98022902 ATGTA
1 ATGTA
98022907 GGCGATGTGT
Statistics
Matches: 237, Mismatches: 16, Indels: 56
0.77 0.05 0.18
Matches are distributed among these distances:
78 8 0.03
79 12 0.05
80 5 0.02
81 27 0.11
84 2 0.01
85 8 0.03
86 2 0.01
88 3 0.01
89 2 0.01
90 2 0.01
91 5 0.02
92 4 0.02
93 3 0.01
94 3 0.01
96 6 0.03
97 5 0.02
98 130 0.55
99 10 0.04
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (96 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTAT
ATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:98022653 original size:48 final size:48
Alignment explanation
Indices: 98022529--98022906 Score: 411
Period size: 48 Copynumber: 8.1 Consensus size: 48
98022519 GCTGAAATTG
*
98022529 ATGTATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
*
98022579 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
98022627 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
* * * * * *
98022677 ATATATGACGA-ATGGTCTATGT-G-AAA----TAT--ATATATATGAGAT
1 ATGTATGA-GATAT-GTATATGTGGTAAAGCCGAATGGCTA-ATGTGAAAT
98022719 ATG--T---AT------ATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
98022756 ATGTATGAGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-AT
* *
98022806 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
98022854 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
98022902 ATGTA
1 ATGTA
98022907 GGCGATGTGT
Statistics
Matches: 281, Mismatches: 18, Indels: 60
0.78 0.05 0.17
Matches are distributed among these distances:
30 4 0.01
31 1 0.00
32 3 0.01
36 3 0.01
37 10 0.04
38 2 0.01
39 1 0.00
40 1 0.00
42 6 0.02
43 3 0.01
44 4 0.01
45 2 0.01
47 1 0.00
48 124 0.44
49 11 0.04
50 95 0.34
51 10 0.04
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.32
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:98022715 original size:31 final size:29
Alignment explanation
Indices: 98022656--98022711 Score: 96
Period size: 29 Copynumber: 1.9 Consensus size: 29
98022646 GTGGTAAAGC
98022656 CGAATGGCTAATGTGAAATATATATATGA
1 CGAATGGCTAATGTGAAATATATATATGA
98022685 CGAATGGTCT-ATGTGAAATATATATAT
1 CGAATGG-CTAATGTGAAATATATATAT
98022712 ATGAGATATG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 24 0.92
30 2 0.08
ACGTcount: A:0.39, C:0.07, G:0.20, T:0.34
Consensus pattern (29 bp):
CGAATGGCTAATGTGAAATATATATATGA
Found at i:98022727 original size:129 final size:127
Alignment explanation
Indices: 98022558--98022813 Score: 453
Period size: 129 Copynumber: 2.0 Consensus size: 127
98022548 GTGGTAAAGC
98022558 CGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 CGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
98022623 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGG-CTAATGTGAAATATATATATGA
66 AAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGTC-AATGTGAAATATATATATGA
98022685 CGAATGGTCT-ATGTGAAATATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 CGAATGG-CTAATGTG-AA-ATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
98022749 GTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATATGA
63 GTGAAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATATGA
98022814 GATATGTATA
Statistics
Matches: 124, Mismatches: 1, Indels: 6
0.95 0.01 0.05
Matches are distributed among these distances:
127 12 0.10
128 4 0.03
129 107 0.86
130 1 0.01
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.32
Consensus pattern (127 bp):
CGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
AAATATGTATGAGATATGCATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATATGA
Found at i:98023156 original size:37 final size:37
Alignment explanation
Indices: 98023055--98023163 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
98023045 AAATATATAT
*
98023055 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
98023092 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * **
98023129 TCCGGGTAAGACCCGATAATTTTGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
98023164 CATCTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:98030602 original size:40 final size:40
Alignment explanation
Indices: 98030565--98030749 Score: 186
Period size: 40 Copynumber: 4.6 Consensus size: 40
98030555 GCTACTCGTT
*
98030565 CAAATGCCTTCGGGATATAGCCCGG-TTATAGTAACTCGCG
1 CAAATGCCTTCGGGAT-TAGCCCGGATTATAGTAACTCGCA
*
98030605 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGA-TTAGCCCGGATTATAGTAACTCGCA
* *
98030645 CCAATGCCTTCGGGCTTAGCCCGGAATTA-A-TAACTCGCA
1 CAAATGCCTTCGGGATTAGCCCGG-ATTATAGTAACTCGCA
* * * *
98030684 CAAATGCCTTC-GGATCTTAGTCCGGA-TATGGTCACTTAGCA
1 CAAATGCCTTCGGGA--TTAGCCCGGATTATAGTAAC-TCGCA
98030725 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGA-TTAGCCCGGA
98030750 CATCATTCGA
Statistics
Matches: 123, Mismatches: 12, Indels: 20
0.79 0.08 0.13
Matches are distributed among these distances:
38 4 0.03
39 28 0.23
40 77 0.63
41 14 0.11
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGATTAGCCCGGATTATAGTAACTCGCA
Found at i:98030679 original size:79 final size:80
Alignment explanation
Indices: 98030567--98030749 Score: 205
Period size: 79 Copynumber: 2.3 Consensus size: 80
98030557 TACTCGTTCA
* *
98030567 AATGCCTTCGGGATATAGCCCGG-TTATAGTAACTCGCGCAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGCT-TAGCCCGGATTATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
98030630 ATTTAGTAAC-TCGCACC
64 ATATAGTAACTTAGCA-C
**
98030647 AATGCCTTCGGGCTTAGCCCGGAATTA-A-TAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGCTTAGCCCGG-ATTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
98030710 TATGGTCACTTAGCAC
65 TATAGTAACTTAGCAC
*
98030726 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGG-CTTAGCCCGGA
98030750 CATCATTCGA
Statistics
Matches: 89, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
78 3 0.03
79 55 0.62
80 28 0.31
81 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGCTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:98031951 original size:56 final size:56
Alignment explanation
Indices: 98031876--98032051 Score: 311
Period size: 56 Copynumber: 3.2 Consensus size: 56
98031866 TATTAGTTTA
*
98031876 TTGCCCATGCTT-TTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATCCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
98031931 TTGCCCATCCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATCCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
98031987 TTGCCCATGCTTCTTATTTTATT-TTCCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATCCTTCTTATTTTATTCTT-CCATTAACACAACATGTTTCATGACATGTT
98032043 TTGCCCATC
1 TTGCCCATC
98032052 ATCCCTTGTC
Statistics
Matches: 116, Mismatches: 3, Indels: 3
0.95 0.02 0.02
Matches are distributed among these distances:
55 13 0.11
56 103 0.89
ACGTcount: A:0.23, C:0.24, G:0.09, T:0.44
Consensus pattern (56 bp):
TTGCCCATCCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:98034772 original size:39 final size:39
Alignment explanation
Indices: 98034729--98034805 Score: 111
Period size: 39 Copynumber: 2.0 Consensus size: 39
98034719 ATACACTAGA
*
98034729 CAATTTCAGTCT-GGGCCTAAGCCCATTTCAGTAACAGTT
1 CAATTTCAGT-TAGGGCCTAAGCCCATTACAGTAACAGTT
* *
98034768 CAATTTCAGTTAGGGCCTTAGCCCATTACAGTATCAGT
1 CAATTTCAGTTAGGGCCTAAGCCCATTACAGTAACAGT
98034806 ATTAGTGTAG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
38 1 0.03
39 33 0.97
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (39 bp):
CAATTTCAGTTAGGGCCTAAGCCCATTACAGTAACAGTT
Found at i:98037514 original size:25 final size:24
Alignment explanation
Indices: 98037486--98037532 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
98037476 AGTAGCTCAT
* *
98037486 AAGAGCCATAATCGGGAAGTTCACA
1 AAGAACCA-AATCGGGAAATTCACA
*
98037511 AAGAACCAGATCGGGAAATTCA
1 AAGAACCAAATCGGGAAATTCA
98037533 ATCGAACACT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 12 0.63
25 7 0.37
ACGTcount: A:0.43, C:0.19, G:0.23, T:0.15
Consensus pattern (24 bp):
AAGAACCAAATCGGGAAATTCACA
Found at i:98038472 original size:31 final size:31
Alignment explanation
Indices: 98038434--98038495 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
98038424 CCAAATGATA
98038434 GGGTATAAACTATGCCACATAAGCTTTGTTT
1 GGGTATAAACTATGCCACATAAGCTTTGTTT
98038465 GGGTATAAACTATGCCACATAAGCTTTGTTT
1 GGGTATAAACTATGCCACATAAGCTTTGTTT
98038496 CCTTTTTTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.35
Consensus pattern (31 bp):
GGGTATAAACTATGCCACATAAGCTTTGTTT
Found at i:98038840 original size:17 final size:17
Alignment explanation
Indices: 98038818--98038855 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
98038808 AAACTGAATC
* *
98038818 TTTTCGTTTTATTTAAT
1 TTTTCGATTTAATTAAT
98038835 TTTTCGATTTAATTAAT
1 TTTTCGATTTAATTAAT
98038852 TTTT
1 TTTT
98038856 ATATTCAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.21, C:0.05, G:0.05, T:0.68
Consensus pattern (17 bp):
TTTTCGATTTAATTAAT
Found at i:98047443 original size:41 final size:41
Alignment explanation
Indices: 98047394--98047488 Score: 154
Period size: 41 Copynumber: 2.3 Consensus size: 41
98047384 GCCTAAGTAA
98047394 AGTGGTACCCAGTACCTCATCAAATCTATCCGAAGTAAAAT
1 AGTGGTACCCAGTACCTCATCAAATCTATCCGAAGTAAAAT
* *
98047435 AGTGGTACCCAGTACCTCATCGAATCTATCTGAAGTAAAAT
1 AGTGGTACCCAGTACCTCATCAAATCTATCCGAAGTAAAAT
**
98047476 AGTGACACCCAGT
1 AGTGGTACCCAGT
98047489 GTCTCATCGA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 50 1.00
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (41 bp):
AGTGGTACCCAGTACCTCATCAAATCTATCCGAAGTAAAAT
Found at i:98047495 original size:41 final size:41
Alignment explanation
Indices: 98047400--98047498 Score: 144
Period size: 41 Copynumber: 2.4 Consensus size: 41
98047390 GTAAAGTGGT
* **
98047400 ACCCAGTACCTCATCAAATCTATCCGAAGTAAAATAGTGGT
1 ACCCAGTACCTCATCGAATCTATCCGAAGTAAAATAGTGAC
*
98047441 ACCCAGTACCTCATCGAATCTATCTGAAGTAAAATAGTGAC
1 ACCCAGTACCTCATCGAATCTATCCGAAGTAAAATAGTGAC
**
98047482 ACCCAGTGTCTCATCGA
1 ACCCAGTACCTCATCGA
98047499 CTCGAGGTCG
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.24
Consensus pattern (41 bp):
ACCCAGTACCTCATCGAATCTATCCGAAGTAAAATAGTGAC
Found at i:98048725 original size:31 final size:32
Alignment explanation
Indices: 98048690--98048750 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 32
98048680 TTGATCTAAT
*
98048690 AAATATCTTTT-ACTAATTAATA-ATAAATATA
1 AAATATATTTTCACTAATT-ATACATAAATATA
98048721 AAATATATTTTCACTAATTATACATAAATA
1 AAATATATTTTCACTAATTATACATAAATA
98048751 ATACAAATGT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 13 0.48
32 14 0.52
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (32 bp):
AAATATATTTTCACTAATTATACATAAATATA
Found at i:98053307 original size:28 final size:27
Alignment explanation
Indices: 98053257--98053364 Score: 121
Period size: 27 Copynumber: 3.9 Consensus size: 27
98053247 GGATGCCTGA
* *
98053257 ACAGATAATGTGACAGAGTCACCAGAT
1 ACAGATAATGTGGCAGAGCCACCAGAT
98053284 ACAGATAATCGTGGCAGAGCCACCAGA-
1 ACAGATAAT-GTGGCAGAGCCACCAGAT
*
98053311 ACAGATATATGGGGCAGAGCCACCAGAT
1 ACAGATA-ATGTGGCAGAGCCACCAGAT
* *
98053339 -CAGATAATTTGTGGCATAGCGACCAG
1 ACAGATAA--TGTGGCAGAGCCACCAG
98053365 GACGCTTCCT
Statistics
Matches: 70, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
26 1 0.01
27 38 0.54
28 31 0.44
ACGTcount: A:0.36, C:0.21, G:0.26, T:0.17
Consensus pattern (27 bp):
ACAGATAATGTGGCAGAGCCACCAGAT
Found at i:98053338 original size:55 final size:54
Alignment explanation
Indices: 98053255--98053364 Score: 141
Period size: 55 Copynumber: 2.0 Consensus size: 54
98053245 ATGGATGCCT
* *
98053255 GAACAGATAATGTGACAGAGTCACCAGATACAGATAA-TCGTGGCAGAGCCACCA
1 GAACAGATAATGGGACAGAGCCACCAGAT-CAGATAATTCGTGGCAGAGCCACCA
* * * *
98053309 GAACAGATATATGGGGCAGAGCCACCAGATCAGATAATTTGTGGCATAGCGACCA
1 GAACAGATA-ATGGGACAGAGCCACCAGATCAGATAATTCGTGGCAGAGCCACCA
98053364 G
1 G
98053365 GACGCTTCCT
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
54 16 0.33
55 32 0.67
ACGTcount: A:0.36, C:0.21, G:0.26, T:0.16
Consensus pattern (54 bp):
GAACAGATAATGGGACAGAGCCACCAGATCAGATAATTCGTGGCAGAGCCACCA
Found at i:98054831 original size:24 final size:24
Alignment explanation
Indices: 98054799--98054872 Score: 121
Period size: 24 Copynumber: 3.1 Consensus size: 24
98054789 ACACAGTTCA
98054799 CCCTAATCAGCTCCTAAATCCTCT
1 CCCTAATCAGCTCCTAAATCCTCT
*
98054823 CCCTAATCAGCTCTTAAATCCTCT
1 CCCTAATCAGCTCCTAAATCCTCT
* *
98054847 CCCTTATCAGCTCCTAAATCTTCT
1 CCCTAATCAGCTCCTAAATCCTCT
98054871 CC
1 CC
98054873 AGACAGACTT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.23, C:0.41, G:0.04, T:0.32
Consensus pattern (24 bp):
CCCTAATCAGCTCCTAAATCCTCT
Found at i:98059540 original size:35 final size:33
Alignment explanation
Indices: 98059501--98059577 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 33
98059491 ATAATTTTAA
*
98059501 TAATAATAAACATCTAATAAATATATTTT-ACTAAT
1 TAATAATAAA-ATAT-A-AAATATATTTTCACTAAT
98059536 TAATAAT-AAATATAAAATATATTTTCACTAAT
1 TAATAATAAAATATAAAATATATTTTCACTAAT
98059568 T-ATACATAAA
1 TAATA-ATAAA
98059578 TAATACAAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
31 14 0.37
32 10 0.26
33 5 0.13
34 2 0.05
35 7 0.18
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (33 bp):
TAATAATAAAATATAAAATATATTTTCACTAAT
Found at i:98059554 original size:31 final size:32
Alignment explanation
Indices: 98059519--98059579 Score: 99
Period size: 31 Copynumber: 1.9 Consensus size: 32
98059509 AACATCTAAT
98059519 AAATATATTTT-ACTAATTAATA-ATAAATATA
1 AAATATATTTTCACTAATT-ATACATAAATATA
98059550 AAATATATTTTCACTAATTATACATAAATA
1 AAATATATTTTCACTAATTATACATAAATA
98059580 ATACAAATGT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
31 14 0.50
32 14 0.50
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (32 bp):
AAATATATTTTCACTAATTATACATAAATATA
Found at i:98059677 original size:15 final size:14
Alignment explanation
Indices: 98059656--98059724 Score: 66
Period size: 15 Copynumber: 4.5 Consensus size: 14
98059646 AATTTATTTC
98059656 ATAATATAATAATA
1 ATAATATAATAATA
*
98059670 ATTAATATAATCTATA
1 A-TAATATAAT-AATA
*
98059686 GCTTAATAATAATAATA
1 --ATAAT-ATAATAATA
98059703 ATAATAATAATAATA
1 ATAAT-ATAATAATA
98059718 ATAATAT
1 ATAATAT
98059725 TTTTTTACTT
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
14 3 0.07
15 28 0.61
16 3 0.07
17 7 0.15
18 5 0.11
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.38
Consensus pattern (14 bp):
ATAATATAATAATA
Found at i:98059697 original size:3 final size:3
Alignment explanation
Indices: 98059689--98059723 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
98059679 ATCTATAGCT
98059689 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
98059724 TTTTTTTACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:98065617 original size:46 final size:47
Alignment explanation
Indices: 98065524--98065838 Score: 186
Period size: 46 Copynumber: 6.7 Consensus size: 47
98065514 AATGAAAGCC
* * * * *
98065524 AGTGTAAGATCATATCTGGGACATGGCATCGGCGTTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GCCTTGAGATGTGAGCT
*
98065572 AGTATAAGA-CATGTCTGGGACAT-GCATCGCCTTCGAGATGTGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGCCTT-GAGATGTGAGCT
* * * *
98065618 ACTGTGAGA-CATGTCTAGGACAT-GCATCAG-CTATAAGATGT--G-T
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GCCT-TGAGATGTGAGCT
* *
98065661 AAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GGATATGTGAGAGCT
1 -AGTGTAAGACCATGTCTGGGACATGGCATC-GC-CTTGAGATGT--GAGCT
* * * * *
98065712 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-TTTTAATGGT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GCCTTGAGATGTGA-GCT
* * *** *
98065760 CAATGTAAGACCATGTCTAGGACATGGCATTAACTT--GATGGATGAGCC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGCCTTGAGAT-G-TGAGCT
***
98065808 AGTGTAAGACCATGTCTAAAACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
98065839 GCATCGTACC
Statistics
Matches: 210, Mismatches: 38, Indels: 39
0.73 0.13 0.14
Matches are distributed among these distances:
43 1 0.00
44 8 0.04
45 17 0.08
46 58 0.28
47 43 0.20
48 14 0.07
49 32 0.15
50 36 0.17
51 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGCCTTGAGATGTGAGCT
Found at i:98071152 original size:21 final size:21
Alignment explanation
Indices: 98071118--98071189 Score: 54
Period size: 21 Copynumber: 3.3 Consensus size: 21
98071108 ATCAGTATAA
* *
98071118 GACACATAAAGTGCCTAAAAC
1 GACACATGAGGTGCCTAAAAC
* * *
98071139 GACACATGAGGTGCTTGATAC
1 GACACATGAGGTGCCTAAAAC
* **
98071160 GGCACGCGAGGTGCCTGAAATAC
1 GACACATGAGGTGCCT-AAA-AC
98071183 GACACAT
1 GACACAT
98071190 AAAGTGCTTG
Statistics
Matches: 35, Mismatches: 14, Indels: 2
0.69 0.27 0.04
Matches are distributed among these distances:
21 28 0.80
22 1 0.03
23 6 0.17
ACGTcount: A:0.35, C:0.24, G:0.25, T:0.17
Consensus pattern (21 bp):
GACACATGAGGTGCCTAAAAC
Found at i:98072456 original size:31 final size:31
Alignment explanation
Indices: 98072421--98072494 Score: 123
Period size: 31 Copynumber: 2.4 Consensus size: 31
98072411 CTTATAGCTT
98072421 ACTTTACATTTCAATCCCTTTATCTACTCTA
1 ACTTTACATTTCAATCCCTTTATCTACTCTA
*
98072452 ACTTTACATTTCAATCCCTTTATCTATTCTA
1 ACTTTACATTTCAATCCCTTTATCTACTCTA
*
98072483 AC-TTAAATTTCA
1 ACTTTACATTTCA
98072495 TTCAATTAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
30 9 0.22
31 32 0.78
ACGTcount: A:0.28, C:0.26, G:0.00, T:0.46
Consensus pattern (31 bp):
ACTTTACATTTCAATCCCTTTATCTACTCTA
Found at i:98072758 original size:17 final size:18
Alignment explanation
Indices: 98072730--98072775 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
98072720 GCTTTCTGTT
98072730 TTCT-TTTC-TTTCTTC-
1 TTCTATTTCTTTTCTTCA
* *
98072745 TTTTGTTTCTTTTCTTCA
1 TTCTATTTCTTTTCTTCA
98072763 TTCTATTTCTTTT
1 TTCTATTTCTTTT
98072776 ATTTGTTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
15 3 0.12
16 4 0.16
17 7 0.28
18 11 0.44
ACGTcount: A:0.04, C:0.20, G:0.02, T:0.74
Consensus pattern (18 bp):
TTCTATTTCTTTTCTTCA
Found at i:98076367 original size:46 final size:46
Alignment explanation
Indices: 98076317--98076707 Score: 457
Period size: 46 Copynumber: 8.5 Consensus size: 46
98076307 CCATAGTGTA
* * * *
98076317 TTTCAACTATGGTCTTACTCATTTTCTGTCAGGTTGCCATGGTATC
1 TTTCAACCATGGTCTTACACATTTTCTATCATGTTGCCATGGTATC
* *** * * **
98076363 TTTCAACCATGGCCTTGTTCA-TTTCATGTTACATTGCCATGGTATC
1 TTTCAACCATGGTCTTACACATTTTC-TATCATGTTGCCATGGTATC
** * *
98076409 TTTCAACCATGGTCTTATTCA-TTCCCATCATGTTGCCATGGTATC
1 TTTCAACCATGGTCTTACACATTTTCTATCATGTTGCCATGGTATC
*** * *
98076454 TTTCAACCATGGTCTTA-TTTTTTTCATGTCACGTTGCCATGGTATC
1 TTTCAACCATGGTCTTACACATTTTC-TATCATGTTGCCATGGTATC
* *
98076500 TTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGGTATC
1 TTTCAACCATGGTCTTACACATTTTCTATCATGTTGCCATGGTATC
* *
98076546 TTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGGTATC
1 TTTCAACCATGGTCTTACACATTTTCTATCATGTTGCCATGGTATC
* * *
98076592 TTTCAACCATGGCCTTACACA-TTTCATATAATGTTGCCATGGTGTC
1 TTTCAACCATGGTCTTACACATTTTC-TATCATGTTGCCATGGTATC
* *
98076638 TTTCAACCATGGTCTTACACATTTTATATCATGTTACCATGGTATC
1 TTTCAACCATGGTCTTACACATTTTCTATCATGTTGCCATGGTATC
98076684 TTTCAACCATGGTCTTACACATTT
1 TTTCAACCATGGTCTTACACATTT
98076708 CATTTCAGAA
Statistics
Matches: 301, Mismatches: 38, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
44 1 0.00
45 42 0.14
46 251 0.83
47 7 0.02
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (46 bp):
TTTCAACCATGGTCTTACACATTTTCTATCATGTTGCCATGGTATC
Found at i:98081742 original size:48 final size:46
Alignment explanation
Indices: 98081645--98081818 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
98081635 GTTATTGTGT
* * * *
98081645 GCTAGTGTAAGACGTGTCTGGGACATGCATTGGCCAT--ATTATGAGA
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGG-CATCGA-GATGAGA
* *
98081691 GCTAGTATAAGACCATGTTTGGGACATGGCATCGGCATTGAGATGAGA
1 GCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCATCGAGATGAGA
* * * *
98081739 GCTAGTGTAAGAAATGTCTGGGACATGCATCAGCATCGAGATGTGA
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCATCGAGATGAGA
*
98081785 GCCAGTGTAAGACATGTTTGGGACATGCATCGGC
1 GCTAGTGTAAGACATGTTTGGGACATGCATCGGC
98081819 TAGGACACGG
Statistics
Matches: 109, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
46 58 0.53
47 27 0.25
48 23 0.21
49 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.25
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTTTGGGACATGCATCGGCATCGAGATGAGA
Found at i:98087908 original size:33 final size:34
Alignment explanation
Indices: 98087871--98087938 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
98087861 ATAAGTTTAA
* *
98087871 TTATTATTTAATA-TAAAATAATTTGAATATATT
1 TTATTATTTAATATTAAAATAATTTAAAAATATT
* *
98087904 TTATTATTTATTATTAATATAATTTAAAAATATT
1 TTATTATTTAATATTAAAATAATTTAAAAATATT
98087938 T
1 T
98087939 AAATTTTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
33 12 0.40
34 18 0.60
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.54
Consensus pattern (34 bp):
TTATTATTTAATATTAAAATAATTTAAAAATATT
Found at i:98088189 original size:21 final size:21
Alignment explanation
Indices: 98088155--98088207 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
98088145 CACTATTTCT
* * * *
98088155 AATCTCATCGCTACATTATCC
1 AATCTCACCACTACAGTAACC
*
98088176 AATCTCACCACTACAGTAACT
1 AATCTCACCACTACAGTAACC
98088197 AATCTCACCAC
1 AATCTCACCAC
98088208 CACCACTGTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.34, C:0.36, G:0.04, T:0.26
Consensus pattern (21 bp):
AATCTCACCACTACAGTAACC
Found at i:98090850 original size:31 final size:31
Alignment explanation
Indices: 98090815--98090876 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
98090805 ATAACAAAAG
98090815 GATGCCCAACTATTTGGTCCAACGAAAAATC
1 GATGCCCAACTATTTGGTCCAACGAAAAATC
98090846 GATGCCCAACTATTTGGTCCAACGAAAAATC
1 GATGCCCAACTATTTGGTCCAACGAAAAATC
98090877 CTCAGTAGGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.23
Consensus pattern (31 bp):
GATGCCCAACTATTTGGTCCAACGAAAAATC
Found at i:98091558 original size:19 final size:19
Alignment explanation
Indices: 98091534--98091571 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
98091524 GAAATGAATA
*
98091534 ATTTCAGGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
98091553 ATTTCAAGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
98091572 GCAATCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.32
Consensus pattern (19 bp):
ATTTCAAGCAAATAGGTTG
Found at i:98100190 original size:16 final size:14
Alignment explanation
Indices: 98100148--98100190 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 14
98100138 ATGTATATAT
98100148 ATAAAATAA-AGAAA
1 ATAAAATAACA-AAA
98100162 ATAAAATAACAAAA
1 ATAAAATAACAAAA
98100176 ATGAAAATGAACAAA
1 AT-AAAAT-AACAAA
98100191 GGGAATACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
14 14 0.54
15 6 0.23
16 6 0.23
ACGTcount: A:0.74, C:0.05, G:0.07, T:0.14
Consensus pattern (14 bp):
ATAAAATAACAAAA
Found at i:98101600 original size:31 final size:30
Alignment explanation
Indices: 98101550--98101613 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 30
98101540 ACTTATTTTA
*
98101550 TTGTTAATTTTGTTATTATTTTA-AGGCAT
1 TTGTTAATTTTATTATTATTTTAGAGGCAT
98101579 TTGTTAATTTATTATTATTATTTTAGAGGCAT
1 TTGTTAA-TT-TTATTATTATTTTAGAGGCAT
98101611 TTG
1 TTG
98101614 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
29 7 0.23
30 2 0.06
31 13 0.42
32 9 0.29
ACGTcount: A:0.25, C:0.03, G:0.14, T:0.58
Consensus pattern (30 bp):
TTGTTAATTTTATTATTATTTTAGAGGCAT
Found at i:98105987 original size:5 final size:6
Alignment explanation
Indices: 98105972--98106012 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
98105962 AATTATATGT
*
98105972 TTTTTA TTTTTA TTTTTA TTTTTAGA CTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTT--A TTTTTA TTTTTA TTT
98106013 ATTAAATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 26 0.84
8 5 0.16
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:98106064 original size:18 final size:18
Alignment explanation
Indices: 98106041--98106076 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
98106031 TTTATGATTG
98106041 GGTTGGGTAATTGGGTTA
1 GGTTGGGTAATTGGGTTA
*
98106059 GGTTGGGTACTTGGGTTA
1 GGTTGGGTAATTGGGTTA
98106077 ATATATATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.14, C:0.03, G:0.44, T:0.39
Consensus pattern (18 bp):
GGTTGGGTAATTGGGTTA
Found at i:98106457 original size:102 final size:102
Alignment explanation
Indices: 98106281--98106610 Score: 633
Period size: 102 Copynumber: 3.2 Consensus size: 102
98106271 AAAAGGGGTA
*
98106281 ACTTTAAGGAATAAACTGTACTTATTGGCTAGACTAAAAATTCTTAAAATTTTATGGTGAGAAGA
1 ACTTTAAGGAATAAACTGTACTTATTGGCTAGACCAAAAATTCTTAAAATTTTATGGTGAGAAGA
98106346 TATGTAAGTCTAGTTTCAGGGGAAATTAGTGGATCTT
66 TATGTAAGTCTAGTTTCAGGGGAAATTAGTGGATCTT
*
98106383 ACTTTAAGGAATAAATTGTACTTATTGGCTAGACCAAAAATTCTTAAAATTTTATGGTGAGAAGA
1 ACTTTAAGGAATAAACTGTACTTATTGGCTAGACCAAAAATTCTTAAAATTTTATGGTGAGAAGA
98106448 TATGTAAGTCTAGTTTCAGGGGAAATTAGTGGATCTT
66 TATGTAAGTCTAGTTTCAGGGGAAATTAGTGGATCTT
*
98106485 ACTTTAAGGAATAAATTGTACTTATTGGCTAGACCAAAAATTCTTAAAATTTTATGGTGAGAAGA
1 ACTTTAAGGAATAAACTGTACTTATTGGCTAGACCAAAAATTCTTAAAATTTTATGGTGAGAAGA
98106550 TATGTAAGTCTAGTTTCAGGGGAAATTAGTGGATCTT
66 TATGTAAGTCTAGTTTCAGGGGAAATTAGTGGATCTT
98106587 ACTTTAAGGAATAAACTGTACTTA
1 ACTTTAAGGAATAAACTGTACTTA
98106611 ACAGCTTGGC
Statistics
Matches: 225, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
102 225 1.00
ACGTcount: A:0.36, C:0.09, G:0.20, T:0.35
Consensus pattern (102 bp):
ACTTTAAGGAATAAACTGTACTTATTGGCTAGACCAAAAATTCTTAAAATTTTATGGTGAGAAGA
TATGTAAGTCTAGTTTCAGGGGAAATTAGTGGATCTT
Found at i:98112449 original size:37 final size:37
Alignment explanation
Indices: 98112388--98112580 Score: 287
Period size: 37 Copynumber: 5.2 Consensus size: 37
98112378 GCTCAGACGA
* * *
98112388 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
98112425 AATCTCCACACGTAGTCATTGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* *
98112462 ACTCTCCACACATAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
98112499 AATCTCCACACGTAGTCATCGGGTCTTACCCGAACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* * *
98112536 ACTCTCCACACATAGTCATCAGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
98112573 ATTCTCCA
1 AATCTCCA
98112581 AGTTTCATGT
Statistics
Matches: 141, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 141 1.00
ACGTcount: A:0.26, C:0.33, G:0.16, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:98112784 original size:47 final size:47
Alignment explanation
Indices: 98112732--98113011 Score: 434
Period size: 47 Copynumber: 6.0 Consensus size: 47
98112722 TTTCGCACTA
* * * * *
98112732 GCCATTCAGCTTTACCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * *
98112779 GCCATTCGGCCTTATCACACATATGCATGCTCACGTTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
98112826 GCCATTCGGCCTTATCACATATATGCATGTTCACGTTCATCACATAG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
98112873 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
98112920 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * **
98112967 GCCATTCGGCCTTCTCACATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
98113012 AAAATCCTAA
Statistics
Matches: 216, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 216 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:98112796 original size:25 final size:25
Alignment explanation
Indices: 98112768--98112843 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
98112758 ATGTTCATAT
98112768 TCACCACATTGGCCATTCGGCCTTA
1 TCACCACATTGGCCATTCGGCCTTA
* * *
98112793 TCA-CACATAT-G-CATGC-TCACGT-
1 TCACCACAT-TGGCCATTCGGC-CTTA
*
98112815 TCATCACATTGGCCATTCGGCCTTA
1 TCACCACATTGGCCATTCGGCCTTA
98112840 TCAC
1 TCAC
98112844 ATATATGCAT
Statistics
Matches: 37, Mismatches: 7, Indels: 14
0.64 0.12 0.24
Matches are distributed among these distances:
22 5 0.14
23 12 0.32
24 12 0.32
25 8 0.22
ACGTcount: A:0.22, C:0.34, G:0.14, T:0.29
Consensus pattern (25 bp):
TCACCACATTGGCCATTCGGCCTTA
Found at i:98112844 original size:22 final size:22
Alignment explanation
Indices: 98112817--98112939 Score: 65
Period size: 22 Copynumber: 5.3 Consensus size: 22
98112807 GCTCACGTTC
98112817 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
98112839 ATCACATATATG-CATGTTC-ACGTT
1 ATCACAT-T-GGCCA--TTCGGCCTT
*
98112863 CATCACATAGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
98112886 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
98112910 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
98112933 ATCACAT
1 ATCACAT
98112940 ATATGCATGT
Statistics
Matches: 73, Mismatches: 14, Indels: 28
0.63 0.12 0.24
Matches are distributed among these distances:
22 27 0.37
23 13 0.18
24 13 0.18
25 20 0.27
ACGTcount: A:0.25, C:0.28, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:98117097 original size:27 final size:27
Alignment explanation
Indices: 98117067--98117124 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
98117057 AATTGAAGAC
98117067 AAAGTTCAGATTATTCAAGATTGCATG
1 AAAGTTCAGATTATTCAAGATTGCATG
*
98117094 AAAGTTCAGATTATTCGAGATTGCATG
1 AAAGTTCAGATTATTCAAGATTGCATG
98117121 AAAG
1 AAAG
98117125 CTGCATTTGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.38, C:0.10, G:0.21, T:0.31
Consensus pattern (27 bp):
AAAGTTCAGATTATTCAAGATTGCATG
Found at i:98118958 original size:27 final size:27
Alignment explanation
Indices: 98118925--98118979 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
98118915 TAACTAGTTT
*
98118925 ATAACATCTTTACTTCATTTCATTTAA
1 ATAACATCTTTAATTCATTTCATTTAA
98118952 ATAACATCTTTAATTCATTTCATTTAA
1 ATAACATCTTTAATTCATTTCATTTAA
98118979 A
1 A
98118980 CTCTATACAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.36, C:0.16, G:0.00, T:0.47
Consensus pattern (27 bp):
ATAACATCTTTAATTCATTTCATTTAA
Found at i:98119445 original size:35 final size:34
Alignment explanation
Indices: 98119399--98119559 Score: 187
Period size: 35 Copynumber: 4.6 Consensus size: 34
98119389 CCTCATTGAA
* *
98119399 ATACCATACCTACATTTCACAACTCCGAATAGATT
1 ATACCATACCTACATTTCACAACTCAGTAT-GATT
*
98119434 ATACCATACCTACATTTCACAACTCAGTATGGTT
1 ATACCATACCTACATTTCACAACTCAGTATGATT
* * *
98119468 AATACCATACCTACATCTGACAACTCAGTATGGATG
1 -ATACCATACCTACATTTCACAACTCAGTAT-GATT
* *
98119504 ATACCATACCTACGTTTCACAACTCAGTATGGTT
1 ATACCATACCTACATTTCACAACTCAGTATGATT
* * *
98119538 AATACTATAACTACGTTTCACA
1 -ATACCATACCTACATTTCACA
98119560 TTTTTCCATG
Statistics
Matches: 109, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
34 5 0.05
35 102 0.94
36 2 0.02
ACGTcount: A:0.35, C:0.26, G:0.09, T:0.30
Consensus pattern (34 bp):
ATACCATACCTACATTTCACAACTCAGTATGATT
Found at i:98119511 original size:70 final size:70
Alignment explanation
Indices: 98119398--98119551 Score: 227
Period size: 70 Copynumber: 2.2 Consensus size: 70
98119388 TCCTCATTGA
* * *
98119398 AATACCATACCTACATTTCACAACTCCGAATAGATTATACCATACCTACATTTCACAACTCAGTA
1 AATACCATACCTACATCTCACAACTCAGAATAGATGATACCATACCTACATTTCACAACTCAGTA
98119463 TGGTT
66 TGGTT
* * * *
98119468 AATACCATACCTACATCTGACAACTCAGTATGGATGATACCATACCTACGTTTCACAACTCAGTA
1 AATACCATACCTACATCTCACAACTCAGAATAGATGATACCATACCTACATTTCACAACTCAGTA
98119533 TGGTT
66 TGGTT
* *
98119538 AATACTATAACTAC
1 AATACCATACCTAC
98119552 GTTTCACATT
Statistics
Matches: 75, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
70 75 1.00
ACGTcount: A:0.36, C:0.26, G:0.09, T:0.29
Consensus pattern (70 bp):
AATACCATACCTACATCTCACAACTCAGAATAGATGATACCATACCTACATTTCACAACTCAGTA
TGGTT
Found at i:98129041 original size:40 final size:40
Alignment explanation
Indices: 98128981--98129207 Score: 323
Period size: 40 Copynumber: 5.7 Consensus size: 40
98128971 CAATTGAGGA
*
98128981 TTATATCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTT-
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
98129020 TCTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 T-TATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
*
98129061 TTATTTCTGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* *
98129101 TTATTTCTGGGTTAAG-CCCTGAAGGCATTCGTGCTGGTCG
1 TTATTTCCGGGTTAAGTCCC-GAAGGCATTCGTGCTGGTTG
* * *
98129141 CTATTTCTGGGTTAAGTCCCGAAGGCATTTGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
** * *
98129181 TTACATCCGGGCTAAATCCCGAAGGCA
1 TTATTTCCGGGTTAAGTCCCGAAGGCA
98129208 ATTGGGTTGG
Statistics
Matches: 172, Mismatches: 12, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 4 0.02
40 164 0.95
41 4 0.02
ACGTcount: A:0.17, C:0.21, G:0.29, T:0.33
Consensus pattern (40 bp):
TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
Found at i:98130163 original size:35 final size:35
Alignment explanation
Indices: 98130117--98130242 Score: 198
Period size: 35 Copynumber: 3.6 Consensus size: 35
98130107 CCTCATTGAA
* *
98130117 ATACCATACCTACATTTCACAACTCCGTATGGATG
1 ATACCATACCTACGTTTCACAACTCAGTATGGATG
* * *
98130152 ATACCTTACCTACGTTTCACAACTCAGTATGGTTA
1 ATACCATACCTACGTTTCACAACTCAGTATGGATG
98130187 ATACCATACCTACGTTTCACAACTCAGTATGGATG
1 ATACCATACCTACGTTTCACAACTCAGTATGGATG
*
98130222 ATACGATACCTACGTTTCACA
1 ATACCATACCTACGTTTCACA
98130243 CTTTCCCATG
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 82 1.00
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.30
Consensus pattern (35 bp):
ATACCATACCTACGTTTCACAACTCAGTATGGATG
Found at i:98132434 original size:34 final size:35
Alignment explanation
Indices: 98132349--98132437 Score: 101
Period size: 35 Copynumber: 2.6 Consensus size: 35
98132339 GACTATCTCT
*
98132349 TATGAGCATC-GGTGTGTTTTGGAGGGATTGGCTCA
1 TATGAGCATCTGGTGTG-TTTGGAGGGATTGACTCA
* * * *
98132384 TATGAGCTTTTTGTGTGTTTGGAGGGATT-ACTCG
1 TATGAGCATCTGGTGTGTTTGGAGGGATTGACTCA
*
98132418 TGTGAGCATCTGGTGTGTTT
1 TATGAGCATCTGGTGTGTTT
98132438 TGGTTGAACT
Statistics
Matches: 44, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
34 19 0.43
35 20 0.45
36 5 0.11
ACGTcount: A:0.15, C:0.10, G:0.35, T:0.40
Consensus pattern (35 bp):
TATGAGCATCTGGTGTGTTTGGAGGGATTGACTCA
Found at i:98135199 original size:18 final size:17
Alignment explanation
Indices: 98135165--98135206 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
98135155 ATATGATTTT
*
98135165 TTCAAAAACTCTCAAAA
1 TTCAAAAACTATCAAAA
*
98135182 TTCAAAAACATATGAAAA
1 TTCAAAAAC-TATCAAAA
98135200 TT-AAAAA
1 TTCAAAAA
98135207 AATTGTAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 14 0.64
18 8 0.36
ACGTcount: A:0.60, C:0.14, G:0.02, T:0.24
Consensus pattern (17 bp):
TTCAAAAACTATCAAAA
Found at i:98139966 original size:18 final size:17
Alignment explanation
Indices: 98139935--98139977 Score: 52
Period size: 19 Copynumber: 2.5 Consensus size: 17
98139925 TTCCTATGTG
98139935 GGGCCCAAGACCCA-TT
1 GGGCCCAAGACCCAGTT
98139951 GGGCCCACACGACCCAGTT
1 GGGCCCA-A-GACCCAGTT
*
98139970 CGGCCCAA
1 GGGCCCAA
98139978 AATGGCCCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 7 0.30
17 1 0.04
18 7 0.30
19 8 0.35
ACGTcount: A:0.23, C:0.42, G:0.26, T:0.09
Consensus pattern (17 bp):
GGGCCCAAGACCCAGTT
Found at i:98147007 original size:20 final size:18
Alignment explanation
Indices: 98146960--98147067 Score: 62
Period size: 20 Copynumber: 5.8 Consensus size: 18
98146950 CAAGATAAAC
98146960 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
98146977 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
** *
98146997 ATTAAATTAATAAAATACT
1 ATTAAATTAAT-ATTTAAT
*
98147016 ATTAAGATAAATA-TT-AT
1 ATTAA-ATTAATATTTAAT
*
98147033 ATTAAATTTAATATTAAATCT
1 ATTAAA-TTAATATTTAA--T
*
98147054 ATTAAAATAATATT
1 ATTAAATTAATATT
98147068 GTTTTTAGAA
Statistics
Matches: 70, Mismatches: 10, Indels: 19
0.71 0.10 0.19
Matches are distributed among these distances:
16 1 0.01
17 19 0.27
18 3 0.04
19 12 0.17
20 28 0.40
21 7 0.10
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:98152421 original size:49 final size:49
Alignment explanation
Indices: 98152272--98152493 Score: 179
Period size: 49 Copynumber: 4.7 Consensus size: 49
98152262 TGATATGTGT
* * * * * *
98152272 GCCAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATATGCAA
1 GCCAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGGAA
* * * * * *
98152320 GCCAGTGTAAGACTTGTCTGGAACATGGCATCGGC-TTG--ACAT-G-T
1 GCCAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGGAA
* * *
98152364 GTCAGTGTAAGACCTGTATGGGACATGGCGTCGACATCGATAGAT-GAGA
1 GCCAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGGA-A
* * * * *
98152413 GCCAGTGTAAGACTTGTCTGGGATATGGCATCGGCCTCGATATATGGAA
1 GCCAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGGAA
* * *
98152462 GTCAGTGTAAGACCTCTCTGGGACATGACATC
1 GCCAGTGTAAGACCTGTCTGGGACATGGCATC
98152494 ACTTAGATGT
Statistics
Matches: 139, Mismatches: 28, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
44 29 0.21
45 2 0.01
46 3 0.02
47 4 0.03
48 26 0.19
49 73 0.53
50 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (49 bp):
GCCAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGGAA
Found at i:98152432 original size:93 final size:92
Alignment explanation
Indices: 98152269--98152447 Score: 243
Period size: 93 Copynumber: 1.9 Consensus size: 92
98152259 GGGTGATATG
* * * *
98152269 TGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATGCAAGCCAGTGTAAGACT
1 TGTGCCAGTGTAAGACATGTATGGGACATGCATCGACATCGAGAGATGCAAGCCAGTGTAAGACT
98152334 TGTCTGGAACATGGCATCGGCTTGACA
66 TGTCTGGAACATGGCATCGGCTTGACA
* * * *
98152361 TGTGTCAGTGTAAGACCTGTATGGGACATGGCGTCGACATCGATAGATG-AGAGCCAGTGTAAGA
1 TGTGCCAGTGTAAGACATGTATGGGACAT-GCATCGACATCGAGAGATGCA-AGCCAGTGTAAGA
* *
98152425 CTTGTCTGGGATATGGCATCGGC
64 CTTGTCTGGAACATGGCATCGGC
98152448 CTCGATATAT
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
92 27 0.36
93 48 0.64
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.25
Consensus pattern (92 bp):
TGTGCCAGTGTAAGACATGTATGGGACATGCATCGACATCGAGAGATGCAAGCCAGTGTAAGACT
TGTCTGGAACATGGCATCGGCTTGACA
Found at i:98152501 original size:93 final size:91
Alignment explanation
Indices: 98152319--98152543 Score: 213
Period size: 93 Copynumber: 2.4 Consensus size: 91
98152309 GAGATATGCA
* * *
98152319 AGCCAGTGTAAGACTTGTCTGGAACATGGCATCGGCTTGACATGTGTCAGTGTAAGACCTGTATG
1 AGCCAGTGTAAGACTTGTCTGGAACATGGCATCGGCTCGACATGAGTCAGTGTAAGACCTCTATG
* *
98152384 GGACATGGCGTCGACATCGATAGATGAG
66 GGACATGACATCGACAT--ATAGATGAG
* * *
98152412 AGCCAGTGTAAGACTTGTCTGGGATATGGCATCGGCCTCGATATATGGAAGTCAGTGTAAGACCT
1 AGCCAGTGTAAGACTTGTCTGGAACATGGCATCGG-CTCG--ACAT-G-AGTCAGTGTAAGACCT
* *
98152477 CTCTGGGACATGACATC-AC-T-TAGATGTGTG
61 CTATGGGACATGACATCGACATATAGA--TGAG
* * * *
98152507 ATCTAGTGTAAGACCATGTTTGGAACATGGCATCGGC
1 AGCCAGTGTAAGA-CTTGTCTGGAACATGGCATCGGC
98152544 ATCATATATA
Statistics
Matches: 108, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
93 37 0.34
94 3 0.03
95 15 0.14
96 22 0.20
97 3 0.03
98 28 0.26
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (91 bp):
AGCCAGTGTAAGACTTGTCTGGAACATGGCATCGGCTCGACATGAGTCAGTGTAAGACCTCTATG
GGACATGACATCGACATATAGATGAG
Found at i:98156302 original size:63 final size:64
Alignment explanation
Indices: 98156222--98156404 Score: 194
Period size: 66 Copynumber: 2.8 Consensus size: 64
98156212 AGACATTATG
*
98156222 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACG-GATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
98156285 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
98156350 AA
63 AA
* * * *
98156352 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
98156405 CGAACTATAT
Statistics
Matches: 98, Mismatches: 16, Indels: 12
0.78 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 39 0.40
64 5 0.05
65 6 0.06
66 40 0.41
67 5 0.05
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:98161387 original size:42 final size:42
Alignment explanation
Indices: 98161328--98161414 Score: 174
Period size: 42 Copynumber: 2.1 Consensus size: 42
98161318 TTACAAAGAA
98161328 AAAGAAGTTTAATTTATCATGAGTGATATATTATAAAACTTG
1 AAAGAAGTTTAATTTATCATGAGTGATATATTATAAAACTTG
98161370 AAAGAAGTTTAATTTATCATGAGTGATATATTATAAAACTTG
1 AAAGAAGTTTAATTTATCATGAGTGATATATTATAAAACTTG
98161412 AAA
1 AAA
98161415 TGCCTAAATT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.45, C:0.05, G:0.14, T:0.37
Consensus pattern (42 bp):
AAAGAAGTTTAATTTATCATGAGTGATATATTATAAAACTTG
Found at i:98164059 original size:21 final size:21
Alignment explanation
Indices: 98164033--98164073 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
98164023 TCTTAATTTA
*
98164033 TATAATATAAAGAACTTTGGC
1 TATAATATAAACAACTTTGGC
98164054 TATAATATAAACAACTTTGG
1 TATAATATAAACAACTTTGG
98164074 AATGGCAGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.34
Consensus pattern (21 bp):
TATAATATAAACAACTTTGGC
Found at i:98168110 original size:16 final size:17
Alignment explanation
Indices: 98168089--98168129 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
98168079 AGCATATCTT
*
98168089 ATATCATATTT-TTATC
1 ATATCATATTTCATATC
98168105 ATATCATATTTCATATC
1 ATATCATATTTCATATC
*
98168122 ATGTCATA
1 ATATCATA
98168130 GCACATTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 11 0.50
17 11 0.50
ACGTcount: A:0.34, C:0.15, G:0.02, T:0.49
Consensus pattern (17 bp):
ATATCATATTTCATATC
Found at i:98171152 original size:54 final size:55
Alignment explanation
Indices: 98171083--98171193 Score: 215
Period size: 54 Copynumber: 2.0 Consensus size: 55
98171073 CCTATCCAAC
98171083 AACCATCCACTAGTCTTTTCTTGAACCAAAGTCTCTACCGGAACTAAATTTTTCT
1 AACCATCCACTAGTCTTTTCTTGAACCAAAGTCTCTACCGGAACTAAATTTTTCT
98171138 AACCAT-CACTAGTCTTTTCTTGAACCAAAGTCTCTACCGGAACTAAATTTTTCT
1 AACCATCCACTAGTCTTTTCTTGAACCAAAGTCTCTACCGGAACTAAATTTTTCT
98171192 AA
1 AA
98171194 TGGTGGGGCG
Statistics
Matches: 56, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
54 50 0.89
55 6 0.11
ACGTcount: A:0.31, C:0.26, G:0.09, T:0.34
Consensus pattern (55 bp):
AACCATCCACTAGTCTTTTCTTGAACCAAAGTCTCTACCGGAACTAAATTTTTCT
Found at i:98182311 original size:27 final size:27
Alignment explanation
Indices: 98182273--98182328 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
98182263 TAAAACTTGT
98182273 ATGAAATTCAATTAATATATTATTTTA
1 ATGAAATTCAATTAATATATTATTTTA
98182300 ATGAAATTCAATTAATATATTATTTTA
1 ATGAAATTCAATTAATATATTATTTTA
98182327 AT
1 AT
98182329 TGTATCCTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.48
Consensus pattern (27 bp):
ATGAAATTCAATTAATATATTATTTTA
Done.