Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 296 of 349
Found at i:99053574 original size:19 final size:19
Alignment explanation
Indices: 99053541--99053583 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
99053531 TGGGCCCGTA
*
99053541 GGCCCATTGGGCCCAT-AT
1 GGCCCATTCGGCCCATCAT
99053559 GGCCCATTTCGGCCCATCAT
1 GGCCCA-TTCGGCCCATCAT
99053579 GGCCC
1 GGCCC
99053584 GAAGTAGCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 6 0.27
19 9 0.41
20 7 0.32
ACGTcount: A:0.14, C:0.40, G:0.26, T:0.21
Consensus pattern (19 bp):
GGCCCATTCGGCCCATCAT
Found at i:99063296 original size:28 final size:29
Alignment explanation
Indices: 99063248--99063313 Score: 98
Period size: 28 Copynumber: 2.3 Consensus size: 29
99063238 AAGTCTACAT
*
99063248 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
* *
99063276 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
99063305 ACATTCATA
1 ACATTCATA
99063314 GTCATGCTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
28 21 0.64
29 12 0.36
ACGTcount: A:0.30, C:0.32, G:0.14, T:0.24
Consensus pattern (29 bp):
ACATTCATATGGCCCACTAGGCCCAAATC
Found at i:99066153 original size:42 final size:43
Alignment explanation
Indices: 99066080--99066182 Score: 120
Period size: 42 Copynumber: 2.4 Consensus size: 43
99066070 ACATGTTATA
* * * *
99066080 CTTTAGTTTATCTGATGATACACTGTTTGTG-CAGTATAATTC
1 CTTTAGTTTATCCGATGACACACTGTGTGTGCCAATATAATTC
* * *
99066122 CTTT-GATTTATTCGATGACACATTGTGTGTGCCAATATAATTG
1 CTTTAG-TTTATCCGATGACACACTGTGTGTGCCAATATAATTC
99066165 CTTTAGTTTATCCGATGA
1 CTTTAGTTTATCCGATGA
99066183 TGCACTACTC
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
41 1 0.02
42 24 0.48
43 24 0.48
44 1 0.02
ACGTcount: A:0.24, C:0.15, G:0.17, T:0.44
Consensus pattern (43 bp):
CTTTAGTTTATCCGATGACACACTGTGTGTGCCAATATAATTC
Found at i:99066175 original size:43 final size:42
Alignment explanation
Indices: 99066080--99066182 Score: 111
Period size: 43 Copynumber: 2.4 Consensus size: 42
99066070 ACATGTTATA
* * *
99066080 CTTTAGTTTA-TCTGATGATACACTGTTTGTGCAGTATAATTC
1 CTTTAGTTTATTC-GATGACACACTGTGTGTGCAATATAATTC
* *
99066122 CTTT-GATTTATTCGATGACACATTGTGTGTGCCAATATAATTG
1 CTTTAG-TTTATTCGATGACACACTGTGTGTG-CAATATAATTC
*
99066165 CTTTAGTTTATCCGATGA
1 CTTTAGTTTATTCGATGA
99066183 TGCACTACTC
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
41 1 0.02
42 23 0.45
43 26 0.51
44 1 0.02
ACGTcount: A:0.24, C:0.15, G:0.17, T:0.44
Consensus pattern (42 bp):
CTTTAGTTTATTCGATGACACACTGTGTGTGCAATATAATTC
Found at i:99069838 original size:44 final size:41
Alignment explanation
Indices: 99069790--99069890 Score: 116
Period size: 40 Copynumber: 2.4 Consensus size: 41
99069780 TAGAACGATT
*
99069790 TCGCACACTTAGTGCCATTTCA-ATTAACCGAAGCTATCTTAGTA
1 TCGCACACTTAGTGCCA--TCATA-TAACCGAAGCTAT-TTAGAA
** *
99069834 TCGCACACTTAGTGCC-TCATATAGTCGAAGCTATTTTGAA
1 TCGCACACTTAGTGCCATCATATAACCGAAGCTATTTAGAA
99069874 TCGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
99069891 AATACAAATG
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
40 20 0.39
41 14 0.27
42 1 0.02
44 16 0.31
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.31
Consensus pattern (41 bp):
TCGCACACTTAGTGCCATCATATAACCGAAGCTATTTAGAA
Found at i:99078750 original size:92 final size:94
Alignment explanation
Indices: 99078581--99078750 Score: 218
Period size: 92 Copynumber: 1.8 Consensus size: 94
99078571 GACCTGGTTA
* ** *
99078581 GGCCCTACCAATTGGATGCATGCAGGCCTTGTAGTGGGGGCTCATTAAAAGGGCTCATAAGGGAA
1 GGCCCTACCAATTGGATGCATGCAGGCCTTGTAGTAGGGGCTCACCAAAAGGGCTCACAAGGGAA
* * *
99078646 GTTCGCGGTCCTATTTTTCAACCCAATTG
66 ATTCACGATCCTATTTTTCAACCCAATTG
* * * *
99078675 GGCCCTACC-ATTGGATGCGTGTAGG-CTTGTAGTAGGGGTTCGCCAAAAGGGCTCACAAGGGAA
1 GGCCCTACCAATTGGATGCATGCAGGCCTTGTAGTAGGGGCTCACCAAAAGGGCTCACAAGGGAA
*
99078738 ATTCATGATCCTA
66 ATTCACGATCCTA
99078751 ATTCGCATAT
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
92 41 0.64
93 14 0.22
94 9 0.14
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (94 bp):
GGCCCTACCAATTGGATGCATGCAGGCCTTGTAGTAGGGGCTCACCAAAAGGGCTCACAAGGGAA
ATTCACGATCCTATTTTTCAACCCAATTG
Found at i:99080706 original size:10 final size:10
Alignment explanation
Indices: 99080691--99080722 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
99080681 TAAATACATT
99080691 TAATTAAAGA
1 TAATTAAAGA
99080701 TAATTAAAGA
1 TAATTAAAGA
99080711 TAATTAAA-A
1 TAATTAAAGA
99080720 TAA
1 TAA
99080723 AATCCTAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (10 bp):
TAATTAAAGA
Found at i:99080744 original size:16 final size:16
Alignment explanation
Indices: 99080723--99080791 Score: 58
Period size: 16 Copynumber: 4.5 Consensus size: 16
99080713 ATTAAAATAA
99080723 AATCCTAAATTTAAAT
1 AATCCTAAATTTAAAT
* *
99080739 AATCCTAAAAATAAAGAT
1 AATCCT-AAATTTAA-AT
*
99080757 AAT--TAAA-AT-AA-
1 AATCCTAAATTTAAAT
99080768 AATCCTAAATTTAAAT
1 AATCCTAAATTTAAAT
99080784 AATCCTAA
1 AATCCTAA
99080792 TAATTATCTT
Statistics
Matches: 41, Mismatches: 5, Indels: 14
0.68 0.08 0.23
Matches are distributed among these distances:
11 3 0.07
12 1 0.02
13 5 0.12
14 1 0.02
15 5 0.12
16 15 0.37
17 6 0.15
18 5 0.12
ACGTcount: A:0.57, C:0.12, G:0.01, T:0.30
Consensus pattern (16 bp):
AATCCTAAATTTAAAT
Found at i:99080759 original size:45 final size:45
Alignment explanation
Indices: 99080705--99080791 Score: 174
Period size: 45 Copynumber: 1.9 Consensus size: 45
99080695 TAAAGATAAT
99080705 TAAAGATAATTAAAATAAAATCCTAAATTTAAATAATCCTAAAAA
1 TAAAGATAATTAAAATAAAATCCTAAATTTAAATAATCCTAAAAA
99080750 TAAAGATAATTAAAATAAAATCCTAAATTTAAATAATCCTAA
1 TAAAGATAATTAAAATAAAATCCTAAATTTAAATAATCCTAA
99080792 TAATTATCTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.59, C:0.09, G:0.02, T:0.30
Consensus pattern (45 bp):
TAAAGATAATTAAAATAAAATCCTAAATTTAAATAATCCTAAAAA
Found at i:99080812 original size:15 final size:15
Alignment explanation
Indices: 99080792--99080821 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
99080782 ATAATCCTAA
*
99080792 TAATTATCTTAATAT
1 TAATTATCCTAATAT
99080807 TAATTATCCTAATAT
1 TAATTATCCTAATAT
99080822 AAATAAAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:99082720 original size:137 final size:135
Alignment explanation
Indices: 99082355--99083009 Score: 560
Period size: 137 Copynumber: 4.9 Consensus size: 135
99082345 CGCTCTTAGT
* ** * * * * *
99082355 TGATGTCATAAAGGTTTATCAGTTTAAGATTGCAACCTCCAAAGCAA-TTGTGAACCTATGCTTC
1 TGATGTCATAAAGGTTTGTTGGTTTAAGATCGCAACCTCCAAAGCAACTAGAG-ACCTACGCTCC
* * * *
99082419 CAATTGACATTACAAGAGCTCGCAGAGTTAAGCTCGCAGCTCCGACACAGCTAGC-AGGCCTATG
65 CAATTGACATTATAAGAGCTCGCAGAGTTAAGCTCGCAGCTCCAACACAGCTAACGA-ACCTA-G
* **
99082483 CTCCTAGT
128 CTCCCAAC
** * * *
99082491 TGATGTCAT-AAGGTTTGTTTTTTTAAGATCGTAACCTCTAAAG---CTAGTAGACCTA-GCTCT
1 TGATGTCATAAAGGTTTGTTGGTTTAAGATCGCAACCTCCAAAGCAACTAG-AGACCTACGCTCC
** * * *** * * * *
99082551 CAGCTAACATTACAAGAGCTCATGGAGTTAAGCTCCCAGGTCCGACATAGCTAACGAACCTAGGC
65 CAATTGACATTATAAGAGCTCGCAGAGTTAAGCTCGCAGCTCCAACACAGCTAACGAACCTA-GC
99082616 TCCCAAC
129 TCCCAAC
** * ***
99082623 TGATGTCATAAAATTTTGTTTGTTTAAGATTATAACCTCCAAAGCAACTAGCAGACCTACGCTCC
1 TGATGTCATAAAGGTTTGTTGGTTTAAGATCGCAACCTCCAAAGCAACTAG-AGACCTACGCTCC
* * ** *
99082688 CAATTGACATTATAATAGCTCGCAGAGTTAAGCTCACAGCT----C-CAGCTAGTGGACCTAGCT
65 CAATTGACATTATAAGAGCTCGCAGAGTTAAGCTCGCAGCTCCAACACAGCTAACGAACCTAGCT
99082748 CCCAAC
130 CCCAAC
* * * *
99082754 TAATGTCATAAAGGTTTATCGGTTTAAGATCGCAATCTCCAAAGCAACTAGCAGACCTACGCTCC
1 TGATGTCATAAAGGTTTGTTGGTTTAAGATCGCAACCTCCAAAGCAACTAG-AGACCTACGCTCC
* * * * * * * * ** *
99082819 CAACTAACATTATAAGAACCCGTAAAGTTAAGCTTGCAGCTCCAACACAGTTAGTGGACCTACGC
65 CAATTGACATTATAAGAGCTCGCAGAGTTAAGCTCGCAGCTCCAACACAGCTAACGAACCTA-GC
99082884 TCCCAAC
129 TCCCAAC
* ** * * *
99082891 TGATGTCATAAAGTTTTGTTGGTAAAAGATCACAACCTCTAAAGCAGCTAGAGAACCTACGCTCC
1 TGATGTCATAAAGGTTTGTTGGTTTAAGATCGCAACCTCCAAAGCAACTAGAG-ACCTACGCTCC
* *
99082956 CAATTGACATTATAAGAGCTCACAGAGTTAAGCTCGCAGATCCAACACAGCTAA
65 CAATTGACATTATAAGAGCTCGCAGAGTTAAGCTCGCAGCTCCAACACAGCTAA
99083010 AAAGGCTATC
Statistics
Matches: 415, Mismatches: 89, Indels: 29
0.78 0.17 0.05
Matches are distributed among these distances:
131 96 0.23
132 78 0.19
133 37 0.09
134 1 0.00
135 28 0.07
136 36 0.09
137 139 0.33
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.26
Consensus pattern (135 bp):
TGATGTCATAAAGGTTTGTTGGTTTAAGATCGCAACCTCCAAAGCAACTAGAGACCTACGCTCCC
AATTGACATTATAAGAGCTCGCAGAGTTAAGCTCGCAGCTCCAACACAGCTAACGAACCTAGCTC
CCAAC
Found at i:99082828 original size:268 final size:264
Alignment explanation
Indices: 99082376--99082999 Score: 671
Period size: 268 Copynumber: 2.3 Consensus size: 264
99082366 AGGTTTATCA
* * * * * *
99082376 GTTTAAGATTGCAACCTCCAAAGCAA-TTGTGAACCTATGCTTCCAATTGACATTACAAGAGCTC
1 GTTTAAGATTACAACCTCCAAAGCAACTAGAGAACCTACGCTCCCAATTGACATTATAAGAGCTC
* ** *
99082440 GCAGAGTTAAGCTCGCAGCTCCGACACAGCTAGCAGGCCTATGCTCCTAGTTGATGTCATAAGGT
66 GCAGAGTTAAGCTCGCAGCT----C-CAGCTAGCAGGCCTATGCTCCCAACTAATGTCATAAGGT
* *** * * * * * *
99082505 TTGTTTTTTTAAGATCGTAACCTCTAAAGCTAGTAGACCTAGCTCTCAGCTAACATTACAAGAGC
126 TTATCGGTTTAAGATCGCAACCTCCAAAGCTAGCAGACCTAGCTCCCAACTAACATTACAAGAAC
* ** * * * *
99082570 TCATGGAGTTAAGCTCCCAGGTCCGACATAGCTAACGAACCTAGGCTCCCAACTGATGTCATAAA
191 CCATAAAGTTAAGCTCCCAGCTCCAACACAGCTAACGAACCTACGCTCCCAACTGATGTCATAAA
*
99082635 ATTTTGTTT
256 ATTTTGTTG
* *
99082644 GTTTAAGATTATAACCTCCAAAGCAACTAGCAG-ACCTACGCTCCCAATTGACATTATAATAGCT
1 GTTTAAGATTACAACCTCCAAAGCAACTAG-AGAACCTACGCTCCCAATTGACATTATAAGAGCT
* *
99082708 CGCAGAGTTAAGCTCACAGCTCCAGCTAG-TGGACCTA-GCTCCCAACTAATGTCATAAAGGTTT
65 CGCAGAGTTAAGCTCGCAGCTCCAGCTAGCAGG-CCTATGCTCCCAACTAATGTCAT-AAGGTTT
* *
99082771 ATCGGTTTAAGATCGCAATCTCCAAAGCAACTAGCAGACCTACGCTCCCAACTAACATTATAAGA
128 ATCGGTTTAAGATCGCAACCTCCAAAG---CTAGCAGACCTA-GCTCCCAACTAACATTACAAGA
* ** * ** *
99082836 ACCCGTAAAGTTAAGCTTGCAGCTCCAACACAGTTAGTGGACCTACGCTCCCAACTGATGTCATA
189 ACCCATAAAGTTAAGCTCCCAGCTCCAACACAGCTAACGAACCTACGCTCCCAACTGATGTCATA
*
99082901 AAGTTTTGTTG
254 AAATTTTGTTG
** * * *
99082912 GTAAAAGATCACAACCTCTAAAGCAGCTAGAGAACCTACGCTCCCAATTGACATTATAAGAGCTC
1 GTTTAAGATTACAACCTCCAAAGCAACTAGAGAACCTACGCTCCCAATTGACATTATAAGAGCTC
* *
99082977 ACAGAGTTAAGCTCGCAGATCCA
66 GCAGAGTTAAGCTCGCAGCTCCA
99083000 ACACAGCTAA
Statistics
Matches: 295, Mismatches: 52, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
263 16 0.05
264 38 0.13
265 1 0.00
267 13 0.04
268 177 0.60
269 49 0.17
270 1 0.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (264 bp):
GTTTAAGATTACAACCTCCAAAGCAACTAGAGAACCTACGCTCCCAATTGACATTATAAGAGCTC
GCAGAGTTAAGCTCGCAGCTCCAGCTAGCAGGCCTATGCTCCCAACTAATGTCATAAGGTTTATC
GGTTTAAGATCGCAACCTCCAAAGCTAGCAGACCTAGCTCCCAACTAACATTACAAGAACCCATA
AAGTTAAGCTCCCAGCTCCAACACAGCTAACGAACCTACGCTCCCAACTGATGTCATAAAATTTT
GTTG
Found at i:99088837 original size:13 final size:13
Alignment explanation
Indices: 99088819--99088855 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
99088809 ATATGTATTC
99088819 ATTTATTTATAAT
1 ATTTATTTATAAT
99088832 ATTTATTTATAAT
1 ATTTATTTATAAT
*
99088845 TTTATATTTAT
1 ATT-TATTTAT
99088856 TTTTTATCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (13 bp):
ATTTATTTATAAT
Found at i:99088872 original size:21 final size:20
Alignment explanation
Indices: 99088824--99088880 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 20
99088814 TATTCATTTA
*
99088824 TTTATAATATTTATTTATAAT
1 TTTA-AATATTTATTTTTAAT
*
99088845 TTT--ATATTTATTTTTTAT
1 TTTAAATATTTATTTTTAAT
99088863 CTTTAAATATTTTATTTT
1 -TTTAAATA-TTTATTTT
99088881 AGATATTAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
18 13 0.43
19 3 0.10
21 6 0.20
22 8 0.27
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTAAATATTTATTTTTAAT
Found at i:99089568 original size:24 final size:27
Alignment explanation
Indices: 99089541--99089594 Score: 69
Period size: 24 Copynumber: 2.1 Consensus size: 27
99089531 TAATGAGAAT
99089541 CATTAATATCT-TAAGT-TTTTT-TTA
1 CATTAATATCTATAAGTATTTTTGTTA
* *
99089565 CATTATTATTTATAAGTATTTTTGTTA
1 CATTAATATCTATAAGTATTTTTGTTA
99089592 CAT
1 CAT
99089595 AAAATATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 9 0.36
25 5 0.20
26 5 0.20
27 6 0.24
ACGTcount: A:0.30, C:0.07, G:0.06, T:0.57
Consensus pattern (27 bp):
CATTAATATCTATAAGTATTTTTGTTA
Found at i:99095255 original size:43 final size:43
Alignment explanation
Indices: 99095100--99095256 Score: 151
Period size: 43 Copynumber: 3.7 Consensus size: 43
99095090 TGTGTTTTCG
* **
99095100 TGTAAGACCACATCTAGGACGTTGGCATCGACT-TACGATTTACA
1 TGTAAGACCACATCTGGGACGTTGGCATCGA-TATTTGA-TTACA
* * * *
99095144 TATAAGACCACGTCTGGGACGTTGGCATC-ATATTTGATTTCG
1 TGTAAGACCACATCTGGGACGTTGGCATCGATATTTGATTACA
***
99095186 TGTAAGACCTTGTCTAGGGTA-G-TGGCATCGATATTTGATTACA
1 TGTAAGACCACATCT-GGG-ACGTTGGCATCGATATTTGATTACA
*
99095229 TGTAAGACTACATCTGGGACGTTGGCAT
1 TGTAAGACCACATCTGGGACGTTGGCAT
99095257 TGTATGAGCT
Statistics
Matches: 91, Mismatches: 16, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
41 1 0.01
42 27 0.30
43 36 0.40
44 27 0.30
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACATCTGGGACGTTGGCATCGATATTTGATTACA
Found at i:99097447 original size:19 final size:19
Alignment explanation
Indices: 99097400--99097451 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
99097390 TATGCGCTTA
* *
99097400 TGTGCCAAGATACACCTTG
1 TGTGCCAGGATGCACCTTG
99097419 TGTGCCAGGATGCACCTTG
1 TGTGCCAGGATGCACCTTG
**
99097438 TGTGTTAGGATGCA
1 TGTGCCAGGATGCA
99097452 TTTCGTGTGA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (19 bp):
TGTGCCAGGATGCACCTTG
Found at i:99105444 original size:47 final size:47
Alignment explanation
Indices: 99105385--99105684 Score: 465
Period size: 47 Copynumber: 6.4 Consensus size: 47
99105375 GATGTACAAT
* *
99105385 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
99105432 GTGTATATATGTGATATGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
99105479 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
99105526 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * * * *
99105573 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
99105620 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
99105667 GCGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
99105685 TCCCGAAGGG
Statistics
Matches: 231, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 231 1.00
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
Found at i:99111380 original size:24 final size:24
Alignment explanation
Indices: 99111351--99111398 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
99111341 CCAAGCATGC
99111351 TCAACATTTGAGAATCGTATTCAG
1 TCAACATTTGAGAATCGTATTCAG
99111375 TCAACATTTGAGAATCGTATTCAG
1 TCAACATTTGAGAATCGTATTCAG
99111399 ACTTCGAGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (24 bp):
TCAACATTTGAGAATCGTATTCAG
Found at i:99119199 original size:16 final size:18
Alignment explanation
Indices: 99119178--99119210 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
99119168 TGTTTTTGTA
99119178 TGAATG-ATAT-TATTAT
1 TGAATGAATATCTATTAT
99119194 TGAATGAATATCTATTA
1 TGAATGAATATCTATTA
99119211 ATGTTTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 4 0.27
18 5 0.33
ACGTcount: A:0.39, C:0.03, G:0.12, T:0.45
Consensus pattern (18 bp):
TGAATGAATATCTATTAT
Found at i:99119253 original size:20 final size:20
Alignment explanation
Indices: 99119228--99119268 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
99119218 TTTTTGAAGT
99119228 AAATCTTGAATTGAAATTGC
1 AAATCTTGAATTGAAATTGC
99119248 AAATCTTGAATTGAAATTGC
1 AAATCTTGAATTGAAATTGC
99119268 A
1 A
99119269 TATCCTTGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.41, C:0.10, G:0.15, T:0.34
Consensus pattern (20 bp):
AAATCTTGAATTGAAATTGC
Found at i:99123079 original size:25 final size:25
Alignment explanation
Indices: 99123051--99123100 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
99123041 TCCAACATGC
99123051 TCAACATTTTGAGAATCGTATTCAG
1 TCAACATTTTGAGAATCGTATTCAG
99123076 TCAACATTTTGAGAATCGTATTCAG
1 TCAACATTTTGAGAATCGTATTCAG
99123101 ACTTCGAGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (25 bp):
TCAACATTTTGAGAATCGTATTCAG
Found at i:99128907 original size:47 final size:47
Alignment explanation
Indices: 99128848--99129146 Score: 447
Period size: 47 Copynumber: 6.4 Consensus size: 47
99128838 GATGTACAAG
* * *
99128848 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
99128895 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG-AA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
99128941 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
99128988 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * * * *
99129035 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
99129082 GTCTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
99129129 GCGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
99129147 TCCCGAAGGG
Statistics
Matches: 227, Mismatches: 24, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
46 43 0.19
47 184 0.81
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:99129100 original size:94 final size:94
Alignment explanation
Indices: 99128848--99129146 Score: 501
Period size: 94 Copynumber: 3.2 Consensus size: 94
99128838 GATGTACAAG
*
99128848 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
99128913 GCCGAATGGCCAATGTGATGAATGTG-AA
66 GCCGAATGGCCAATGTGATGAATGTGAAA
*
99128941 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
99129006 GCCGAATGGCCAATGTGATGAATGTGAAA
66 GCCGAATGGCCAATGTGATGAATGTGAAA
* * * * *
99129035 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTCTATATATGTGATAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
*
99129100 GCCGAATGGCCAATGTGATGGATGTGAAA
66 GCCGAATGGCCAATGTGATGAATGTGAAA
* *
99129129 GCGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
99129147 TCCCGAAGGG
Statistics
Matches: 195, Mismatches: 10, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
93 91 0.47
94 104 0.53
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (94 bp):
GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
GCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:99134840 original size:24 final size:24
Alignment explanation
Indices: 99134811--99134858 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
99134801 CCAAGCATGC
99134811 TCAACATTTGAGAATCGTATTCAG
1 TCAACATTTGAGAATCGTATTCAG
99134835 TCAACATTTGAGAATCGTATTCAG
1 TCAACATTTGAGAATCGTATTCAG
99134859 ACTTCGAGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (24 bp):
TCAACATTTGAGAATCGTATTCAG
Found at i:99142662 original size:16 final size:18
Alignment explanation
Indices: 99142641--99142673 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
99142631 TGTTTTTGTA
99142641 TGAATG-ATAT-TATTAT
1 TGAATGAATATCTATTAT
99142657 TGAATGAATATCTATTA
1 TGAATGAATATCTATTA
99142674 ATGTTTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 4 0.27
18 5 0.33
ACGTcount: A:0.39, C:0.03, G:0.12, T:0.45
Consensus pattern (18 bp):
TGAATGAATATCTATTAT
Found at i:99143657 original size:23 final size:24
Alignment explanation
Indices: 99143626--99143677 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 24
99143616 CCGACCTCTA
*
99143626 TATTTAAATGATAAAATAAT-TTT
1 TATTAAAATGATAAAATAATATTT
* *
99143649 TATTAAAATTATAAAATTATATTT
1 TATTAAAATGATAAAATAATATTT
99143673 TATTA
1 TATTA
99143678 TTTATAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
23 17 0.68
24 8 0.32
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (24 bp):
TATTAAAATGATAAAATAATATTT
Found at i:99145279 original size:18 final size:21
Alignment explanation
Indices: 99145237--99145276 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
99145227 CAATAAATTT
*
99145237 CAAATAAAAAAATTATCAAGC
1 CAAATAAAAAAATTACCAAGC
99145258 CAAA-AAAAAAATT-CCAAGC
1 CAAATAAAAAAATTACCAAGC
99145277 AAACCACGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 9 0.50
21 4 0.22
ACGTcount: A:0.62, C:0.17, G:0.05, T:0.15
Consensus pattern (21 bp):
CAAATAAAAAAATTACCAAGC
Found at i:99145383 original size:3 final size:3
Alignment explanation
Indices: 99145375--99145417 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
99145365 GTGAGAGATG
99145375 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
99145418 GAGATCAGAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:99153769 original size:22 final size:22
Alignment explanation
Indices: 99153742--99153788 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
99153732 TAGTGTATCC
99153742 AAAACATTAGGAAACAATAATA
1 AAAACATTAGGAAACAATAATA
99153764 AAAACATTAGGAAACAATAATA
1 AAAACATTAGGAAACAATAATA
99153786 AAA
1 AAA
99153789 TAGAAAATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.66, C:0.09, G:0.09, T:0.17
Consensus pattern (22 bp):
AAAACATTAGGAAACAATAATA
Found at i:99162125 original size:42 final size:42
Alignment explanation
Indices: 99162047--99162257 Score: 181
Period size: 42 Copynumber: 4.9 Consensus size: 42
99162037 TTGGCCTCGG
* * * * * *
99162047 TATGTGATTTCATGTAAGGCCATATCTAGGATATGGCATTGA
1 TATGAGATTTCGTGTAAGACCATGTCTGGGACATGGCATTGA
*
99162089 TATGAGATTTCGTGTAAGACCAGGTCTGGGACATGGCATTGA
1 TATGAGATTTCGTGTAAGACCATGTCTGGGACATGGCATTGA
* * * *
99162131 TTTGAGGTTCCGTGTAAGACCATGTCTGGGACATGGCATCGGTA
1 TATGAGATTTCGTGTAAGACCATGTCTGGGACATGGCAT-TG-A
* * * * **
99162175 CTGACGTGAGATTTCGTATAAAACCATATCTGGGATATGGCATCCA
1 -T-A--TGAGATTTCGTGTAAGACCATGTCTGGGACATGGCATTGA
* *
99162221 TATGTAGA-CTCATGTAAGACCATGTCTGGGACATGGC
1 TATG-AGATTTCGTGTAAGACCATGTCTGGGACATGGC
99162258 TTTGGAATTC
Statistics
Matches: 135, Mismatches: 27, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
42 95 0.70
43 4 0.03
44 2 0.01
45 2 0.01
46 1 0.01
48 31 0.23
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.30
Consensus pattern (42 bp):
TATGAGATTTCGTGTAAGACCATGTCTGGGACATGGCATTGA
Found at i:99162185 original size:90 final size:90
Alignment explanation
Indices: 99162091--99162257 Score: 219
Period size: 90 Copynumber: 1.9 Consensus size: 90
99162081 GGCATTGATA
* * * ** * ** *
99162091 TGAGATTTCGTGTAAGACCAGGTCTGGGACATGGCATTGATTTG-AGGTTCCGTGTAAGACCATG
1 TGAGATTTCGTATAAAACCAGATCTGGGACATGGCATCCATATGTAGACT-CATGTAAGACCATG
99162155 TCTGGGACATGGCATCGGTACTGACG
65 TCTGGGACATGGCATCGGTACTGACG
* *
99162181 TGAGATTTCGTATAAAACCATATCTGGGATATGGCATCCATATGTAGACTCATGTAAGACCATGT
1 TGAGATTTCGTATAAAACCAGATCTGGGACATGGCATCCATATGTAGACTCATGTAAGACCATGT
99162246 CTGGGACATGGC
66 CTGGGACATGGC
99162258 TTTGGAATTC
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
90 62 0.95
91 3 0.05
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (90 bp):
TGAGATTTCGTATAAAACCAGATCTGGGACATGGCATCCATATGTAGACTCATGTAAGACCATGT
CTGGGACATGGCATCGGTACTGACG
Found at i:99189987 original size:48 final size:48
Alignment explanation
Indices: 99189907--99190043 Score: 168
Period size: 48 Copynumber: 2.9 Consensus size: 48
99189897 ACTACGATTA
*
99189907 ATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGTGTTGAT
1 ATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGTATTGAT
*
99189955 ATGATAGCTAGTGTAAGACCATGTCT-GAGACATGGCATCGGTATTGAT
1 ATGAGAGCTAGTGTAAGACCATGTCTAG-GACATGGCATCGGTATTGAT
* * * * * * * *
99190003 ATGTGTGCCAGTATAAGACCATATCTGGGATATTGCATCGG
1 ATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGG
99190044 CCTCGGTATG
Statistics
Matches: 77, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
47 1 0.01
48 75 0.97
49 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (48 bp):
ATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGTATTGAT
Found at i:99190128 original size:42 final size:42
Alignment explanation
Indices: 99190102--99190210 Score: 164
Period size: 42 Copynumber: 2.6 Consensus size: 42
99190092 TATGAAATTT
99190102 CGTGTAAGACTAGGTCTGGGACATGACATCGATGTGAGGTCC
1 CGTGTAAGACTAGGTCTGGGACATGACATCGATGTGAGGTCC
* ** *
99190144 CGTGTAATACTAGGTCTCAGACATGATATCGATGTGAGGTCC
1 CGTGTAAGACTAGGTCTGGGACATGACATCGATGTGAGGTCC
* *
99190186 CGTGTAAGACCATGTCTGGGACATG
1 CGTGTAAGACTAGGTCTGGGACATG
99190211 GCATTGGCAC
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 58 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (42 bp):
CGTGTAAGACTAGGTCTGGGACATGACATCGATGTGAGGTCC
Found at i:99194156 original size:46 final size:46
Alignment explanation
Indices: 99194096--99194364 Score: 324
Period size: 46 Copynumber: 5.8 Consensus size: 46
99194086 TCTAATATAA
* * * *
99194096 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTCTTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCATGT
** *
99194142 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCATGT
* * ** * ***
99194188 TGTCATAGTATCTTTCAACCATCATCTTATTCATTTCCCATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCATGT
* * **
99194234 TGCCATGATATCTTTCAACCATGGTCTTATTCATTTCATGTCACAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCATGT
* *
99194280 TGCCATGATATCTTTCAACCATGGTCTTACAT-ATTTCATTTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTAC-TCATTTCATGTCATGT
*
99194326 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT
99194365 ATCAGAAAGC
Statistics
Matches: 189, Mismatches: 32, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
46 188 0.99
47 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.12, T:0.42
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCATGT
Found at i:99198124 original size:43 final size:43
Alignment explanation
Indices: 99198032--99198125 Score: 120
Period size: 42 Copynumber: 2.2 Consensus size: 43
99198022 CATTAGGGTT
* *
99198032 ATTTGAG-TTTACGTGTAAGACCATATCTTGGATATGGCATCG
1 ATTTGAGATTTACGTGTAAGACCATAGCTAGGATATGGCATCG
* * *
99198074 ATATGAGATTT-CGTGTAAGGCCATAGCTAGGCTATTGGCATCG
1 ATTTGAGATTTACGTGTAAGACCATAGCTAGGATA-TGGCATCG
99198117 ATTTGAGAT
1 ATTTGAGAT
99198126 CCCATGTAAG
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
42 25 0.57
43 19 0.43
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.34
Consensus pattern (43 bp):
ATTTGAGATTTACGTGTAAGACCATAGCTAGGATATGGCATCG
Found at i:99201018 original size:102 final size:100
Alignment explanation
Indices: 99200862--99201259 Score: 379
Period size: 101 Copynumber: 4.0 Consensus size: 100
99200852 TAAAATGGTT
* * *
99200862 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACAAGATTGTTAGGTCACATGTGT
1 TTAGATCACATGTGTAGTACTAAGTACAGGCTACTACGTGTACAAGATTGTTAGGTCACATGTGT
* *
99200927 AGTACTAAGTGCCGGCAACTATGCGTACCTGATAG
66 AGTACTAAGTGCAGGCAACTATGCGTACCAGATAG
* * * *
99200962 CTTTGATCAC-TGTGTAGTACTAAGTACAGGGTACTACGTGTATCTGACGATT-TTAGGTCACGT
1 -TTAGATCACATGTGTAGTACTAAGTACAGGCTACTACGTGTA-C--AAGATTGTTAGGTCACAT
* * *
99201025 GTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG
62 GTGTAGTACTAAGTGCAGGCAACTATGCGTACCAGATAG
* * * * *** ** * * *
99201064 TTAGGTCGCATGTGTAGTACTAAGTGCAAGCTACTATACGTACCCGATAGCTTCGATCACATGTG
1 TTAGATCACATGTGTAGTACTAAGTACAGGCTACTACGTGTACAAGATTG-TTAGGTCACATGTG
** * * * ** *
99201129 TAGTACTAAGTATAGGCTACTACGTGTATTAGATGG
65 TAGTACTAAGTGCAGGCAACTATGCGTACCAGATAG
* * * * *
99201165 TTAGGTCACGTGTGTAGTACTAAGTGCAGCCTACTACGTGTACCAA-ATTGTTAGGTCGCATGTG
1 TTAGATCACATGTGTAGTACTAAGTACAGGCTACTACGTGTA-CAAGATTGTTAGGTCACATGTG
*
99201229 TAGTACTAAGTGCAGGCTACTATGCGTACCA
65 TAGTACTAAGTGCAGGCAACTATGCGTACCA
99201260 AAGAGCTTCG
Statistics
Matches: 240, Mismatches: 50, Indels: 15
0.79 0.16 0.05
Matches are distributed among these distances:
99 4 0.02
100 66 0.28
101 94 0.39
102 71 0.30
103 5 0.02
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (100 bp):
TTAGATCACATGTGTAGTACTAAGTACAGGCTACTACGTGTACAAGATTGTTAGGTCACATGTGT
AGTACTAAGTGCAGGCAACTATGCGTACCAGATAG
Found at i:99201100 original size:152 final size:150
Alignment explanation
Indices: 99200860--99201258 Score: 629
Period size: 152 Copynumber: 2.6 Consensus size: 150
99200850 TTTAAAATGG
* *
99200860 TTTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACAAGATTGTTAGGTCACATGT
1 TTTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGT
* * * *
99200925 GTAGTACTAAGTGCCGGCAACTATGCGTACCTGATAGCTTTGATCAC-TGTGTAGTACTAAGTAC
66 GTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGCTTCGATCACATGTGTAGTACTAAGTAC
*
99200989 AGGGTACTACGTGTATCTGACGA
131 AGGCTACTACGTGTAT-T-A-GA
*
99201012 TTTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCGCATGT
1 TTTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGT
* * *
99201077 GTAGTACTAAGTGCAAGCTACTATACGTACCCGATAGCTTCGATCACATGTGTAGTACTAAGTAT
66 GTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGCTTCGATCACATGTGTAGTACTAAGTAC
99201142 AGGCTACTACGTGTATTAGA
131 AGGCTACTACGTGTATTAGA
* * *
99201162 TGGTTAGGTCACGTGTGTAGTACTAAGTGCAGCCTACTACGTGTACCAAATTGTTAGGTCGCATG
1 T-TTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATG
99201227 TGTAGTACTAAGTGCAGGCTACTATGCGTACC
65 TGTAGTACTAAGTGCAGGCTACTATGCGTACC
99201259 AAAGAGCTTC
Statistics
Matches: 228, Mismatches: 17, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
150 3 0.01
151 90 0.39
152 104 0.46
153 31 0.14
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (150 bp):
TTTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGT
GTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGCTTCGATCACATGTGTAGTACTAAGTAC
AGGCTACTACGTGTATTAGA
Found at i:99201261 original size:50 final size:50
Alignment explanation
Indices: 99200817--99201259 Score: 433
Period size: 50 Copynumber: 8.8 Consensus size: 50
99200807 TTGAGAGAAG
* * ** *
99200817 ACATGTGTAGTACTATGTGCAGCCTACTATGTGTTTAAAATGGTT-TTAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTG--TACCA-GATTGTTAGGTC
* * *
99200869 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACAAGATTGTTAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTC
* * * * * * *
99200919 ACATGTGTAGTACTAAGTGCCGGCAACTATGCGTACCTGATAGCTTTGATC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG-TTAGGTC
* * * *
99200970 AC-TGTGTAGTACTAAGTACAGGGTACTACGTGTATCTGACGATT-TTAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-C-CA-GATTGTTAGGTC
*
99201021 ACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTC
* * ** * * * *
99201071 GCATGTGTAGTACTAAGTGCAAGCTACTATACGTACCCGATAGCTTCGATC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG-TTAGGTC
** * ** *
99201122 ACATGTGTAGTACTAAGTATAGGCTACTACGTGTATTAGATGGTTAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTC
* * * *
99201172 ACGTGTGTAGTACTAAGTGCAGCCTACTACGTGTACCAAATTGTTAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTC
* *
99201222 GCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA
1 ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCA
99201260 AAGAGCTTCG
Statistics
Matches: 317, Mismatches: 66, Indels: 18
0.79 0.16 0.04
Matches are distributed among these distances:
49 7 0.02
50 196 0.62
51 53 0.17
52 58 0.18
53 3 0.01
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (50 bp):
ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTC
Found at i:99208361 original size:46 final size:47
Alignment explanation
Indices: 99208212--99208387 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 47
99208202 TCACTTGTGT
* * * * * *
99208212 GAGCTAGTGTAAGACATGTCTGGGACA-CGCATCAGCCAC-ATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGA-GACGA
* *
99208258 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGCCTCGAGACGA
* *
99208306 GTGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAGACG-A
99208353 -AGCCAGTGTAAGACATGTCTGGGAC-TGGCATCGGC
1 GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGC
99208388 ACAGATATGC
Statistics
Matches: 111, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
45 1 0.01
46 59 0.53
47 28 0.25
48 22 0.20
49 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.31, T:0.21
Consensus pattern (47 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAGACGA
Found at i:99208410 original size:94 final size:94
Alignment explanation
Indices: 99208215--99208429 Score: 231
Period size: 94 Copynumber: 2.3 Consensus size: 94
99208205 CTTGTGTGAG
* * *
99208215 CTAGTGTAAGACATGTCTGGGACACGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCT
1 CTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGACGAGAGCCAGTGTAAGACCATGTCT
** ***
99208280 GGGACATGGCATCGGCATTGAGACGAGTG
66 GGGACATGGCATCGGCACAGAGACGAAAA
* *
99208309 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACGTA-AGCCAGTGTAAGA-CATGT
1 CTAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATGACG-AGAGCCAGTGTAAGACCATGT
* *
99208371 CTGGGAC-TGGCATCGGCACAGATATGCTAAAA
64 CTGGGACATGGCATCGGCACAGAGA--CGAAAA
* *
99208403 CTTGTGTAAGACCATGTCTAGGACATG
1 CTAGTGTAAGA-CATGTCTGGGACATG
99208430 GCATTAGCAC
Statistics
Matches: 102, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
92 14 0.14
93 12 0.12
94 60 0.59
95 16 0.16
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (94 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGACGAGAGCCAGTGTAAGACCATGTCT
GGGACATGGCATCGGCACAGAGACGAAAA
Found at i:99217187 original size:46 final size:46
Alignment explanation
Indices: 99216868--99217186 Score: 478
Period size: 46 Copynumber: 6.9 Consensus size: 46
99216858 TTTGACATAA
* * * *
99216868 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCACGT
* * *
99216914 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
*
99216960 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* * *
99217006 TACCCTGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* *
99217052 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
* *
99217098 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
*
99217144 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCA
99217187 GAGAGCACAC
Statistics
Matches: 256, Mismatches: 16, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 4 0.02
46 252 0.98
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGT
Found at i:99219288 original size:11 final size:11
Alignment explanation
Indices: 99219272--99219329 Score: 71
Period size: 11 Copynumber: 5.2 Consensus size: 11
99219262 TTCTTTATAC
99219272 TAATAAAATAA
1 TAATAAAATAA
99219283 TAATAAAATAA
1 TAATAAAATAA
*
99219294 TAATAAATATAT
1 TAATAAA-ATAA
* *
99219306 TATTAAAATAT
1 TAATAAAATAA
*
99219317 TAGTAAAATAA
1 TAATAAAATAA
99219328 TA
1 TA
99219330 TTTATCTAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
11 33 0.79
12 9 0.21
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:99222251 original size:22 final size:23
Alignment explanation
Indices: 99222226--99222268 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
99222216 ATTTTCGGGC
*
99222226 TTAGGGGTAAA-TGGTCATTTTG
1 TTAGGGGCAAATTGGTCATTTTG
99222248 TTAGGGGCAAATTGGTCATTT
1 TTAGGGGCAAATTGGTCATTT
99222269 CTCCCAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.23, C:0.07, G:0.30, T:0.40
Consensus pattern (23 bp):
TTAGGGGCAAATTGGTCATTTTG
Found at i:99222727 original size:47 final size:43
Alignment explanation
Indices: 99222607--99222738 Score: 113
Period size: 47 Copynumber: 2.9 Consensus size: 43
99222597 TCACTTGTGT
*
99222607 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGACACATTATGA
1 GAGCTAGTGTAAAACATGTCTGGGACATGCATCGG---CATTATGA
* * *
99222653 GAGCCAGTGTAAGACCATGACTGGGACATAGCATCGGCATTGA-GA
1 GAGCTAGTGTAA-AACATGTCTGGGACAT-GCATCGGCATT-ATGA
* *
99222698 CGAGTGCTAGTGTAAAACATGTCTAGGACATGGCATTGGCA
1 -GA--GCTAGTGTAAAACATGTCTGGGACAT-GCATCGGCA
99222739 CAGATATGCT
Statistics
Matches: 70, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
45 6 0.09
46 14 0.20
47 34 0.49
48 16 0.23
ACGTcount: A:0.30, C:0.18, G:0.30, T:0.22
Consensus pattern (43 bp):
GAGCTAGTGTAAAACATGTCTGGGACATGCATCGGCATTATGA
Found at i:99226703 original size:85 final size:85
Alignment explanation
Indices: 99226560--99226732 Score: 337
Period size: 85 Copynumber: 2.0 Consensus size: 85
99226550 CCTTCATGAA
99226560 ACACATTCAAAACAATCAAACTCATGGCATACATCATCCCAAAACCTAGATGACTAACCAATTAA
1 ACACATTCAAAACAATCAAACTCATGGCATACATCATCCCAAAACCTAGATGACTAACCAATTAA
99226625 TAACACAAAAGCATGTATAT
66 TAACACAAAAGCATGTATAT
*
99226645 ACACATTCAAAACAATCAAACTCATGGCATACATTATCCCAAAACCTAGATGACTAACCAATTAA
1 ACACATTCAAAACAATCAAACTCATGGCATACATCATCCCAAAACCTAGATGACTAACCAATTAA
99226710 TAACACAAAAGCATGTATAT
66 TAACACAAAAGCATGTATAT
99226730 ACA
1 ACA
99226733 TATATACATG
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 87 1.00
ACGTcount: A:0.47, C:0.24, G:0.07, T:0.21
Consensus pattern (85 bp):
ACACATTCAAAACAATCAAACTCATGGCATACATCATCCCAAAACCTAGATGACTAACCAATTAA
TAACACAAAAGCATGTATAT
Found at i:99227680 original size:12 final size:12
Alignment explanation
Indices: 99227663--99227697 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
99227653 ATTATTATAT
99227663 TTTATTTATTAA
1 TTTATTTATTAA
99227675 TTTATTTATTAA
1 TTTATTTATTAA
* *
99227687 TATATTAATTA
1 TTTATTTATTA
99227698 TGTTTATAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
TTTATTTATTAA
Found at i:99232160 original size:118 final size:113
Alignment explanation
Indices: 99231827--99232178 Score: 412
Period size: 117 Copynumber: 3.1 Consensus size: 113
99231817 TAGAAGAAGG
* * * * *
99231827 TTTTGTAGTGTTGGAAGGAGAGGAGGCAA-CATCATATAAGGGTTTCAAGGTACATTTTTA-GTT
1 TTTTGTGGTTTTGGAAAGAGAGGAGGCAAGCAT-AT-TAA-GGTTTAAAGGTACATTTTTATTTT
* * * *
99231890 TTTT-AATTCTTATTTTTTTGTTT-GTTTGTAATCCTTATTATTTGCCCTA
63 TTTTGAATTATTATTTATTTGTTTATTTTGTAATCCTTATTATTTGTCCTA
* * ** *
99231939 TTTTGCGGTTTT-AAAAGAAGAGGAGGC-AGCATATTAAGGTTTAGTGATACATTTTTAATTTTT
1 TTTTGTGGTTTTGGAAAG-AGAGGAGGCAAGCATATTAAGGTTTAAAGGTACATTTTT-ATTTTT
* *
99232002 TTTGTAATTATTATTTATTTGTTTATCTTGTAATCCTTATTATTTATCCTA
64 TTTG-AATTATTATTTATTTGTTTATTTTGTAATCCTTATTATTTGTCCTA
99232053 TTTTGTGGTTTTGGAAAGAGAGGAGGCAGTAGCATATTAAGGTTTAAAGGTACATTTTTATTTTT
1 TTTTGTGGTTTTGGAAAGAGAGGAGGCA--AGCATATTAAGGTTTAAAGGTACATTTTTA-TTTT
99232118 ATTTTGCAATTATTATTTATTTGTTTATTTTGTAATCCTTATTA-TTGTCCTA
63 -TTTTG-AATTATTATTTATTTGTTTATTTTGTAATCCTTATTATTTGTCCTA
99232170 TTTTGTGGT
1 TTTTGTGGT
99232179 ATTGTGTTGT
Statistics
Matches: 203, Mismatches: 24, Indels: 21
0.82 0.10 0.08
Matches are distributed among these distances:
109 15 0.07
110 4 0.02
111 12 0.06
112 21 0.10
113 17 0.08
114 42 0.21
115 4 0.02
116 1 0.00
117 46 0.23
118 41 0.20
ACGTcount: A:0.25, C:0.08, G:0.18, T:0.49
Consensus pattern (113 bp):
TTTTGTGGTTTTGGAAAGAGAGGAGGCAAGCATATTAAGGTTTAAAGGTACATTTTTATTTTTTT
TGAATTATTATTTATTTGTTTATTTTGTAATCCTTATTATTTGTCCTA
Found at i:99233567 original size:20 final size:19
Alignment explanation
Indices: 99233523--99233564 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
99233513 GAACAAGATT
*
99233523 AAAAGGGAGGCTGTGAATC
1 AAAAGGGAGGCTGCGAATC
99233542 AAAAGGGAGGCTGCGAATC
1 AAAAGGGAGGCTGCGAATC
99233561 AAAA
1 AAAA
99233565 AGGAAAACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.43, C:0.12, G:0.33, T:0.12
Consensus pattern (19 bp):
AAAAGGGAGGCTGCGAATC
Found at i:99236953 original size:93 final size:95
Alignment explanation
Indices: 99236782--99237096 Score: 261
Period size: 94 Copynumber: 3.3 Consensus size: 95
99236772 GGGATGAGAT
* * *
99236782 GCCAATGTCATGTCCCAGACATGGTCTTACACTAGCTAGCACAACAAAGTTGATGCCATGTCCTA
1 GCCAATG-CATGTCCCAGACA-AGTCTTACACTAGCTAGCACAACAAAGCTGACGCCATGTCCTA
99236847 AACAGGTCTTACACT-GACTT-TCATATATCGAG
64 AACAGGTCTTACACTAG-CTTGT-ATATATCGAG
99236879 GCCAATGCCATGTCCCAGACAAGTCTTACACT-GAC-A-CACAAC-AAGCTGACGCCATGTCCTA
1 GCCAATG-CATGTCCCAGACAAGTCTTACACTAG-CTAGCACAACAAAGCTGACGCCATGTCCTA
* * *
99236940 GACATGTCTTACACTAGCTTGTATATCTCGAG
64 AACAGGTCTTACACTAGCTTGTATATATCGAG
* * * * * ** * * * * * *
99236972 GCCGATGCATGTCCCAAACATGTCTTGCATTAGCTCTCGTC-TCAATGCCGATG-TATGT-CTCA
1 GCCAATGCATGTCCCAGACAAGTCTTACACTAGCTAGC-ACAACAAAGCTGACGCCATGTCCT-A
* * * *
99237034 GACATGTCTTACACTGGCTTGTATATCTCGAG
64 AACAGGTCTTACACTAGCTTGTATATATCGAG
* * *
99237066 GCCGACGCATGTCCCAGACATGTCTTACACT
1 GCCAATGCATGTCCCAGACAAGTCTTACACT
99237097 GGCTCTCATA
Statistics
Matches: 185, Mismatches: 24, Indels: 21
0.80 0.10 0.09
Matches are distributed among these distances:
92 21 0.11
93 51 0.28
94 73 0.39
95 9 0.05
96 11 0.06
97 20 0.11
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.27
Consensus pattern (95 bp):
GCCAATGCATGTCCCAGACAAGTCTTACACTAGCTAGCACAACAAAGCTGACGCCATGTCCTAAA
CAGGTCTTACACTAGCTTGTATATATCGAG
Found at i:99236993 original size:48 final size:48
Alignment explanation
Indices: 99236931--99237144 Score: 224
Period size: 46 Copynumber: 4.5 Consensus size: 48
99236921 AAGCTGACGC
*
99236931 CATGTCCTAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
* * * * ** * *
99236979 CATGTCCCAAACATGTCTTGCATTAGC-TCT-CGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
* * * *
99237025 TATGTCTCAGACATGTCTTACACTGGCTTGTATATCTCGAGGCCGACG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
* * *
99237073 CATGTCCCAGACATGTCTTACACTGGCTCT-CATA-AT--ATGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-TGTATATCTCGA-GGCCGATG
99237119 CATGTCCCAGACATGTCTTACACTAG
1 CATGTCCCAGACATGTCTTACACTAG
99237145 TACACATATC
Statistics
Matches: 135, Mismatches: 27, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
45 1 0.01
46 65 0.48
47 5 0.04
48 63 0.47
49 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.30
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
Found at i:99237045 original size:94 final size:94
Alignment explanation
Indices: 99236931--99237144 Score: 297
Period size: 94 Copynumber: 2.3 Consensus size: 94
99236921 AAGCTGACGC
* *
99236931 CATGTCCTAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGATGCATGTCCCAAACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGACGCATGTCCCAAACATGTC
* * * *
99236996 TTGCATTAGCTCTCGT-CTCAAT-GCCGATG
66 TTACACTAGCTCTCATAAT--ATGGCCGATG
* * * *
99237025 TATGTCTCAGACATGTCTTACACTGGCTTGTATATCTCGAGGCCGACGCATGTCCCAGACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGACGCATGTCCCAAACATGTC
*
99237090 TTACACTGGCTCTCATAATATGGCCGATG
66 TTACACTAGCTCTCATAATATGGCCGATG
99237119 CATGTCCCAGACATGTCTTACACTAG
1 CATGTCCCAGACATGTCTTACACTAG
99237145 TACACATATC
Statistics
Matches: 104, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
93 2 0.02
94 101 0.97
95 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.30
Consensus pattern (94 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCCGACGCATGTCCCAAACATGTC
TTACACTAGCTCTCATAATATGGCCGATG
Found at i:99239962 original size:18 final size:18
Alignment explanation
Indices: 99239939--99239974 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
99239929 TTCTTGGGTG
99239939 GTAGTCGATTATCAACTC
1 GTAGTCGATTATCAACTC
**
99239957 GTAGTCTTTTATCAACTC
1 GTAGTCGATTATCAACTC
99239975 CAACCATCTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (18 bp):
GTAGTCGATTATCAACTC
Found at i:99243446 original size:49 final size:49
Alignment explanation
Indices: 99243390--99243518 Score: 159
Period size: 49 Copynumber: 2.6 Consensus size: 49
99243380 ATCAAAGTCG
* * *
99243390 ATGCCATGTACTAGACAGGTCCTACACTGACTTTTATATATCGAGGCCA
1 ATGCCATGTCCTAGACAGGTCTTACACTGACTCTTATATATCGAGGCCA
* * * * * * *
99243439 ATGCCATGTCCTAGATAGGTCTTGCGCTGGCTCTTATATATCGATGTCG
1 ATGCCATGTCCTAGACAGGTCTTACACTGACTCTTATATATCGAGGCCA
*
99243488 ATGCCATGTCCTAGACAAGTCTTACACTGAC
1 ATGCCATGTCCTAGACAGGTCTTACACTGAC
99243519 ACACAACAAG
Statistics
Matches: 65, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
49 65 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (49 bp):
ATGCCATGTCCTAGACAGGTCTTACACTGACTCTTATATATCGAGGCCA
Found at i:99243691 original size:48 final size:48
Alignment explanation
Indices: 99243536--99243704 Score: 171
Period size: 48 Copynumber: 3.6 Consensus size: 48
99243526 AAGCTGATGC
* * * * *
99243536 CATGTCCCAAACATGTCTTACACTAGCTTGTATATCTCGAGGACGACA
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCAACG
* * *** * * *
99243584 CATGTCCCAGATATGTCTTACACTAGC-TCT-CGCCTCAATGCTAATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCAACG
* * *
99243630 CATTTCACAGACATGTCTTACACTGGCTTGTATATCTCAAGGCCAACG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCAACG
*
99243678 TATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
99243705 ACACATATCA
Statistics
Matches: 91, Mismatches: 28, Indels: 4
0.74 0.23 0.03
Matches are distributed among these distances:
46 29 0.32
47 4 0.04
48 58 0.64
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.29
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCAACG
Found at i:99248699 original size:26 final size:26
Alignment explanation
Indices: 99248670--99248777 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
99248660 TGATACAAAT
99248670 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
99248696 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
99248722 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
99248748 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
99248774 TGAT
1 TGAT
99248778 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:99250397 original size:27 final size:27
Alignment explanation
Indices: 99250366--99250505 Score: 121
Period size: 27 Copynumber: 5.2 Consensus size: 27
99250356 AGGAAGCGTC
* *
99250366 CTGGTGGCTATACCACAATTATCGGAT
1 CTGGTGGCTCTGCCACAATTATCGGAT
*
99250393 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCGGAT
* * *
99250419 CCTGATGGCTAT-CCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCGGAT
*
99250446 CTGGTGGCTCTGCCAC-ATATATC-TATT
1 CTGGTGGCTCTGCCACAAT-TATCGGA-T
*
99250473 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATC-GGAT
99250500 CTGGTG
1 CTGGTG
99250506 ACTTCGTCAC
Statistics
Matches: 95, Mismatches: 8, Indels: 20
0.77 0.07 0.16
Matches are distributed among these distances:
26 29 0.31
27 63 0.66
28 3 0.03
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCGGAT
Found at i:99250447 original size:53 final size:54
Alignment explanation
Indices: 99250363--99250505 Score: 209
Period size: 53 Copynumber: 2.7 Consensus size: 54
99250353 TAGAGGAAGC
*
99250363 GTCCTGGTGGCTATACCACAATTATCGGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATACCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
99250417 GTCCTGATGGCTAT-CCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATACCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * * *
99250470 ATTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATACCACAATTATCTG-ATCTGGTG
99250506 ACTTCGTCAC
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
53 54 0.67
54 27 0.33
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATACCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:99251622 original size:32 final size:31
Alignment explanation
Indices: 99251578--99251651 Score: 121
Period size: 32 Copynumber: 2.3 Consensus size: 31
99251568 ACATCAAGAA
*
99251578 TTTTGTTTTTTATGAAAATATGTTCTAGCAAG
1 TTTT-TTTTTTATGAAAATATGTTCTAACAAG
99251610 TTTATTTTTTTATGAAAATATGTTCTAACAAG
1 TTT-TTTTTTTATGAAAATATGTTCTAACAAG
99251642 TTTTTTTTTT
1 TTTTTTTTTT
99251652 GAATGGTATA
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
31 7 0.17
32 32 0.80
33 1 0.03
ACGTcount: A:0.27, C:0.05, G:0.11, T:0.57
Consensus pattern (31 bp):
TTTTTTTTTTATGAAAATATGTTCTAACAAG
Found at i:99256510 original size:27 final size:27
Alignment explanation
Indices: 99256479--99256584 Score: 140
Period size: 27 Copynumber: 3.9 Consensus size: 27
99256469 TAAAATTGAC
*
99256479 AAATGATTGTTTTTCCCTTATGTGGTA
1 AAATGATTGTTTTGCCCTTATGTGGTA
*
99256506 AAATGATTATTTTGCCCTTATGTGGTA
1 AAATGATTGTTTTGCCCTTATGTGGTA
*
99256533 AAATGATTGTTTTGCCCTTATGTGATA
1 AAATGATTGTTTTGCCCTTATGTGGTA
* * * * *
99256560 AGATGACTGCTTTACCCCTATGTGG
1 AAATGATTGTTTTGCCCTTATGTGG
99256585 AGTATATATA
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 69 1.00
ACGTcount: A:0.24, C:0.14, G:0.20, T:0.42
Consensus pattern (27 bp):
AAATGATTGTTTTGCCCTTATGTGGTA
Found at i:99260600 original size:29 final size:29
Alignment explanation
Indices: 99260567--99260626 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 29
99260557 TTTGGACTTG
* * *
99260567 TGTTATAGTTATCAGGCACTCTGTACCGA
1 TGTTATAGTTATAAGACACTATGTACCGA
* *
99260596 TGTTATATTTATAAGATACTATGTACCGA
1 TGTTATAGTTATAAGACACTATGTACCGA
99260625 TG
1 TG
99260627 GTGGATACCA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.38
Consensus pattern (29 bp):
TGTTATAGTTATAAGACACTATGTACCGA
Found at i:99262719 original size:22 final size:22
Alignment explanation
Indices: 99262671--99262722 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
99262661 ATTTATATTG
*
99262671 ATATACTAACATTAGGTTGTTA
1 ATATGCTAACATTAGGTTGTTA
99262693 ATATGCTAACATTAGGTTGTTA
1 ATATGCTAACATTAGGTTGTTA
99262715 ATATGCTA
1 ATATGCTA
99262723 GTTCGACTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.35, C:0.10, G:0.15, T:0.40
Consensus pattern (22 bp):
ATATGCTAACATTAGGTTGTTA
Found at i:99262784 original size:13 final size:13
Alignment explanation
Indices: 99262747--99262795 Score: 53
Period size: 13 Copynumber: 3.8 Consensus size: 13
99262737 TACATAATAT
*
99262747 GTTCACATATAGG
1 GTTCACATATAAG
** *
99262760 GTTTGCACATAAG
1 GTTCACATATAAG
99262773 GTTCACATATAAG
1 GTTCACATATAAG
*
99262786 GTTCTCATAT
1 GTTCACATAT
99262796 TGAATCACAT
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (13 bp):
GTTCACATATAAG
Found at i:99263001 original size:24 final size:23
Alignment explanation
Indices: 99262943--99263002 Score: 57
Period size: 24 Copynumber: 2.5 Consensus size: 23
99262933 ATACTTATGT
* *
99262943 ACATAAGTGTTCGCATACATATTT
1 ACATAAGT-TTCGCATACATACTC
* *
99262967 ACCTAAAGTTTCGCATACTTACTC
1 ACAT-AAGTTTCGCATACATACTC
99262991 ACATAAGGTTTC
1 ACATAA-GTTTC
99263003 ACATGTTAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
23 2 0.07
24 23 0.79
25 4 0.14
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.35
Consensus pattern (23 bp):
ACATAAGTTTCGCATACATACTC
Found at i:99263631 original size:40 final size:40
Alignment explanation
Indices: 99263582--99263668 Score: 131
Period size: 40 Copynumber: 2.2 Consensus size: 40
99263572 TTGATTTTGT
* *
99263582 TGGCCTTTTTAAATTATCATCCCAG-TTTACCCAGTTTCGA
1 TGGCATTTTTAAACTATCAT-CCAGATTTACCCAGTTTCGA
*
99263622 TGGCATTTTTAAACTATCATCCTGATTTACCCAGTTTCGA
1 TGGCATTTTTAAACTATCATCCAGATTTACCCAGTTTCGA
99263662 TGGCATT
1 TGGCATT
99263669 GCCACCTACT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
39 3 0.07
40 40 0.93
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.40
Consensus pattern (40 bp):
TGGCATTTTTAAACTATCATCCAGATTTACCCAGTTTCGA
Found at i:99266025 original size:17 final size:18
Alignment explanation
Indices: 99265991--99266027 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
99265981 GCCCATGTTG
99265991 CATGCCCATGTGGGCCCA
1 CATGCCCATGTGGGCCCA
*
99266009 CATGCCCGTGT-GGCCCA
1 CATGCCCATGTGGGCCCA
99266026 CA
1 CA
99266028 CGGCCCAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.16, C:0.41, G:0.27, T:0.16
Consensus pattern (18 bp):
CATGCCCATGTGGGCCCA
Found at i:99280794 original size:24 final size:23
Alignment explanation
Indices: 99280745--99280802 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
99280735 GATGATTTAA
*
99280745 AAAATATTCATATTTATATAATT
1 AAAATATTTATATTTATATAATT
* *
99280768 AAAATATTTATATTTTTATACTAT
1 AAAATATTTATATTTATATAAT-T
99280792 AAAATATTTAT
1 AAAATATTTAT
99280803 TATTAAAATA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
23 19 0.61
24 12 0.39
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (23 bp):
AAAATATTTATATTTATATAATT
Found at i:99280876 original size:19 final size:19
Alignment explanation
Indices: 99280845--99280894 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
99280835 TATATTAAGA
*
99280845 ATATTATTTAAAACTTAAAAT
1 ATATTA-TTAAAA-TAAAAAT
99280866 -TATTATTAAAATAAAAAT
1 ATATTATTAAAATAAAAAT
*
99280884 ATAATATTAAA
1 ATATTATTAAA
99280895 TATTTTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
18 6 0.23
19 15 0.58
20 5 0.19
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (19 bp):
ATATTATTAAAATAAAAAT
Found at i:99281895 original size:22 final size:24
Alignment explanation
Indices: 99281865--99281908 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
99281855 TTAATTTATT
*
99281865 AAATAATATATTTTTA-TAATTTC
1 AAATAATATATTTATACTAATTTC
99281888 AAAT-ATATATTTATACTAATT
1 AAATAATATATTTATACTAATT
99281909 AAATAAGGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (24 bp):
AAATAATATATTTATACTAATTTC
Found at i:99283291 original size:7 final size:7
Alignment explanation
Indices: 99283281--99283318 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
99283271 GGGGTTTAAT
*
99283281 TTTAGAA
1 TTTAGAG
99283288 TTTAGAG
1 TTTAGAG
99283295 TTTAGAG
1 TTTAGAG
*
99283302 TTTAGGG
1 TTTAGAG
99283309 TTTAGAG
1 TTTAGAG
99283316 TTT
1 TTT
99283319 GGGATTCAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.47
Consensus pattern (7 bp):
TTTAGAG
Found at i:99283396 original size:7 final size:7
Alignment explanation
Indices: 99283356--99283417 Score: 51
Period size: 7 Copynumber: 9.3 Consensus size: 7
99283346 AAGATTTAGT
99283356 TTTGA-G
1 TTTGAGG
99283362 TTTG-GG
1 TTTGAGG
*
99283368 TTTGAGTT
1 TTTGAG-G
99283376 TTTG-GG
1 TTTGAGG
*
99283382 TTTCAGG
1 TTTGAGG
99283389 TTTGAGG
1 TTTGAGG
*
99283396 TTCGAGG
1 TTTGAGG
99283403 TTT-AGG
1 TTTGAGG
*
99283409 TTTAAGG
1 TTTGAGG
99283416 TT
1 TT
99283418 AAGGGTTAGG
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
6 18 0.40
7 23 0.51
8 4 0.09
ACGTcount: A:0.13, C:0.03, G:0.35, T:0.48
Consensus pattern (7 bp):
TTTGAGG
Found at i:99283920 original size:14 final size:15
Alignment explanation
Indices: 99283896--99283934 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
99283886 TTAATACTTA
99283896 AAATAATAAATAAAT
1 AAATAATAAATAAAT
* *
99283911 TAAT-ATAAATTAAT
1 AAATAATAAATAAAT
99283925 AAATAATAAA
1 AAATAATAAA
99283935 GCAGTTATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAATAATAAATAAAT
Found at i:99289833 original size:825 final size:825
Alignment explanation
Indices: 99288244--99289897 Score: 3254
Period size: 825 Copynumber: 2.0 Consensus size: 825
99288234 TGATTGTCAA
99288244 AAGGAAGTGATGTCATTTATAAGCTTGGCATTCATATTTGGCGGATTATACCGTAACAAAAAACC
1 AAGGAAGTGATGTCATTTATAAGCTTGGCATTCATATTTGGCGGATTATACCGTAACAAAAAACC
99288309 TTTGGCAAAGGTCATCCATAATGCCACAGTCCCCGATGGAAAAACATTAAGCCACGCTCTTACTC
66 TTTGGCAAAGGTCATCCATAATGCCACAGTCCCCGATGGAAAAACATTAAGCCACGCTCTTACTC
99288374 GATCTTGAGTGCAGTCTTGGATCCTCAGTTGGTGACCCATTGAATTGTCCAACAGTTTGGAGCAT
131 GATCTTGAGTGCAGTCTTGGATCCTCAGTTGGTGACCCATTGAATTGTCCAACAGTTTGGAGCAT
99288439 ATGAAACATTACTGGTTTCTATTCAAATTGTTGAGTTTGTATGTGTGGTCTGACTATCCCTGGAT
196 ATGAAACATTACTGGTTTCTATTCAAATTGTTGAGTTTGTATGTGTGGTCTGACTATCCCTGGAT
*
99288504 TCAAGTCATCCAAAATTGGCACAACATGCTCCTAAATTAGCCTGTTTCGATCATCTATCACACCA
261 TCAAGTCATCCAAAATTGGCACAACATGCTCCTAAATTAGCCTGTTTCGATCATCTATCACACAA
99288569 TGAATAAGAAGATCAACAACCTAACCATTTGGATTTAATGGATTATTCAGACCTGGATCATTCCC
326 TGAATAAGAAGATCAACAACCTAACCATTTGGATTTAATGGATTATTCAGACCTGGATCATTCCC
*
99288634 GTCCTTTGCCATGTTATGTACTTATCTTCTCCTTCTTCGCAATGTTCTCTCGATCTCTAGGTCAA
391 GTCCTTTGCCATGTTATGTACTTATCTTCTCCTTCTTCGAAATGTTCTCTCGATCTCTAGGTCAA
99288699 AAGGATATTCTTTGTTAGTAGGAATGCTTTTATTCATACACTAATAACAACCTTATAGAAATTAA
456 AAGGATATTCTTTGTTAGTAGGAATGCTTTTATTCATACACTAATAACAACCTTATAGAAATTAA
99288764 ATACAACTAAGTTAGCTAAAACTAGTGGAATTTGTAACATCTCGAAATAGGGTCTAAATGAAATA
521 ATACAACTAAGTTAGCTAAAACTAGTGGAATTTGTAACATCTCGAAATAGGGTCTAAATGAAATA
*
99288829 GTGGTTGCGAAACCACAAATCTGAGATAGAAAAGTTTATTTTGATTAATTTTTATGATTTACCGA
586 GTGGTTGCGAAACCACAAATCTGAGATAGAAAAGTTTATTTCGATTAATTTTTATGATTTACCGA
99288894 GTGATTAGATGCATGTGTTAGAGTATTGATAAGAAATTTTATAGATTACATGTTTAATTTGCCTA
651 GTGATTAGATGCATGTGTTAGAGTATTGATAAGAAATTTTATAGATTACATGTTTAATTTGCCTA
99288959 TTAGGGCTTATTTGCAGAAGTTGCTGTAACAGCCCGATTTAGGGCCTAAACGGAACGATGGTTTT
716 TTAGGGCTTATTTGCAGAAGTTGCTGTAACAGCCCGATTTAGGGCCTAAACGGAACGATGGTTTT
99289024 AGAACCACGAATTTAAAGTAAAAAAAATTATTCGGATTAAGTTTT
781 AGAACCACGAATTTAAAGTAAAAAAAATTATTCGGATTAAGTTTT
99289069 AAGGAAGTGATGTCATTTATAAGCTTGGCATTCATATTTGGCGGATTATACCGTAACAAAAAACC
1 AAGGAAGTGATGTCATTTATAAGCTTGGCATTCATATTTGGCGGATTATACCGTAACAAAAAACC
99289134 TTTGGCAAAGGTCATCCATAATGCCACAGTCCCCGATGGAAAAACATTAAGCCACGCTCTTACTC
66 TTTGGCAAAGGTCATCCATAATGCCACAGTCCCCGATGGAAAAACATTAAGCCACGCTCTTACTC
99289199 GATCTTGAGTGCAGTCTTGGATCCTCAGTTGGTGACCCATTGAATTGTCCAACAGTTTGGAGCAT
131 GATCTTGAGTGCAGTCTTGGATCCTCAGTTGGTGACCCATTGAATTGTCCAACAGTTTGGAGCAT
99289264 ATGAAACATTACTGGTTTCTATTCAAATTGTTGAGTTTGTATGTGTGGTCTGACTATCCCTGGAT
196 ATGAAACATTACTGGTTTCTATTCAAATTGTTGAGTTTGTATGTGTGGTCTGACTATCCCTGGAT
99289329 TCAAGTCATCCAAAATTGGCACAACATGCTCCTAAATTAGCCTGTTTCGATCATCTATCACACAA
261 TCAAGTCATCCAAAATTGGCACAACATGCTCCTAAATTAGCCTGTTTCGATCATCTATCACACAA
99289394 TGAATAAGAAGATCAACAACCTAACCATTTGGATTTAATGGATTATTCAGACCTGGATCATTCCC
326 TGAATAAGAAGATCAACAACCTAACCATTTGGATTTAATGGATTATTCAGACCTGGATCATTCCC
99289459 GTCCTTTGCCATGTTATGTACTTATCTTCTCCTTCTTCGAAATGTTCTCTCGATCTCTAGGTCAA
391 GTCCTTTGCCATGTTATGTACTTATCTTCTCCTTCTTCGAAATGTTCTCTCGATCTCTAGGTCAA
99289524 AAGGATATTCTTTGTTAGTAGGAATGCTTTTATTCATACACTAATAACAACCTTATAGAAATTAA
456 AAGGATATTCTTTGTTAGTAGGAATGCTTTTATTCATACACTAATAACAACCTTATAGAAATTAA
99289589 ATACAACTAAGTTAGCTAAAACTAGTGGAATTTGTAACATCTCGAAATAGGGTCTAAATGAAATA
521 ATACAACTAAGTTAGCTAAAACTAGTGGAATTTGTAACATCTCGAAATAGGGTCTAAATGAAATA
99289654 GTGGTTGCGAAACCACAAATCTGAGATAGAAAAGTTTATTTCGATTAATTTTTATGATTTACCGA
586 GTGGTTGCGAAACCACAAATCTGAGATAGAAAAGTTTATTTCGATTAATTTTTATGATTTACCGA
*
99289719 GTGATTAGATGCATGTGTTAGAGTATTGATAAGAAATTTTATAGATTGCATGTTTAATTTGCCTA
651 GTGATTAGATGCATGTGTTAGAGTATTGATAAGAAATTTTATAGATTACATGTTTAATTTGCCTA
99289784 TTAGGGCTTATTTGCAGAAGTTGCTGTAACAGCCCGATTTAGGGCCTAAACGGAACGATGGTTTT
716 TTAGGGCTTATTTGCAGAAGTTGCTGTAACAGCCCGATTTAGGGCCTAAACGGAACGATGGTTTT
* *
99289849 AGAACCACGAATTTGAAGTCAAAAAAATTATTCGGATTAAGTTTT
781 AGAACCACGAATTTAAAGTAAAAAAAATTATTCGGATTAAGTTTT
99289894 AAGG
1 AAGG
99289898 TTTATTTATT
Statistics
Matches: 823, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
825 823 1.00
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.33
Consensus pattern (825 bp):
AAGGAAGTGATGTCATTTATAAGCTTGGCATTCATATTTGGCGGATTATACCGTAACAAAAAACC
TTTGGCAAAGGTCATCCATAATGCCACAGTCCCCGATGGAAAAACATTAAGCCACGCTCTTACTC
GATCTTGAGTGCAGTCTTGGATCCTCAGTTGGTGACCCATTGAATTGTCCAACAGTTTGGAGCAT
ATGAAACATTACTGGTTTCTATTCAAATTGTTGAGTTTGTATGTGTGGTCTGACTATCCCTGGAT
TCAAGTCATCCAAAATTGGCACAACATGCTCCTAAATTAGCCTGTTTCGATCATCTATCACACAA
TGAATAAGAAGATCAACAACCTAACCATTTGGATTTAATGGATTATTCAGACCTGGATCATTCCC
GTCCTTTGCCATGTTATGTACTTATCTTCTCCTTCTTCGAAATGTTCTCTCGATCTCTAGGTCAA
AAGGATATTCTTTGTTAGTAGGAATGCTTTTATTCATACACTAATAACAACCTTATAGAAATTAA
ATACAACTAAGTTAGCTAAAACTAGTGGAATTTGTAACATCTCGAAATAGGGTCTAAATGAAATA
GTGGTTGCGAAACCACAAATCTGAGATAGAAAAGTTTATTTCGATTAATTTTTATGATTTACCGA
GTGATTAGATGCATGTGTTAGAGTATTGATAAGAAATTTTATAGATTACATGTTTAATTTGCCTA
TTAGGGCTTATTTGCAGAAGTTGCTGTAACAGCCCGATTTAGGGCCTAAACGGAACGATGGTTTT
AGAACCACGAATTTAAAGTAAAAAAAATTATTCGGATTAAGTTTT
Found at i:99292750 original size:39 final size:39
Alignment explanation
Indices: 99292706--99293019 Score: 504
Period size: 39 Copynumber: 8.1 Consensus size: 39
99292696 ATTATATTAT
* *
99292706 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
99292745 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATAC-TTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
99292783 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
99292822 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
99292861 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
99292900 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * * *
99292939 CAGCACGAAGCCTGTGGGACTTTGGCCCAGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
99292978 CAACACGAAGCCTGTGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
99293017 CAG
1 CAG
99293020 TTCTTGCATA
Statistics
Matches: 257, Mismatches: 17, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
38 37 0.14
39 220 0.86
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:99299826 original size:68 final size:66
Alignment explanation
Indices: 99299754--99299901 Score: 174
Period size: 67 Copynumber: 2.2 Consensus size: 66
99299744 CATCATGTGT
* * * *
99299754 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTACG-G-CA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
99299817 TGTAG
62 TGTAG
* * *
99299822 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGGCATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
99299887 AG
65 AG
99299889 ACAAGAGAGCTAC
1 ACAAGAGAGCTAC
99299902 AGATAAACTG
Statistics
Matches: 70, Mismatches: 7, Indels: 7
0.83 0.08 0.08
Matches are distributed among these distances:
64 24 0.34
65 3 0.04
66 3 0.04
67 26 0.37
68 14 0.20
ACGTcount: A:0.31, C:0.18, G:0.30, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGGCATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:99302398 original size:4 final size:4
Alignment explanation
Indices: 99302389--99302427 Score: 69
Period size: 4 Copynumber: 9.8 Consensus size: 4
99302379 AATGAACTTA
*
99302389 ATAC ATAC ATAC ATAC ATAC GTAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
99302428 TACCAAAACA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.49, C:0.23, G:0.03, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:99302614 original size:16 final size:16
Alignment explanation
Indices: 99302593--99302629 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
99302583 ACCTCCTCCA
99302593 AGCTTCCAATCCAATG
1 AGCTTCCAATCCAATG
99302609 AGCTTCCAATCCAATG
1 AGCTTCCAATCCAATG
99302625 AGCTT
1 AGCTT
99302630 TCGATTTACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.27
Consensus pattern (16 bp):
AGCTTCCAATCCAATG
Found at i:99304304 original size:51 final size:51
Alignment explanation
Indices: 99304249--99304345 Score: 160
Period size: 51 Copynumber: 1.9 Consensus size: 51
99304239 TGAACCTTAG
* *
99304249 GAATAAAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGTCCACTTTGT
1 GAATAAAATAGCTTTGG-CTACAAGGGTGGTACTATGTGAAGGCCACTTTGT
99304300 GAATAAAATAGCTTTGGCTACAAGGGTGGTACTATGTGAAGGCCAC
1 GAATAAAATAGCTTTGGCTACAAGGGTGGTACTATGTGAAGGCCAC
99304346 CGTGTATCCG
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
50 1 0.02
51 42 0.98
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGCTACAAGGGTGGTACTATGTGAAGGCCACTTTGT
Found at i:99305452 original size:48 final size:48
Alignment explanation
Indices: 99305367--99305498 Score: 138
Period size: 48 Copynumber: 2.8 Consensus size: 48
99305357 TGATTAACGA
* *
99305367 GATCCCGTGTAAGACCATGTCCGGGACATAGCATCGGCATCGATATGC
1 GATCCCGTGTAAGACCATATCAGGGACATAGCATCGGCATCGATATGC
* * * * * *
99305415 GATCCTGTGTAAGACCATATCAGGGATATGGCTTCGGCATCGATAAGT
1 GATCCCGTGTAAGACCATATCAGGGACATAGCATCGGCATCGATATGC
** * * * *
99305463 GATTTCGTATAAGACCATGTCTGGGACATGGCATCG
1 GATCCCGTGTAAGACCATATCAGGGACATAGCATCG
99305499 ATATGAGGTC
Statistics
Matches: 68, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
48 68 1.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (48 bp):
GATCCCGTGTAAGACCATATCAGGGACATAGCATCGGCATCGATATGC
Found at i:99305536 original size:90 final size:90
Alignment explanation
Indices: 99305402--99305635 Score: 265
Period size: 90 Copynumber: 2.6 Consensus size: 90
99305392 ACATAGCATC
* * * * * * * *
99305402 GGCATCGATATGCGATCCTGTGTAAGACCATATCAGGGATATGGCTTCGGCATCGATAAGTGA-T
1 GGCATCGATATGAGGTCCCGTGTAAGACCATGTCTGGGACATGGCTTCGGCACCGATAAGAGACT
*
99305466 TTCGTATAAGACCATGTCTGGGACAT
66 TT-GTATAAGACCATATCTGGGACAT
* * **
99305492 GGCATCGATATGAGGTCCCGTTTAAGACCATGTCTGGGACATGGCGTCGGCACCGATTCGAGACT
1 GGCATCGATATGAGGTCCCGTGTAAGACCATGTCTGGGACATGGCTTCGGCACCGATAAGAGACT
*
99305557 TTGTATAAGACCATATCTGGGATAT
66 TTGTATAAGACCATATCTGGGACAT
* * * * *
99305582 GACATCGATGTGTA-GTTCCATGTAAGACCATGTCTGGGACATGGCTTTGGCACC
1 GGCATCGATATG-AGGTCCCGTGTAAGACCATGTCTGGGACATGGCTTCGGCACC
99305636 CTATTTGGTG
Statistics
Matches: 121, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
90 117 0.97
91 4 0.03
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (90 bp):
GGCATCGATATGAGGTCCCGTGTAAGACCATGTCTGGGACATGGCTTCGGCACCGATAAGAGACT
TTGTATAAGACCATATCTGGGACAT
Found at i:99311324 original size:33 final size:32
Alignment explanation
Indices: 99311275--99311338 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
99311265 CTCGTTACAA
* *
99311275 TCTGGTGGCTTCGCCACATATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
*
99311308 TCTGGTGGCCTAGCCACAATATCTATATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
99311339 GTGACTTCGT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 12 0.43
33 16 0.57
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:99315604 original size:40 final size:41
Alignment explanation
Indices: 99315553--99315785 Score: 305
Period size: 40 Copynumber: 5.8 Consensus size: 41
99315543 ATTTGAATTT
* * *
99315553 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGATTT
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATTA
*
99315593 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATTA
* *
99315633 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGAT-TA
*
99315675 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATTA
* *
99315715 TATCCTGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTGATTA
** *
99315755 TGCCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
99315786 TTGTGGTAAT
Statistics
Matches: 173, Mismatches: 14, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
39 3 0.02
40 127 0.73
41 6 0.03
42 37 0.21
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (41 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATTA
Found at i:99315698 original size:82 final size:81
Alignment explanation
Indices: 99315553--99315785 Score: 326
Period size: 82 Copynumber: 2.9 Consensus size: 81
99315543 ATTTGAATTT
* * * *
99315553 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGATTTTATCCGGGCTAAGACCCGAAGGCA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATTATATCCGGGCTAAGACCCGAAGGCA
* *
99315617 TTTGTGCGAGTTGATA
66 ATTGTGCAAGTTGATA
*
99315633 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATATCCGGGCTAAGACCCGAAGGC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT-TATATCCGGGCTAAGACCCGAAGGC
99315698 AATTGTGCAAGTTGATA
65 AATTGTGCAAGTTGATA
* * * ** *
99315715 TATCCTGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-CTATGCCCGGGTTAAGACCCGAAGGCA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATTATATCCGGGCTAAGACCCGAAGGCA
99315779 ATTGTGC
66 ATTGTGC
99315786 TTGTGGTAAT
Statistics
Matches: 137, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
80 60 0.44
81 4 0.03
82 73 0.53
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (81 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCAAGTTGATA
Found at i:99315770 original size:122 final size:122
Alignment explanation
Indices: 99315553--99315785 Score: 351
Period size: 122 Copynumber: 1.9 Consensus size: 122
99315543 ATTTGAATTT
* * *
99315553 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATATCCGGGCTAAGACCCGAAGGCAT
* * * *
99315618 TTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATA
66 TCGTGCGAGTTGATATACCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATATA
*
99315675 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGA-TATATCCTGGCTAAGACCCGAAGGCA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAG-TGATTATATCCGGGCTAAGACCCGAAGGCA
* * *
99315739 TTCGTGCGAGTTGCTATGCCCGGGTTAAGACCCGAAGGCAATTGTGC
65 TTCGTGCGAGTTGATATACCCGGGCTAAGACCCGAAGGCAATTGTGC
99315786 TTGTGGTAAT
Statistics
Matches: 99, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
122 96 0.97
123 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (122 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATATCCGGGCTAAGACCCGAAGGCAT
TCGTGCGAGTTGATATACCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATATA
Found at i:99319538 original size:19 final size:21
Alignment explanation
Indices: 99319500--99319538 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
99319490 GAACAGTGAG
*
99319500 AGAGTTCTGTGTTACCGAAGT
1 AGAGTTCTGTATTACCGAAGT
99319521 AGAGTT-TGTATT-CCGAAG
1 AGAGTTCTGTATTACCGAAG
99319539 GACTCTGACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 5 0.29
21 6 0.35
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (21 bp):
AGAGTTCTGTATTACCGAAGT
Found at i:99321920 original size:29 final size:29
Alignment explanation
Indices: 99321879--99321935 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
99321869 AAGAGGTGGG
99321879 AAAAGAGAGGTGGGTAAGCTACAAAGCTA
1 AAAAGAGAGGTGGGTAAGCTACAAAGCTA
*
99321908 AAAAGAGAGGTGGGTAAGCTATAAAGCT
1 AAAAGAGAGGTGGGTAAGCTACAAAGCT
99321936 TAGTAACTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.44, C:0.09, G:0.32, T:0.16
Consensus pattern (29 bp):
AAAAGAGAGGTGGGTAAGCTACAAAGCTA
Found at i:99332709 original size:6 final size:6
Alignment explanation
Indices: 99332691--99332787 Score: 74
Period size: 6 Copynumber: 15.8 Consensus size: 6
99332681 AAGAAACATT
* *
99332691 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * * *
99332740 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ACCAGT ATCAG
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAG
99332788 GTAACAGAAT
Statistics
Matches: 72, Mismatches: 11, Indels: 16
0.73 0.11 0.16
Matches are distributed among these distances:
5 4 0.06
6 60 0.83
7 6 0.08
8 2 0.03
ACGTcount: A:0.46, C:0.16, G:0.19, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:99332736 original size:31 final size:31
Alignment explanation
Indices: 99332675--99332797 Score: 151
Period size: 31 Copynumber: 4.0 Consensus size: 31
99332665 TAACCAATTA
* * *
99332675 CAGAATAAGAAACATTATCA-G-AACTAGAAT
1 CAGAATCAGAATCAGTATCAGGTAAC-AGAAT
* * *
99332705 CAGAATCAGAATCAGAATTAGGTGACAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
99332736 CAGAATCAGAATCAGTATCAGGTAACAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
* *
99332767 CAAAATCAGAACCAGTATCAGGTAACAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
99332798 AAAAAATGAG
Statistics
Matches: 80, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
30 15 0.19
31 63 0.79
32 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (31 bp):
CAGAATCAGAATCAGTATCAGGTAACAGAAT
Found at i:99332981 original size:27 final size:26
Alignment explanation
Indices: 99332939--99333040 Score: 132
Period size: 27 Copynumber: 3.8 Consensus size: 26
99332929 GCTCAGTTAT
* *
99332939 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
99332966 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
99332992 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
99333020 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
99333041 TTAACAGAAT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
26 7 0.10
27 53 0.78
28 8 0.12
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:99333226 original size:22 final size:22
Alignment explanation
Indices: 99333198--99333262 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
99333188 GCAAATACGT
*
99333198 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* * *
99333220 TTGGCACAGAGCTAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
* *
99333242 TTGACAGAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
99333263 AAGGCTTTAA
Statistics
Matches: 33, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
21 2 0.06
22 29 0.88
23 2 0.06
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:99333745 original size:27 final size:27
Alignment explanation
Indices: 99333689--99334116 Score: 529
Period size: 27 Copynumber: 16.3 Consensus size: 27
99333679 GGGGCAAAAT
* * *
99333689 GGTAATTTTACCC-ACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
99333714 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
99333741 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
99333768 GGTAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
99333795 GATAA-T-T---CT----GGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
99333813 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
99333840 GATAATTCTACCCTACAGGGGGTATTTC
1 GGTAATTCTACCCTACA-GGGGTATTTC
* *
99333868 GATAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
99333895 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
99333922 AGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
99333949 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
99333976 GATGATTCTACCCTATAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
99334003 GATAATT-TACCCTATAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
99334029 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
99334056 AATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
99334083 GGTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
99334110 GGTAATT
1 GGTAATT
99334117 TTGTAAATCG
Statistics
Matches: 355, Mismatches: 35, Indels: 24
0.86 0.08 0.06
Matches are distributed among these distances:
18 12 0.03
19 1 0.00
20 1 0.00
22 2 0.01
23 2 0.01
25 13 0.04
26 29 0.08
27 269 0.76
28 26 0.07
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:99333809 original size:18 final size:18
Alignment explanation
Indices: 99333786--99333821 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
99333776 TACCCTACAG
99333786 GGGTATTGCGATAATTCT
1 GGGTATTGCGATAATTCT
* *
99333804 GGGTATTTCGGTAATTCT
1 GGGTATTGCGATAATTCT
99333822 ACCCTACAGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.19, C:0.11, G:0.28, T:0.42
Consensus pattern (18 bp):
GGGTATTGCGATAATTCT
Found at i:99333823 original size:45 final size:45
Alignment explanation
Indices: 99333759--99333848 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
99333749 TACCCTACAG
99333759 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTGCGATAATTCT
1 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTGCGATAATTCT
*
99333804 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCT
1 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTGCGATAATTCT
99333849 ACCCTACAGG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.22, C:0.18, G:0.23, T:0.37
Consensus pattern (45 bp):
GGGTATTTCGGTAATTCTACCCTACAGGGGTATTGCGATAATTCT
Found at i:99334077 original size:134 final size:136
Alignment explanation
Indices: 99333804--99334108 Score: 488
Period size: 134 Copynumber: 2.3 Consensus size: 136
99333794 CGATAATTCT
*
99333804 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGGTATTTCG
1 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGGTATTGCG
* * * *
99333869 ATAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTTTACC
66 ATAATTCTACCCTACAGGGGTATTGCAGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACC
99333934 CTACAG
131 CTACAG
* *
99333940 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATGATTCTACCCTATA-GGGGTATTGCG
1 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGGTATTGCG
* *
99334004 ATAATT-TACCCTATAGGGGTATTGCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACC
66 ATAATTCTACCCTACAGGGGTATTGCAGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACC
99334068 CTACAG
131 CTACAG
* * *
99334074 GGGTATTTTGGTATTTCTACCCTACAAGGGTATTT
1 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
99334109 TGGTAATTTT
Statistics
Matches: 157, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
134 90 0.57
135 16 0.10
136 51 0.32
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (136 bp):
GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGGTATTGCG
ATAATTCTACCCTACAGGGGTATTGCAGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACC
CTACAG
Found at i:99334130 original size:27 final size:27
Alignment explanation
Indices: 99334098--99334468 Score: 336
Period size: 27 Copynumber: 13.7 Consensus size: 27
99334088 TTCTACCCTA
**
99334098 CAAGGGTATTTTGGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *** **
99334125 CGAGGGTAAAATGGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
99334152 CAAGGGTACTTTGGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *** **
99334179 TAAGGGTATTTCAATAATTTTACAGGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* ** *
99334206 CGAGGGTATTTCAGTAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
99334233 CAGGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
99334259 CTAGGGGTATTTTGATAATTTTACAAAC
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* *
99334287 CAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
99334314 CAGGGGTATTTTGGTAATTTTATAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
99334340 CAAAGGGTATTTTAGTAATTTTACAAAT
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* * ** *
99334368 TAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
99334395 CAAGGGTATTTTAGTAATTTTATAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
99334421 CTAAGGGTATTTTAGTAATTTTACAAA-
1 C-AAGGGTATTTTGGTAATTTTACAAAT
*
99334448 CTAGGGGTATTTTGGTAATTT
1 C-AAGGGTATTTTGGTAATTT
99334469 GGTAAATTAA
Statistics
Matches: 292, Mismatches: 47, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
26 3 0.01
27 288 0.99
28 1 0.00
ACGTcount: A:0.32, C:0.07, G:0.21, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:99334184 original size:81 final size:82
Alignment explanation
Indices: 99334074--99334468 Score: 376
Period size: 81 Copynumber: 4.9 Consensus size: 82
99334064 TACCCTACAG
** * ** **
99334074 GGGTATTTTGGT-ATTTCTACCCTAC-AAGGGTATTTTGGTAATTTTGTAAATCGA-GGGTAAAA
1 GGGTATTTTGGTAATTT-TA-CAAACTAAGGGTATTTTAGTAATTTTACAAATCGAGGGGTAATT
** *
99334136 TGGTAATTTTGTAAATCAA
64 TGGTAATTTTACAAACCAA
* ** * * **
99334155 GGGTACTTTGGTAATTTTACAAGTTAAGGGTATTTCAATAATTTTACAGGTCGA-GGGT-ATTTC
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTACAAATCGAGGGGTAATTT-
* * * *
99334218 AGTAATTTCACAAATCAG
65 GGTAATTTTACAAACCAA
* * *
99334236 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTT-GATAATTTTACAAA-CCAGGGGTATTTT
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAG-TAATTTTACAAATCGAGGGGTAATTT
*
99334299 GGTAATTTTACAAACCAG
65 GGTAATTTTACAAACCAA
* * * *
99334317 GGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAAT-TAGGGGTATTTTG
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTACAAATCGAGGGGTAATTTG
**
99334381 GTAATTTTGTAAACCAA
66 GTAATTTTACAAACCAA
* * * *
99334398 GGGTATTTTAGTAATTTTATAAACTAAGGGTATTTTAGTAATTTTACAAA-CTAGGGGTATTTTG
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTACAAATCGAGGGGTAATTTG
99334462 GTAATTT
66 GTAATTT
99334469 GGTAAATTAA
Statistics
Matches: 264, Mismatches: 41, Indels: 18
0.82 0.13 0.06
Matches are distributed among these distances:
80 5 0.02
81 251 0.95
82 8 0.03
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (82 bp):
GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTACAAATCGAGGGGTAATTTG
GTAATTTTACAAACCAA
Found at i:99334474 original size:81 final size:81
Alignment explanation
Indices: 99334136--99334474 Score: 403
Period size: 81 Copynumber: 4.2 Consensus size: 81
99334126 GAGGGTAAAA
* * ** * *
99334136 TGGTAATTTTGTAAATCAAGGGTACTTTGGTAATTTTACAAGTTAAGGGTATTTCAATAATTTTA
1 TGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTA
** *
99334201 C-AGGTCGAGGGTATTT
66 CAAACTAG-GGGTATTT
** *** * * *
99334217 CAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTT-GATAATTTT
1 TGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAG-TAATTTT
*
99334281 ACAAACCAGGGGTATTT
65 ACAAACTAGGGGTATTT
** * * *
99334298 TGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTA
1 TGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTA
*
99334363 CAAATTAGGGGTATTT
66 CAAACTAGGGGTATTT
* *
99334379 TGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTATAAACTAAGGGTATTTTAGTAATTTTA
1 TGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTA
99334444 CAAACTAGGGGTATTT
66 CAAACTAGGGGTATTT
*
99334460 TGGTAATTTGGTAAA
1 TGGTAATTTTGTAAA
99334475 TTAAAGTATT
Statistics
Matches: 223, Mismatches: 32, Indels: 6
0.85 0.12 0.02
Matches are distributed among these distances:
81 220 0.99
82 3 0.01
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.40
Consensus pattern (81 bp):
TGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTA
CAAACTAGGGGTATTT
Found at i:99340483 original size:40 final size:40
Alignment explanation
Indices: 99340402--99340619 Score: 314
Period size: 40 Copynumber: 5.5 Consensus size: 40
99340392 CAACCAAGTA
** * *
99340402 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGAAATAG-TAACTCGCACAAATG
* ** *
99340441 CCTTCGGGACTTAGCCTGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
99340481 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
99340521 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
** *
99340561 CCTTCGGGACTTAGCTTGGAAATAGTAACTCGCACAAATA
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
99340601 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
99340620 TTATCATCCG
Statistics
Matches: 162, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 13 0.08
40 149 0.92
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
Found at i:99348680 original size:40 final size:40
Alignment explanation
Indices: 99348625--99348776 Score: 223
Period size: 40 Copynumber: 3.8 Consensus size: 40
99348615 AGATATAGCT
* **
99348625 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAATAGTA
** * * *
99348665 ACTCTTACAATTGCCTTCGGGACTTAGCTCGAAAATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAATAGTA
*
99348705 ACTCGCACAAATGCCTTCGGGACTTAGCTCGGAAATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAATAGTA
99348745 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
99348777 TTATCATCCG
Statistics
Matches: 99, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 99 1.00
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAATAGTA
Found at i:99350617 original size:29 final size:28
Alignment explanation
Indices: 99350581--99350658 Score: 95
Period size: 29 Copynumber: 2.7 Consensus size: 28
99350571 TCATGAGATT
99350581 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
* *
99350611 -GCACTAAGTGTGTGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
99350638 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
99350659 GATTATTAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
27 5 0.12
29 33 0.80
30 3 0.07
ACGTcount: A:0.26, C:0.13, G:0.31, T:0.31
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:99350878 original size:145 final size:145
Alignment explanation
Indices: 99350636--99350909 Score: 512
Period size: 145 Copynumber: 1.9 Consensus size: 145
99350626 GTTTAAAGTA
*
99350636 CATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
1 CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
* *
99350701 ATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAGTG
66 ATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGTG
99350766 TGCGAACTTGAAATG
131 TGCGAACTTGAAATG
99350781 CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
1 CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
*
99350846 ATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGT
66 ATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGT
99350910 ACCTTGAGTT
Statistics
Matches: 125, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
145 125 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (145 bp):
CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
ATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGTG
TGCGAACTTGAAATG
Found at i:99358719 original size:29 final size:28
Alignment explanation
Indices: 99358683--99358760 Score: 95
Period size: 29 Copynumber: 2.7 Consensus size: 28
99358673 TCATGAGATT
99358683 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
* *
99358713 -GCACTAAGTGTGTGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
99358740 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
99358761 GATTATTAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
27 5 0.12
29 33 0.80
30 3 0.07
ACGTcount: A:0.26, C:0.13, G:0.31, T:0.31
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:99358980 original size:145 final size:145
Alignment explanation
Indices: 99358738--99359011 Score: 503
Period size: 145 Copynumber: 1.9 Consensus size: 145
99358728 GTTTAAAGTA
*
99358738 CATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
1 CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
* * *
99358803 GTAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAGTG
66 ATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGTG
99358868 TGCGAACTTGAAATG
131 TGCGAACTTGAAATG
99358883 CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
1 CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
*
99358948 ATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGT
66 ATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGT
99359012 ACCTCGAGTT
Statistics
Matches: 124, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
145 124 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (145 bp):
CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
ATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGTG
TGCGAACTTGAAATG
Found at i:99363743 original size:42 final size:43
Alignment explanation
Indices: 99363593--99363750 Score: 144
Period size: 42 Copynumber: 3.7 Consensus size: 43
99363583 TATGTGTTTT
* * *
99363593 CATGTAAGACCACGTCTGGGACGTTGGAATCGACT-TATGATTTA
1 CATGTAAGACCACGTCTGGGACATTGGCATCGA-TATTTGA-TTA
* * * ** *
99363637 CGTGTAAGATCACGTCTGGGACGTTGGC-TTTATATTTGATTT
1 CATGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTA
* * *
99363679 CGTGTAAGACC-CTGTCTAGGACAATGGCATCGATATTTG-TTA
1 CATGTAAGACCAC-GTCTGGGACATTGGCATCGATATTTGATTA
*
99363721 CATGTAAGACCACGTCTGGGACATTAGCAT
1 CATGTAAGACCACGTCTGGGACATTGGCAT
99363751 TGTATGAGCT
Statistics
Matches: 92, Mismatches: 18, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
41 1 0.01
42 51 0.55
43 15 0.16
44 25 0.27
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (43 bp):
CATGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTA
Found at i:99364812 original size:54 final size:54
Alignment explanation
Indices: 99364753--99364866 Score: 156
Period size: 54 Copynumber: 2.1 Consensus size: 54
99364743 GCTGTGTGGG
* * * *
99364753 AAGTCAATTTTGACGACGAGCTAGACACACGAGTGTGTGGTCAGCAGTTTGGCC
1 AAGTCAATTTCGACCACGAGCTAGACACACGAGTGTGTGGTCAGCAGTGTGGAC
* * * *
99364807 AAGTCAGTTTCGACCAGGGGCTAGACACACGAGTGTGTGGTCAGCTGTGTGGAC
1 AAGTCAATTTCGACCACGAGCTAGACACACGAGTGTGTGGTCAGCAGTGTGGAC
99364861 AAGTCA
1 AAGTCA
99364867 GTATGTATGC
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.23
Consensus pattern (54 bp):
AAGTCAATTTCGACCACGAGCTAGACACACGAGTGTGTGGTCAGCAGTGTGGAC
Found at i:99372041 original size:31 final size:31
Alignment explanation
Indices: 99372003--99372066 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
99371993 TAGGTTGTGT
99372003 AGTAGTACACGGCCATGTGGTCAACGAACTA
1 AGTAGTACACGGCCATGTGGTCAACGAACTA
* * *
99372034 AGTAGTACACGGTCGTGTGGTCGACGAACTA
1 AGTAGTACACGGCCATGTGGTCAACGAACTA
99372065 AG
1 AG
99372067 CTGTACGCAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.30, C:0.20, G:0.30, T:0.20
Consensus pattern (31 bp):
AGTAGTACACGGCCATGTGGTCAACGAACTA
Found at i:99382454 original size:17 final size:18
Alignment explanation
Indices: 99382429--99382467 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
99382419 AGGCCAATTT
99382429 GGGCCTGTGGG-CCACAC
1 GGGCCTGTGGGCCCACAC
*
99382446 GGGCGTGTGGGCCCACAC
1 GGGCCTGTGGGCCCACAC
99382464 GGGC
1 GGGC
99382468 AGGCCACATG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.10, C:0.33, G:0.46, T:0.10
Consensus pattern (18 bp):
GGGCCTGTGGGCCCACAC
Found at i:99394878 original size:21 final size:22
Alignment explanation
Indices: 99394854--99394894 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
99394844 TTGCCTTCTG
99394854 TTCTTTCT-TTTA-TTATTTTGT
1 TTCTTT-TATTTATTTATTTTGT
99394875 TTCTTTTATTTATTTATTTT
1 TTCTTTTATTTATTTATTTT
99394895 ACTTTATGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 1 0.06
21 10 0.56
22 7 0.39
ACGTcount: A:0.12, C:0.07, G:0.02, T:0.78
Consensus pattern (22 bp):
TTCTTTTATTTATTTATTTTGT
Found at i:99426499 original size:43 final size:43
Alignment explanation
Indices: 99426373--99426517 Score: 161
Period size: 42 Copynumber: 3.4 Consensus size: 43
99426363 ATGTGTTATT
* * *
99426373 GTGTAAGACCACGTCTGGGA-TGTTGGCATTGAT-TTGTGATTTAC
1 GTGTAAGACCATGTCTGGGACAG-TGGCATCGATATT-TGATTT-C
* *
99426417 GTGTAAGACCATGTCTGGGACATTGGCATCG-TATATGATTTC
1 GTGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGATTTC
* * *
99426459 GTGTAAGACCCTGTTTGGGACAGTGGCATCGATATTTGATTAC
1 GTGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGATTTC
*
99426502 ATGTAAGACCATGTCT
1 GTGTAAGACCATGTCT
99426518 ATGACGTTGG
Statistics
Matches: 85, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
42 29 0.34
43 29 0.34
44 27 0.32
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.34
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGATTTC
Found at i:99426529 original size:43 final size:43
Alignment explanation
Indices: 99426373--99426530 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 43
99426363 ATGTGTTATT
* * *
99426373 GTGTAAGACCACGTCTGGGATGTTGGCATTGAT-TTGTGATTTAC
1 GTGTAAGACCATGTCTGGGACGTTGGCATCGATATT-TGA-TTAC
* * *
99426417 GTGTAAGACCATGTCTGGGACATTGGCATCG-TATATGATTTC
1 GTGTAAGACCATGTCTGGGACGTTGGCATCGATATTTGATTAC
* *
99426459 GTGTAAGACCCTGTTTGGGACAG-TGGCATCGATATTTGATTAC
1 GTGTAAGACCATGTCTGGGAC-GTTGGCATCGATATTTGATTAC
* **
99426502 ATGTAAGACCATGTCTATGACGTTGGCAT
1 GTGTAAGACCATGTCTGGGACGTTGGCAT
99426531 TGTACGAGCT
Statistics
Matches: 94, Mismatches: 16, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
42 31 0.33
43 35 0.37
44 28 0.30
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.34
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACGTTGGCATCGATATTTGATTAC
Found at i:99430788 original size:27 final size:27
Alignment explanation
Indices: 99430758--99430846 Score: 74
Period size: 27 Copynumber: 3.2 Consensus size: 27
99430748 TTTTCATTAA
99430758 TTTACACTACAAGGGTATTTGAGTAAT
1 TTTACACTACAAGGGTATTTGAGTAAT
* ** * *
99430785 TTTACAAAATTGAGGGGCATTTTG-GTAAT
1 TTTAC--ACTACAAGGGTA-TTTGAGTAAT
*
99430814 TTTACACTATAAGGGTATTTCGA-TAAT
1 TTTACACTACAAGGGTATTT-GAGTAAT
99430841 TTTACA
1 TTTACA
99430847 AACTGAGGTC
Statistics
Matches: 47, Mismatches: 10, Indels: 10
0.70 0.15 0.15
Matches are distributed among these distances:
26 3 0.06
27 23 0.49
29 17 0.36
30 4 0.09
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (27 bp):
TTTACACTACAAGGGTATTTGAGTAAT
Found at i:99454121 original size:79 final size:81
Alignment explanation
Indices: 99454012--99454194 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
99454002 TACTCGTTCA
* *
99454012 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
99454075 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
99454092 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
99454155 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
99454171 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
99454195 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:99454194 original size:40 final size:40
Alignment explanation
Indices: 99453991--99454194 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
99453981 CAGAATTTAA
** *
99453991 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
99454031 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
99454071 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
99454110 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
99454150 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
99454190 CCGGA
1 CCGGA
99454195 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:99454836 original size:33 final size:35
Alignment explanation
Indices: 99454794--99454871 Score: 124
Period size: 33 Copynumber: 2.3 Consensus size: 35
99454784 GGCTACCTAT
99454794 GAACATACACATAACTTATGTACT-TACA-TGGCC
1 GAACATACACATAACTTATGTACTATACAGTGGCC
*
99454827 GAACATACACATAACTTATGTACTATTCATGTGGCC
1 GAACATACACATAACTTATGTACTATACA-GTGGCC
99454863 GAACATACA
1 GAACATACA
99454872 TGTCTATGTT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
33 24 0.59
34 3 0.07
36 14 0.34
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (35 bp):
GAACATACACATAACTTATGTACTATACAGTGGCC
Found at i:99455510 original size:22 final size:22
Alignment explanation
Indices: 99455461--99455515 Score: 62
Period size: 21 Copynumber: 2.5 Consensus size: 22
99455451 AAAGGATGGA
99455461 CACATTTT-TTTCTTTTGTTTT
1 CACATTTTCTTTCTTTTGTTTT
*
99455482 CATCATTTTCTTTCTCTTTTTTTT
1 CA-CATTTTCTTTCT-TTTGTTTT
99455506 C-CA-TTTCTTT
1 CACATTTTCTTT
99455516 ATTACTAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
21 9 0.30
22 8 0.27
23 5 0.17
24 8 0.27
ACGTcount: A:0.09, C:0.20, G:0.02, T:0.69
Consensus pattern (22 bp):
CACATTTTCTTTCTTTTGTTTT
Found at i:99462069 original size:40 final size:40
Alignment explanation
Indices: 99462019--99462169 Score: 168
Period size: 40 Copynumber: 3.8 Consensus size: 40
99462009 TCGGAATTTA
**
99462019 ACCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAG
1 ACCGGATATAG-TAACTCGCACAAATGCCTTCGGGACATAG
* *
99462059 ACCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTA-
1 ACCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAG
* * *
99462098 ACCCGGATTTAGTAACTCGCACCAATGCCTT-GGG-CTTAG
1 A-CCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAG
*
99462137 CCCGGA-ATTAGTAACTCGCACAAATGCCTTCGG
1 ACCGGATA-TAGTAACTCGCACAAATGCCTTCGG
99462170 ATCTTAGTCC
Statistics
Matches: 96, Mismatches: 10, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
38 30 0.31
39 7 0.07
40 59 0.61
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
ACCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAG
Found at i:99462150 original size:38 final size:40
Alignment explanation
Indices: 99462039--99462169 Score: 171
Period size: 40 Copynumber: 3.3 Consensus size: 40
99462029 GCTACTCGTT
* *
99462039 CAAATGCCTTCGGGACATAGA-CCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTA-ACCCGGAAT-TAGTAACTCGCA
*
99462079 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
* *
99462119 CCAATGCCTT-GGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
99462157 CAAATGCCTTCGG
1 CAAATGCCTTCGG
99462170 ATCTTAGTCC
Statistics
Matches: 83, Mismatches: 5, Indels: 7
0.87 0.05 0.07
Matches are distributed among these distances:
38 32 0.39
39 6 0.07
40 43 0.52
41 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
Found at i:99462206 original size:78 final size:80
Alignment explanation
Indices: 99462067--99462222 Score: 203
Period size: 78 Copynumber: 2.0 Consensus size: 80
99462057 AGACCGGTTA
* * *
99462067 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCC-TTGG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACCAAGGCCTTTGG
99462131 G-CTTAGCCCGGAAT
66 GACTTAGCCCGGAAT
** * *
99462145 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA-CAAGGCCTTT
1 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAGTAAC-TAGCACCAAGGCCTTT
99462208 GGGACTTAGCCCGGA
64 GGGACTTAGCCCGGA
99462223 CATCATTCGA
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
77 3 0.04
78 44 0.66
79 9 0.13
80 11 0.16
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACCAAGGCCTTTGG
GACTTAGCCCGGAAT
Found at i:99462870 original size:37 final size:37
Alignment explanation
Indices: 99462820--99462907 Score: 176
Period size: 37 Copynumber: 2.4 Consensus size: 37
99462810 AGGCTACCTA
99462820 TGGCCGAACATACACATAACTTATGTACTTATTCATG
1 TGGCCGAACATACACATAACTTATGTACTTATTCATG
99462857 TGGCCGAACATACACATAACTTATGTACTTATTCATG
1 TGGCCGAACATACACATAACTTATGTACTTATTCATG
99462894 TGGCCGAACATACA
1 TGGCCGAACATACA
99462908 TGTCTATGTT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 51 1.00
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.30
Consensus pattern (37 bp):
TGGCCGAACATACACATAACTTATGTACTTATTCATG
Found at i:99463536 original size:24 final size:24
Alignment explanation
Indices: 99463499--99463544 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
99463489 AGGATGGACA
* *
99463499 CATTTTTTTTTCTTTTGTTTTCAT
1 CATTTTCTTCTCTTTTGTTTTCAT
*
99463523 CATTTTCTTCTCTTTTTTTTTC
1 CATTTTCTTCTCTTTTGTTTTC
99463545 CATTTCTTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.07, C:0.17, G:0.02, T:0.74
Consensus pattern (24 bp):
CATTTTCTTCTCTTTTGTTTTCAT
Done.