Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 294 of 349
Found at i:98424148 original size:70 final size:70
Alignment explanation
Indices: 98424021--98424197 Score: 239
Period size: 70 Copynumber: 2.5 Consensus size: 70
98424011 CACGATTCAC
* * * *
98424021 AACTCAGTATGGTTAATACCATACCTACGTTTCACAACTCGGTATGGGAAATGCCATACCTACGT
1 AACTCAGTATGGATAATACCATACCTACGTATCATAACTCGGTATGGGAAATACCATACCTACGT
*
98424086 ATTAT
66 ATCAT
* *
98424091 AGCTTAGTATGGATAATACCATACCTACGTATCATAACTCGGTAT-GGATAATACCATACCTACG
1 AACTCAGTATGGATAATACCATACCTACGTATCATAACTCGGTATGGGA-AATACCATACCTACG
*
98424155 TGTCAT
65 TATCAT
* * *
98424161 AACTCAGTATGGATAATACTATACCTACATGTCATAA
1 AACTCAGTATGGATAATACCATACCTACGTATCATAA
98424198 TTTTTCCATG
Statistics
Matches: 93, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
69 3 0.03
70 90 0.97
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (70 bp):
AACTCAGTATGGATAATACCATACCTACGTATCATAACTCGGTATGGGAAATACCATACCTACGT
ATCAT
Found at i:98424848 original size:23 final size:22
Alignment explanation
Indices: 98424822--98424865 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
98424812 TAATTCATCA
* *
98424822 TAAAATTTCAGAACTCATCCATG
1 TAAAATTCCA-AAATCATCCATG
*
98424845 TAAACTTCCAAAATCATCCAT
1 TAAAATTCCAAAATCATCCAT
98424866 ATAATAAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.41, C:0.25, G:0.05, T:0.30
Consensus pattern (22 bp):
TAAAATTCCAAAATCATCCATG
Found at i:98426788 original size:27 final size:27
Alignment explanation
Indices: 98426740--98426898 Score: 193
Period size: 27 Copynumber: 5.9 Consensus size: 27
98426730 GCGAGGCTGC
* *
98426740 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
98426767 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
98426793 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
98426820 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
98426847 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
98426874 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
98426899 GACGTTTCCT
Statistics
Matches: 117, Mismatches: 7, Indels: 16
0.84 0.05 0.11
Matches are distributed among these distances:
26 10 0.09
27 102 0.87
28 5 0.04
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.18
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:98426833 original size:54 final size:54
Alignment explanation
Indices: 98426758--98426898 Score: 248
Period size: 54 Copynumber: 2.6 Consensus size: 54
98426748 GTGACGAAGT
*
98426758 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
98426812 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
98426866 CACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
98426899 GACGTTTCCT
Statistics
Matches: 83, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
53 5 0.06
54 78 0.94
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.17
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:98428545 original size:26 final size:26
Alignment explanation
Indices: 98428513--98428620 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
98428503 TGAAATGCCC
*
98428513 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
98428539 ATTATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
98428565 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
98428591 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
98428617 ATCA
1 ATCA
98428621 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:98430629 original size:47 final size:47
Alignment explanation
Indices: 98430560--98430651 Score: 184
Period size: 47 Copynumber: 2.0 Consensus size: 47
98430550 CTATTCAGAG
98430560 ATGCATCACTGTACATAACATACGGTATACCTGATTCTGGCTGAGCT
1 ATGCATCACTGTACATAACATACGGTATACCTGATTCTGGCTGAGCT
98430607 ATGCATCACTGTACATAACATACGGTATACCTGATTCTGGCTGAG
1 ATGCATCACTGTACATAACATACGGTATACCTGATTCTGGCTGAG
98430652 TTAACACTGG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (47 bp):
ATGCATCACTGTACATAACATACGGTATACCTGATTCTGGCTGAGCT
Found at i:98434470 original size:24 final size:24
Alignment explanation
Indices: 98434443--98434519 Score: 68
Period size: 24 Copynumber: 3.2 Consensus size: 24
98434433 TCGTCTTTAG
98434443 TATAAAATTTATAATGCCTTGACA
1 TATAAAATTTATAATGCCTTGACA
* * * * *
98434467 TAT-ATATATGAGTAATCGTCTTTA-G
1 TATAAAAT-TTA-TAAT-GCCTTGACA
98434492 TATAAAATTTATAATGCCTTGACA
1 TATAAAATTTATAATGCCTTGACA
98434516 TATA
1 TATA
98434520 TATACTACAT
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
23 8 0.21
24 13 0.34
25 9 0.24
26 8 0.21
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.40
Consensus pattern (24 bp):
TATAAAATTTATAATGCCTTGACA
Found at i:98434482 original size:49 final size:49
Alignment explanation
Indices: 98434426--98434523 Score: 196
Period size: 49 Copynumber: 2.0 Consensus size: 49
98434416 AGGTAAGTTT
98434426 TGAGTAATCGTCTTTAGTATAAAATTTATAATGCCTTGACATATATATA
1 TGAGTAATCGTCTTTAGTATAAAATTTATAATGCCTTGACATATATATA
98434475 TGAGTAATCGTCTTTAGTATAAAATTTATAATGCCTTGACATATATATA
1 TGAGTAATCGTCTTTAGTATAAAATTTATAATGCCTTGACATATATATA
98434524 CTACATGAAT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.37, C:0.10, G:0.12, T:0.41
Consensus pattern (49 bp):
TGAGTAATCGTCTTTAGTATAAAATTTATAATGCCTTGACATATATATA
Found at i:98434900 original size:39 final size:40
Alignment explanation
Indices: 98434789--98434901 Score: 185
Period size: 40 Copynumber: 2.9 Consensus size: 40
98434779 TTATTTGATG
98434789 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
98434829 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
1 TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
* *
98434869 TGGAA-TGATATCCGGG-TTAAAAACCTGCAGGCT
1 TGGAATTG-TATCCGGGCTTAAAGACCCGCAGGCT
98434902 ATGCTAGATA
Statistics
Matches: 70, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
39 17 0.24
40 53 0.76
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
TGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGC
Found at i:98438249 original size:35 final size:35
Alignment explanation
Indices: 98438160--98438337 Score: 187
Period size: 35 Copynumber: 5.1 Consensus size: 35
98438150 CCACGATTCG
* * *
98438160 TAACTCAGTATGGTTAATACCATACCTACGTTTCG
1 TAACTCAGTATGGATAATACCATACCTACGTATCA
* * *
98438195 CAACTCGGTATAGGA-AATACCATACCTACGTATTA
1 TAACTCAGTAT-GGATAATACCATACCTACGTATCA
* * *
98438230 TAGCTCAATATGGATAATACCATACCTACATATCA
1 TAACTCAGTATGGATAATACCATACCTACGTATCA
* * *
98438265 TAACTTAGTATGGATAATACCATACCTATGTGTCA
1 TAACTCAGTATGGATAATACCATACCTACGTATCA
* * * * *
98438300 TAACTCGGGATGGATAACACCATACCTACATGTCA
1 TAACTCAGTATGGATAATACCATACCTACGTATCA
98438335 TAA
1 TAA
98438338 ATTTTCCATG
Statistics
Matches: 117, Mismatches: 24, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
34 3 0.03
35 112 0.96
36 2 0.02
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.29
Consensus pattern (35 bp):
TAACTCAGTATGGATAATACCATACCTACGTATCA
Found at i:98443755 original size:117 final size:124
Alignment explanation
Indices: 98443609--98443860 Score: 322
Period size: 127 Copynumber: 2.0 Consensus size: 124
98443599 TGCAATAGCA
* *
98443609 AATTAAATAATCAAATTAATGTATTTACTTAG-C-A-T-TTT-ACAAAGAGGTTCATCTGAATAA
1 AATTAAATAATCAAATTAATGTATGTACTTAGCCTATTATTTCACAAAGAGGTTCATCTGAAGAA
* * *
98443669 TATTGTGATACCATCCAATTAAAATAAGATGGA-TTACCATATTATATTTC-AC-TGTTT
66 CATTGTGATACCATCCAATTAAAATAAAATGAATTTACCATATTATATTTCAACAT-TTT
* *
98443726 AATTAAATAATCAAATTAATGTATGTACTTAGCTCCTATTGACATTTCACCAATAGGTTCATCTG
1 AATTAAATAATCAAATTAATGTATGTACTTAG--CCTATT---ATTTCACAAAGAGGTTCATCTG
*
98443791 AAGAACATTGTGATACCATCCAATTAAAATAAAATGAATTTACCATATTATTTTTCAACATTTT
61 AAGAACATTGTGATACCATCCAATTAAAATAAAATGAATTTACCATATTATATTTCAACATTTT
98443855 AATTAA
1 AATTAA
98443861 TTTAAAATTA
Statistics
Matches: 114, Mismatches: 8, Indels: 14
0.84 0.06 0.10
Matches are distributed among these distances:
117 31 0.27
120 1 0.01
121 1 0.01
122 1 0.01
126 3 0.03
127 49 0.43
128 16 0.14
129 11 0.10
130 1 0.01
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (124 bp):
AATTAAATAATCAAATTAATGTATGTACTTAGCCTATTATTTCACAAAGAGGTTCATCTGAAGAA
CATTGTGATACCATCCAATTAAAATAAAATGAATTTACCATATTATATTTCAACATTTT
Found at i:98449533 original size:27 final size:28
Alignment explanation
Indices: 98449516--98449641 Score: 209
Period size: 28 Copynumber: 4.5 Consensus size: 28
98449506 ATATTAAGTC
*
98449516 CGCACACTCAGTGCTATATAATCAA-CT
1 CGCACACTTAGTGCTATATAATCAAGCT
*
98449543 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAGCT
*
98449571 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTATATAATCAAGCT
*
98449599 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTATATAATCAAGCT
98449627 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
98449642 GTACAATTTA
Statistics
Matches: 95, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 24 0.25
28 71 0.75
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAGCT
Found at i:98449579 original size:28 final size:28
Alignment explanation
Indices: 98449516--98449666 Score: 205
Period size: 28 Copynumber: 5.4 Consensus size: 28
98449506 ATATTAAGTC
*
98449516 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
98449543 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
98449571 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
98449599 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
98449627 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
98449656 CGCACACTTAG
1 CGCACACTTAG
98449667 CGCCAATCTC
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.19
28 76 0.67
29 15 0.13
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:98456117 original size:46 final size:46
Alignment explanation
Indices: 98456016--98456142 Score: 166
Period size: 46 Copynumber: 2.7 Consensus size: 46
98456006 ATGAGGCATT
* * *
98456016 CGAACTCGTTGAGTTGCGTTCCAAGTTCACCTATGGATGCAAGCATC
1 CGAACTCGTTGAGTTGCGTTCCGAGTTCA-TTATGGATGCAAGCACC
*
98456063 CGAACTCGTTGAGTTGTGTTCCGAGTTCATTATGGATGCGAA-CACC
1 CGAACTCGTTGAGTTGCGTTCCGAGTTCATTATGGATGC-AAGCACC
* * *
98456109 CGAGCTCGTTAAGTTGCGTTTCGAGTTCATTATG
1 CGAACTCGTTGAGTTGCGTTCCGAGTTCATTATG
98456143 TGTGAGATTA
Statistics
Matches: 71, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
46 42 0.59
47 29 0.41
ACGTcount: A:0.21, C:0.22, G:0.25, T:0.31
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGCGTTCCGAGTTCATTATGGATGCAAGCACC
Found at i:98459033 original size:15 final size:16
Alignment explanation
Indices: 98459008--98459041 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
98458998 AAGATGAAGT
*
98459008 GTTTGATAAATTTAAA
1 GTTTGATAAATCTAAA
98459024 GTTT-ATAAATCTAAA
1 GTTTGATAAATCTAAA
98459039 GTT
1 GTT
98459042 GAACTTCAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.41, C:0.03, G:0.12, T:0.44
Consensus pattern (16 bp):
GTTTGATAAATCTAAA
Found at i:98463633 original size:9 final size:9
Alignment explanation
Indices: 98463621--98463687 Score: 70
Period size: 9 Copynumber: 7.9 Consensus size: 9
98463611 TTTAAAAACC
*
98463621 ATAAAAATA
1 ATAAAAATT
98463630 ATAAAAA--
1 ATAAAAATT
98463637 -TAAAAATT
1 ATAAAAATT
98463645 ATAAAAATT
1 ATAAAAATT
*
98463654 ATGAAAATT
1 ATAAAAATT
* *
98463663 ATAATAACT
1 ATAAAAATT
98463672 ATAAAAA-T
1 ATAAAAATT
98463680 ATAAAAAT
1 ATAAAAAT
98463688 GCAAATATAT
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
6 6 0.12
8 8 0.16
9 35 0.71
ACGTcount: A:0.69, C:0.01, G:0.01, T:0.28
Consensus pattern (9 bp):
ATAAAAATT
Found at i:98463636 original size:18 final size:18
Alignment explanation
Indices: 98463613--98463686 Score: 75
Period size: 18 Copynumber: 4.3 Consensus size: 18
98463603 TATTTTCATT
* *
98463613 TAAAAACCATAAAAATAA
1 TAAAAACTATAAAAATTA
98463631 T-AAAA--ATAAAAATTA
1 TAAAAACTATAAAAATTA
* *
98463646 TAAAAATTATGAAAATTA
1 TAAAAACTATAAAAATTA
*
98463664 TAATAACTATAAAAA-TA
1 TAAAAACTATAAAAATTA
98463681 TAAAAA
1 TAAAAA
98463687 TGCAAATATA
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
15 10 0.21
16 4 0.09
17 11 0.23
18 22 0.47
ACGTcount: A:0.69, C:0.04, G:0.01, T:0.26
Consensus pattern (18 bp):
TAAAAACTATAAAAATTA
Found at i:98464224 original size:22 final size:22
Alignment explanation
Indices: 98464182--98464250 Score: 74
Period size: 21 Copynumber: 3.3 Consensus size: 22
98464172 TTTTGTGCAC
* * *
98464182 TTTTCTATATTTTCAATAAT-T
1 TTTTATATATTTTTAATAATAA
*
98464203 TTTTGTA-ATTTTTAA-AATAA
1 TTTTATATATTTTTAATAATAA
98464223 TTTTATATATTTTTAATAAT-A
1 TTTTATATATTTTTAATAATAA
98464244 TTTTATA
1 TTTTATA
98464251 ATGATTATTA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
19 3 0.07
20 13 0.32
21 22 0.54
22 3 0.07
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (22 bp):
TTTTATATATTTTTAATAATAA
Found at i:98467142 original size:10 final size:9
Alignment explanation
Indices: 98467122--98467146 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
98467112 CTGTAATCAT
98467122 AAAAAATAA
1 AAAAAATAA
98467131 AAAAAATAA
1 AAAAAATAA
98467140 AAAAAAT
1 AAAAAAT
98467147 TACACCTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (9 bp):
AAAAAATAA
Found at i:98470884 original size:22 final size:22
Alignment explanation
Indices: 98470859--98470902 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
98470849 TTATTTTGAC
* * *
98470859 TTTATTTTTAAATTTTTAAAGA
1 TTTACTTTTAAAATTTGAAAGA
98470881 TTTACTTTTAAAATTTGAAAGA
1 TTTACTTTTAAAATTTGAAAGA
98470903 GGAGGTCTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.39, C:0.02, G:0.07, T:0.52
Consensus pattern (22 bp):
TTTACTTTTAAAATTTGAAAGA
Found at i:98472871 original size:46 final size:46
Alignment explanation
Indices: 98472807--98472972 Score: 194
Period size: 46 Copynumber: 3.6 Consensus size: 46
98472797 TATCGTAGCT
*
98472807 GATGCATGTCCCAAACATGTCTTACATTGGCT-TACATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACATTGGCTCT-CATCTCGAGGCC
* * *
98472853 GATGCATGTCCCAGACATGTCTTACACTAGG-TCTCATCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACA-TTGGCTCTCATCTCGAGGCC
* * *
98472899 GATGCCATGTCCCAGATATGGTCTTACATTGGCTCTCATAAT-GTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACATTGGCTCTCAT-CTCGAGGCC
*
98472947 GATGCATGTCCAAGACATGTCTTACA
1 GATGCATGTCCCAGACATGTCTTACA
98472973 CTAGCACACA
Statistics
Matches: 102, Mismatches: 12, Indels: 12
0.81 0.10 0.10
Matches are distributed among these distances:
46 48 0.47
47 32 0.31
48 21 0.21
49 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACATTGGCTCTCATCTCGAGGCC
Found at i:98472924 original size:94 final size:92
Alignment explanation
Indices: 98472807--98472976 Score: 245
Period size: 94 Copynumber: 1.8 Consensus size: 92
98472797 TATCGTAGCT
* *
98472807 GATGCATGTCCCAAACATGTCTTACATTGGCT-TACAT-CTCGAGGCCGATGCATGTCCCAGACA
1 GATGCATGTCCCAAACATGTCTTACATTGGCTCT-CATAAT-GAGGCCGATGCATGTCCAAGACA
98472870 TGTCTTACACTAGGTCTCATCTCAATGCC
64 TGTCTTACACTAGGTCTCATCTCAATGCC
* * *
98472899 GATGCCATGTCCCAGATATGGTCTTACATTGGCTCTCATAATGTGGCCGATGCATGTCCAAGACA
1 GATG-CATGTCCCAAACAT-GTCTTACATTGGCTCTCATAATGAGGCCGATGCATGTCCAAGACA
98472964 TGTCTTACACTAG
64 TGTCTTACACTAG
98472977 CACACAAATA
Statistics
Matches: 69, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
92 4 0.06
93 12 0.17
94 51 0.74
95 2 0.03
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (92 bp):
GATGCATGTCCCAAACATGTCTTACATTGGCTCTCATAATGAGGCCGATGCATGTCCAAGACATG
TCTTACACTAGGTCTCATCTCAATGCC
Found at i:98472969 original size:140 final size:141
Alignment explanation
Indices: 98472710--98472972 Score: 329
Period size: 140 Copynumber: 1.9 Consensus size: 141
98472700 GGTATAATGT
** *
98472710 CGATGCCATGTCCCAGACATGGTCTTACACTAACTCTCACATATCCGTGCCGATTCCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAACTCT-ACATATCAATGCCGATGCCATGTCCCA
*
98472775 AACATGGTCTTACACTGACACATATCGTAGCTGATGCATGTCCCAAACATGTCTTACATTGGCTT
65 AACATGGTCTTACACTGACACATATCGTAGCCGATGCATGTCCCAAACATGTCTTACATTGGCTT
98472840 ACATCTCGAGGC
130 ACATCTCGAGGC
** * *
98472852 CGATG-CATGTCCCAGACAT-GTCTTACACTAGGTCT-CATCTCAATGCCGATGCCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTAACTCTACATATCAATGCCGATGCCATGTCCCAA
* * * * *
98472914 ATATGGTCTTACATTGGCTCTCATAAT-GTGGCCGATGCATGT-CCAAGACATGTCTTACA
66 ACATGGTCTTACACT-G-ACACAT-ATCGTAGCCGATGCATGTCCCAA-ACATGTCTTACA
98472973 CTAGCACACA
Statistics
Matches: 104, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
138 35 0.34
139 5 0.05
140 43 0.41
141 16 0.15
142 5 0.05
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (141 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAACTCTACATATCAATGCCGATGCCATGTCCCAA
ACATGGTCTTACACTGACACATATCGTAGCCGATGCATGTCCCAAACATGTCTTACATTGGCTTA
CATCTCGAGGC
Found at i:98483303 original size:30 final size:31
Alignment explanation
Indices: 98483236--98483303 Score: 86
Period size: 31 Copynumber: 2.2 Consensus size: 31
98483226 ACTGTTAATC
* * *
98483236 AGTGACTATTTTGTCACTTTTTTATAACGTT
1 AGTGACTATTTTGTAACTTTTTCATAAAGTT
98483267 AGTGACTATTTTGTAAC-TTTTCA-AAAGTT
1 AGTGACTATTTTGTAACTTTTTCATAAAGTT
98483296 AAGTGACT
1 -AGTGACT
98483304 GAAATGAAAC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 5 0.15
30 12 0.36
31 16 0.48
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.46
Consensus pattern (31 bp):
AGTGACTATTTTGTAACTTTTTCATAAAGTT
Found at i:98486147 original size:24 final size:24
Alignment explanation
Indices: 98486096--98486144 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
98486086 GTTTTGAATG
** *
98486096 ATATTTTTGTTAAATAATAATCTA
1 ATATTTTACTTAAATAATAATATA
98486120 ATATTTTACTTAATATAATAATATA
1 ATATTTTACTTAA-ATAATAATATA
98486145 TATAAAGAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (24 bp):
ATATTTTACTTAAATAATAATATA
Found at i:98486939 original size:55 final size:54
Alignment explanation
Indices: 98486738--98486940 Score: 244
Period size: 55 Copynumber: 3.7 Consensus size: 54
98486728 TTTTTATGAA
* * * *
98486738 TTTTGAATCTATTGTTTATATGTTCAAATCGATTGTCATGTTGTAATACTGCTTC
1 TTTTGAAT-AATTGTTTATATGTTTAAATCGATTGTTATGTTGGAATACTGCTTC
* * * * *
98486793 TTTTGAATTGATTGTTTATATATTTAAATTGATTGCTATGTTCGAATACTGCTTC
1 TTTTGAA-TAATTGTTTATATGTTTAAATCGATTGTTATGTTGGAATACTGCTTC
* *
98486848 TTTTAAATAGATTGTTTATATGTTTAAATCGATTGTTTTGTTGGAATACTGCTTC
1 TTTTGAATA-ATTGTTTATATGTTTAAATCGATTGTTATGTTGGAATACTGCTTC
* * *
98486903 TTTTGATTCAATTGTTTATATGCTTAAATCAATTGTTA
1 TTTTGAAT-AATTGTTTATATGTTTAAATCGATTGTTA
98486941 CGTAGCACGT
Statistics
Matches: 125, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
54 1 0.01
55 122 0.98
56 2 0.02
ACGTcount: A:0.26, C:0.09, G:0.14, T:0.51
Consensus pattern (54 bp):
TTTTGAATAATTGTTTATATGTTTAAATCGATTGTTATGTTGGAATACTGCTTC
Found at i:98493231 original size:20 final size:20
Alignment explanation
Indices: 98493189--98493232 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
98493179 TAAAGAAAGT
*
98493189 AAATGCAATAGAAAGCAATA
1 AAATGCAATAGAAAGCAAGA
*
98493209 AAATGCAA-ATGAAAGTAAGA
1 AAATGCAATA-GAAAGCAAGA
98493229 AAAT
1 AAAT
98493233 TTGGAAAGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 1 0.05
20 20 0.95
ACGTcount: A:0.61, C:0.07, G:0.16, T:0.16
Consensus pattern (20 bp):
AAATGCAATAGAAAGCAAGA
Found at i:98497375 original size:102 final size:102
Alignment explanation
Indices: 98497199--98497401 Score: 370
Period size: 102 Copynumber: 2.0 Consensus size: 102
98497189 GCATTGAGTG
98497199 TGACTCAACTACTGAAACTTTAGCCAATAGTGACACCATGCTTGTGTAGGTATCCGATGATGAGG
1 TGACTCAACTACTGAAACTTTAGCCAATAGTGACACCATGCTTGTGTAGGTATCCGATGATGAGG
98497264 CAAGCCTTAATGTTGAGCATAGTTGCTGATGTTGAAC
66 CAAGCCTTAATGTTGAGCATAGTTGCTGATGTTGAAC
* *
98497301 TGACTCAACTACTGAAACTTTAGCTAATAGTGACACCATGCTTGTGTAGGTATTCGATGATGAGG
1 TGACTCAACTACTGAAACTTTAGCCAATAGTGACACCATGCTTGTGTAGGTATCCGATGATGAGG
* *
98497366 CAAGCCTTAATGTTGAGCCTAGTTGTTGATGTTGAA
66 CAAGCCTTAATGTTGAGCATAGTTGCTGATGTTGAA
98497402 GTGCTTAGAT
Statistics
Matches: 97, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
102 97 1.00
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (102 bp):
TGACTCAACTACTGAAACTTTAGCCAATAGTGACACCATGCTTGTGTAGGTATCCGATGATGAGG
CAAGCCTTAATGTTGAGCATAGTTGCTGATGTTGAAC
Found at i:98498166 original size:30 final size:30
Alignment explanation
Indices: 98498132--98498226 Score: 81
Period size: 30 Copynumber: 3.2 Consensus size: 30
98498122 TTTGTAAAGG
98498132 AAATTTTGATGAAATTGTGATTTAGGGACT
1 AAATTTTGATGAAATTGTGATTTAGGGACT
* * * *
98498162 AAA--TTGA--AAAGATGTAAAATTTATGGATGT
1 AAATTTTGATGAAA-TTGT--GATTTAGGGA-CT
*
98498192 AAATTTTGATGAAATTATGATTTAGGGACT
1 AAATTTTGATGAAATTGTGATTTAGGGACT
98498222 AAATT
1 AAATT
98498227 GGAATTGTCA
Statistics
Matches: 48, Mismatches: 9, Indels: 16
0.66 0.12 0.22
Matches are distributed among these distances:
26 3 0.06
27 3 0.06
28 4 0.08
29 8 0.17
30 13 0.27
31 8 0.17
32 4 0.08
33 2 0.04
34 3 0.06
ACGTcount: A:0.40, C:0.02, G:0.20, T:0.38
Consensus pattern (30 bp):
AAATTTTGATGAAATTGTGATTTAGGGACT
Found at i:98498374 original size:17 final size:17
Alignment explanation
Indices: 98498352--98498391 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
98498342 TAGATCCAAA
98498352 TAGATCAAATACGGAGC
1 TAGATCAAATACGGAGC
98498369 TAGATCAAATACGGAGC
1 TAGATCAAATACGGAGC
98498386 TAGATC
1 TAGATC
98498392 GAGGTAAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.40, C:0.17, G:0.23, T:0.20
Consensus pattern (17 bp):
TAGATCAAATACGGAGC
Found at i:98498932 original size:24 final size:25
Alignment explanation
Indices: 98498905--98498963 Score: 65
Period size: 24 Copynumber: 2.5 Consensus size: 25
98498895 CTGTTAATGT
98498905 CTCTTCA-GAG-TTACCCG-TTATTGG
1 CTCTTCATGAGCTT-CCCGATTA-TGG
98498929 CTC-TCATGAGCTTCCCGATTATGG
1 CTCTTCATGAGCTTCCCGATTATGG
98498953 CTCTT-ATGAGC
1 CTCTTCATGAGC
98498964 CTCCTGTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
23 3 0.10
24 22 0.71
25 6 0.19
ACGTcount: A:0.17, C:0.27, G:0.20, T:0.36
Consensus pattern (25 bp):
CTCTTCATGAGCTTCCCGATTATGG
Found at i:98499027 original size:25 final size:25
Alignment explanation
Indices: 98498918--98499030 Score: 86
Period size: 25 Copynumber: 4.6 Consensus size: 25
98498908 TTCAGAGTTA
*
98498918 CCCGTTAT-TGGCTCTCATGAGCTT
1 CCCGTTATATGGCTCACATGAGCTT
* ** *
98498942 CCCGAT-TATGGCTCTTATGAGCCT
1 CCCGTTATATGGCTCACATGAGCTT
* ** * * *
98498966 CCTGTTATACAGCCCAGATAAGCTT
1 CCCGTTATATGGCTCACATGAGCTT
* *
98498991 CCCATTACATGGCTCACATGAGCTT
1 CCCGTTATATGGCTCACATGAGCTT
*
98499016 CCTGTTATATGGCTC
1 CCCGTTATATGGCTC
98499031 GAGAGAGGGC
Statistics
Matches: 64, Mismatches: 23, Indels: 3
0.71 0.26 0.03
Matches are distributed among these distances:
23 1 0.02
24 23 0.36
25 40 0.62
ACGTcount: A:0.19, C:0.29, G:0.19, T:0.33
Consensus pattern (25 bp):
CCCGTTATATGGCTCACATGAGCTT
Found at i:98499064 original size:52 final size:50
Alignment explanation
Indices: 98498937--98499065 Score: 120
Period size: 50 Copynumber: 2.6 Consensus size: 50
98498927 GGCTCTCATG
* * *
98498937 AGCTTCCCGATTAT-GGCTCTTATGAGCCTCCTGTTATACAGCCCAGATA
1 AGCTTCCCGATTATATGCTCTAATGAGCCTCCTGTTATACAGCCCAGAGA
* * ** *
98498986 AGCTTCCC-ATTACATGGCTC-ACATGAGCTTCCTGTTATATGGCTCGAGAGA
1 AGCTTCCCGATTATAT-GCTCTA-ATGAGCCTCCTGTTATACAGC-CCAGAGA
*
98499037 GGGCTTCCCGATTATATGCTCTAATGAGC
1 -AGCTTCCCGATTATATGCTCTAATGAGC
98499066 ACTCTTGAAT
Statistics
Matches: 63, Mismatches: 10, Indels: 11
0.75 0.12 0.13
Matches are distributed among these distances:
48 4 0.06
49 8 0.13
50 22 0.35
51 5 0.08
52 17 0.27
53 7 0.11
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.30
Consensus pattern (50 bp):
AGCTTCCCGATTATATGCTCTAATGAGCCTCCTGTTATACAGCCCAGAGA
Found at i:98501414 original size:10 final size:9
Alignment explanation
Indices: 98501392--98501418 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
98501382 GGTGAGTTTT
98501392 AAAAAATTC
1 AAAAAATTC
98501401 AAAAAATTC
1 AAAAAATTC
98501410 AAAAAATTC
1 AAAAAATTC
98501419 GTGTATAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.67, C:0.11, G:0.00, T:0.22
Consensus pattern (9 bp):
AAAAAATTC
Found at i:98505238 original size:10 final size:9
Alignment explanation
Indices: 98505216--98505242 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
98505206 GGTGAGTTTT
98505216 AAAAAATTC
1 AAAAAATTC
98505225 AAAAAATTC
1 AAAAAATTC
98505234 AAAAAATTC
1 AAAAAATTC
98505243 GTGTATAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.67, C:0.11, G:0.00, T:0.22
Consensus pattern (9 bp):
AAAAAATTC
Found at i:98506575 original size:24 final size:24
Alignment explanation
Indices: 98506548--98506603 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
98506538 TTCAGAGTTA
*
98506548 CCCGTTATTGGATCTCATGAGCTT
1 CCCGTTATTGGATCTCATGAGCCT
* *
98506572 CCCGATTA-TGGCTCTTATGAGCCT
1 CCCG-TTATTGGATCTCATGAGCCT
*
98506596 CCTGTTAT
1 CCCGTTAT
98506604 ACAGCCCAGA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
23 3 0.12
24 20 0.77
25 3 0.12
ACGTcount: A:0.16, C:0.27, G:0.20, T:0.38
Consensus pattern (24 bp):
CCCGTTATTGGATCTCATGAGCCT
Found at i:98509029 original size:10 final size:9
Alignment explanation
Indices: 98509007--98509033 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
98508997 GGTGAGTTTT
98509007 AAAAAATTC
1 AAAAAATTC
98509016 AAAAAATTC
1 AAAAAATTC
98509025 AAAAAATTC
1 AAAAAATTC
98509034 GTGTATAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.67, C:0.11, G:0.00, T:0.22
Consensus pattern (9 bp):
AAAAAATTC
Found at i:98516770 original size:50 final size:51
Alignment explanation
Indices: 98516693--98516835 Score: 166
Period size: 51 Copynumber: 2.8 Consensus size: 51
98516683 ATCTGGTACG
* *
98516693 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTCACCA-TCTAATACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTCACAATTCGAATACA
* * ** *
98516743 CGTAGTAGCCTGCACTTAGTACTACACACGTGA--TCACAATTTTCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTCACAA--TTCGAATACA
* *
98516794 CATAGTAGCCTGCACTTAGTACTAGACATGCGACCTCACAAT
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTCACAAT
98516836 AGATCATTCG
Statistics
Matches: 77, Mismatches: 11, Indels: 9
0.79 0.11 0.09
Matches are distributed among these distances:
48 5 0.06
50 31 0.40
51 35 0.45
53 6 0.08
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (51 bp):
CATAGTAGCCTGCACTTAGTACTACACATGTGACCTCACAATTCGAATACA
Found at i:98523154 original size:22 final size:21
Alignment explanation
Indices: 98523128--98523174 Score: 67
Period size: 22 Copynumber: 2.2 Consensus size: 21
98523118 TACAAATTAA
98523128 ATCTTCAAGATTACAAGATCAT
1 ATCTTCAAGATTAC-AGATCAT
* *
98523150 ATCTTCAAGATTGCATATCAT
1 ATCTTCAAGATTACAGATCAT
98523171 ATCT
1 ATCT
98523175 AAGATTGCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (21 bp):
ATCTTCAAGATTACAGATCAT
Found at i:98523180 original size:19 final size:19
Alignment explanation
Indices: 98523145--98523241 Score: 144
Period size: 19 Copynumber: 5.1 Consensus size: 19
98523135 AGATTACAAG
98523145 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
98523166 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
*
98523185 ATCTTATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
*
98523202 ATCATATCTAATATTGCAT
1 ATCATATCTAAGATTGCAT
98523221 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
98523240 AT
1 AT
98523242 TCTTAAAGAT
Statistics
Matches: 70, Mismatches: 4, Indels: 6
0.88 0.05 0.08
Matches are distributed among these distances:
17 15 0.21
19 46 0.66
20 1 0.01
21 8 0.11
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.40
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:98523208 original size:36 final size:37
Alignment explanation
Indices: 98523145--98523241 Score: 133
Period size: 36 Copynumber: 2.5 Consensus size: 37
98523135 AGATTACAAG
98523145 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
* *
98523185 ATCTTATCTAAGATTG-TATCATATCTAATATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
98523221 ATCATATCTAAGATTGCATAT
1 ATCATATCTAAGATTG-ATAT
98523242 TCTTAAAGAT
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
36 34 0.65
38 10 0.19
39 1 0.02
40 7 0.13
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.40
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:98523824 original size:41 final size:41
Alignment explanation
Indices: 98523697--98524209 Score: 173
Period size: 43 Copynumber: 12.3 Consensus size: 41
98523687 ACCCGTTACC
98523697 CTACTGCTTAGGGGATTAAGGCGAGTCGTCGTCGATCTGCTCCA
1 CTACTGCTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCTCCA
* * *
98523741 CTACTGCTTAGGGAGA-TAA---GA-TCTGCGAACCTGTTACC-
1 CTACTGCTTAGGG-GATTAAGGCGAGTCTTCG-ATCTGCT-CCA
*
98523779 CTACTACTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
1 CTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
* * * * *
98523820 CTACTGCTTA-GGGATATAAGATCTGCAAAT-TT-AACCTGTTACC-
1 CTACTGCTTAGGGGAT-TAAG----GCGAGTCTTCGATCTGCT-CCA
**
98523863 CTACCACTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
1 CTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
* * * * * *
98523904 CTATTGCTTAGGGAGA-TAAGATTTGCAAAT-TT-AACCTGTTACC-
1 CTACTGCTTAGGG-GATTAAG----GCGAGTCTTCGATCTGCT-CCA
* * * * *
98523947 CTACTGCTTAGGGAGA-TAAGATCTGCAAAT-TT-AACCTGTTACC-
1 CTACTGCTTAGGG-GATTAAG----GCGAGTCTTCGATCTGCT-CCA
*
98523990 CTACTGCTTAGGGGATTAAGGCGAGTCGTCGTCGATCTGCTCCG
1 CTACTGCTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCTCCA
* * * * * *
98524034 CTATTACTTAGAGAGA-TAA---GA-TCTGCGAACCTGTTACC-
1 CTACTGCTTAG-GGGATTAAGGCGAGTCTTCG-ATCTGCT-CCA
* *
98524072 CTACTGGTTAGGGGATTAAGGCGAGTCTTTGATCTGCTCCA
1 CTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
* * * * *
98524113 CTACTGCTTAGGGAGA-TAAGATCTGCAAAT-TT-AACCTGTTACC-
1 CTACTGCTTAGGG-GATTAAG----GCGAGTCTTCGATCTGCT-CCA
*
98524156 CTACTGCTTAGGGGATTAAGGCGAGTCTTCAATCTGCTCCA
1 CTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
98524197 CTACTGCTTAGGG
1 CTACTGCTTAGGG
98524210 AGATAAGATC
Statistics
Matches: 359, Mismatches: 59, Indels: 105
0.69 0.11 0.20
Matches are distributed among these distances:
37 9 0.03
38 36 0.10
39 18 0.05
40 21 0.06
41 86 0.24
42 17 0.05
43 105 0.29
44 50 0.14
45 17 0.05
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (41 bp):
CTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
Found at i:98523890 original size:84 final size:84
Alignment explanation
Indices: 98523673--98523959 Score: 440
Period size: 84 Copynumber: 3.4 Consensus size: 84
98523663 AATCATCTTT
* *
98523673 GATCTGCAAATTTAACCCGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTCGTCGATCTGCT
1 GATCTGCAAATTTAACCTGTTACCCTACTACTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCT
98523738 CCACTACTGCTTAGGGAGATAA
63 CCACTACTGCTTAGGGAGATAA
*
98523760 GATCTGC-----GAACCTGTTACCCTACTACTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
1 GATCTGCAAATTTAACCTGTTACCCTACTACTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
*
98523820 CTACTGCTTAGGGATATAA
66 CTACTGCTTAGGGAGATAA
*
98523839 GATCTGCAAATTTAACCTGTTACCCTACCACTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
1 GATCTGCAAATTTAACCTGTTACCCTACTACTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
*
98523904 CTATTGCTTAGGGAGATAA
66 CTACTGCTTAGGGAGATAA
* *
98523923 GATTTGCAAATTTAACCTGTTACCCTACTGCTTAGGG
1 GATCTGCAAATTTAACCTGTTACCCTACTACTTAGGG
98523960 AGATAAGATC
Statistics
Matches: 184, Mismatches: 11, Indels: 13
0.88 0.05 0.06
Matches are distributed among these distances:
79 38 0.21
81 1 0.01
82 36 0.20
84 102 0.55
87 7 0.04
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (84 bp):
GATCTGCAAATTTAACCTGTTACCCTACTACTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCA
CTACTGCTTAGGGAGATAA
Found at i:98524100 original size:209 final size:202
Alignment explanation
Indices: 98523741--98524168 Score: 615
Period size: 209 Copynumber: 2.1 Consensus size: 202
98523731 ATCTGCTCCA
98523741 CTACTGCTTAGGGAGATAAGATCTGCGAACCTGTTACCCTACTACTTAGGGGATTAAGGCGAGTC
1 CTACTGCTTAGGGAGATAAGATCTGCGAACCTGTTACCCTACTACTTAGGGGATTAAGGCGAGTC
* * * *
98523806 TTCGATCTGCTCCACTACTGCTTAGGGATATAAGATCTGCAAATTTAACCTGTTACCCTACCACT
66 TTCGATCTGCTCCACTACTACTTAGAGAGATAAGATCTGC--A--GAACCTGTTACCCTACCACT
* *
98523871 TAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATTTGCAAATTT
127 TAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTT
98523936 AACCTGTTACC
192 AACCTGTTACC
* *
98523947 CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGC
1 CTACTGCTTAGGGAGATAAGATCTGC-----GAACCTGTTACCCTACTACTTAGGGGATTAAGGC
* *
98524012 GAGTCGTCGTCGATCTGCTCCGCTATTACTTAGAGAGATAAGATCTGC-GAACCTGTTACCCTAC
61 GAGTC-T--TCGATCTGCTCCACTACTACTTAGAGAGATAAGATCTGCAGAACCTGTTACCCTAC
*** *
98524076 TGGTTAGGGGATTAAGGCGAGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAA
123 CACTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAA
98524141 ATTTAACCTGTTACC
188 ATTTAACCTGTTACC
98524156 CTACTGCTTAGGG
1 CTACTGCTTAGGG
98524169 GATTAAGGCG
Statistics
Matches: 200, Mismatches: 14, Indels: 13
0.88 0.06 0.06
Matches are distributed among these distances:
206 26 0.13
209 102 0.51
211 37 0.19
212 1 0.00
214 34 0.17
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (202 bp):
CTACTGCTTAGGGAGATAAGATCTGCGAACCTGTTACCCTACTACTTAGGGGATTAAGGCGAGTC
TTCGATCTGCTCCACTACTACTTAGAGAGATAAGATCTGCAGAACCTGTTACCCTACCACTTAGG
GGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACC
TGTTACC
Found at i:98524144 original size:166 final size:164
Alignment explanation
Indices: 98523947--98524262 Score: 499
Period size: 166 Copynumber: 1.9 Consensus size: 164
98523937 ACCTGTTACC
98523947 CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGC
1 CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGC
* * *
98524012 GAGTCGTCGTCGATCTGCTCCGCTATTACTTAGAGAGATAAGATCTGC-GAACCTGTTACCCTAC
66 GAGTC-T--TCAATCTGCTCCACTACTACTTAGAGAGATAAGATCTGCAGAACCTGTTACCCTAC
*
98524076 TGGTTAGGGGATTAAGGCGAGTCTTTGATCTGCTCCA
128 TGCTTAGGGGATTAAGGCGAGTCTTTGATCTGCTCCA
98524113 CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGC
1 CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGC
* * *
98524178 GAGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTA
66 GAGTCTTCAATCTGCTCCACTACTACTTAGAGAGATAAGATCTGC--A--GAACCTGTTACCCTA
98524243 CTGCTTAGGGGATTAAGGCG
127 CTGCTTAGGGGATTAAGGCG
98524263 CTGAATTTTG
Statistics
Matches: 138, Mismatches: 7, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
163 34 0.25
165 1 0.01
166 70 0.51
168 33 0.24
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (164 bp):
CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGC
GAGTCTTCAATCTGCTCCACTACTACTTAGAGAGATAAGATCTGCAGAACCTGTTACCCTACTGC
TTAGGGGATTAAGGCGAGTCTTTGATCTGCTCCA
Found at i:98524174 original size:84 final size:84
Alignment explanation
Indices: 98523947--98524262 Score: 498
Period size: 84 Copynumber: 3.8 Consensus size: 84
98523937 ACCTGTTACC
98523947 CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGC
1 CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGC
*
98524012 GAGTCGTCGTCGATCTGCTCCG
66 GAGTC-T--TCGATCTGCTCCA
* * * * *
98524034 CTATTACTTAGAGAGATAAGATCTGC-----GAACCTGTTACCCTACTGGTTAGGGGATTAAGGC
1 CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGC
*
98524094 GAGTCTTTGATCTGCTCCA
66 GAGTCTTCGATCTGCTCCA
98524113 CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGC
1 CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGC
*
98524178 GAGTCTTCAATCTGCTCCA
66 GAGTCTTCGATCTGCTCCA
98524197 CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGC
1 CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGC
98524262 G
66 G
98524263 CTGAATTTTG
Statistics
Matches: 210, Mismatches: 14, Indels: 13
0.89 0.06 0.05
Matches are distributed among these distances:
79 34 0.16
81 1 0.00
82 37 0.18
84 115 0.55
87 23 0.11
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (84 bp):
CTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGC
GAGTCTTCGATCTGCTCCA
Found at i:98524207 original size:293 final size:293
Alignment explanation
Indices: 98523673--98524252 Score: 1034
Period size: 293 Copynumber: 2.0 Consensus size: 293
98523663 AATCATCTTT
98523673 GATCTGCAAATTTAACCCGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTCGTCGATCTGCT
1 GATCTGCAAATTTAACCCGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTCGTCGATCTGCT
* *
98523738 CCACTACTGCTTAGGGAGATAAGATCTGCGAACCTGTTACCCTACTACTTAGGGGATTAAGGCGA
66 CCACTACTACTTAGAGAGATAAGATCTGCGAACCTGTTACCCTACTACTTAGGGGATTAAGGCGA
*
98523803 GTCTTCGATCTGCTCCACTACTGCTTAGGGATATAAGATCTGCAAATTTAACCTGTTACCCTACC
131 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACC
* * *
98523868 ACTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATTTGCAAA
196 ACTTAGGGGATTAAGGCGAGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAA
98523933 TTTAACCTGTTACCCTACTGCTTAGGGAGATAA
261 TTTAACCTGTTACCCTACTGCTTAGGGAGATAA
*
98523966 GATCTGCAAATTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTCGTCGATCTGCT
1 GATCTGCAAATTTAACCCGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTCGTCGATCTGCT
* * **
98524031 CCGCTATTACTTAGAGAGATAAGATCTGCGAACCTGTTACCCTACTGGTTAGGGGATTAAGGCGA
66 CCACTACTACTTAGAGAGATAAGATCTGCGAACCTGTTACCCTACTACTTAGGGGATTAAGGCGA
* *
98524096 GTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACT
131 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACC
*
98524161 GCTTAGGGGATTAAGGCGAGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAA
196 ACTTAGGGGATTAAGGCGAGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAA
98524226 TTTAACCTGTTACCCTACTGCTTAGGG
261 TTTAACCTGTTACCCTACTGCTTAGGG
98524253 GATTAAGGCG
Statistics
Matches: 273, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
293 273 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (293 bp):
GATCTGCAAATTTAACCCGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTCGTCGATCTGCT
CCACTACTACTTAGAGAGATAAGATCTGCGAACCTGTTACCCTACTACTTAGGGGATTAAGGCGA
GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACC
ACTTAGGGGATTAAGGCGAGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAA
TTTAACCTGTTACCCTACTGCTTAGGGAGATAA
Found at i:98525225 original size:7 final size:7
Alignment explanation
Indices: 98525209--98525267 Score: 70
Period size: 7 Copynumber: 8.4 Consensus size: 7
98525199 GGCCTCTCCA
98525209 TTTTTC-
1 TTTTTCT
98525215 TTTTTCT
1 TTTTTCT
98525222 TTTTTCT
1 TTTTTCT
98525229 CTTTTT-T
1 -TTTTTCT
98525236 CTTTTTCT
1 -TTTTTCT
98525244 TTTTTCCT
1 TTTTT-CT
98525252 TTTTTCT
1 TTTTTCT
98525259 TTTTT-T
1 TTTTTCT
98525265 TTT
1 TTT
98525268 GAAATAGAAG
Statistics
Matches: 49, Mismatches: 0, Indels: 8
0.86 0.00 0.14
Matches are distributed among these distances:
6 10 0.20
7 26 0.53
8 13 0.27
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTTCT
Found at i:98525233 original size:15 final size:13
Alignment explanation
Indices: 98525209--98525267 Score: 73
Period size: 15 Copynumber: 4.2 Consensus size: 13
98525199 GGCCTCTCCA
98525209 TTTTTCTTTTTCTT
1 TTTTTCTTTTT-TT
*
98525223 TTTTCTCTTTTTTC
1 TTTT-TCTTTTTTT
98525237 TTTTTCTTTTTTCCT
1 TTTTTCTTTTTT--T
98525252 TTTTTCTTTTTTT
1 TTTTTCTTTTTTT
98525265 TTT
1 TTT
98525268 GAAATAGAAG
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
13 12 0.30
14 9 0.22
15 19 0.47
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTTCTTTTTTT
Found at i:98525235 original size:22 final size:21
Alignment explanation
Indices: 98525209--98525267 Score: 102
Period size: 22 Copynumber: 2.8 Consensus size: 21
98525199 GGCCTCTCCA
98525209 TTTTTCTTTTTCTTTTTTCTCT
1 TTTTTCTTTTTCTTTTTTC-CT
98525231 TTTTTCTTTTTCTTTTTTCCT
1 TTTTTCTTTTTCTTTTTTCCT
98525252 TTTTTCTTTTT-TTTTT
1 TTTTTCTTTTTCTTTTT
98525268 GAAATAGAAG
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.14
21 13 0.35
22 19 0.51
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (21 bp):
TTTTTCTTTTTCTTTTTTCCT
Found at i:98530795 original size:36 final size:38
Alignment explanation
Indices: 98530740--98530812 Score: 114
Period size: 36 Copynumber: 2.0 Consensus size: 38
98530730 AGATTACAAG
**
98530740 ATCATATCTTCAATATTGCATATTGTATCTAAGATTGT
1 ATCATATCTTCAATATTGCATATCATATCTAAGATTGT
98530778 ATCATATC-T-AATATTGCATATCATATCTAAGATTG
1 ATCATATCTTCAATATTGCATATCATATCTAAGATTG
98530813 CATATCCTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
36 24 0.73
37 1 0.03
38 8 0.24
ACGTcount: A:0.34, C:0.14, G:0.10, T:0.42
Consensus pattern (38 bp):
ATCATATCTTCAATATTGCATATCATATCTAAGATTGT
Found at i:98530801 original size:19 final size:19
Alignment explanation
Indices: 98530740--98530818 Score: 90
Period size: 19 Copynumber: 4.2 Consensus size: 19
98530730 AGATTACAAG
*
98530740 ATCATATCTTCAATATTGCAT
1 ATCATATC-T-AAGATTGCAT
**
98530761 ATTGTATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
*
98530778 ATCATATCTAATATTGCAT
1 ATCATATCTAAGATTGCAT
98530797 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
98530816 ATC
1 ATC
98530819 CTTAAAGATT
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
17 14 0.29
19 28 0.57
20 1 0.02
21 6 0.12
ACGTcount: A:0.34, C:0.15, G:0.09, T:0.42
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:98535910 original size:42 final size:43
Alignment explanation
Indices: 98535807--98535922 Score: 114
Period size: 42 Copynumber: 2.7 Consensus size: 43
98535797 AATTATCATG
* *
98535807 TAAGACCGTGTCTGGGACACAAGCATCGATTTGAGATTTACGTG
1 TAAGACCATGTCTGGGACACAAGCATCGATTT-AGATTTACGTA
*
98535851 TAAGACCATGT-TCGGGACATC-AGCATCGTATTT-GATTT-TGTA
1 TAAGACCATGTCT-GGGACA-CAAGCATCG-ATTTAGATTTACGTA
* * *
98535893 TAAGACCCTGTCTGGGACAGAGGCATCGAT
1 TAAGACCATGTCTGGGACACAAGCATCGAT
98535923 ACTGAATTAC
Statistics
Matches: 61, Mismatches: 6, Indels: 13
0.76 0.08 0.16
Matches are distributed among these distances:
41 2 0.03
42 24 0.39
43 7 0.11
44 23 0.38
45 5 0.08
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACACAAGCATCGATTTAGATTTACGTA
Found at i:98540117 original size:47 final size:47
Alignment explanation
Indices: 98540048--98540567 Score: 781
Period size: 47 Copynumber: 11.1 Consensus size: 47
98540038 GAAATGATAG
98540048 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
98540095 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
98540142 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
98540189 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
98540236 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
98540283 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
98540330 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
98540377 TAAGGCCTAATAGCCGATGTGATGAATGAGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
98540424 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * *
98540470 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
98540517 TAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
98540564 TAAG
1 TAAG
98540568 TCCCGAAGGG
Statistics
Matches: 447, Mismatches: 25, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
46 39 0.09
47 408 0.91
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:98547397 original size:85 final size:86
Alignment explanation
Indices: 98547237--98547397 Score: 191
Period size: 86 Copynumber: 1.9 Consensus size: 86
98547227 TATTGAACTG
* ** * * * * **
98547237 AATTATCGTGTAAGACTGTGTCTGGGACACAGGCATCAATTTGAGAATTACGTGTAAGACTATGT
1 AATTATCGTATAAGACCCTGTCTGGGACAAAGGCATCAATCT-AGAATTACATGTAAGACCACAT
98547302 CCGGGACATCGACATCATATCT
65 CCGGGACATCGACATCATATCT
*
98547324 AATT-TCGTATAAGACCCTGTCTGGGACAAAGGCATCGATACT-GAATTACATGTAAGACCACAT
1 AATTATCGTATAAGACCCTGTCTGGGACAAAGGCATCAAT-CTAGAATTACATGTAAGACCACAT
*
98547387 CTGGGACATCG
65 CCGGGACATCG
98547398 GCATTGTACC
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
85 27 0.44
86 30 0.48
87 5 0.08
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (86 bp):
AATTATCGTATAAGACCCTGTCTGGGACAAAGGCATCAATCTAGAATTACATGTAAGACCACATC
CGGGACATCGACATCATATCT
Found at i:98553522 original size:34 final size:34
Alignment explanation
Indices: 98553483--98553551 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
98553473 AATGAAAAAA
*
98553483 TAACAAATTCACAAATAATGACTTTTTAAAACAG
1 TAACAAATTCAAAAATAATGACTTTTTAAAACAG
98553517 TAACAAATTCAAAAATAATGACTTTTTAAAACAG
1 TAACAAATTCAAAAATAATGACTTTTTAAAACAG
98553551 T
1 T
98553552 CCCCGGTAAC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.51, C:0.13, G:0.06, T:0.30
Consensus pattern (34 bp):
TAACAAATTCAAAAATAATGACTTTTTAAAACAG
Found at i:98555508 original size:16 final size:17
Alignment explanation
Indices: 98555477--98555509 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
98555467 TTCATAAGTA
98555477 TATATAAATCATTTCAT
1 TATATAAATCATTTCAT
*
98555494 TATATCAAT-ATTTCAT
1 TATATAAATCATTTCAT
98555510 GCACCATCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.39, C:0.12, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATAAATCATTTCAT
Found at i:98555856 original size:46 final size:46
Alignment explanation
Indices: 98555804--98555922 Score: 175
Period size: 46 Copynumber: 2.6 Consensus size: 46
98555794 TGTCATAGTG
* * * * *
98555804 TCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTATTCATTTCCCGTCACGTTGCCATGGTA
*
98555850 TCTTTCAACCGTGGTCTTATTCATTTCCCGTCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTATTCATTTCCCGTCACGTTGCCATGGTA
*
98555896 TCTTTCAACCATGGTTTTATTCATTTC
1 TCTTTCAACCATGGTCTTATTCATTTC
98555923 ATATCAGTGG
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 65 1.00
ACGTcount: A:0.17, C:0.24, G:0.14, T:0.45
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTATTCATTTCCCGTCACGTTGCCATGGTA
Found at i:98558759 original size:14 final size:15
Alignment explanation
Indices: 98558740--98558769 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
98558730 TTTCTTGGGC
98558740 GGTTCGGTTC-ACTT
1 GGTTCGGTTCAACTT
98558754 GGTTCGGTTCAACTT
1 GGTTCGGTTCAACTT
98558769 G
1 G
98558770 ACCACTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.10, C:0.20, G:0.30, T:0.40
Consensus pattern (15 bp):
GGTTCGGTTCAACTT
Found at i:98564618 original size:92 final size:91
Alignment explanation
Indices: 98564426--98564688 Score: 264
Period size: 94 Copynumber: 2.8 Consensus size: 91
98564416 TTATTTGTGT
* *
98564426 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGA-GAGCCAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATC-GGCACA--A-GATGTGCCAGTGTAAGACCATGT
* *
98564490 CTAGGATATGGCATCGACATTGAGACGAGA
62 CTGGGACATGGCATCGACATTGAGACGAGA
* *
98564520 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCTACAAGATGTGTCAGTGTAAGACCATGTCTG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGC-ACAAGATGTGCCAGTGTAAGACCATGTCTG
*
98564585 GGACATGGCATCAGCACATAT-AGA-G-GT
65 GGACATGGCATC-G-ACAT-TGAGACGAGA
* * *
98564612 GTTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGAATATGTGAGAGCTAGTGTAAGACCA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCAC-AAGATGT----GCCAGTGTAAGACCA
*
98564677 TGTCGGGGACAT
59 TGTCTGGGACAT
98564689 AGCGCCAGCC
Statistics
Matches: 144, Mismatches: 13, Indels: 20
0.81 0.07 0.11
Matches are distributed among these distances:
91 2 0.01
92 44 0.31
93 19 0.13
94 54 0.38
95 1 0.01
98 24 0.17
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.24
Consensus pattern (91 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCACAAGATGTGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGACATTGAGACGAGA
Found at i:98564626 original size:48 final size:48
Alignment explanation
Indices: 98564426--98564688 Score: 230
Period size: 48 Copynumber: 5.6 Consensus size: 48
98564416 TTATTTGTGT
98564426 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCACAT-TATGA-GA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAG-CACATATA-GAGGA
* * *
98564472 GCCAGTGTAAGACCATGTCTAGGATATGGCATC-G-ACAT-TGAGACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCACATAT-AGA-G-GA
* * * *
98564520 GCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCTAC--A-AGATGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGC-ACATATAGAGGA
*
98564564 G-TCAGTGTAAGACCATGTCTGGGACATGGCATCAGCACATATAGAGGT
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCAGCACATATAGAGGA
* * *
98564612 GTTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGA-ATATGTGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCAC-ATATA-GAG-GA
*
98564662 GCTAGTGTAAGACCATGTCGGGGACAT
1 GCTAGTGTAAGACCATGTCTGGGACAT
98564689 AGCGCCAGCC
Statistics
Matches: 180, Mismatches: 17, Indels: 36
0.77 0.07 0.15
Matches are distributed among these distances:
43 1 0.01
44 11 0.06
45 22 0.12
46 27 0.15
47 26 0.14
48 61 0.34
49 6 0.03
50 26 0.14
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCACATATAGAGGA
Found at i:98570761 original size:50 final size:50
Alignment explanation
Indices: 98570651--98570835 Score: 180
Period size: 50 Copynumber: 3.7 Consensus size: 50
98570641 TCTCATATCG
* * ** *
98570651 ATGCCATGTCCCA-AACATGGTCTTACACGAAAT--CATATATTGATGCCA
1 ATGCCAAGTCCCAGAA-ATGGTCTTACATGGGATCACATATATCGATGCCA
* *
98570699 ATGCCATA-TCCCAGATATGGTCTTACATGGGATCACATGTATCGATGCCA
1 ATGCCA-AGTCCCAGAAATGGTCTTACATGGGATCACATATATCGATGCCA
* * ** * *
98570749 ATTCCAAGTCCCAAAAATAATCTTACATGGGATTACATATATTGATGCCA
1 ATGCCAAGTCCCAGAAATGGTCTTACATGGGATCACATATATCGATGCCA
* * *
98570799 ATGCCATGTCCCTGACATGGTCTTACATGGGATCACA
1 ATGCCAAGTCCCAGAAATGGTCTTACATGGGATCACA
98570836 CATAACCCTA
Statistics
Matches: 109, Mismatches: 23, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
48 25 0.23
49 2 0.02
50 82 0.75
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (50 bp):
ATGCCAAGTCCCAGAAATGGTCTTACATGGGATCACATATATCGATGCCA
Found at i:98574724 original size:10 final size:9
Alignment explanation
Indices: 98574685--98574721 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
98574675 TTTTCGGTTC
*
98574685 TCTACCTTT
1 TCTATCTTT
98574694 TCTATCTTT
1 TCTATCTTT
98574703 TCTATCTTT
1 TCTATCTTT
98574712 TCTATCTTT
1 TCTATCTTT
98574721 T
1 T
98574722 TCTCCTTAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.11, C:0.24, G:0.00, T:0.65
Consensus pattern (9 bp):
TCTATCTTT
Found at i:98587526 original size:26 final size:26
Alignment explanation
Indices: 98587497--98587604 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
98587487 TGGTACAAAT
98587497 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
98587523 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
98587549 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
98587575 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
98587601 TGAT
1 TGAT
98587605 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:98595574 original size:26 final size:26
Alignment explanation
Indices: 98595545--98595652 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
98595535 TGGTACAAAT
98595545 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
98595571 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
*
98595597 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
98595623 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
98595649 TGAT
1 TGAT
98595653 GGGCATTTCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:98608357 original size:48 final size:48
Alignment explanation
Indices: 98608265--98608627 Score: 500
Period size: 48 Copynumber: 7.6 Consensus size: 48
98608255 AAATGTGGTT
*
98608265 GTGTAAGACCATGTCTGGGAC-TGGCATCGGCGATGATATATGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCCA
* *
98608312 GTGCAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCCA
* * *
98608360 GTGTAAGACCATGTCTGGGACAGGGCATCGGTGATGATATATGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCCA
* * * *
98608408 GTGTAAGACCATGTCTAGGACATGGCATCGACGATGATATGTGCGCCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCCA
* * *
98608456 GTGTAAGACCATGTTTGGGACATGGCATCGGTGATGATATATGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCCA
**
98608504 GTGTAAGACCATGTCTAAGACATGGCATCGGCGATGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCCA
* * *
98608552 GTGTAAGACTATGTCTGGGACATGGCATCGGGGATGATATGTG-GATTCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTG--CCA
*
98608601 -TGTAAGAACATGTC-GAGGACATGGCAT
1 GTGTAAGACCATGTCTG-GGACATGGCAT
98608628 TGGTACTGTA
Statistics
Matches: 278, Mismatches: 34, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
47 22 0.08
48 254 0.91
49 2 0.01
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCCA
Found at i:98610381 original size:28 final size:27
Alignment explanation
Indices: 98610324--98610474 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
98610314 TAAATTGTGC
* *
98610324 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
98610351 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
98610379 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
98610406 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
98610434 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
98610461 AGCACT-AGTGTGCG
1 AGCACTAAGTGTGCG
98610475 GACTTAATAT
Statistics
Matches: 118, Mismatches: 4, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
26 8 0.07
27 58 0.49
28 52 0.44
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:98610389 original size:55 final size:55
Alignment explanation
Indices: 98610324--98610474 Score: 241
Period size: 55 Copynumber: 2.8 Consensus size: 55
98610314 TAAATTGTGC
* *
98610324 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* *
98610379 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* *
98610434 AGCACTAAGTGTGCGAGTTGATTATATAGCACT-AGTGTGCG
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
98610475 GACTTAATAT
Statistics
Matches: 90, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
54 8 0.09
55 82 0.91
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
Found at i:98618519 original size:28 final size:27
Alignment explanation
Indices: 98618462--98618613 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
98618452 TAAATTGTGC
* *
98618462 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
98618489 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
98618517 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
98618544 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
98618572 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
98618599 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
98618614 GACTTAATAT
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:98618527 original size:55 final size:55
Alignment explanation
Indices: 98618462--98618613 Score: 241
Period size: 55 Copynumber: 2.8 Consensus size: 55
98618452 TAAATTGTGC
* *
98618462 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* *
98618517 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * *
98618572 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
98618614 GACTTAATAT
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 90 1.00
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
Found at i:98623442 original size:24 final size:25
Alignment explanation
Indices: 98623415--98623463 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
98623405 CTGTATAACG
98623415 GGAAGCTCAT-AATAGCCATA-ATCA
1 GGAAGCT-ATGAATAGCCATATATCA
*
98623439 GGAAGCTATGGATAGCCATATATCA
1 GGAAGCTATGAATAGCCATATATCA
98623464 AAAATTTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 2 0.09
24 16 0.73
25 4 0.18
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.22
Consensus pattern (25 bp):
GGAAGCTATGAATAGCCATATATCA
Found at i:98624019 original size:21 final size:21
Alignment explanation
Indices: 98623991--98624045 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
98623981 GATTTATACA
*
98623991 AATA-AATTTAACA-TCAATTT
1 AATACAATTT-ACATTCAATTC
98624011 AATACAATTTACATTCAATTC
1 AATACAATTTACATTCAATTC
* *
98624032 AATCCAATTCACAT
1 AATACAATTTACAT
98624046 ATTAGGCAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.23
21 23 0.77
ACGTcount: A:0.45, C:0.18, G:0.00, T:0.36
Consensus pattern (21 bp):
AATACAATTTACATTCAATTC
Found at i:98632480 original size:8 final size:8
Alignment explanation
Indices: 98632469--98632511 Score: 68
Period size: 8 Copynumber: 5.4 Consensus size: 8
98632459 TGTTTTATTG
98632469 TATTATAT
1 TATTATAT
98632477 TATTATAT
1 TATTATAT
98632485 TATTATAT
1 TATTATAT
* *
98632493 TAATAAAT
1 TATTATAT
98632501 TATTATAT
1 TATTATAT
98632509 TAT
1 TAT
98632512 ACTTAAGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (8 bp):
TATTATAT
Found at i:98637523 original size:39 final size:40
Alignment explanation
Indices: 98637478--98637648 Score: 222
Period size: 39 Copynumber: 4.3 Consensus size: 40
98637468 GCTCCTCGTT
* * *
98637478 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
98637518 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
98637557 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
98637597 CAAAGGCCTTCGGG-CTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
98637636 CAAATGCCTTCGG
1 CAAATGCCTTCGG
98637649 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
39 67 0.56
40 52 0.44
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:98637578 original size:40 final size:39
Alignment explanation
Indices: 98637480--98637701 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
98637470 TCCTCGTTCA
* * * *
98637480 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
98637519 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
98637558 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
98637598 AAAGGCCTTCGGG-CTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
98637637 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
98637678 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
98637702 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.01
39 68 0.43
40 79 0.50
41 8 0.05
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:98637661 original size:79 final size:79
Alignment explanation
Indices: 98637478--98637701 Score: 240
Period size: 79 Copynumber: 2.8 Consensus size: 79
98637468 GCTCCTCGTT
* * * * *
98637478 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
98637542 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* *
98637557 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGG-CTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
98637621 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
98637636 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
98637700 GA
63 GA
98637702 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 13
0.81 0.11 0.09
Matches are distributed among these distances:
78 4 0.03
79 86 0.70
80 32 0.26
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:98637710 original size:41 final size:41
Alignment explanation
Indices: 98637633--98637710 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
98637623 TTTGTATCTC
* * *
98637633 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
98637674 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
98637711 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:98645437 original size:39 final size:39
Alignment explanation
Indices: 98645392--98645561 Score: 211
Period size: 39 Copynumber: 4.3 Consensus size: 39
98645382 GCTCCTCGTT
* * *
98645392 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGAC-TAACCCGGATTTAGTAACTCGCA
*
98645432 C-AATGCCTTCGGGACTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTAACCCGGATTTAGTAACTCGCA
* *
98645470 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGAC-TAACCCGGATTTAGTAACTCGCA
* *
98645510 CAAAGGCCTTCGGG-CTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGAC-TAACCCGG-ATTTAGTAACTCGCA
98645549 CAAATGCCTTCGG
1 CAAATGCCTTCGG
98645562 ATCTTAGTCC
Statistics
Matches: 118, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
38 20 0.17
39 60 0.51
40 38 0.32
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTAACCCGGATTTAGTAACTCGCA
Found at i:98645508 original size:40 final size:40
Alignment explanation
Indices: 98645392--98645614 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 40
98645382 GCTCCTCGTT
* * * *
98645392 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
98645432 C-AATGCCTTCGGGAC-TAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
98645470 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
98645510 CAAAGGCCTTCGGG-CTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
98645549 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
98645590 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
98645615 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 17, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
38 22 0.14
39 61 0.39
40 64 0.41
41 11 0.07
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:98645574 original size:79 final size:79
Alignment explanation
Indices: 98645392--98645614 Score: 240
Period size: 79 Copynumber: 2.8 Consensus size: 79
98645382 GCTCCTCGTT
* * * *
98645392 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGAC-TAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
98645455 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* *
98645470 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGG-CTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
98645534 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
98645549 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
98645613 GA
63 GA
98645615 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
77 1 0.01
78 40 0.33
79 58 0.48
80 23 0.19
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:98645623 original size:41 final size:41
Alignment explanation
Indices: 98645546--98645623 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
98645536 TTTGTATCTC
* * *
98645546 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
98645587 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
98645624 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:98649711 original size:15 final size:15
Alignment explanation
Indices: 98649691--98649721 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
98649681 CATTACTTAG
98649691 ATGATATATTTCATA
1 ATGATATATTTCATA
98649706 ATGATATATTTCATA
1 ATGATATATTTCATA
98649721 A
1 A
98649722 CAAAAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.45
Consensus pattern (15 bp):
ATGATATATTTCATA
Found at i:98666704 original size:23 final size:23
Alignment explanation
Indices: 98666677--98666743 Score: 60
Period size: 23 Copynumber: 3.2 Consensus size: 23
98666667 CCTCTAACAA
98666677 CATTTGTAGATAATATAATGTCC
1 CATTTGTAGATAATATAATGTCC
*
98666700 CATTT-T--ATAATA-ACA----A
1 CATTTGTAGATAATATA-ATGTCC
98666716 CATTTGTAGATAATATAATGTCC
1 CATTTGTAGATAATATAATGTCC
98666739 CATTT
1 CATTT
98666744 TATAAAACTG
Statistics
Matches: 33, Mismatches: 2, Indels: 18
0.62 0.04 0.34
Matches are distributed among these distances:
16 5 0.15
17 1 0.03
19 8 0.24
20 8 0.24
22 1 0.03
23 10 0.30
ACGTcount: A:0.37, C:0.13, G:0.09, T:0.40
Consensus pattern (23 bp):
CATTTGTAGATAATATAATGTCC
Found at i:98666725 original size:39 final size:39
Alignment explanation
Indices: 98666671--98666748 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
98666661 ACATATCCTC
98666671 TAACAACATTTGTAGATAATATAATGTCCCATTTTATAA
1 TAACAACATTTGTAGATAATATAATGTCCCATTTTATAA
98666710 TAACAACATTTGTAGATAATATAATGTCCCATTTTATAA
1 TAACAACATTTGTAGATAATATAATGTCCCATTTTATAA
98666749 AACTGATTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.41, C:0.13, G:0.08, T:0.38
Consensus pattern (39 bp):
TAACAACATTTGTAGATAATATAATGTCCCATTTTATAA
Found at i:98667526 original size:18 final size:18
Alignment explanation
Indices: 98667490--98667533 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
98667480 ATGCTGTCCT
* *
98667490 CCAAGCTAT-TTTTTCCA
1 CCAAGCGATATTTATCCA
98667507 CCAAGCGATATTTATCCA
1 CCAAGCGATATTTATCCA
98667525 CCAAG-GATA
1 CCAAGCGATA
98667534 AAAATATGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 12 0.50
18 12 0.50
ACGTcount: A:0.32, C:0.27, G:0.11, T:0.30
Consensus pattern (18 bp):
CCAAGCGATATTTATCCA
Found at i:98679369 original size:33 final size:33
Alignment explanation
Indices: 98679327--98679450 Score: 221
Period size: 33 Copynumber: 3.8 Consensus size: 33
98679317 CTCTATTTTA
98679327 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
*
98679360 GGTTGCTGGACGGGAGCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
*
98679393 GGTTGCTGGACGGGAGCTGGAATGTGAGTGTTT
1 GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
*
98679426 GGTTGCTGGACAGTAGCTGGAATGT
1 GGTTGCTGGACAGGAGCTGGAATGT
98679451 CAAGAAGAAA
Statistics
Matches: 88, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 88 1.00
ACGTcount: A:0.17, C:0.10, G:0.44, T:0.30
Consensus pattern (33 bp):
GGTTGCTGGACAGGAGCTGGAATGTGAGTGTTT
Found at i:98683999 original size:6 final size:6
Alignment explanation
Indices: 98683988--98684013 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
98683978 AAGACGATCC
98683988 AACTGA AACTGA AACTGA AACTGA AA
1 AACTGA AACTGA AACTGA AACTGA AA
98684014 TTGGATTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.54, C:0.15, G:0.15, T:0.15
Consensus pattern (6 bp):
AACTGA
Found at i:98685783 original size:37 final size:37
Alignment explanation
Indices: 98685733--98685811 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
98685723 TTATTACGAA
* * *
98685733 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
98685770 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
98685807 GTCTT
1 GTCTT
98685812 TAGAACTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:98686008 original size:47 final size:47
Alignment explanation
Indices: 98685930--98686411 Score: 752
Period size: 47 Copynumber: 10.2 Consensus size: 47
98685920 CCCTTCGGGA
* * * * * *
98685930 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
98685977 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** * *
98686024 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCGTTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
98686071 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
98686120 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
98686167 CTTATCAC--ATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
98686212 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
98686261 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
98686308 CCTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
98686356 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
98686403 CTTATCACA
1 CTTATCACA
98686412 ATTTAGAATT
Statistics
Matches: 403, Mismatches: 25, Indels: 14
0.91 0.06 0.03
Matches are distributed among these distances:
45 44 0.11
47 225 0.56
48 46 0.11
49 88 0.22
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:98686124 original size:96 final size:94
Alignment explanation
Indices: 98685930--98686411 Score: 743
Period size: 96 Copynumber: 5.1 Consensus size: 94
98685920 CCCTTCGGGA
** * * * * * * *
98685930 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
98685995 TTTCACATTCATCACATCGGCCATTAAGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * *
98686024 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCGTTAAGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
98686089 ACTTTCACATTCATCACATCGGCTATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
98686120 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
98686183 TTTCACATTCATCACATCGGCCATTAAGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
98686212 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACACATAT--ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
98686277 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
98686308 CCTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 CTTA-TCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
98686373 CTTTCACATTCATCACATCGGCCATTAGGC
65 CTTTCACATTCATCACATCGGCCATTAGGC
98686403 CTTATCACA
1 CTTATCACA
98686412 ATTTAGAATT
Statistics
Matches: 358, Mismatches: 23, Indels: 14
0.91 0.06 0.04
Matches are distributed among these distances:
92 48 0.13
94 89 0.25
95 83 0.23
96 128 0.36
97 10 0.03
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (94 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:98686221 original size:22 final size:22
Alignment explanation
Indices: 98686148--98686221 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
98686138 TTTCACATTC
*
98686148 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAAGCCTT
*** * * *
98686170 ATCACATATACACTTTCA-CATT
1 ATCACATCGGC-CATTAAGCCTT
98686192 CATCACATCGGCCATTAAGCCTT
1 -ATCACATCGGCCATTAAGCCTT
98686215 ATCACAT
1 ATCACAT
98686222 ATATACACAC
Statistics
Matches: 36, Mismatches: 13, Indels: 6
0.65 0.24 0.11
Matches are distributed among these distances:
22 22 0.61
23 14 0.39
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.30
Consensus pattern (22 bp):
ATCACATCGGCCATTAAGCCTT
Found at i:98693564 original size:28 final size:28
Alignment explanation
Indices: 98693533--98693702 Score: 173
Period size: 28 Copynumber: 6.1 Consensus size: 28
98693523 TATTTTCATA
98693533 GCAATATATAAAAAGGAATGCCTTTGTG
1 GCAATATATAAAAAGGAATGCCTTTGTG
* * *
98693561 GCAAAATATTAAAATGAATGCCTTTGTG
1 GCAATATATAAAAAGGAATGCCTTTGTG
* * **
98693589 GGAAAATATAAAAAGGAATGCCTTCATG
1 GCAATATATAAAAAGGAATGCCTTTGTG
* *
98693617 GAAATATATGAAAAGGAATGCCTTTGTG
1 GCAATATATAAAAAGGAATGCCTTTGTG
* * * *
98693645 ACAATATATGAATAGAAATGCCTTTGTG
1 GCAATATATAAAAAGGAATGCCTTTGTG
* * *
98693673 GCAA-ACTCT-GAAAGGAATGTCTTTGTG
1 GCAATA-TATAAAAAGGAATGCCTTTGTG
98693700 GCA
1 GCA
98693703 GACTTTGATG
Statistics
Matches: 118, Mismatches: 23, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
27 18 0.15
28 100 0.85
ACGTcount: A:0.39, C:0.11, G:0.22, T:0.28
Consensus pattern (28 bp):
GCAATATATAAAAAGGAATGCCTTTGTG
Found at i:98693699 original size:27 final size:27
Alignment explanation
Indices: 98693544--98693816 Score: 160
Period size: 27 Copynumber: 10.0 Consensus size: 27
98693534 CAATATATAA
* * *
98693544 AAAGGAATGCCTTTGTGGCAAAATATTA
1 AAAGGAATGCCTTTGTGGCAAACT-CTG
* * * * *
98693572 AAATGAATGCCTTTGTGGGAAAATATAA
1 AAAGGAATGCCTTTGTGGCAAACTCT-G
** * *
98693600 AAAGGAATGCCTTCATGG-AAATATATG
1 AAAGGAATGCCTTTGTGGCAAA-CTCTG
* *
98693627 AAAAGGAATGCCTTTGTGACAATA-TATG
1 -AAAGGAATGCCTTTGTGGCAA-ACTCTG
*
98693655 AATAGAAATGCCTTTGTGGCAAACTCTG
1 AA-AGGAATGCCTTTGTGGCAAACTCTG
* * *
98693683 AAAGGAATGTCTTTGTGGCAGACTTTG
1 AAAGGAATGCCTTTGTGGCAAACTCTG
* * *
98693710 -ATGGAAATGCCTTTGTGGAAAACTCTA
1 AAAGG-AATGCCTTTGTGGCAAACTCTG
* * *
98693737 AAAGGAATGCCTTTGTGGTAGACAT-TA
1 AAAGGAATGCCTTTGTGGCAAAC-TCTG
* * * *
98693764 AAAGGAATGCCTTCGTAGCAAATTCTA
1 AAAGGAATGCCTTTGTGGCAAACTCTG
* *
98693791 AAAAGAATGCC-TTGATGGCATACTCT
1 AAAGGAATGCCTTTG-TGGCAAACTCT
98693817 ATATGATGGC
Statistics
Matches: 197, Mismatches: 36, Indels: 25
0.76 0.14 0.10
Matches are distributed among these distances:
26 6 0.03
27 101 0.51
28 87 0.44
29 2 0.01
30 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.29
Consensus pattern (27 bp):
AAAGGAATGCCTTTGTGGCAAACTCTG
Found at i:98693773 original size:54 final size:54
Alignment explanation
Indices: 98693533--98693803 Score: 201
Period size: 56 Copynumber: 4.9 Consensus size: 54
98693523 TATTTTCATA
* * *
98693533 GCAATATATAAAAAGGAATGCCTTTGTGGCAAAATATTAAAATGAATGCCTTTGTG
1 GCAACATATAAAAAGGAATGCCTTTGTGG-AAAAT-CTAAAAGGAATGCCTTTGTG
* * ** *
98693589 GGAAAATATAAAAAGGAATGCCTTCATGGAAATATATGAAAAGGAATGCCTTTGTG
1 GCAACATATAAAAAGGAATGCCTTTGTGGAAA-ATCT-AAAAGGAATGCCTTTGTG
* * * * * * * *
98693645 ACAATATATGAATAGAAATGCCTTTGTGGCAAACTCTGAAAGGAATGTCTTTGTG
1 GCAACATATAAAAAGGAATGCCTTTGTGG-AAAATCTAAAAGGAATGCCTTTGTG
** *
98693700 GCAGAC-T-T-TGATGGAAATGCCTTTGTGGAAAACTCTAAAAGGAATGCCTTTGTG
1 GCA-ACATATAAAAAGG-AATGCCTTTGTGGAAAA-TCTAAAAGGAATGCCTTTGTG
* * * * *
98693754 GTAGACAT-T-AAAAGGAATGCCTTCGTAGCAAATTCTAAAAAGAATGCCTT
1 GCA-ACATATAAAAAGGAATGCCTTTGT-GGAAAATCTAAAAGGAATGCCTT
98693804 GATGGCATAC
Statistics
Matches: 171, Mismatches: 36, Indels: 18
0.76 0.16 0.08
Matches are distributed among these distances:
53 4 0.02
54 64 0.37
55 32 0.19
56 68 0.40
57 3 0.02
ACGTcount: A:0.37, C:0.13, G:0.22, T:0.28
Consensus pattern (54 bp):
GCAACATATAAAAAGGAATGCCTTTGTGGAAAATCTAAAAGGAATGCCTTTGTG
Found at i:98695292 original size:41 final size:41
Alignment explanation
Indices: 98695235--98695317 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
98695225 TTTGAGTCCC
98695235 ATTTTTAAAGATTTTTATGTTTTTGAACTCGTTTTAGCTTA
1 ATTTTTAAAGATTTTTATGTTTTTGAACTCGTTTTAGCTTA
*
98695276 ATTTTTAATGATTTTTATGTTTTTGAACTCGTTTTAGCTTA
1 ATTTTTAAAGATTTTTATGTTTTTGAACTCGTTTTAGCTTA
98695317 A
1 A
98695318 CTTACTTAGC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.24, C:0.07, G:0.12, T:0.57
Consensus pattern (41 bp):
ATTTTTAAAGATTTTTATGTTTTTGAACTCGTTTTAGCTTA
Found at i:98696022 original size:31 final size:31
Alignment explanation
Indices: 98695984--98696241 Score: 257
Period size: 31 Copynumber: 8.3 Consensus size: 31
98695974 ACTGAATTCT
* * *
98695984 TGAAAAGGTTATATCCCAAACGTATATAAAA
1 TGAAAAGGTTATATCCGAAACGAATATCAAA
* * * *
98696015 TGAAAAGGTTATATCTGAAA-AATATATTAAT
1 TGAAAAGGTTATATCCGAAACGA-ATATCAAA
* * *
98696046 TGAAAAGATTATATCTGAAACGGATATCAAA
1 TGAAAAGGTTATATCCGAAACGAATATCAAA
* * * *
98696077 TGAAAAGGTTATATTCGAAATGAATATTAAT
1 TGAAAAGGTTATATCCGAAACGAATATCAAA
* * *
98696108 TGAAAAGGTTATATCTGAAATGGATATCAAA
1 TGAAAAGGTTATATCCGAAACGAATATCAAA
* * * *
98696139 TGAAAATGTTATATTCGTAACGAATATTAAA
1 TGAAAAGGTTATATCCGAAACGAATATCAAA
* * * * *
98696170 TGAAAATGTAATATCCAAAACCAGTATCAAA
1 TGAAAAGGTTATATCCGAAACGAATATCAAA
98696201 TGAAAAGGTTATATCCGAAACGAATATCAAA
1 TGAAAAGGTTATATCCGAAACGAATATCAAA
*
98696232 TAAAAAGGTT
1 TGAAAAGGTT
98696242 CAAAAGGTTG
Statistics
Matches: 182, Mismatches: 43, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
31 182 1.00
ACGTcount: A:0.48, C:0.09, G:0.15, T:0.29
Consensus pattern (31 bp):
TGAAAAGGTTATATCCGAAACGAATATCAAA
Found at i:98697936 original size:20 final size:19
Alignment explanation
Indices: 98697900--98697950 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
98697890 AAGGGCTATT
*
98697900 TTGTAAA-GTTGTAAAATAA
1 TTGTAAATG-TGTGAAATAA
98697919 GTTGTAAATGTGTGAAATAA
1 -TTGTAAATGTGTGAAATAA
98697939 TTG-AAAT-TGTGA
1 TTGTAAATGTGTGA
98697951 GTTGTTATAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 3 0.10
20 16 0.55
21 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.37
Consensus pattern (19 bp):
TTGTAAATGTGTGAAATAA
Found at i:98698653 original size:48 final size:48
Alignment explanation
Indices: 98698594--98698762 Score: 225
Period size: 48 Copynumber: 3.6 Consensus size: 48
98698584 GGTGATGTGT
* *
98698594 GCTAGTGTAAGACATTTCTGGGACATGCATCGGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACAA
* ** ** *
98698642 GCCAGTGTAAGACATGTCTGGGACATGCATCGGTATTGAGA-CGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACAA
*
98698688 GCTAGTGTAAGACATGTATGGGACATGCATCGGCCTTGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACAA
* *
98698736 ACTAGTGTAAGACCTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
98698763 GCGTCAGCTT
Statistics
Matches: 101, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
46 38 0.38
47 2 0.02
48 61 0.60
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACAA
Found at i:98698855 original size:49 final size:49
Alignment explanation
Indices: 98698597--98699002 Score: 216
Period size: 48 Copynumber: 8.5 Consensus size: 49
98698587 GATGTGTGCT
* * * * * *
98698597 AGTGTAAGACATTTCTGGGACAT-GCATCGGCCTCGAGATATACAAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATAAAAGCC
* *** * ** * *
98698645 AGTGTAAGACATGTCTGGGACAT-GCATCGGTATTG--AGACGAGAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATAAAAGCC
* * * * * * *
98698691 AGTGTAAGACATGTATGGGACAT-GCATCGGCCTTGAGATATACAAA-CT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATA-AAAGCC
* * * * ** *
98698739 AGTGTAAGACCTGTCTGGGACATGGCGTC-AGCTTG-TTG-T--GTGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATAAAAGCC
*
98698783 AGTGTAAGACCTGTCTGGGACATGGCATCGACAC-CGATAGA-AGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATA-AAAGCC
* * * *
98698832 AGTGTAAGACCTGTCTGGAACATGGCATCGGCCTCGATATATAAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATAAAAGCC
* * * ***
98698881 AGTGTAAGACCTGTCTGGGACATGGCGTCGACTTTGAT-G-TGCTAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATAAAAGCC
* * * * ***
98698928 AGTATAAGACCATGTCTGGGACATGGCGTCGACTTTGAT-G-TGCTAGCC
1 AGTGTAAGACC-TGTCTGGGACATGGCATCGACCTCGATAGATAAAAGCC
*
98698976 AGTATAAGACCATGTCTGGGACATGGC
1 AGTGTAAGACC-TGTCTGGGACATGGC
98699003 GTCAGCATCT
Statistics
Matches: 292, Mismatches: 51, Indels: 30
0.78 0.14 0.08
Matches are distributed among these distances:
44 28 0.10
45 2 0.01
46 41 0.14
47 14 0.05
48 124 0.42
49 82 0.28
50 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.25
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATAAAAGCC
Found at i:98698860 original size:142 final size:142
Alignment explanation
Indices: 98698641--98698960 Score: 391
Period size: 142 Copynumber: 2.3 Consensus size: 142
98698631 GAGATATACA
* ** ** * *
98698641 AGCCAGTGTAAGACATGTCTGGGACAT-GCATCGGTATTGAGACGAGAGCTAGTGTAAGACATGT
1 AGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGAGAAGAGAGCCAGTGTAAGACATGT
* *
98698705 ATGGGACATGCATCGGCCTTGAGATATACAAACT-AGTGTAAGACCTGTCTGGGACATGGCGTC-
66 ATGGAACATGCATCGGCCTCGAGATATA-AAACTCAGTGTAAGACCTGTCTGGGACATGGCGTCG
*
98698768 AGC-TTGTTGTG-T
130 A-CTTTGATGTGCT
* *
98698780 -GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGAAGAGAGCCAGTGTAAGACCT
1 AGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCG--AGAAGAGAGCCAGTGTAAGACAT
* * *
98698844 GTCTGGAACATGGCATCGGCCTCGATATATAAAAGTCAGTGTAAGACCTGTCTGGGACATGGCGT
64 GTATGGAACAT-GCATCGGCCTCGAGATATAAAACTCAGTGTAAGACCTGTCTGGGACATGGCGT
98698909 CGACTTTGATGTGCT
128 CGACTTTGATGTGCT
* *
98698924 AGCCAGTATAAGACCATGTCTGGGACATGGCGTCGAC
1 AGCCAGTGTAAGACC-TGTCTGGGACATGGCATCGAC
98698961 TTTGATGTGC
Statistics
Matches: 153, Mismatches: 18, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
138 24 0.16
139 8 0.05
141 33 0.22
142 47 0.31
143 8 0.05
144 1 0.01
145 12 0.08
146 20 0.13
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.24
Consensus pattern (142 bp):
AGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGAGAAGAGAGCCAGTGTAAGACATGT
ATGGAACATGCATCGGCCTCGAGATATAAAACTCAGTGTAAGACCTGTCTGGGACATGGCGTCGA
CTTTGATGTGCT
Found at i:98698947 original size:48 final size:48
Alignment explanation
Indices: 98698880--98699005 Score: 236
Period size: 48 Copynumber: 2.6 Consensus size: 48
98698870 ATATAAAAGT
*
98698880 CAGTGTAAGACC-TGTCTGGGACATGGCGTCGACTTTGATGTGCTAGC
1 CAGTATAAGACCATGTCTGGGACATGGCGTCGACTTTGATGTGCTAGC
98698927 CAGTATAAGACCATGTCTGGGACATGGCGTCGACTTTGATGTGCTAGC
1 CAGTATAAGACCATGTCTGGGACATGGCGTCGACTTTGATGTGCTAGC
98698975 CAGTATAAGACCATGTCTGGGACATGGCGTC
1 CAGTATAAGACCATGTCTGGGACATGGCGTC
98699006 AGCATCTTAT
Statistics
Matches: 77, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
47 11 0.14
48 66 0.86
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.26
Consensus pattern (48 bp):
CAGTATAAGACCATGTCTGGGACATGGCGTCGACTTTGATGTGCTAGC
Found at i:98706851 original size:38 final size:38
Alignment explanation
Indices: 98706809--98706915 Score: 178
Period size: 38 Copynumber: 2.8 Consensus size: 38
98706799 TATGTGACGC
98706809 AGGTTTAGCTCGGACGAGTAACCTGTATGTCATTATAA
1 AGGTTTAGCTCGGACGAGTAACCTGTATGTCATTATAA
* * *
98706847 AGGTTTAACTCGAACGAGTAACCTATATGTCATTATAA
1 AGGTTTAGCTCGGACGAGTAACCTGTATGTCATTATAA
98706885 AGGTTTAGCTCGGACGAGTAACCTGATATGT
1 AGGTTTAGCTCGGACGAGTAACCTG-TATGT
98706916 ATATATATTT
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
38 57 0.92
39 5 0.08
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (38 bp):
AGGTTTAGCTCGGACGAGTAACCTGTATGTCATTATAA
Found at i:98710576 original size:25 final size:25
Alignment explanation
Indices: 98710542--98710596 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
98710532 TGAACACGTG
98710542 ATTCTGTATGATGC-CTTTGTGGCAT
1 ATTCTGTATGATGCTC-TTGTGGCAT
*
98710567 ATTCTGTATGTTGCTCTTGTGGCAT
1 ATTCTGTATGATGCTCTTGTGGCAT
98710592 ATTCT
1 ATTCT
98710597 ATGTGGCCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 27 0.96
26 1 0.04
ACGTcount: A:0.15, C:0.16, G:0.22, T:0.47
Consensus pattern (25 bp):
ATTCTGTATGATGCTCTTGTGGCAT
Found at i:98717325 original size:46 final size:44
Alignment explanation
Indices: 98717054--98717327 Score: 137
Period size: 46 Copynumber: 5.9 Consensus size: 44
98717044 GGGTAAAGTA
*
98717054 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAT-AACCGTG
1 CCGATG-CATGTCCCAAACAT-GTCTTACACTAG--CTCACATCAA---TG
** * * * *
98717104 TTGATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCTCATAA
1 CCGATG-CATGTCCCAAACAT-GTCTTACACTAGCTCACATC-AAT-G
* * * * * *
98717150 CCGATGCATGAT-CCAGACATGTCTTATACTTGCTTACGTCCCAAGG
1 CCGATGCATG-TCCCAAACATGTCTTACACTAGCTCACAT--CAATG
* *
98717196 CTGATGCATGTCCCAAACATGTCTTACACTAGCGCTCGTC-TCAATG
1 CCGATGCATGTCCCAAACATGTCTTACACTA--GCTC-ACATCAATG
* * *
98717242 CCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCACAT-AATGTGG
1 CCGATG-CATGTCCCAAACAT-GTCTTACACTAGCTCACATCAA--T-G
*
98717290 CCGATGCATGTCCCAAACATGTCTTACCCTAGCTCACA
1 CCGATGCATGTCCCAAACATGTCTTACACTAGCTCACA
98717328 CAAATGACCC
Statistics
Matches: 176, Mismatches: 30, Indels: 40
0.72 0.12 0.16
Matches are distributed among these distances:
44 9 0.05
45 18 0.10
46 68 0.39
47 26 0.15
48 23 0.13
49 2 0.01
50 30 0.17
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.27
Consensus pattern (44 bp):
CCGATGCATGTCCCAAACATGTCTTACACTAGCTCACATCAATG
Found at i:98717444 original size:22 final size:23
Alignment explanation
Indices: 98717414--98717462 Score: 91
Period size: 22 Copynumber: 2.2 Consensus size: 23
98717404 ATCATTACAC
98717414 ATTCTCAATCTCGAAATCAAGCA
1 ATTCTCAATCTCGAAATCAAGCA
98717437 ATTC-CAATCTCGAAATCAAGCA
1 ATTCTCAATCTCGAAATCAAGCA
98717459 ATTC
1 ATTC
98717463 AGGCCATATC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 22 0.85
23 4 0.15
ACGTcount: A:0.39, C:0.27, G:0.08, T:0.27
Consensus pattern (23 bp):
ATTCTCAATCTCGAAATCAAGCA
Found at i:98724802 original size:46 final size:45
Alignment explanation
Indices: 98724659--98724873 Score: 156
Period size: 46 Copynumber: 4.6 Consensus size: 45
98724649 GGTAAAGTGC
* * * *
98724659 CGATGCCATGTCCCAGACATGGTCTTACACTG-ACACATCTC-GTAGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGCACTCGTCTCAAT-GT
* ** * * *
98724705 CGATGCATGTCCTAGACATGTCTTATGCTGGC-TTACGTCCCAA-GG
1 CGATGCATGTCCCAGACATGTCTTACACT-GCACT-CGTCTCAATGT
98724750 CTGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGT
1 C-GATGCATGTCCCAGACATGTCTTACACT-GCACTCGTCTCAATGT
* *
98724797 CGATGCCGTGTCCCAGACATGGTCTTACACTG-GCTC-TCAT-AATGT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGCACTCGTC-TCAATGT
98724842 GGCCGATGCATGTCCCAGACATGTCTTACACT
1 ---CGATGCATGTCCCAGACATGTCTTACACT
98724874 AGCTCACACA
Statistics
Matches: 137, Mismatches: 19, Indels: 26
0.75 0.10 0.14
Matches are distributed among these distances:
44 8 0.06
45 23 0.17
46 61 0.45
47 30 0.22
48 15 0.11
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTGCACTCGTCTCAATGT
Found at i:98733363 original size:23 final size:23
Alignment explanation
Indices: 98733333--98733378 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
98733323 ATCATTACAT
98733333 TTTCCTTGATGAAAAGTTAATTA
1 TTTCCTTGATGAAAAGTTAATTA
98733356 TTTCCTTGATGAAAAGTTAATTA
1 TTTCCTTGATGAAAAGTTAATTA
98733379 CTAACATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.09, G:0.13, T:0.43
Consensus pattern (23 bp):
TTTCCTTGATGAAAAGTTAATTA
Found at i:98735130 original size:50 final size:51
Alignment explanation
Indices: 98735007--98735344 Score: 341
Period size: 50 Copynumber: 6.7 Consensus size: 51
98734997 AACAATTGTA
* * * * *
98735007 TAGTACTATGTGCAGGCTACTATGTGT-TTAAGATGGTTTTAGGTCACGTGTG
1 TAGTACTAAGTGCAGGCTACTACGTGTACTCAGATAG--TTAGGTCACGTGTG
* * * * * * *
98735059 TAGTATTAATTACAGGTTACTACGTGCACT-AGATAGTTAGGTCCCATGTG
1 TAGTACTAAGTGCAGGCTACTACGTGTACTCAGATAGTTAGGTCACGTGTG
* * * * * *
98735109 TAGTACTAAGTGCAGGCTACTATGCGTACTCAGAAACTTCA-ATCGCGTGTG
1 TAGTACTAAGTGCAGGCTACTACGTGTACTCAGATAGTT-AGGTCACGTGTG
* *
98735160 TAGTACTAAGTGCAGGCTACTACCTGTA-TCAGATGGTTAGGTCACGTGTG
1 TAGTACTAAGTGCAGGCTACTACGTGTACTCAGATAGTTAGGTCACGTGTG
*
98735210 TAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATGGTTAGGTCACGTGTG
1 TAGTACTAAGTGCAGGCTACTACGTGTACTCAGATAGTTAGGTCACGTGTG
* * * * *
98735260 TAGTACTAAGTGCAGGCTACTACGTGTAC-CGGATTGGT-GGTCGCATGTG
1 TAGTACTAAGTGCAGGCTACTACGTGTACTCAGATAGTTAGGTCACGTGTG
* *
98735309 TAGTACTAAGTGCAGGCTACTATGCGTAC-CAGATAG
1 TAGTACTAAGTGCAGGCTACTACGTGTACTCAGATAG
98735345 CTTCGGTTAC
Statistics
Matches: 240, Mismatches: 41, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
49 42 0.17
50 133 0.55
51 38 0.16
52 26 0.11
53 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (51 bp):
TAGTACTAAGTGCAGGCTACTACGTGTACTCAGATAGTTAGGTCACGTGTG
Found at i:98735376 original size:100 final size:101
Alignment explanation
Indices: 98735007--98735351 Score: 356
Period size: 101 Copynumber: 3.4 Consensus size: 101
98734997 AACAATTGTA
* * *** * * * * * *
98735007 TAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTTTAGGTCACGTGTGTAGTATTAATTAC
1 TAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG-CTTCGGTCACGTGTGTAGTACTAAGTGC
* * * * * *
98735072 AGGTTACTACGTGCACTAGATAGTTAGGTCCCATGTG
65 AGGCTACTACCTGTACCAGATGGTTAGGTCACATGTG
* ** *
98735109 TAGTACTAAGTGCAGGCTACTATGCGTACTCAGA-AACTTCAATCGCGTGTGTAGTACTAAGTGC
1 TAGTACTAAGTGCAGGCTACTATGCGTAC-CAGATAGCTTCGGTCACGTGTGTAGTACTAAGTGC
* *
98735173 AGGCTACTACCTGTATCAGATGGTTAGGTCACGTGTG
65 AGGCTACTACCTGTACCAGATGGTTAGGTCACATGTG
* * * * *
98735210 TAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-GGTTAGGTCACGTGTGTAGTACTAAGTGCA
1 TAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGCTTCGGTCACGTGTGTAGTACTAAGTGCA
* * *
98735274 GGCTACTACGTGTACCGGATTGG-T-GGTCGCATGTG
66 GGCTACTACCTGTACCAGA-TGGTTAGGTCACATGTG
98735309 TAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGCTTCGGT
1 TAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGCTTCGGT
98735352 TACAAGGGTG
Statistics
Matches: 197, Mismatches: 42, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
99 40 0.20
100 51 0.26
101 78 0.40
102 25 0.13
103 3 0.02
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.31
Consensus pattern (101 bp):
TAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGCTTCGGTCACGTGTGTAGTACTAAGTGCA
GGCTACTACCTGTACCAGATGGTTAGGTCACATGTG
Found at i:98741608 original size:50 final size:50
Alignment explanation
Indices: 98741500--98741827 Score: 331
Period size: 50 Copynumber: 6.5 Consensus size: 50
98741490 TGAGAACAAT
* * * * *
98741500 TGTGTAGTACTATGTGCAGGCTACTATGTGT-TTAAGATGGTTTTAGGCCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AGATAG--TTAGGTCACA
* * * *
98741552 TGTGTAGTATTAAGTACAGGTTACTACGTGTACTAGATAGTTAGGTCCCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAGTTAGGTCACA
* * ** * * * * * *
98741602 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGACAACTTCGATCGCG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGA-TAGTTAGGTCACA
* *
98741653 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AGATAGTTAGGTCACA
* *
98741703 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AGATAGTTAGGTCACA
* *
98741753 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT-GGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAGTTAGGTCACA
* *
98741802 TGTGTAATACTAAGTGTAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
98741828 TGCATACCAG
Statistics
Matches: 235, Mismatches: 37, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
49 30 0.13
50 134 0.57
51 39 0.17
52 31 0.13
53 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAGTTAGGTCACA
Found at i:98741696 original size:101 final size:99
Alignment explanation
Indices: 98741552--98741838 Score: 351
Period size: 101 Copynumber: 2.9 Consensus size: 99
98741542 TTAGGCCACA
* * * *
98741552 TGTGTAGTATTAAGTACAGGTTACTACGTGTACTAGATAGTTAGGTCCCATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-AGATAGTTAGGTCACATGTGTAGTACTAAGT
* * *
98741617 GCAGGCTACTATGCGTACCCGACAACTTCGATCGCG
65 GCAGGCTACTATGCGTACCAGA-AACTTAGATCACG
* *
98741653 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CAGATAGTTAGGTCACATGTGTAGTACTAAGT
* * * *** *
98741718 GCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
65 GCAGGCTACTATGCGTACCAGAAACTTAGATCACG
* *
98741753 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT-GGTCACATGTGTAATACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CAGATAGTTAGGTCACATGTGTAGTACTAAGT
* *
98741817 GTAGGCTACTATGCATACCAGA
65 GCAGGCTACTATGCGTACCAGA
98741839 TAGCTTCGGT
Statistics
Matches: 160, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
99 37 0.23
100 47 0.29
101 75 0.47
102 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (99 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACAGATAGTTAGGTCACATGTGTAGTACTAAGTG
CAGGCTACTATGCGTACCAGAAACTTAGATCACG
Found at i:98741776 original size:151 final size:152
Alignment explanation
Indices: 98741500--98741778 Score: 418
Period size: 151 Copynumber: 1.8 Consensus size: 152
98741490 TGAGAACAAT
* * * *
98741500 TGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTTTAGGCCACATGTGTAGTATTAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAGATGG-TTTAGGCCACATGTGTAGTACTAA
* *
98741565 GTACAGGTTACTACGTGTACTAGATAGTTAGGTCCCATGTGTAGTACTAAGTGCAGGCTACTATG
65 GTACAGGCTACTACGTGTACTAGATAGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATG
98741630 CGTACCCGACAACTTCGATCGCG
130 CGTACCCGACAACTTCGATCGCG
* * *
98741653 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG-TTAGGTCACGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAGATGGTTTAGGCCACATGTGTAGTACTAAG
* * *
98741717 TGCAGGCTACTACGTGTA-TCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
66 TACAGGCTACTACGTGTACT-AGATAGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
98741779 CGTGTACCAG
Statistics
Matches: 113, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
150 1 0.01
151 76 0.67
153 36 0.32
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (152 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAGATGGTTTAGGCCACATGTGTAGTACTAAG
TACAGGCTACTACGTGTACTAGATAGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGC
GTACCCGACAACTTCGATCGCG
Found at i:98742047 original size:16 final size:15
Alignment explanation
Indices: 98742026--98742055 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
98742016 GAATGAAGTA
98742026 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
98742042 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
98742056 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:98749264 original size:127 final size:126
Alignment explanation
Indices: 98749038--98749354 Score: 399
Period size: 127 Copynumber: 2.5 Consensus size: 126
98749028 CGAAAAACCG
* * * *
98749038 AACCCAGCACGGTAGGGCACGA-TCCCTCGAATTTCTAAACATTGAACATTGCCTTGCTTTAGAA
1 AACCCAGCACGATAGGGCACGATTCCC-CG-ATTTCCAAACATTGAACATTGCCTTGTTTTAAAA
* *
98749102 TTTAGAAAACTAGAGTGAAATTCAAAAGGAATATTC-AGTTATTTTGAACAAACAGGAAAAT-GA
64 TTTAGAAAACTAGAGTGAAATTCAAAAGGAATATTCGA-CTATTTTGAACAAACACG-AAATCGA
* * *
98749165 AACCCAGCACGATAAGGCACGATTCCCCGAGTTTCCAAAAATTGAACATAGCCTTGTTTTAAAAT
1 AACCCAGCACGATAGGGCACGATTCCCCGA-TTTCCAAACATTGAACATTGCCTTGTTTTAAAAT
* * *
98749230 TTGGGAAAC-ACGAGTGAAATTCTAAAGGAATATTCGACTATTTTGAACAAACACGAAATCGA
65 TTAGAAAACTA-GAGTGAAATTCAAAAGGAATATTCGACTATTTTGAACAAACACGAAATCGA
* **
98749292 AACCCAGCACGATAGGGCACGATTTCCCGATTTCCCAAACATCAAACATTGCCTTCGTTTTAA
1 AACCCAGCACGATAGGGCACGATTCCCCGATTT-CCAAACATTGAACATTGCCTT-GTTTTAA
98749355 GGAATTTTCA
Statistics
Matches: 165, Mismatches: 18, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
126 9 0.05
127 144 0.87
128 12 0.07
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (126 bp):
AACCCAGCACGATAGGGCACGATTCCCCGATTTCCAAACATTGAACATTGCCTTGTTTTAAAATT
TAGAAAACTAGAGTGAAATTCAAAAGGAATATTCGACTATTTTGAACAAACACGAAATCGA
Found at i:98752052 original size:45 final size:43
Alignment explanation
Indices: 98751985--98752155 Score: 175
Period size: 45 Copynumber: 3.8 Consensus size: 43
98751975 ACTACAATTG
98751985 TCCACTGCAACTTCAGGGAGATAAGACTTGTAATTTTTATCTTGA
1 TCCACTGCAACTTCAGGGAGATAAGA-TTGTAATTTTTATC-TGA
* ** * * **
98752030 TCTACTGCAACTTCACAGAGATAAGGATTGTGACTTCGATCT-A
1 TCCACTGCAACTTCAGGGAGATAA-GATTGTAATTTTTATCTGA
* *
98752073 CTCCACTGCAACTTCAGGGAGATAAGATCTGCTAA-CTTTAGTCTGC
1 -TCCACTGCAACTTCAGGGAGATAAGAT-TG-TAATTTTTA-TCTGA
98752119 TCCACTGCAACTTCAGGGAGATAAGACTTGTAATTTT
1 TCCACTGCAACTTCAGGGAGATAAGA-TTGTAATTTT
98752156 CAGCCTGTTA
Statistics
Matches: 102, Mismatches: 16, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
43 4 0.04
44 29 0.28
45 66 0.65
46 3 0.03
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.32
Consensus pattern (43 bp):
TCCACTGCAACTTCAGGGAGATAAGATTGTAATTTTTATCTGA
Found at i:98752077 original size:102 final size:102
Alignment explanation
Indices: 98751886--98752079 Score: 227
Period size: 102 Copynumber: 1.9 Consensus size: 102
98751876 ATCCTGCTCT
* *
98751886 ACTGCAACTTCAGAGAGATAAGGATTGTGACTTTGATCTGCTCCACTGCAACTTCAAGGAGATAA
1 ACTGCAACTTCAGAGAGATAAGGATTGTAACTTTGATCTGATCCACTGCAACTTCAAGGAGATAA
* *
98751951 GATCTGCTAACTTTAGTCTGCTCCACTACAATTGTCC
66 GATCTGCTAACTTGAGTCTACTCCACTACAATTGTCC
* * * *
98751988 ACTGCAACTTCAGGGAGATAA-GACTTGTAATTTTTATCTTGATCTACTGCAACTTCACA-GAGA
1 ACTGCAACTTCAGAGAGATAAGGA-TTGTAACTTTGATC-TGATCCACTGCAACTTCA-AGGAGA
*
98752051 TAAGGAT-TG-TGACTTCGA-TCTACTCCACT
63 TAA-GATCTGCTAACTT-GAGTCTACTCCACT
98752080 GCAACTTCAG
Statistics
Matches: 78, Mismatches: 9, Indels: 10
0.80 0.09 0.10
Matches are distributed among these distances:
101 2 0.03
102 46 0.59
103 26 0.33
104 4 0.05
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (102 bp):
ACTGCAACTTCAGAGAGATAAGGATTGTAACTTTGATCTGATCCACTGCAACTTCAAGGAGATAA
GATCTGCTAACTTGAGTCTACTCCACTACAATTGTCC
Found at i:98752241 original size:88 final size:88
Alignment explanation
Indices: 98752133--98752324 Score: 305
Period size: 88 Copynumber: 2.2 Consensus size: 88
98752123 CTGCAACTTC
*
98752133 AGGGAGATAAGA-CTTGTAATTTTCAGCCTGTTACCCTACTGCTTAGGAGGTTAAGGCTCACCGT
1 AGGGAGATAAGATC-TGTAATTTTCAGCCTGTTACCCTACTACTTAGGAGGTTAAGGCTCACCGT
**
98752197 CTTCGATTTGCTCCACTACTGCTT
65 CTTCGATCCGCTCCACTACTGCTT
* * *
98752221 AGGGAGACAAGATCTGTAATTTTCGGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTCACCGTC
1 AGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTACTTAGGAGGTTAAGGCTCACCGTC
*
98752286 TTTGATCCGCTCCACTACTGCTT
66 TTCGATCCGCTCCACTACTGCTT
98752309 AGGGAGATAAGATCTG
1 AGGGAGATAAGATCTG
98752325 CGAACTCTCC
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
88 94 0.99
89 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.23, T:0.31
Consensus pattern (88 bp):
AGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTACTTAGGAGGTTAAGGCTCACCGTC
TTCGATCCGCTCCACTACTGCTT
Found at i:98760539 original size:19 final size:19
Alignment explanation
Indices: 98760515--98760554 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
98760505 TATGACCTTT
*
98760515 AATGCATATG-ATGTAATGC
1 AATGCAAATGCATG-AATGC
98760534 AATGCAAATGCATGAATGC
1 AATGCAAATGCATGAATGC
98760553 AA
1 AA
98760555 AGGAGACATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 16 0.84
20 3 0.16
ACGTcount: A:0.42, C:0.12, G:0.20, T:0.25
Consensus pattern (19 bp):
AATGCAAATGCATGAATGC
Found at i:98764126 original size:127 final size:127
Alignment explanation
Indices: 98763810--98764135 Score: 381
Period size: 127 Copynumber: 2.6 Consensus size: 127
98763800 AGTCTAACGA
* * * *
98763810 AAAATCGGAATCCAGCACGGTAGGGCACGA-TCCCTCGAATTTCTAAACATTGAACATTGCCTTG
1 AAAATCGAAACCCAGCACGATAGGGCACGATTCCCT-G-ATTTCAAAACATTGAACATTGCCTTG
* * ** *
98763874 CTTTAAAATTTAGAAAACTAGAGTGAAATTCAAAAGGAATATTCGGTTATTTTGAACAAACAGG
64 TTTTAAAATTTAGAAAACTAGAGTAAAATTCAAAAGGAATATTCGACTATTTTGAACAAACAGC
* * * *
98763938 AAAA-CAAAACCCAGCACGATAGGGCACGATTCCCCGAGTTTCAAAAAATTGAACATAGCCTTGT
1 AAAATCGAAACCCAGCACGATAGGGCACGATTCCCTGA-TTTCAAAACATTGAACATTGCCTTGT
* * *
98764002 TTTAAAATTTGGGAAAC-ACGAGTAAAATTCTAAAGGAATATTCGACTATTTTGAACAAACA-C
65 TTTAAAATTTAGAAAACTA-GAGTAAAATTCAAAAGGAATATTCGACTATTTTGAACAAACAGC
* * ** *
98764064 AAAATCGAAACCCAGCACGATAGGGCACGATTTCCTGATTTCCCAAACATCAAATATTGCCTTTG
1 AAAATCGAAACCCAGCACGATAGGGCACGATTCCCTGATTT-CAAAACATTGAACATTGCC-TTG
98764129 TTTTAAA
64 TTTTAAA
98764136 GAATTTTCAA
Statistics
Matches: 167, Mismatches: 25, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
126 9 0.05
127 140 0.84
128 18 0.11
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.26
Consensus pattern (127 bp):
AAAATCGAAACCCAGCACGATAGGGCACGATTCCCTGATTTCAAAACATTGAACATTGCCTTGTT
TTAAAATTTAGAAAACTAGAGTAAAATTCAAAAGGAATATTCGACTATTTTGAACAAACAGC
Found at i:98764581 original size:35 final size:37
Alignment explanation
Indices: 98764527--98764596 Score: 90
Period size: 35 Copynumber: 1.9 Consensus size: 37
98764517 TATAATAACC
*
98764527 TATAAAAAACGATAAAGAC-AAC-CAAACACATATGA
1 TATAAAAAACAATAAAGACAAACACAAACACATATGA
* *
98764562 TATACAAAACAATATAGACAAACTACAAACACATA
1 TATAAAAAACAATAAAGACAAAC-ACAAACACATA
98764597 AATAATTATT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
35 16 0.55
36 3 0.10
38 10 0.34
ACGTcount: A:0.60, C:0.19, G:0.06, T:0.16
Consensus pattern (37 bp):
TATAAAAAACAATAAAGACAAACACAAACACATATGA
Done.