Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 295 of 349
Found at i:98768978 original size:10 final size:11
Alignment explanation
Indices: 98768955--98768983 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
98768945 AATTTGTAGA
98768955 TAATATATAAT
1 TAATATATAAT
98768966 TAATATA-AAT
1 TAATATATAAT
98768976 TAATATAT
1 TAATATAT
98768984 TGGATTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (11 bp):
TAATATATAAT
Found at i:98769788 original size:3 final size:3
Alignment explanation
Indices: 98769780--98769813 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
98769770 ACTCCTTTTA
98769780 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
98769814 TTGTTAACGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:98771044 original size:6 final size:6
Alignment explanation
Indices: 98771033--98771061 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
98771023 TTATACCTTA
98771033 AATTAC AATTAC AATTAC AATTAC AATTA
1 AATTAC AATTAC AATTAC AATTAC AATTA
98771062 TATACATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (6 bp):
AATTAC
Found at i:98778898 original size:17 final size:17
Alignment explanation
Indices: 98778876--98778968 Score: 70
Period size: 17 Copynumber: 5.5 Consensus size: 17
98778866 GAGTGCGCAT
98778876 GTGAGCTCTCAAGTTTG
1 GTGAGCTCTCAAGTTTG
98778893 GTGAGCTCGT--AGTCTTG
1 GTGAGCTC-TCAAGT-TTG
* *
98778910 GCGAGCTCAT-ATGTTTG
1 GTGAGCTC-TCAAGTTTG
* *
98778927 GTGAGCT-TGCAGGATTG
1 GTGAGCTCT-CAAGTTTG
98778944 GTGAGCTCTC-AGTTTGG
1 GTGAGCTCTCAAGTTT-G
98778961 GTGAGCTC
1 GTGAGCTC
98778969 ATACTTTTTA
Statistics
Matches: 61, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
15 1 0.02
16 6 0.10
17 50 0.82
18 4 0.07
ACGTcount: A:0.15, C:0.17, G:0.34, T:0.33
Consensus pattern (17 bp):
GTGAGCTCTCAAGTTTG
Found at i:98778950 original size:34 final size:33
Alignment explanation
Indices: 98778878--98778968 Score: 94
Period size: 34 Copynumber: 2.7 Consensus size: 33
98778868 GTGCGCATGT
* **
98778878 GAGCTCTCAAGTTTGGTGAGCTCGTAGTCTTGGC
1 GAGCTCTC-AGTTTGGTGAGCTCGCAGGATTGGC
* *
98778912 GAGCTCAT-ATGTTTGGTGAGCTTGCAGGATTGGT
1 GAGCTC-TCA-GTTTGGTGAGCTCGCAGGATTGGC
98778946 GAGCTCTCAGTTTGGGTGAGCTC
1 GAGCTCTCAGTTT-GGTGAGCTC
98778969 ATACTTTTTA
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
33 6 0.13
34 40 0.85
35 1 0.02
ACGTcount: A:0.15, C:0.18, G:0.34, T:0.33
Consensus pattern (33 bp):
GAGCTCTCAGTTTGGTGAGCTCGCAGGATTGGC
Found at i:98782012 original size:41 final size:40
Alignment explanation
Indices: 98781967--98782082 Score: 114
Period size: 40 Copynumber: 2.9 Consensus size: 40
98781957 AGTGCCCTTC
98781967 ATAGCCGAAGCTATCTTAG-TCTCGCACACTAAGTG-TCATAT
1 ATAGCCGAAGCTAT-TTAGAT-TCGCACACTAAGTGCT-ATAT
* * *
98782008 ATAGCTGAAGCTATTTCGATTCGCACACTAAGTGCTTTAT
1 ATAGCCGAAGCTATTTAGATTCGCACACTAAGTGCTATAT
* *
98782048 ATGGCCGAAGCT-TTCTCGATAT-GCACACTAAGTGC
1 ATAGCCGAAGCTATT-TAGAT-TCGCACACTAAGTGC
98782083 CAAACATAAT
Statistics
Matches: 66, Mismatches: 5, Indels: 9
0.82 0.06 0.11
Matches are distributed among these distances:
39 2 0.03
40 48 0.73
41 16 0.24
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (40 bp):
ATAGCCGAAGCTATTTAGATTCGCACACTAAGTGCTATAT
Found at i:98782049 original size:40 final size:42
Alignment explanation
Indices: 98781988--98782082 Score: 119
Period size: 40 Copynumber: 2.4 Consensus size: 42
98781978 TATCTTAGTC
*
98781988 TCGCACACTAAGTG-TCATATATAGCTGAAGCTATT-TCGAT-
1 TCGCACACTAAGTGCTCATATATAGCCGAAGCT-TTCTCGATA
* *
98782028 TCGCACACTAAGTGCT-TTATATGGCCGAAGCTTTCTCGATA
1 TCGCACACTAAGTGCTCATATATAGCCGAAGCTTTCTCGATA
98782069 T-GCACACTAAGTGC
1 TCGCACACTAAGTGC
98782083 CAAACATAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
39 2 0.04
40 45 0.92
41 2 0.04
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (42 bp):
TCGCACACTAAGTGCTCATATATAGCCGAAGCTTTCTCGATA
Found at i:98782547 original size:28 final size:29
Alignment explanation
Indices: 98782488--98782547 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 29
98782478 TTATCATTTA
* *
98782488 TTTCACAATTTAACCCCTTAATTTACACT
1 TTTCACAATTTAACCCCTTAATATACAAT
* * *
98782517 TTTCTCAATTTAA-TCCTTAATATGCAAT
1 TTTCACAATTTAACCCCTTAATATACAAT
98782545 TTT
1 TTT
98782548 TACTAAAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 14 0.54
29 12 0.46
ACGTcount: A:0.30, C:0.22, G:0.02, T:0.47
Consensus pattern (29 bp):
TTTCACAATTTAACCCCTTAATATACAAT
Found at i:98786011 original size:18 final size:18
Alignment explanation
Indices: 98785990--98786049 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
98785980 AATTGGTTAA
*
98785990 TCAGTAACAATCATTTAT
1 TCAGTAACAGTCATTTAT
* *
98786008 TCAGTATCAGTCGTTTAT
1 TCAGTAACAGTCATTTAT
* * *
98786026 TTAGTAATAGTCAATTAT
1 TCAGTAACAGTCATTTAT
98786044 TCAGTA
1 TCAGTA
98786050 GTAGTCAGTC
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.33, C:0.13, G:0.12, T:0.42
Consensus pattern (18 bp):
TCAGTAACAGTCATTTAT
Found at i:98786054 original size:18 final size:17
Alignment explanation
Indices: 98786004--98786056 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 17
98785994 TAACAATCAT
**
98786004 TTATTCAGTATCAGTCGT
1 TTATTCAGTAT-AGTCAA
*
98786022 TTATTTAGTAATAGTCAA
1 TTATTCAGT-ATAGTCAA
98786040 TTATTCAGTAGTAGTCA
1 TTATTCAGTA-TAGTCA
98786057 GTCTTTAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 1 0.03
18 26 0.90
19 2 0.07
ACGTcount: A:0.30, C:0.11, G:0.15, T:0.43
Consensus pattern (17 bp):
TTATTCAGTATAGTCAA
Found at i:98786201 original size:12 final size:12
Alignment explanation
Indices: 98786180--98786212 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
98786170 ACACTATGTC
*
98786180 GTAACGGTAATA
1 GTAACAGTAATA
98786192 GTAACAGTAATA
1 GTAACAGTAATA
98786204 GTAACAGTA
1 GTAACAGTA
98786213 GCGGTACATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.45, C:0.09, G:0.21, T:0.24
Consensus pattern (12 bp):
GTAACAGTAATA
Found at i:98788725 original size:44 final size:43
Alignment explanation
Indices: 98788631--98788764 Score: 121
Period size: 44 Copynumber: 3.1 Consensus size: 43
98788621 GTAATCAAAT
* * * *
98788631 ATCGATGCC-ACTGTCCCAGACAGGGTCTTACACGAGA--TCAT
1 ATCGATGCCAAC-GTCCCAGACATGGTCTTACACAAAATCTCAA
* * * * * *
98788672 ATACGATGCCCATGTCTCAGATATGGTTTTACACGTAAATCTCAA
1 AT-CGATGCCAACGTCCCAGACATGGTCTTACAC-AAAATCTCAA
*
98788717 ATCGATGCCAACGTCCCAGACATGGTCTTACACAAAATCTCAT
1 ATCGATGCCAACGTCCCAGACATGGTCTTACACAAAATCTCAA
98788760 ATCGA
1 ATCGA
98788765 AATCCTATGT
Statistics
Matches: 73, Mismatches: 15, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
41 2 0.03
42 24 0.33
43 16 0.22
44 26 0.36
45 5 0.07
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (43 bp):
ATCGATGCCAACGTCCCAGACATGGTCTTACACAAAATCTCAA
Found at i:98792095 original size:25 final size:25
Alignment explanation
Indices: 98792067--98792149 Score: 78
Period size: 25 Copynumber: 3.3 Consensus size: 25
98792057 CAAAACTTTC
*
98792067 ACACATATAAAATCACATAATGTAA
1 ACACATATAAAATCACATAATATAA
* * * **
98792092 ACACATAAAATAAT-ATTAAAATATTC
1 ACACATATAA-AATCA-CATAATATAA
*
98792118 ACACATATAAAATCACATAATTTAA
1 ACACATATAAAATCACATAATATAA
98792143 ACACATA
1 ACACATA
98792150 AAATAATATT
Statistics
Matches: 43, Mismatches: 12, Indels: 6
0.70 0.20 0.10
Matches are distributed among these distances:
25 25 0.58
26 18 0.42
ACGTcount: A:0.57, C:0.16, G:0.01, T:0.27
Consensus pattern (25 bp):
ACACATATAAAATCACATAATATAA
Found at i:98792119 original size:51 final size:51
Alignment explanation
Indices: 98792064--98792165 Score: 195
Period size: 51 Copynumber: 2.0 Consensus size: 51
98792054 ACACAAAACT
98792064 TTCACACATATAAAATCACATAATGTAAACACATAAAATAATATTAAAATA
1 TTCACACATATAAAATCACATAATGTAAACACATAAAATAATATTAAAATA
*
98792115 TTCACACATATAAAATCACATAATTTAAACACATAAAATAATATTAAAATA
1 TTCACACATATAAAATCACATAATGTAAACACATAAAATAATATTAAAATA
98792166 ATTTTCTGAC
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.57, C:0.14, G:0.01, T:0.28
Consensus pattern (51 bp):
TTCACACATATAAAATCACATAATGTAAACACATAAAATAATATTAAAATA
Found at i:98795120 original size:22 final size:22
Alignment explanation
Indices: 98795068--98795121 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
98795058 ATTGCCATGG
*
98795068 ATGTATTATGCCAATATAATTGA
1 ATGT-TTATGCCAATATAATTAA
* *
98795091 TTGATTATGCCAATATAATTAA
1 ATGTTTATGCCAATATAATTAA
98795113 ATGTTTATG
1 ATGTTTATG
98795122 TGTTAAAAGA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
22 24 0.92
23 2 0.08
ACGTcount: A:0.37, C:0.07, G:0.13, T:0.43
Consensus pattern (22 bp):
ATGTTTATGCCAATATAATTAA
Found at i:98802333 original size:42 final size:42
Alignment explanation
Indices: 98802274--98802358 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
98802264 ACATTAAAGT
98802274 AAGTTTAGAAACCTTCTAATAATGTAATACAAGTTGAAAAAC
1 AAGTTTAGAAACCTTCTAATAATGTAATACAAGTTGAAAAAC
98802316 AAGTTTAGAAACCTTCTAATAATGTAATACAAGTTGAAAAAC
1 AAGTTTAGAAACCTTCTAATAATGTAATACAAGTTGAAAAAC
98802358 A
1 A
98802359 CTTTGAAACC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.48, C:0.12, G:0.12, T:0.28
Consensus pattern (42 bp):
AAGTTTAGAAACCTTCTAATAATGTAATACAAGTTGAAAAAC
Found at i:98807737 original size:62 final size:59
Alignment explanation
Indices: 98807648--98807781 Score: 198
Period size: 62 Copynumber: 2.2 Consensus size: 59
98807638 TTCAAAAATA
* * *
98807648 ATATTATTTTAAT-ATATTTAATATTAAATTTAATTTAATATTTATCTTATAGATAAATATT
1 ATATTAATTTAATAAGATTTAATATTAAATTTAATCTAATATTTATC-T-TA-ATAAATATT
*
98807709 CTATTAATTTAATAAGATTTAATATTAAATTTAATCTAATATTTATCTTAATAAATATT
1 ATATTAATTTAATAAGATTTAATATTAAATTTAATCTAATATTTATCTTAATAAATATT
98807768 ATATTAATTTAATA
1 ATATTAATTTAATA
98807782 TTAAAGTGAT
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
59 22 0.33
60 2 0.03
61 12 0.18
62 31 0.46
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.51
Consensus pattern (59 bp):
ATATTAATTTAATAAGATTTAATATTAAATTTAATCTAATATTTATCTTAATAAATATT
Found at i:98807920 original size:25 final size:24
Alignment explanation
Indices: 98807890--98807937 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
98807880 TTGTAGAGAG
*
98807890 AAAATTCTCTGAAGAAATTATTTCA
1 AAAATTCTCTAAAGAAATT-TTTCA
* *
98807915 AAAATTTTCTAAAGATATTTTTC
1 AAAATTCTCTAAAGAAATTTTTC
98807938 TTATTTGTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.42, C:0.10, G:0.06, T:0.42
Consensus pattern (24 bp):
AAAATTCTCTAAAGAAATTTTTCA
Found at i:98808770 original size:19 final size:21
Alignment explanation
Indices: 98808742--98808780 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
98808732 GAAAACGCTA
98808742 AAGAACAAAT-TT-AAATAAT
1 AAGAACAAATATTCAAATAAT
*
98808761 AAGAATAAATATTCAAATAA
1 AAGAACAAATATTCAAATAA
98808781 ATAAATATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 2 0.12
21 6 0.35
ACGTcount: A:0.64, C:0.05, G:0.05, T:0.26
Consensus pattern (21 bp):
AAGAACAAATATTCAAATAAT
Found at i:98811485 original size:45 final size:43
Alignment explanation
Indices: 98811400--98811504 Score: 104
Period size: 45 Copynumber: 2.4 Consensus size: 43
98811390 GAATGAATAG
* *
98811400 AAATAGAGAAATGGAAAACATTTAGAAATGATTATGGTTTTCCACA
1 AAAT-GAGAAAT-GAAAACATTTAGAAATGAATATAGTTTT-CACA
** * * *
98811446 AAATGGAGAAATGAAATTATTTGGAAATGAATGTAGTTTTCTCA
1 AAAT-GAGAAATGAAAACATTTAGAAATGAATATAGTTTTCACA
98811490 AAATG-GAAATGAAAA
1 AAATGAGAAATGAAAA
98811505 TGAGAAATGA
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
42 9 0.18
43 1 0.02
44 7 0.14
45 22 0.44
46 11 0.22
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.29
Consensus pattern (43 bp):
AAATGAGAAATGAAAACATTTAGAAATGAATATAGTTTTCACA
Found at i:98813798 original size:18 final size:18
Alignment explanation
Indices: 98813764--98813805 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
98813754 CACACATACT
*
98813764 ATTTCATAACCTCATATC
1 ATTTCATAACCTAATATC
98813782 ATTTCATATA-CTAATATC
1 ATTTCATA-ACCTAATATC
*
98813800 AATTCA
1 ATTTCA
98813806 CAAGCTCTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 20 0.95
19 1 0.05
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.40
Consensus pattern (18 bp):
ATTTCATAACCTAATATC
Found at i:98818333 original size:32 final size:29
Alignment explanation
Indices: 98818292--98818366 Score: 82
Period size: 28 Copynumber: 2.6 Consensus size: 29
98818282 TGTTTAAAAA
*
98818292 ATAATTTTTATAAAATTCTAAAATATATAAAT
1 ATAAATTTT-TAAAATTC-AAAATA-ATAAAT
*
98818324 ATAAA-TTTTAAAATTCAAAATAATATAT
1 ATAAATTTTTAAAATTCAAAATAATAAAT
*
98818352 ATAAA-TTGTAAAATT
1 ATAAATTTTTAAAATT
98818367 TTATAATTTA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
28 19 0.47
29 6 0.15
30 8 0.20
31 3 0.08
32 4 0.10
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (29 bp):
ATAAATTTTTAAAATTCAAAATAATAAAT
Found at i:98818363 original size:28 final size:30
Alignment explanation
Indices: 98818302--98818366 Score: 98
Period size: 28 Copynumber: 2.2 Consensus size: 30
98818292 ATAATTTTTA
*
98818302 TAAAATTCTAAAATATATAAATATAAATTT
1 TAAAATTCTAAAATATATAAATATAAATTG
*
98818332 TAAAATTC-AAAATA-ATATATATAAATTG
1 TAAAATTCTAAAATATATAAATATAAATTG
98818360 TAAAATT
1 TAAAATT
98818367 TTATAATTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
28 19 0.58
29 6 0.18
30 8 0.24
ACGTcount: A:0.57, C:0.03, G:0.02, T:0.38
Consensus pattern (30 bp):
TAAAATTCTAAAATATATAAATATAAATTG
Found at i:98818395 original size:29 final size:29
Alignment explanation
Indices: 98818362--98818433 Score: 74
Period size: 29 Copynumber: 2.4 Consensus size: 29
98818352 ATAAATTGTA
* * *
98818362 AAATTTTATAATTTAAAAAAAAGG-TATTT
1 AAATTTAAAAATTT-AAAAAAAGGATACTT
*
98818391 AAATTTAAAAATTTGAAAAAAGGATACTT
1 AAATTTAAAAATTTAAAAAAAGGATACTT
98818420 AAATTGTCAAAAAT
1 AAATT-T-AAAAAT
98818434 ATATAATTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
28 8 0.22
29 21 0.58
30 1 0.03
31 6 0.17
ACGTcount: A:0.54, C:0.03, G:0.08, T:0.35
Consensus pattern (29 bp):
AAATTTAAAAATTTAAAAAAAGGATACTT
Found at i:98818537 original size:16 final size:17
Alignment explanation
Indices: 98818508--98818541 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
98818498 TGTAAGAATT
98818508 TTTTTTAAAATTATATA
1 TTTTTTAAAATTATATA
*
98818525 TTTTTT-AATTTATATA
1 TTTTTTAAAATTATATA
98818541 T
1 T
98818542 ATTATTTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTTTTAAAATTATATA
Found at i:98818540 original size:18 final size:20
Alignment explanation
Indices: 98818519--98818555 Score: 60
Period size: 18 Copynumber: 1.9 Consensus size: 20
98818509 TTTTTAAAAT
98818519 TATATATT-TTTT-AATTTA
1 TATATATTATTTTGAATTTA
98818537 TATATATTATTTTGAATTT
1 TATATATTATTTTGAATTT
98818556 TTAAAATTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.47
19 4 0.24
20 5 0.29
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (20 bp):
TATATATTATTTTGAATTTA
Found at i:98818593 original size:15 final size:15
Alignment explanation
Indices: 98818554--98818596 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
98818544 TATTTTGAAT
* *
98818554 TTTTAAAATTTGTAC
1 TTTTAAAATTTTTAA
* *
98818569 TTATATAATTTTTAA
1 TTTTAAAATTTTTAA
98818584 TTTTAAAATTTTT
1 TTTTAAAATTTTT
98818597 TAAATTTTTT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (15 bp):
TTTTAAAATTTTTAA
Found at i:98818788 original size:23 final size:22
Alignment explanation
Indices: 98818762--98818811 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
98818752 ATGTATTTTT
*
98818762 TAATATTTAAATATTTAAAATTA
1 TAATATTTAAACA-TTAAAATTA
* *
98818785 TAATTTTTTAAACATTATAATTA
1 TAA-TATTTAAACATTAAAATTA
98818808 TAAT
1 TAAT
98818812 TTAATTTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
22 1 0.04
23 14 0.61
24 8 0.35
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (22 bp):
TAATATTTAAACATTAAAATTA
Found at i:98818803 original size:17 final size:16
Alignment explanation
Indices: 98818756--98818806 Score: 59
Period size: 15 Copynumber: 3.2 Consensus size: 16
98818746 AGTCAAATGT
*
98818756 ATTTTTTAATATT-TA
1 ATTTTTTAAAATTATA
* *
98818771 AATATTTAAAATTATA
1 ATTTTTTAAAATTATA
98818787 ATTTTTTAAACATTATA
1 ATTTTTTAAA-ATTATA
98818804 ATT
1 ATT
98818807 ATAATTTAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
15 10 0.34
16 10 0.34
17 9 0.31
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (16 bp):
ATTTTTTAAAATTATA
Found at i:98819525 original size:39 final size:38
Alignment explanation
Indices: 98819440--98819530 Score: 166
Period size: 38 Copynumber: 2.4 Consensus size: 38
98819430 ACCTAACTAT
98819440 GATTG-TTTTTTTTTAAATTGCTCACCAAACTAATCAA
1 GATTGTTTTTTTTTTAAATTGCTCACCAAACTAATCAA
98819477 GATTGTTTTTTTTTTAAATTGCTCACCAAACTAATCAA
1 GATTGTTTTTTTTTTAAATTGCTCACCAAACTAATCAA
98819515 GATTGTTTTTTCTTTT
1 GATTGTTTTTT-TTTT
98819531 GTCAAATTTA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
37 5 0.10
38 43 0.83
39 4 0.08
ACGTcount: A:0.27, C:0.14, G:0.09, T:0.49
Consensus pattern (38 bp):
GATTGTTTTTTTTTTAAATTGCTCACCAAACTAATCAA
Found at i:98819767 original size:23 final size:24
Alignment explanation
Indices: 98819725--98819772 Score: 80
Period size: 23 Copynumber: 2.0 Consensus size: 24
98819715 ATATAAATGC
*
98819725 ATAAATAATTTCAAAAAATATATA
1 ATAAAAAATTTCAAAAAATATATA
98819749 ATAAAAAATTT-AAAAAATATATA
1 ATAAAAAATTTCAAAAAATATATA
98819772 A
1 A
98819773 ACATAAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 13 0.57
24 10 0.43
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (24 bp):
ATAAAAAATTTCAAAAAATATATA
Found at i:98825085 original size:6 final size:6
Alignment explanation
Indices: 98825042--98825073 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
98825032 GTATTTTTAT
98825042 TATTAA T-TTAA TATTAA TATTAA TATTAA TAT
1 TATTAA TATTAA TATTAA TATTAA TATTAA TAT
98825074 AAAATTAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (6 bp):
TATTAA
Found at i:98825172 original size:25 final size:24
Alignment explanation
Indices: 98825130--98825176 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
98825120 TTATATATTT
98825130 ACAATTTTATATATTATTATTTTCA
1 ACAATTTTATATATTATT-TTTTCA
*
98825155 ACAATTTT-TTTATATATTTTTT
1 ACAATTTTATATAT-TATTTTTT
98825177 AAATTTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (24 bp):
ACAATTTTATATATTATTTTTTCA
Found at i:98825190 original size:23 final size:24
Alignment explanation
Indices: 98825115--98825196 Score: 63
Period size: 22 Copynumber: 3.7 Consensus size: 24
98825105 AATAATTACG
*
98825115 TATTCTTATATA-TTT--ACAATTT
1 TATTATTATATATTTTCAACAA-TT
98825137 TATATATTAT-TATTTTCAACAATT
1 TAT-TATTATATATTTTCAACAATT
**
98825161 T-TT-TTATATATTTTTTA-AATT
1 TATTATTATATATTTTCAACAATT
98825182 TATTATTATAT-TTTT
1 TATTATTATATATTTT
98825197 ATATATAAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 14
0.75 0.04 0.21
Matches are distributed among these distances:
21 9 0.18
22 19 0.38
23 15 0.30
24 3 0.06
25 4 0.08
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (24 bp):
TATTATTATATATTTTCAACAATT
Found at i:98825208 original size:27 final size:27
Alignment explanation
Indices: 98825177--98825229 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
98825167 TATATTTTTT
98825177 AAATTTATTAT-TATATTTT-TATATATA
1 AAATTT-TTATGT-TATTTTATATATATA
98825204 AAATTTTTATGTTATTTTATATATAT
1 AAATTTTTATGTTATTTTATATATAT
98825230 TTTTTAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 10 0.42
27 14 0.58
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (27 bp):
AAATTTTTATGTTATTTTATATATATA
Found at i:98827587 original size:33 final size:33
Alignment explanation
Indices: 98827545--98827612 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
98827535 TTACCAAGAA
98827545 TAGGTTCTGTCAGTCAAGTACTTTTTATATTTT
1 TAGGTTCTGTCAGTCAAGTACTTTTTATATTTT
98827578 TAGGTTCTGTCAGTCAAGTACTTTTTATATTTT
1 TAGGTTCTGTCAGTCAAGTACTTTTTATATTTT
98827611 TA
1 TA
98827613 TCATTTTTAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.22, C:0.12, G:0.15, T:0.51
Consensus pattern (33 bp):
TAGGTTCTGTCAGTCAAGTACTTTTTATATTTT
Found at i:98839448 original size:26 final size:26
Alignment explanation
Indices: 98839419--98839526 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
98839409 TGGTACAAAT
98839419 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
98839445 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
98839471 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
98839497 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
98839523 TGAT
1 TGAT
98839527 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:98843010 original size:8 final size:8
Alignment explanation
Indices: 98842997--98843030 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
98842987 TTCTTTTATT
98842997 TAATATAA
1 TAATATAA
98843005 TAATATAA
1 TAATATAA
* *
98843013 TAATGTTA
1 TAATATAA
98843021 TAATATAA
1 TAATATAA
98843029 TA
1 TA
98843031 TTATTTTCTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (8 bp):
TAATATAA
Found at i:98844829 original size:21 final size:18
Alignment explanation
Indices: 98844805--98844854 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 18
98844795 TTTAATTTTA
98844805 ATTTTTTTCTTTTTCTCTCTC
1 ATTTTTTTCTTTTT-T-TC-C
98844826 ATTTTTTTCTTTTTTTCC
1 ATTTTTTTCTTTTTTTCC
*
98844844 TTTTTTTTCTT
1 ATTTTTTTCTT
98844855 GCTTTTTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 11 0.39
19 2 0.07
20 1 0.04
21 14 0.50
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.78
Consensus pattern (18 bp):
ATTTTTTTCTTTTTTTCC
Found at i:98845754 original size:24 final size:23
Alignment explanation
Indices: 98845727--98845780 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 23
98845717 ATATTATTTT
98845727 TATTAATATTTTATACTATTA-AAA
1 TATTAATATTTT-TA-TATTATAAA
*
98845751 TATTCATATTTTTATATTATAAA
1 TATTAATATTTTTATATTATAAA
*
98845774 AATTAAT
1 TATTAAT
98845781 TACTAAACAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
22 5 0.19
23 10 0.38
24 11 0.42
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (23 bp):
TATTAATATTTTTATATTATAAA
Found at i:98845763 original size:25 final size:24
Alignment explanation
Indices: 98845727--98845776 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
98845717 ATATTATTTT
*
98845727 TATTAATATTTTATACTATTAAAA
1 TATTAATATTTTATACTATAAAAA
* *
98845751 TATTCATATTTTTATATTATAAAAA
1 TATTAATA-TTTTATACTATAAAAA
98845776 T
1 T
98845777 TAATTACTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 7 0.32
25 15 0.68
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (24 bp):
TATTAATATTTTATACTATAAAAA
Found at i:98846358 original size:20 final size:23
Alignment explanation
Indices: 98846312--98846363 Score: 74
Period size: 20 Copynumber: 2.4 Consensus size: 23
98846302 TTTTTGTATT
98846312 TATTTATATTTAATAATAAATAA
1 TATTTATATTTAATAATAAATAA
*
98846335 TATTTAT-TTTTA-AATAAA-AA
1 TATTTATATTTAATAATAAATAA
98846355 TATTTATAT
1 TATTTATAT
98846364 CATTTTTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
20 9 0.33
21 7 0.26
22 4 0.15
23 7 0.26
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
TATTTATATTTAATAATAAATAA
Found at i:98849265 original size:96 final size:96
Alignment explanation
Indices: 98849101--98849291 Score: 274
Period size: 96 Copynumber: 2.0 Consensus size: 96
98849091 TCCGAGGAAA
* * * * * * *
98849101 TCTGTTATCGACGGGAATGATCGATCAGATACGGAGCCCAGGAAACTTGGTTCGAACAAGGGAAA
1 TCTGTCATCGAAGGGAATGATAGAGCAGACAAGGAGCCCAAGAAACTTGGTTCGAACAAGGGAAA
98849166 AGCCGAAGCCAAGAGGGCAAAGAGGAGCAAG
66 AGCCGAAGCCAAGAGGGCAAAGAGGAGCAAG
* * * *
98849197 TCTGTCATCGAAGGGAATGATAGAGCAGACAATGAGCCCAAGAAGCTTGGTTCGAGCAAGGGTAA
1 TCTGTCATCGAAGGGAATGATAGAGCAGACAAGGAGCCCAAGAAACTTGGTTCGAACAAGGGAAA
*
98849262 AGCCGAAGCCAAGAGGGCTAAGAGGAGCAA
66 AGCCGAAGCCAAGAGGGCAAAGAGGAGCAA
98849292 AAAGAAGCGA
Statistics
Matches: 83, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
96 83 1.00
ACGTcount: A:0.36, C:0.18, G:0.32, T:0.14
Consensus pattern (96 bp):
TCTGTCATCGAAGGGAATGATAGAGCAGACAAGGAGCCCAAGAAACTTGGTTCGAACAAGGGAAA
AGCCGAAGCCAAGAGGGCAAAGAGGAGCAAG
Found at i:98851202 original size:26 final size:27
Alignment explanation
Indices: 98851148--98851203 Score: 87
Period size: 26 Copynumber: 2.1 Consensus size: 27
98851138 ACACTAAAAG
98851148 TGTTAACTTATAATATTTTTTTTAAAT
1 TGTTAACTTATAATATTTTTTTTAAAT
* *
98851175 TGTTAATTTATAAT-TTTTTTTTAGAT
1 TGTTAACTTATAATATTTTTTTTAAAT
98851201 TGT
1 TGT
98851204 ATAAAAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 14 0.52
27 13 0.48
ACGTcount: A:0.29, C:0.02, G:0.07, T:0.62
Consensus pattern (27 bp):
TGTTAACTTATAATATTTTTTTTAAAT
Found at i:98851213 original size:26 final size:26
Alignment explanation
Indices: 98851157--98851216 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
98851147 GTGTTAACTT
**
98851157 ATAATATTTTTTTTAAATTGTTAATTT
1 ATAAT-TTTTTTTTAAATTGTTAATAA
*
98851184 ATAATTTTTTTTTAGATTGTATAA-AA
1 ATAATTTTTTTTTAAATTGT-TAATAA
98851210 ATAATTT
1 ATAATTT
98851217 ATAATTCAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
26 21 0.72
27 8 0.28
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (26 bp):
ATAATTTTTTTTTAAATTGTTAATAA
Found at i:98854357 original size:15 final size:16
Alignment explanation
Indices: 98854337--98854366 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
98854327 TTTTGCTTCT
98854337 TCTTCCTTCA-CATCA
1 TCTTCCTTCATCATCA
98854352 TCTTCCTTCATCATC
1 TCTTCCTTCATCATC
98854367 TTAACTTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.17, C:0.40, G:0.00, T:0.43
Consensus pattern (16 bp):
TCTTCCTTCATCATCA
Found at i:98855249 original size:46 final size:46
Alignment explanation
Indices: 98855181--98855273 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 46
98855171 TTTCTTCCCT
98855181 CTAGGTTGGGGCAGGCTATTTCTTTCACATTGGAAATGCCAGACAC
1 CTAGGTTGGGGCAGGCTATTTCTTTCACATTGGAAATGCCAGACAC
*
98855227 CTAGGTTGGGGCAGGCTCTTTCTTTCACATTGGAAATGCCAGACAC
1 CTAGGTTGGGGCAGGCTATTTCTTTCACATTGGAAATGCCAGACAC
98855273 C
1 C
98855274 ACTATGGAAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.28
Consensus pattern (46 bp):
CTAGGTTGGGGCAGGCTATTTCTTTCACATTGGAAATGCCAGACAC
Found at i:98856354 original size:40 final size:40
Alignment explanation
Indices: 98856284--98856392 Score: 164
Period size: 40 Copynumber: 2.7 Consensus size: 40
98856274 TGATCCATAT
* * *
98856284 TTTACCCGAATAAAGTATGTATTAATAGAAAACTGTATAA
1 TTTAACCGGATAAAGTATGTATTAACAGAAAACTGTATAA
* *
98856324 TTTATCCGGATAAAGTATGTAATAACAGAAAACTGTATAA
1 TTTAACCGGATAAAGTATGTATTAACAGAAAACTGTATAA
*
98856364 TTTAACCGGATGAAGTATGTATTAACAGA
1 TTTAACCGGATAAAGTATGTATTAACAGA
98856393 TATACTTAAA
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 62 1.00
ACGTcount: A:0.43, C:0.10, G:0.16, T:0.31
Consensus pattern (40 bp):
TTTAACCGGATAAAGTATGTATTAACAGAAAACTGTATAA
Found at i:98856419 original size:18 final size:18
Alignment explanation
Indices: 98856396--98856430 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
98856386 TAACAGATAT
*
98856396 ACTTAAAATCTAGTTGGC
1 ACTTAAAATCTAATTGGC
98856414 ACTTAAAATCTAATTGG
1 ACTTAAAATCTAATTGG
98856431 ACTACCATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.34
Consensus pattern (18 bp):
ACTTAAAATCTAATTGGC
Found at i:98856970 original size:17 final size:17
Alignment explanation
Indices: 98856950--98856982 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
98856940 ATAATGAATG
*
98856950 TTATTAAATTATATTTT
1 TTATTAAAATATATTTT
98856967 TTATTAAAATATATTT
1 TTATTAAAATATATTT
98856983 AATAATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
TTATTAAAATATATTTT
Found at i:98858499 original size:18 final size:16
Alignment explanation
Indices: 98858463--98858501 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 16
98858453 ATTATTATTT
*
98858463 TTATTTTTTTATTTTA
1 TTATTTATTTATTTTA
98858479 TTATTTATTTACTTGTTA
1 TTATTTATTTA-TT-TTA
98858497 TTATT
1 TTATT
98858502 ACCATATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 10 0.50
17 2 0.10
18 8 0.40
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.74
Consensus pattern (16 bp):
TTATTTATTTATTTTA
Found at i:98858693 original size:3 final size:3
Alignment explanation
Indices: 98858687--98858713 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
98858677 TTATTAATAC
98858687 CAT CAT CAT CAT CAT CAT CAT CAT CAT
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT
98858714 GATTATTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
CAT
Found at i:98858721 original size:3 final size:3
Alignment explanation
Indices: 98858715--98858767 Score: 88
Period size: 3 Copynumber: 17.3 Consensus size: 3
98858705 CATCATCATG
*
98858715 ATT ATT ATT ATT ATT ATT ATT ATT ATTT ATT ATC ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT
98858761 ATT ATT A
1 ATT ATT A
98858768 AATTTTTTAC
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
3 44 0.94
4 3 0.06
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:98863067 original size:18 final size:17
Alignment explanation
Indices: 98863024--98863069 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
98863014 CCGTTATGTC
98863024 CGCGACCGCGA-C-AAA
1 CGCGACCGCGACCGAAA
*
98863039 CGTGA-CGCGACCGAAAA
1 CGCGACCGCGACCG-AAA
98863056 CGCGACCGCGACCG
1 CGCGACCGCGACCG
98863070 CAATTTAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
14 5 0.20
15 5 0.20
17 7 0.28
18 8 0.32
ACGTcount: A:0.28, C:0.39, G:0.30, T:0.02
Consensus pattern (17 bp):
CGCGACCGCGACCGAAA
Found at i:98863191 original size:16 final size:16
Alignment explanation
Indices: 98863170--98863225 Score: 85
Period size: 16 Copynumber: 3.5 Consensus size: 16
98863160 TAAATTACTT
98863170 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
98863186 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
* * *
98863202 ATTACAACCCTATTCA
1 ATTACAGCTCTATTCC
98863218 ATTACAGC
1 ATTACAGC
98863226 CAACCAAACA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.30, C:0.30, G:0.05, T:0.34
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:98867258 original size:17 final size:19
Alignment explanation
Indices: 98867236--98867281 Score: 62
Period size: 17 Copynumber: 2.6 Consensus size: 19
98867226 GACGTATAGA
98867236 AAGAAATAAAAAG-AGA-G
1 AAGAAATAAAAAGAAGAGG
*
98867253 AAGAAATAAATAGAAGAGG
1 AAGAAATAAAAAGAAGAGG
98867272 AA-AAATAAAA
1 AAGAAATAAAA
98867282 GCCGAAGGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 12 0.48
18 10 0.40
19 3 0.12
ACGTcount: A:0.72, C:0.00, G:0.20, T:0.09
Consensus pattern (19 bp):
AAGAAATAAAAAGAAGAGG
Found at i:98867263 original size:21 final size:19
Alignment explanation
Indices: 98867233--98867280 Score: 53
Period size: 21 Copynumber: 2.5 Consensus size: 19
98867223 ACGGACGTAT
*
98867233 AGAAAGAAATAAAAAGAGAGA
1 AGAAATAAAT-AAAAGAG-GA
*
98867254 AGAAATAAATAGAAGAGGA
1 AGAAATAAATAAAAGAGGA
98867273 A-AAATAAA
1 AGAAATAAA
98867281 AGCCGAAGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 7 0.28
19 3 0.12
20 6 0.24
21 9 0.36
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.08
Consensus pattern (19 bp):
AGAAATAAATAAAAGAGGA
Found at i:98867600 original size:30 final size:31
Alignment explanation
Indices: 98867548--98867613 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 31
98867538 AGGTTTCAAT
* *
98867548 TCAGTCACTAAACTTTTAAAAAA-TGATAAA
1 TCAGTCACTAAACTTATAAAAAAGTGACAAA
** *
98867578 TCAGTCACTAATGTTATCAAAAAGTGACAAA
1 TCAGTCACTAAACTTATAAAAAAGTGACAAA
98867609 TCAGT
1 TCAGT
98867614 TACCCACTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 19 0.63
31 11 0.37
ACGTcount: A:0.45, C:0.15, G:0.11, T:0.29
Consensus pattern (31 bp):
TCAGTCACTAAACTTATAAAAAAGTGACAAA
Found at i:98867610 original size:31 final size:30
Alignment explanation
Indices: 98867548--98867613 Score: 78
Period size: 31 Copynumber: 2.2 Consensus size: 30
98867538 AGGTTTCAAT
* *
98867548 TCAGTCACTAAACTTTTAAAAAATGATAAA
1 TCAGTCACTAAACTTTCAAAAAATGACAAA
** *
98867578 TCAGTCACTAATGTTATCAAAAAGTGACAAA
1 TCAGTCACTAAACTT-TCAAAAAATGACAAA
98867609 TCAGT
1 TCAGT
98867614 TACCCACTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 13 0.43
31 17 0.57
ACGTcount: A:0.45, C:0.15, G:0.11, T:0.29
Consensus pattern (30 bp):
TCAGTCACTAAACTTTCAAAAAATGACAAA
Found at i:98867770 original size:3 final size:3
Alignment explanation
Indices: 98867764--98867843 Score: 144
Period size: 3 Copynumber: 27.0 Consensus size: 3
98867754 CCCTAACAAC
98867764 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
*
98867812 AGA AGA AGA AGA AGA AGA AAA AGA AG- AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
98867844 GACTGTAAAA
Statistics
Matches: 74, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
2 2 0.03
3 72 0.97
ACGTcount: A:0.68, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:98868746 original size:17 final size:17
Alignment explanation
Indices: 98868724--98868758 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
98868714 CTTTCTATTT
98868724 TTTTTCTCTTCTTCTTC
1 TTTTTCTCTTCTTCTTC
*
98868741 TTTTTCTTTTCTTCTTC
1 TTTTTCTCTTCTTCTTC
98868758 T
1 T
98868759 ACTAAACCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTTCTCTTCTTCTTC
Found at i:98868753 original size:20 final size:20
Alignment explanation
Indices: 98868721--98868758 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
98868711 CAACTTTCTA
98868721 TTTTTTTTCTCTTCTTCTTC
1 TTTTTTTTCTCTTCTTCTTC
98868741 TTTTTCTTT-TCTTCTTCT
1 TTTTT-TTTCTCTTCTTCT
98868759 ACTAAACCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 14 0.82
21 3 0.18
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (20 bp):
TTTTTTTTCTCTTCTTCTTC
Found at i:98869307 original size:20 final size:20
Alignment explanation
Indices: 98869282--98869321 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
98869272 ATTATTTAAG
98869282 GATATTTTAGTCTTTTCATT
1 GATATTTTAGTCTTTTCATT
98869302 GATATTTTAGTCTTTTCATT
1 GATATTTTAGTCTTTTCATT
98869322 TCAACAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.10, G:0.10, T:0.60
Consensus pattern (20 bp):
GATATTTTAGTCTTTTCATT
Found at i:98871893 original size:47 final size:47
Alignment explanation
Indices: 98871830--98872288 Score: 821
Period size: 47 Copynumber: 9.7 Consensus size: 47
98871820 ATGATAGTAT
98871830 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
98871877 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
98871924 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
98871971 GGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
98872018 TGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
98872065 TGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
98872112 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT-A
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
*
98872160 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
98872207 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
98872256 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
98872289 CCCGAAGGGT
Statistics
Matches: 401, Mismatches: 5, Indels: 9
0.97 0.01 0.02
Matches are distributed among these distances:
46 12 0.03
47 297 0.74
48 34 0.08
49 54 0.13
50 4 0.01
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.31
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:98872037 original size:22 final size:23
Alignment explanation
Indices: 98872009--98872089 Score: 67
Period size: 22 Copynumber: 3.5 Consensus size: 23
98871999 AAGTGTATAT
98872009 ATGTGAT-AATGCCTAATGGCCG
1 ATGTGATGAATGCCTAATGGCCG
*** ****
98872031 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGCCTAA-TG-GCCG
98872056 ATGTGAT-AATGCCTAATGGCCG
1 ATGTGATGAATGCCTAATGGCCG
98872078 ATGTGATGAATG
1 ATGTGATGAATG
98872090 TGAAAGTGTA
Statistics
Matches: 41, Mismatches: 14, Indels: 7
0.66 0.23 0.11
Matches are distributed among these distances:
22 14 0.34
23 12 0.29
24 8 0.20
25 7 0.17
ACGTcount: A:0.31, C:0.10, G:0.28, T:0.31
Consensus pattern (23 bp):
ATGTGATGAATGCCTAATGGCCG
Found at i:98872462 original size:37 final size:36
Alignment explanation
Indices: 98872406--98872483 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 36
98872396 CCGAGCTCTA
* * *
98872406 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCC-GGT
*
98872443 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGT
98872479 AAGAC
1 AAGAC
98872484 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 8 0.22
37 29 0.78
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (36 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGT
Found at i:98891399 original size:43 final size:42
Alignment explanation
Indices: 98891333--98891420 Score: 131
Period size: 43 Copynumber: 2.1 Consensus size: 42
98891323 TTAGTGAGAT
*
98891333 ATGTGGCATCCAAGCTCGTTGAGTGGTTCGAGTTCATTATGG
1 ATGTGGCATCCAAGCTCGTTGAGTGATTCGAGTTCATTATGG
* * *
98891375 ATGTGAGCATCCGAGCTTGTTGAGTGATTCGAGTTCATTGTGG
1 ATGTG-GCATCCAAGCTCGTTGAGTGATTCGAGTTCATTATGG
98891418 ATG
1 ATG
98891421 CGAGGCTTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
42 5 0.12
43 36 0.88
ACGTcount: A:0.19, C:0.15, G:0.32, T:0.34
Consensus pattern (42 bp):
ATGTGGCATCCAAGCTCGTTGAGTGATTCGAGTTCATTATGG
Found at i:98901221 original size:24 final size:25
Alignment explanation
Indices: 98901178--98901240 Score: 65
Period size: 24 Copynumber: 2.4 Consensus size: 25
98901168 TTCTCCTAAA
* *
98901178 TTTCAATTTAATTTAATTATT-TATT
1 TTTCAAATT-ATTGAATTATTATATT
98901203 TTTCAAATTATTGAATTATTAATATT
1 TTTCAAATTATTGAATTATT-ATATT
98901229 TTATGCAAATTA
1 TT-T-CAAATTA
98901241 AATTTTTGAG
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
24 10 0.31
25 8 0.25
26 6 0.19
27 1 0.03
28 7 0.22
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.56
Consensus pattern (25 bp):
TTTCAAATTATTGAATTATTATATT
Found at i:98904763 original size:20 final size:22
Alignment explanation
Indices: 98904734--98904774 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
98904724 GTTTATAAGC
*
98904734 AATTAGATG-TACTTA-ATATT
1 AATTAAATGTTACTTATATATT
98904754 AATTAAATGTTACTTATATAT
1 AATTAAATGTTACTTATATAT
98904775 GCTGAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 8 0.44
21 6 0.33
22 4 0.22
ACGTcount: A:0.41, C:0.05, G:0.07, T:0.46
Consensus pattern (22 bp):
AATTAAATGTTACTTATATATT
Found at i:98909282 original size:2 final size:2
Alignment explanation
Indices: 98909275--98909311 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
98909265 CATTCAAAGG
98909275 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA C
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA C
98909312 TTTCATCATG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.51, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:98912954 original size:14 final size:15
Alignment explanation
Indices: 98912926--98912972 Score: 53
Period size: 14 Copynumber: 3.1 Consensus size: 15
98912916 AATATATATT
*
98912926 TATTAATAATAAATTA
1 TATT-ATAATTAATTA
98912942 TATTA-AATTAATT-
1 TATTATAATTAATTA
98912955 TATTATAATTATATTA
1 TATTATAATTA-ATTA
98912971 TA
1 TA
98912973 AGATATTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
13 5 0.19
14 12 0.44
15 4 0.15
16 6 0.22
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
TATTATAATTAATTA
Found at i:98915067 original size:46 final size:46
Alignment explanation
Indices: 98915000--98915365 Score: 527
Period size: 46 Copynumber: 8.0 Consensus size: 46
98914990 GCTCTTTGAA
*
98915000 ATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
98915046 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * *
98915092 ATGAAATGTCTAAGACCATGGTTGAAAGATACCATGGAAACATGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
**
98915138 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** *
98915184 GGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * * *
98915230 GGGAAATGAATAAGACCATGGTTGAAAGATACTATGGCAGCGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
98915276 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * *
98915322 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
98915366 TCAAAGATAA
Statistics
Matches: 292, Mismatches: 27, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.00
46 291 1.00
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:98916935 original size:222 final size:216
Alignment explanation
Indices: 98916499--98916936 Score: 601
Period size: 222 Copynumber: 2.0 Consensus size: 216
98916489 TGGTGAATTG
* * **
98916499 GGTATACGACTTTTGCAGTTTGTAACGTCATTCATAATAGTGGAATTTATAGCCCAAGAAATGGG
1 GGTATACGACTTGTGCAGTATGTAACGTCATTCATAATAGTGGAATCCATAGCCCAAGAAATGGG
* * * *
98916564 TAAATGATATCCTCTCATTAGCATTACATGGTTGATGAAAAGTAAATATGGCCACTGGTCGTTTG
66 T--ATGATATCCTCTCATTAGCATTACATGGTTGATGAAAAGTAAACATGGCCACGGGTCGCTCG
* *
98916629 TTTATGTGTTGAATTACTCTTTGATAGTAATTGACTTTTCATGAAGGAAGATGTACTAGATATCA
129 TTTATGTGTTGAATTACTATTTAATAGTAATTGACTTTTCATGAAGGAAGATGTACTAGATATCA
98916694 TGAGATAAAATAAGATCATATTT
194 TGAGATAAAATAAGATCATATTT
*
98916717 GGTATACGACTTGTGCAGTATGTAGCGTCATTCATAATAGTGGAATCCATAGCCCAAGAAATGGG
1 GGTATACGACTTGTGCAGTATGTAACGTCATTCATAATAGTGGAATCCATAGCCCAAGAAATGGG
* * *
98916782 T-T-ATATCTTCTTATTGGCATTACATGGTTGATGAAAAGTAAACATGGCCACGGGTCGCTCGTT
66 TATGATATCCTCTCATTAGCATTACATGGTTGATGAAAAGTAAACATGGCCACGGGTCGCTCGTT
* * *
98916845 TATGTGATGAATGACCTGATTATTATTTAATAGTAATTGACTTTTCATGAAGGAAGATGTATTGG
131 TATGTG-T---TGA----ATTACTATTTAATAGTAATTGACTTTTCATGAAGGAAGATGTACTAG
* *
98916910 TTATCATGAGATAAAATAGGATCATAT
188 ATATCATGAGATAAAATAAGATCATAT
98916937 AGGGAGAACG
Statistics
Matches: 193, Mismatches: 19, Indels: 12
0.86 0.08 0.05
Matches are distributed among these distances:
214 60 0.31
215 2 0.01
218 64 0.33
222 67 0.35
ACGTcount: A:0.32, C:0.12, G:0.21, T:0.35
Consensus pattern (216 bp):
GGTATACGACTTGTGCAGTATGTAACGTCATTCATAATAGTGGAATCCATAGCCCAAGAAATGGG
TATGATATCCTCTCATTAGCATTACATGGTTGATGAAAAGTAAACATGGCCACGGGTCGCTCGTT
TATGTGTTGAATTACTATTTAATAGTAATTGACTTTTCATGAAGGAAGATGTACTAGATATCATG
AGATAAAATAAGATCATATTT
Found at i:98919119 original size:25 final size:23
Alignment explanation
Indices: 98919076--98919147 Score: 67
Period size: 25 Copynumber: 3.0 Consensus size: 23
98919066 TTAATATTTT
98919076 TATATACAATA-AAATATAAATAA
1 TATATACAATATAAA-ATAAATAA
98919099 TATATACACCATATAAAATAATATAA
1 TATATACA--ATATAAAATAA-ATAA
* *
98919125 TAATATATAATATAATA-AAATAA
1 T-ATATACAATATAAAATAAATAA
98919148 ATGGATTTCC
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
23 12 0.29
24 2 0.05
25 14 0.33
26 8 0.19
27 6 0.14
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (23 bp):
TATATACAATATAAAATAAATAA
Found at i:98919128 original size:8 final size:8
Alignment explanation
Indices: 98919115--98919147 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
98919105 CACCATATAA
98919115 AATAATAT
1 AATAATAT
98919123 AATAATAT
1 AATAATAT
98919131 -ATAATAT
1 AATAATAT
*
98919138 AATAAAAT
1 AATAATAT
98919146 AA
1 AA
98919148 ATGGATTTCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
7 7 0.30
8 16 0.70
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (8 bp):
AATAATAT
Found at i:98919132 original size:20 final size:20
Alignment explanation
Indices: 98919083--98919148 Score: 64
Period size: 20 Copynumber: 3.3 Consensus size: 20
98919073 TTTTATATAC
98919083 AATAAAATAT-AAATAATAT
1 AATAAAATATAAAATAATAT
*
98919102 -ATACACCATATAAAATAATAT
1 AATA-A-AATATAAAATAATAT
* * *
98919123 AATAATATATAATATAATAA
1 AATAAAATATAAAATAATAT
98919143 AATAAA
1 AATAAA
98919149 TGGATTTCCA
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
18 3 0.08
19 1 0.03
20 21 0.55
21 10 0.26
22 3 0.08
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (20 bp):
AATAAAATATAAAATAATAT
Found at i:98919259 original size:28 final size:28
Alignment explanation
Indices: 98919199--98919259 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
98919189 ATATAATTTT
** *
98919199 TAATATAAAATAATAATGAGTATTAATA
1 TAATATAAAATAATAATGACAATAAATA
*
98919227 TAATATAAAATAATAATATACAATAAATA
1 TAATATAAAATAATAAT-GACAATAAATA
98919256 -AATA
1 TAATA
98919260 ATAATATTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 21 0.75
29 7 0.25
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (28 bp):
TAATATAAAATAATAATGACAATAAATA
Found at i:98919260 original size:21 final size:22
Alignment explanation
Indices: 98919206--98919281 Score: 75
Period size: 23 Copynumber: 3.4 Consensus size: 22
98919196 TTTTAATATA
* *
98919206 AAAT-AATAATGAGTATTAATAT
1 AAATAAATAAT-AATATTAAAAT
*
98919228 AATATAAAATAATAATA-TACAAT
1 AA-AT-AAATAATAATATTAAAAT
98919251 AAATAAATAATAATATTTAAAAT
1 AAATAAATAATAATA-TTAAAAT
98919274 AAATAAAT
1 AAATAAAT
98919282 TTAAAAGTGT
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
21 11 0.24
22 4 0.09
23 21 0.47
24 3 0.07
25 6 0.13
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (22 bp):
AAATAAATAATAATATTAAAAT
Found at i:98919273 original size:15 final size:15
Alignment explanation
Indices: 98919255--98919287 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
98919245 TACAATAAAT
98919255 AAAT-AATAATATTTA
1 AAATAAATAA-ATTTA
98919270 AAATAAATAAATTTA
1 AAATAAATAAATTTA
98919285 AAA
1 AAA
98919288 GTGTAAGAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
AAATAAATAAATTTA
Found at i:98923065 original size:11 final size:11
Alignment explanation
Indices: 98923049--98923075 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
98923039 CAGACCATGC
98923049 AATAATATTAA
1 AATAATATTAA
98923060 AATAATATTAA
1 AATAATATTAA
98923071 AATAA
1 AATAA
98923076 AATTTCTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (11 bp):
AATAATATTAA
Found at i:98930888 original size:14 final size:14
Alignment explanation
Indices: 98930837--98930900 Score: 51
Period size: 14 Copynumber: 4.6 Consensus size: 14
98930827 TTATATAATT
*
98930837 TATATATTATAAAA
1 TATATATTTTAAAA
*
98930851 -ATAAAATTTTAGAAA
1 TAT-ATATTTTA-AAA
* * *
98930866 TTTAT-TTTTTAAT
1 TATATATTTTAAAA
98930879 TATATATTTTAAAA
1 TATATATTTTAAAA
98930893 TATATATT
1 TATATATT
98930901 CAGAATACGT
Statistics
Matches: 37, Mismatches: 9, Indels: 8
0.69 0.17 0.15
Matches are distributed among these distances:
13 8 0.22
14 24 0.65
15 4 0.11
16 1 0.03
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (14 bp):
TATATATTTTAAAA
Found at i:98931061 original size:7 final size:8
Alignment explanation
Indices: 98931042--98931066 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
98931032 TAAAATTTTA
98931042 AAAAAATT
1 AAAAAATT
98931050 AAAAAATT
1 AAAAAATT
98931058 AAAAAATT
1 AAAAAATT
98931066 A
1 A
98931067 TTTTATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AAAAAATT
Found at i:98959751 original size:13 final size:13
Alignment explanation
Indices: 98959730--98959762 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
98959720 TTTATTTAAA
*
98959730 TTAGTTAATTAGT
1 TTAGATAATTAGT
98959743 TTAGATAATTAGT
1 TTAGATAATTAGT
98959756 TTA-ATAA
1 TTAGATAA
98959763 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:98965019 original size:5 final size:5
Alignment explanation
Indices: 98964998--98965081 Score: 64
Period size: 5 Copynumber: 15.6 Consensus size: 5
98964988 TTTTTAATCA
*
98964998 TTTAT TCTTATT TTTAT TTTAT TTTAT TTTATT TTTATT TTTCT TTTGATT
1 TTTAT T-TTA-T TTTAT TTTAT TTTAT TTTA-T TTTA-T TTTAT TTT-A-T
*
98965049 TTTAT TTTCAT TTCAAT TTTA- -TTAT TTTAT TTT
1 TTTAT TTT-AT TT-TAT TTTAT TTTAT TTTAT TTT
98965082 GAAAGACATA
Statistics
Matches: 66, Mismatches: 4, Indels: 18
0.75 0.05 0.20
Matches are distributed among these distances:
3 3 0.05
5 32 0.48
6 25 0.38
7 6 0.09
ACGTcount: A:0.18, C:0.05, G:0.01, T:0.76
Consensus pattern (5 bp):
TTTAT
Found at i:98965051 original size:7 final size:6
Alignment explanation
Indices: 98964998--98965061 Score: 71
Period size: 6 Copynumber: 11.2 Consensus size: 6
98964988 TTTTTAATCA
* *
98964998 TTTATT CTTATT TTTA-T TTTA-T TTTA-T TTTATT TTTATT TTTCTT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
* *
98965043 TTGATT TTTATT TTCATT T
1 TTTATT TTTATT TTTATT T
98965062 CAATTTTATT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
5 15 0.30
6 35 0.70
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.78
Consensus pattern (6 bp):
TTTATT
Found at i:98968003 original size:13 final size:13
Alignment explanation
Indices: 98967987--98968019 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
98967977 TTTAATTAAA
*
98967987 TTAGTTAATTAGT
1 TTAGATAATTAGT
98968000 TTAGATAATTAGT
1 TTAGATAATTAGT
98968013 TTA-ATAA
1 TTAGATAA
98968020 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:98971081 original size:38 final size:38
Alignment explanation
Indices: 98971037--98971133 Score: 122
Period size: 38 Copynumber: 2.6 Consensus size: 38
98971027 ATTCGAATTA
* * **
98971037 GGTGTTATTCAAGCTTAGTGCCTAGCTGGATTCGTGGT
1 GGTGTTATTCAAGCTTAATGCCTAGCAGGATTCGTGCC
* * *
98971075 GGTGTTATTCAGGCTTAATGCCTAGCAGGCTTTGTGCC
1 GGTGTTATTCAAGCTTAATGCCTAGCAGGATTCGTGCC
*
98971113 AGTGTTATTCAAGCTTAATGC
1 GGTGTTATTCAAGCTTAATGC
98971134 TGGTGTTATT
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 50 1.00
ACGTcount: A:0.19, C:0.18, G:0.28, T:0.36
Consensus pattern (38 bp):
GGTGTTATTCAAGCTTAATGCCTAGCAGGATTCGTGCC
Found at i:98971139 original size:22 final size:22
Alignment explanation
Indices: 98971114--98971155 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
98971104 CTTTGTGCCA
98971114 GTGTTATTCAAGCTTAATGCTG
1 GTGTTATTCAAGCTTAATGCTG
98971136 GTGTTATTCAAGCTTAATGC
1 GTGTTATTCAAGCTTAATGC
98971156 CTAGCAAGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.24, C:0.14, G:0.21, T:0.40
Consensus pattern (22 bp):
GTGTTATTCAAGCTTAATGCTG
Found at i:98971216 original size:98 final size:98
Alignment explanation
Indices: 98971037--98971219 Score: 231
Period size: 98 Copynumber: 1.9 Consensus size: 98
98971027 ATTCGAATTA
* ** ** *
98971037 GGTGTTATTCAAGCTTAGTGCCTAGCTGGATTCGTGGTGGTGTTATTCAGGCTTAATGCCTAGCA
1 GGTGTTATTCAAGCTTAATGCCTAGCAAGATTCGTGCCGATGTTATTCAGGCTTAATGCCTAGCA
* *
98971102 GGCTTTGTGCCAGTGTTATTCAAGCTTAATGCT
66 GGCCTAGTGCCAGTGTTATTCAAGCTTAATGCT
* * * * *
98971135 GGTGTTATTCAAGCTTAATGCCTAGCAAGCTTCGTGCCGATGTTTTTTAGGCTTAGTGCCTAGTA
1 GGTGTTATTCAAGCTTAATGCCTAGCAAGATTCGTGCCGATGTTATTCAGGCTTAATGCCTAGCA
**
98971200 GGCCTAGTGCTGGTGTTATT
66 GGCCTAGTGCCAGTGTTATT
98971220 TAAGTTTAGC
Statistics
Matches: 70, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
98 70 1.00
ACGTcount: A:0.18, C:0.17, G:0.27, T:0.37
Consensus pattern (98 bp):
GGTGTTATTCAAGCTTAATGCCTAGCAAGATTCGTGCCGATGTTATTCAGGCTTAATGCCTAGCA
GGCCTAGTGCCAGTGTTATTCAAGCTTAATGCT
Found at i:98982045 original size:21 final size:22
Alignment explanation
Indices: 98982003--98982045 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
98981993 TTTCATTTTC
* * *
98982003 TTTCATGTTCAAGTTTTGTTTA
1 TTTCATGTACAAGATTTCTTTA
98982025 TTTCAT-TACAAGATTTCTTTA
1 TTTCATGTACAAGATTTCTTTA
98982046 CTCCATTTGA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.23, C:0.12, G:0.09, T:0.56
Consensus pattern (22 bp):
TTTCATGTACAAGATTTCTTTA
Found at i:98982210 original size:73 final size:73
Alignment explanation
Indices: 98982087--98982224 Score: 249
Period size: 73 Copynumber: 1.9 Consensus size: 73
98982077 ATGGTTAGGA
* *
98982087 TAGGTGGAATACTCATGCTTTTTTCAAATATTCTAACTCAATCCTTATACTTTTCAAATGCTTCT
1 TAGGTGGAATACTCATGCCTTTTTCAAATATTCTAACTCAATCCTCATACTTTTCAAATGCTTCT
98982152 AGTCAGGT
66 AGTCAGGT
*
98982160 TAGGTGGAATACTCATGCCTTTTTCAAATATTCTAACTCAGTCCTCATACTTTTCAAATGCTTCT
1 TAGGTGGAATACTCATGCCTTTTTCAAATATTCTAACTCAATCCTCATACTTTTCAAATGCTTCT
98982225 TATTATTTGC
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
73 62 1.00
ACGTcount: A:0.27, C:0.21, G:0.12, T:0.41
Consensus pattern (73 bp):
TAGGTGGAATACTCATGCCTTTTTCAAATATTCTAACTCAATCCTCATACTTTTCAAATGCTTCT
AGTCAGGT
Found at i:98990814 original size:31 final size:31
Alignment explanation
Indices: 98990770--98990843 Score: 121
Period size: 31 Copynumber: 2.4 Consensus size: 31
98990760 GTCCCAAGTC
*
98990770 ACACAGGCGTGTGAGTCCACACGGCCCATCT
1 ACACGGGCGTGTGAGTCCACACGGCCCATCT
* *
98990801 ACACGGGTGTGTGAGTCCACACGGCCCTTCT
1 ACACGGGCGTGTGAGTCCACACGGCCCATCT
98990832 ACACGGGCGTGT
1 ACACGGGCGTGT
98990844 AACACTTTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.19, C:0.32, G:0.30, T:0.19
Consensus pattern (31 bp):
ACACGGGCGTGTGAGTCCACACGGCCCATCT
Found at i:98992110 original size:48 final size:47
Alignment explanation
Indices: 98991980--98992150 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 47
98991970 ACATCTTGTA
* *
98991980 GCCGATGCATGTCCTAGACATGTCTTACACTGGCT-TACATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTACATCTCAAG
* *
98992026 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTACATCTCAAG
* * * *
98992072 GCCGATGCTATGTCCCAAATATGGTCTTACACTGGCTCTTATAATGT---G
1 GCCGATGC-ATGTCCCAGACAT-GTCTTACACTGGCTC-TA-CATCTCAAG
98992120 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
98992151 AGCACACAAT
Statistics
Matches: 107, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
46 58 0.54
47 23 0.21
48 22 0.21
49 1 0.01
51 3 0.03
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTACATCTCAAG
Found at i:98999013 original size:50 final size:48
Alignment explanation
Indices: 98998938--98999164 Score: 209
Period size: 46 Copynumber: 4.8 Consensus size: 48
98998928 TGGGGTATGG
* * *
98998938 TGCCGATGCCATGTCGCAGACATGGTCTTACACAAGCTCTAGCATATCTA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCT--CATATCTA
* * * *
98998988 TGCCGATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCTCGTA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC-TA
* * * * *
98999035 -GCTAATG-CATGTCCCAGACAT-GTCTTACACTAGCCCTCGTCTCAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTA
* * * *
98999080 TGCCAATGCCATGTTCCAGACATGATCTTACACTAGCTCTCATA-ATG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTA
*
98999127 TGTCCAATG-CATGTCCCAAACAT-GTCTTACACTAGCTC
1 TG-CCAATGCCATGTCCCAGACATGGTCTTACACTAGCTC
98999165 ACAATAGCTC
Statistics
Matches: 147, Mismatches: 23, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
44 10 0.07
45 16 0.11
46 36 0.24
47 29 0.20
48 23 0.16
49 1 0.01
50 32 0.22
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (48 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTA
Found at i:98999109 original size:92 final size:94
Alignment explanation
Indices: 98998987--98999162 Score: 234
Period size: 94 Copynumber: 1.9 Consensus size: 94
98998977 TAGCATATCT
* * * *
98998987 ATGCCGATGCCATGTCCCAGACATGGTCTTACACT-G-ACACAT-CTCGTAG-CTAATGCATGTC
1 ATGCCAATGCCATGTCCCAGACATGATCTTACACTAGCACACATAAT-GT-GTCCAATGCATGTC
*
98999048 CCAGACATGTCTTACACTAGCCCTCGTCTCA
64 CCAAACATGTCTTACACTAGCCCTCGTCTCA
* * *
98999079 ATGCCAATGCCATGTTCCAGACATGATCTTACACTAGCTCTCATAATGTGTCCAATGCATGTCCC
1 ATGCCAATGCCATGTCCCAGACATGATCTTACACTAGCACACATAATGTGTCCAATGCATGTCCC
98999144 AAACATGTCTTACACTAGC
66 AAACATGTCTTACACTAGC
98999163 TCACAATAGC
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
92 32 0.44
93 2 0.03
94 37 0.51
95 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (94 bp):
ATGCCAATGCCATGTCCCAGACATGATCTTACACTAGCACACATAATGTGTCCAATGCATGTCCC
AAACATGTCTTACACTAGCCCTCGTCTCA
Found at i:99006393 original size:55 final size:54
Alignment explanation
Indices: 99006264--99006460 Score: 245
Period size: 54 Copynumber: 3.6 Consensus size: 54
99006254 TTGGTAAGAT
* * *
99006264 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * * * *
99006318 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTAATGAGTTACTATAAGCC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * *
99006373 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
99006426 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
99006461 ATGGTAAGTT
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
52 4 0.03
53 32 0.26
54 41 0.34
55 41 0.34
56 4 0.03
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:99006490 original size:108 final size:109
Alignment explanation
Indices: 99006272--99006495 Score: 292
Period size: 108 Copynumber: 2.1 Consensus size: 109
99006262 ATAAGGATAT
* *
99006272 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
* * * * *
99006337 ATGTCAAGACATGGCATTAATGAGTTACTATAAGCCAAAGGTCC
66 ATGTCAAGACATGGCAATAATAAGTTACAAAAAGCAAAAGGTCC
* * *
99006381 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCACGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
**
99006445 ATGTCAAGACATGGCAATGGTAAGTT-CAAAAATG-AAAAGGTTCC
66 ATGTCAAGACATGGCAATAATAAGTTACAAAAA-GCAAAAGG-TCC
*
99006489 CAAGTAA
1 CATGTAA
99006496 TCCAAAGAGT
Statistics
Matches: 100, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
107 9 0.09
108 55 0.55
109 36 0.36
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.21
Consensus pattern (109 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
ATGTCAAGACATGGCAATAATAAGTTACAAAAAGCAAAAGGTCC
Found at i:99015871 original size:46 final size:46
Alignment explanation
Indices: 99015813--99016225 Score: 673
Period size: 46 Copynumber: 9.0 Consensus size: 46
99015803 TTTCTGTCAT
* *
99015813 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
**
99015859 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCTG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
** *
99015905 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
* *
99015951 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
*
99015997 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
** *
99016043 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
* *
99016089 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
99016135 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
**
99016181 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCA
99016226 GAGAGCACAC
Statistics
Matches: 341, Mismatches: 26, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 341 1.00
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
Found at i:99016017 original size:138 final size:138
Alignment explanation
Indices: 99015813--99016226 Score: 810
Period size: 138 Copynumber: 3.0 Consensus size: 138
99015803 TTTCTGTCAT
99015813 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCA
*
99015878 ACCATGGTCTTATTCATTTCATATCTGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
66 ACCATGGTCTTATTCATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
99015943 CATATCAG
131 CATATCAG
99015951 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCA
99016016 ACCATGGTCTTATTCATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
66 ACCATGGTCTTATTCATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
99016081 CATATCAG
131 CATATCAG
99016089 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCA
*
99016154 ACCATGGTCTTATTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
66 ACCATGGTCTTATTCATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
99016219 CATATCAG
131 CATATCAG
99016227 AGAGCACACT
Statistics
Matches: 274, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
138 274 1.00
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (138 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCA
ACCATGGTCTTATTCATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTT
CATATCAG
Found at i:99018272 original size:16 final size:16
Alignment explanation
Indices: 99018253--99018291 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
99018243 AATTTTTCCC
*
99018253 TTTTTCCTTCTTTCTT
1 TTTTTCCTTCCTTCTT
99018269 TTTTTCCTTCCTTCTT
1 TTTTTCCTTCCTTCTT
*
99018285 TCTTTCC
1 TTTTTCC
99018292 CCTGCTCTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTTTCCTTCCTTCTT
Found at i:99018351 original size:16 final size:17
Alignment explanation
Indices: 99018320--99018365 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
99018310 TCATCCTTTC
*
99018320 TTTCTTTTTCTATTCTT
1 TTTCTTTTTATATTCTT
99018337 TTTCTTTTTAT-TTCTT
1 TTTCTTTTTATATTCTT
* *
99018353 TTACTTTATATAT
1 TTTCTTTTTATAT
99018366 ATATTATAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 14 0.56
17 11 0.44
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTCTTTTTATATTCTT
Found at i:99018354 original size:10 final size:10
Alignment explanation
Indices: 99018316--99018353 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
99018306 CGTTTCATCC
99018316 TTTCTTTCTT
1 TTTCTTTCTT
99018326 TTTCTATTCTT
1 TTTCT-TTCTT
99018337 TTTCTTT-TT
1 TTTCTTTCTT
99018346 ATTTCTTT
1 -TTTCTTT
99018354 TACTTTATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 2 0.08
10 14 0.54
11 10 0.38
ACGTcount: A:0.05, C:0.16, G:0.00, T:0.79
Consensus pattern (10 bp):
TTTCTTTCTT
Found at i:99019921 original size:41 final size:41
Alignment explanation
Indices: 99019811--99019958 Score: 122
Period size: 41 Copynumber: 3.6 Consensus size: 41
99019801 ACTGGAGTGT
** * * * * *
99019811 AAACAGGGGCGCGTATGTGCAATTCA-AGGTACCGAAGTCC
1 AAACAGGGGCAAGTATCTACAATTCAGGGGTATCGAAGTAC
* * *
99019851 AAATAGGGGCACA-TATGTGA-AATTCAGGGGTATCGAATTAC
1 AAACAGGGGCA-AGTATCT-ACAATTCAGGGGTATCGAAGTAC
*
99019892 AAACAGGGGCAAGTATCTACAATTTAGGGGTATCGAAGTAC
1 AAACAGGGGCAAGTATCTACAATTCAGGGGTATCGAAGTAC
* * * *
99019933 GAACAGGGGCATGTATGTGCAATTCA
1 AAACAGGGGCAAGTATCTACAATTCA
99019959 TAGAATAATT
Statistics
Matches: 86, Mismatches: 17, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
40 22 0.26
41 64 0.74
ACGTcount: A:0.34, C:0.16, G:0.28, T:0.22
Consensus pattern (41 bp):
AAACAGGGGCAAGTATCTACAATTCAGGGGTATCGAAGTAC
Found at i:99030675 original size:6 final size:6
Alignment explanation
Indices: 99030664--99030691 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
99030654 GGTTTTCTCC
99030664 AAAATG AAAATG AAAATG AAAATG AAAA
1 AAAATG AAAATG AAAATG AAAATG AAAA
99030692 ATTTGTCCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (6 bp):
AAAATG
Found at i:99031226 original size:120 final size:120
Alignment explanation
Indices: 99031029--99031255 Score: 355
Period size: 120 Copynumber: 1.9 Consensus size: 120
99031019 AAGAGGTCTG
*
99031029 ATAGCACCTTATTTAATAAGGGGGACAAAAAACCCTAGTAAAATTAACTAGGGTTGTCACCCCCT
1 ATAGCACCTTATTTAATAAGGGAGACAAAAAACCCTAGTAAAATTAACTAGGGTTGTCACCCCCT
*
99031094 ACAACCTAGTTGAACTAGGATTCCATTTTTCTAGTTGAAATATGGAGGAGGTCCA
66 ACAACCTAGTTGAAATAGGATTCCATTTTTCTAGTTGAAATATGGAGGAGGTCCA
* ** * * * *
99031149 ATAGCCCCTTATTTAATAAGGGAGACAGCAAGCCCTAGTATAATTAACTTGGGTTGTTACCCCCT
1 ATAGCACCTTATTTAATAAGGGAGACAAAAAACCCTAGTAAAATTAACTAGGGTTGTCACCCCCT
* *
99031214 ACAACCTAGTTGAAATAGGATTTCGTTTTTCTAGTTGAAATA
66 ACAACCTAGTTGAAATAGGATTCCATTTTTCTAGTTGAAATA
99031256 AACTTCTATA
Statistics
Matches: 96, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
120 96 1.00
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.30
Consensus pattern (120 bp):
ATAGCACCTTATTTAATAAGGGAGACAAAAAACCCTAGTAAAATTAACTAGGGTTGTCACCCCCT
ACAACCTAGTTGAAATAGGATTCCATTTTTCTAGTTGAAATATGGAGGAGGTCCA
Found at i:99038382 original size:45 final size:45
Alignment explanation
Indices: 99038318--99038412 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 45
99038308 TAGAATTCCA
* * * *
99038318 ATATGTGTTTTTGTGTAAGATCACGTCTGGGACATTGGCATCGTT
1 ATATGCGTTTTTGTGTAAGACCACATCTGGGACATTGGCATCGAT
**
99038363 ATATGCGTTTTTGTGTAAGACCACATCTGGGATGTTGGCATCGAT
1 ATATGCGTTTTTGTGTAAGACCACATCTGGGACATTGGCATCGAT
99038408 ATATG
1 ATATG
99038413 TGGCATCGAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.22, C:0.14, G:0.26, T:0.38
Consensus pattern (45 bp):
ATATGCGTTTTTGTGTAAGACCACATCTGGGACATTGGCATCGAT
Found at i:99044649 original size:17 final size:17
Alignment explanation
Indices: 99044627--99044662 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
99044617 GGCAAGGATT
99044627 AACTCACTTGGTGAAAC
1 AACTCACTTGGTGAAAC
99044644 AACTCACTTGGTGAAAC
1 AACTCACTTGGTGAAAC
99044661 AA
1 AA
99044663 TTATGGAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.39, C:0.22, G:0.17, T:0.22
Consensus pattern (17 bp):
AACTCACTTGGTGAAAC
Found at i:99047608 original size:43 final size:43
Alignment explanation
Indices: 99047490--99047643 Score: 116
Period size: 43 Copynumber: 3.6 Consensus size: 43
99047480 TCATACAATG
* * * *
99047490 CCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATG
1 CCAATGTCCCAGACATGGTCTTACAAGTAATCAAATATCGATA
* * * * *
99047533 CCATTATCCCAGATAGGGTCTTACAAATAATCAAATA-CGATA
1 CCAATGTCCCAGACATGGTCTTACAAGTAATCAAATATCGATA
* * * *
99047575 CTAATGTCCCAAACATGGTCTTACACGTAAATCATAAGT-T-GATG
1 CCAATGTCCCAGACATGGTCTTACAAGT-AATCA-AA-TATCGATA
** *
99047619 CCAGCGTCCCACACATGGTCTTACA
1 CCAATGTCCCAGACATGGTCTTACA
99047644 CGAAAACACA
Statistics
Matches: 85, Mismatches: 22, Indels: 7
0.75 0.19 0.06
Matches are distributed among these distances:
42 24 0.28
43 34 0.40
44 26 0.31
45 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (43 bp):
CCAATGTCCCAGACATGGTCTTACAAGTAATCAAATATCGATA
Found at i:99052420 original size:6 final size:6
Alignment explanation
Indices: 99052390--99052580 Score: 133
Period size: 6 Copynumber: 31.0 Consensus size: 6
99052380 AAGAAACATT
* *
99052390 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * * *
99052437 GTGACAAA ATTAAA ATCAGA ATCAGA ATCAGA ATTAGGTA A-CAGA ATCAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* * *
99052488 ATCAGT ATCAGGTA A-CAGA ATCAGA ATCAGA ACCAGA ATCAGA ATTAAGTA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA A-TCAG-A
* *
99052539 A-CAGA ATCAAA ATCAGT ATCAAGTA AT-AGA ATCAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATC-AG-A ATCAGA ATCAGA ATCAGA
99052581 GTGTGAATGC
Statistics
Matches: 146, Mismatches: 22, Indels: 34
0.72 0.11 0.17
Matches are distributed among these distances:
5 11 0.08
6 114 0.78
7 13 0.09
8 8 0.05
ACGTcount: A:0.50, C:0.14, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:99052454 original size:37 final size:37
Alignment explanation
Indices: 99052404--99052532 Score: 129
Period size: 37 Copynumber: 3.5 Consensus size: 37
99052394 GAACTAGAAT
* *
99052404 CAAAATGAGAATCAGAATCAGAATCAGAATCAGGTGA
1 CAAAATCAGAATCAGAATCAGAATCAGAATCAGGTAA
* * *
99052441 CAAAATTAAAATCAGAATCAGAATCAGAATTAGGTAA
1 CAAAATCAGAATCAGAATCAGAATCAGAATCAGGTAA
* *
99052478 CAGAATCAGAATCAGTATCAGGTAA-CAGAATCA-G-AA
1 CAAAATCAGAATCAGAATCA-G-AATCAGAATCAGGTAA
* *
99052514 TCAGAACCAGAATCAGAAT
1 -CAAAATCAGAATCAGAAT
99052533 TAAGTAACAG
Statistics
Matches: 78, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
36 2 0.03
37 66 0.85
38 8 0.10
39 2 0.03
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (37 bp):
CAAAATCAGAATCAGAATCAGAATCAGAATCAGGTAA
Found at i:99052481 original size:25 final size:25
Alignment explanation
Indices: 99052453--99052519 Score: 116
Period size: 25 Copynumber: 2.7 Consensus size: 25
99052443 AAATTAAAAT
*
99052453 CAGAATCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
99052478 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
99052503 CAGAATCAGAATCAGAA
1 CAGAATCAGAATCAGAA
99052520 CCAGAATCAG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.18
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:99052483 original size:19 final size:19
Alignment explanation
Indices: 99052459--99052547 Score: 83
Period size: 19 Copynumber: 4.4 Consensus size: 19
99052449 AAATCAGAAT
99052459 CAGAATCAGAATTAGGTAA
1 CAGAATCAGAATTAGGTAA
99052478 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAG-A--A-T-T-AGGTAA
*
99052503 CAGAATCAGAATCA-G-AA
1 CAGAATCAGAATTAGGTAA
*
99052520 CCAGAATCAGAATTAAGTAA
1 -CAGAATCAGAATTAGGTAA
99052540 CAGAATCA
1 CAGAATCA
99052548 AAATCAGTAT
Statistics
Matches: 59, Mismatches: 2, Indels: 18
0.75 0.03 0.23
Matches are distributed among these distances:
17 2 0.03
18 14 0.24
19 19 0.32
20 3 0.05
21 1 0.02
22 2 0.03
23 1 0.02
24 2 0.03
25 15 0.25
ACGTcount: A:0.48, C:0.16, G:0.18, T:0.18
Consensus pattern (19 bp):
CAGAATCAGAATTAGGTAA
Found at i:99052485 original size:31 final size:30
Alignment explanation
Indices: 99052450--99052580 Score: 117
Period size: 31 Copynumber: 4.2 Consensus size: 30
99052440 ACAAAATTAA
99052450 AATCAGAATCAGAATCAGAATTAGGTAACAG
1 AATCAGAATCAGAATCAGAATTA-GTAACAG
* *
99052481 AATCAGAATCAGTATCAGGTAA-CAG-AATCAG
1 AATCAGAATCAGAATCA-G-AATTAGTAA-CAG
*
99052512 AATCAGAACCAGAATCAGAATTAAGTAACAG
1 AATCAGAATCAGAATCAGAATT-AGTAACAG
* *
99052543 AATCAAAATCAGTATCAAGTAA-TAG-AATCAG
1 AATCAGAATCAGAATC-AG-AATTAGTAA-CAG
99052574 AATCAGA
1 AATCAGA
99052581 GTGTGAATGC
Statistics
Matches: 82, Mismatches: 9, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
29 2 0.02
30 5 0.06
31 64 0.78
32 7 0.09
33 4 0.05
ACGTcount: A:0.50, C:0.15, G:0.17, T:0.19
Consensus pattern (30 bp):
AATCAGAATCAGAATCAGAATTAGTAACAG
Found at i:99052540 original size:37 final size:37
Alignment explanation
Indices: 99052478--99052554 Score: 109
Period size: 37 Copynumber: 2.1 Consensus size: 37
99052468 AATTAGGTAA
* * * *
99052478 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAAT
1 CAGAACCAGAATCAGAATCAAGTAACAGAATCAAAAT
*
99052515 CAGAACCAGAATCAGAATTAAGTAACAGAATCAAAAT
1 CAGAACCAGAATCAGAATCAAGTAACAGAATCAAAAT
99052552 CAG
1 CAG
99052555 TATCAAGTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.49, C:0.17, G:0.17, T:0.17
Consensus pattern (37 bp):
CAGAACCAGAATCAGAATCAAGTAACAGAATCAAAAT
Found at i:99052552 original size:25 final size:25
Alignment explanation
Indices: 99052416--99052580 Score: 103
Period size: 25 Copynumber: 6.6 Consensus size: 25
99052406 AAATGAGAAT
* *
99052416 CAGAATCAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGAATCAAGTAA
* * *
99052441 CAAAATTAAAATCAGAATC-AG-AA
1 CAGAATCAGAATCAGAATCAAGTAA
*
99052464 TCAGAATTAGGTAA-CAGAATC-AG-AA
1 -CAGAATCA-G-AATCAGAATCAAGTAA
*
99052489 TCAGTATCAGGTAA-CAGAATC-AG-AA
1 -CAGAATCA-G-AATCAGAATCAAGTAA
* *
99052514 TCAGAACCAGAATCAGAATTAAGTAA
1 -CAGAATCAGAATCAGAATCAAGTAA
* *
99052540 CAGAATCAAAATCAGTATCAAGTAA
1 CAGAATCAGAATCAGAATCAAGTAA
*
99052565 TAGAATCAGAATCAGA
1 CAGAATCAGAATCAGA
99052581 GTGTGAATGC
Statistics
Matches: 115, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
23 3 0.03
24 15 0.13
25 93 0.81
26 4 0.03
ACGTcount: A:0.50, C:0.15, G:0.17, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAAGTAA
Found at i:99052806 original size:69 final size:67
Alignment explanation
Indices: 99052728--99052867 Score: 181
Period size: 67 Copynumber: 2.1 Consensus size: 67
99052718 TCACTAGATA
* * * * *
99052728 CAGACATTGTGGCTAGGCCACCAGAATAGATATATATATGGCGAAGCCACCAGATTGCAGCGAGG
1 CAGACATTGTGACGAAGCCACCAGAACAG--ATATATATGGCGAAGCCACCAGATTGCAGCAAGG
99052793 CTGC
64 CTGC
* * * *
99052797 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCAAGGCT
1 CAGACATTGTGACGAAGCCACCAGAACAGATATATATGGCGAAGCCACCAGATTGCAGCAAGGCT
99052862 GC
66 GC
99052864 CAGA
1 CAGA
99052868 ACGCTTCCTC
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
67 39 0.63
69 23 0.37
ACGTcount: A:0.31, C:0.23, G:0.28, T:0.18
Consensus pattern (67 bp):
CAGACATTGTGACGAAGCCACCAGAACAGATATATATGGCGAAGCCACCAGATTGCAGCAAGGCT
GC
Found at i:99052845 original size:27 final size:26
Alignment explanation
Indices: 99052797--99052848 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
99052787 GCGAGGCTGC
*
99052797 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
99052823 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
99052849 TTGCAGCAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:99053074 original size:27 final size:27
Alignment explanation
Indices: 99053044--99053329 Score: 374
Period size: 27 Copynumber: 10.6 Consensus size: 27
99053034 AACACCCTAG
* * *
99053044 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* *
99053071 GGGTAAAACGATAATTCTATAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
** *
99053098 GGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* * *
99053125 GGGTAAAATGATAATTCTATAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
**
99053152 GGGTAAAATAGTAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* *
99053179 GGGTAAAATGGTAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
*
99053206 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
*
99053233 GGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
**
99053260 GGGTAAAAAAGTAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* *
99053287 GGGTAAAACAGTAATTCTGTAAATCAA
1 GGGTAAAACGGTAATTCTGTAAATCGA
*
99053314 GGGTAAAACGATAATT
1 GGGTAAAACGGTAATT
99053330 TTACAAACCA
Statistics
Matches: 230, Mismatches: 29, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 230 1.00
ACGTcount: A:0.42, C:0.07, G:0.22, T:0.29
Consensus pattern (27 bp):
GGGTAAAACGGTAATTCTGTAAATCGA
Found at i:99053331 original size:81 final size:81
Alignment explanation
Indices: 99053044--99053329 Score: 430
Period size: 81 Copynumber: 3.5 Consensus size: 81
99053034 AACACCCTAG
* * *
99053044 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATAG
1 GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATAG
99053109 TAATTTTGTAAATCGA
66 TAATTTTGTAAATCGA
* * * *
99053125 GGGTAAAATGATAATTCTATAAATCGAGGGTAAAA-TAGTAATTCTGTAAATCGAGGGTAAAATG
1 GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGA-TAATTCTGTAAATCGAGGGTAAAATA
99053189 GTAATTTTGTAAATCGA
65 GTAATTTTGTAAATCGA
* * *
99053206 GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAAAAG
1 GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATAG
*
99053271 TAATTCTGTAAATCGA
66 TAATTTTGTAAATCGA
* * *
99053287 GGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACGATAATT
1 GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATT
99053330 TTACAAACCA
Statistics
Matches: 186, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
80 1 0.01
81 185 0.99
ACGTcount: A:0.42, C:0.07, G:0.22, T:0.29
Consensus pattern (81 bp):
GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAATAG
TAATTTTGTAAATCGA
Found at i:99053549 original size:17 final size:18
Alignment explanation
Indices: 99053529--99053583 Score: 67
Period size: 17 Copynumber: 3.0 Consensus size: 18
99053519 AACTTATCCA
*
99053529 ATTGGGCCCGTA-GGCCC
1 ATTGGGCCCATATGGCCC
99053546 ATTGGGCCCATATGGCCC
1 ATTGGGCCCATATGGCCC
*
99053564 ATTTCGGCCCATCATGGCCC
1 A-TTGGGCCCAT-ATGGCCC
99053584 GAAGTAGCCA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
17 11 0.33
18 6 0.18
19 9 0.27
20 7 0.21
ACGTcount: A:0.15, C:0.36, G:0.27, T:0.22
Consensus pattern (18 bp):
ATTGGGCCCATATGGCCC
Done.