Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 297 of 349
Found at i:99463548 original size:22 final size:23
Alignment explanation
Indices: 99463497--99463549 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 23
99463487 AAAGGATGGA
* *
99463497 CACATTTTTTTTTCTTTTGTTTT
1 CACATTTTCTTCTCTTTTGTTTT
*
99463520 CATCATTTTCTTCTCTTTTTTTTT
1 CA-CATTTTCTTCTCTTTTGTTTT
99463544 C-CATTT
1 CACATTT
99463550 CTTTATTACT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
22 5 0.19
23 2 0.08
24 19 0.73
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (23 bp):
CACATTTTCTTCTCTTTTGTTTT
Found at i:99475296 original size:27 final size:26
Alignment explanation
Indices: 99475253--99475407 Score: 150
Period size: 27 Copynumber: 5.8 Consensus size: 26
99475243 AAACCCCTGA
99475253 TTTGTAAAATTACTGAAATACCTCTAG
1 TTTGTAAAATTACTGAAATACC-CTAG
* * *
99475280 GTTGTAAAATTAATGAAATACCCTAA
1 TTTGTAAAATTACTGAAATACCCTAG
** *
99475306 TTTGTAAAATTACCAAAATACCCTCAA
1 TTTGTAAAATTACTGAAATACCCT-AG
* *
99475333 TTTGCAAAATTA-TCGAAATACCCTCG
1 TTTGTAAAATTACT-GAAATACCCTAG
* *
99475359 ACTTGTAAAATTACTGAAATACCCCCAG
1 -TTTGTAAAATTACTGAAATA-CCCTAG
* *
99475387 TTTGTAAAATCACCGAAATAC
1 TTTGTAAAATTACTGAAATAC
99475408 TCTTATAGTG
Statistics
Matches: 104, Mismatches: 19, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
26 24 0.23
27 75 0.72
28 5 0.05
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.30
Consensus pattern (26 bp):
TTTGTAAAATTACTGAAATACCCTAG
Found at i:99475342 original size:53 final size:53
Alignment explanation
Indices: 99475247--99475435 Score: 175
Period size: 54 Copynumber: 3.5 Consensus size: 53
99475237 TCGTTAAAAC
** *
99475247 CCCTGATTTGTAAAATTACTGAAATA-CCTCTAGGTTGTAAAATTAATGAAATA
1 CCCTGATTTGTAAAATTACCAAAATACCCTC-AGTTTGTAAAATTAATGAAATA
* * *
99475300 CCCTAATTTGTAAAATTACCAAAATACCCTCAATTTGCAAAATT-ATCGAAATA
1 CCCTGATTTGTAAAATTACCAAAATACCCTCAGTTTGTAAAATTAAT-GAAATA
* ** * * **
99475353 CCCTCGACTTGTAAAATTACTGAAATACCCCCAGTTTGTAAAATCACCGAAATA
1 CCCT-GATTTGTAAAATTACCAAAATACCCTCAGTTTGTAAAATTAATGAAATA
* * * *
99475407 CTCTTATAGTGTTAAATTACCAAAATACC
1 CCCTGAT-TTGTAAAATTACCAAAATACC
99475436 TGTCTAGGGT
Statistics
Matches: 108, Mismatches: 23, Indels: 9
0.77 0.16 0.06
Matches are distributed among these distances:
52 2 0.02
53 44 0.41
54 62 0.57
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.31
Consensus pattern (53 bp):
CCCTGATTTGTAAAATTACCAAAATACCCTCAGTTTGTAAAATTAATGAAATA
Found at i:99475380 original size:54 final size:53
Alignment explanation
Indices: 99475254--99475407 Score: 177
Period size: 54 Copynumber: 2.9 Consensus size: 53
99475244 AACCCCTGAT
* *
99475254 TTGTAAAATTACTGAAATA-CCTCTAGGTTGTAAAATTAAT-GAAATACCCTAAT
1 TTGTAAAATTACTGAAATACCCTC-AGTTTGTAAAATT-ATCGAAATACCCTAAC
** * * *
99475307 TTGTAAAATTACCAAAATACCCTCAATTTGCAAAATTATCGAAATACCCTCGAC
1 TTGTAAAATTACTGAAATACCCTCAGTTTGTAAAATTATCGAAATACCCT-AAC
* * *
99475361 TTGTAAAATTACTGAAATACCCCCAGTTTGTAAAATCACCGAAATAC
1 TTGTAAAATTACTGAAATACCCTCAGTTTGTAAAATTATCGAAATAC
99475408 TCTTATAGTG
Statistics
Matches: 84, Mismatches: 14, Indels: 5
0.82 0.14 0.05
Matches are distributed among these distances:
52 2 0.02
53 37 0.44
54 45 0.54
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.30
Consensus pattern (53 bp):
TTGTAAAATTACTGAAATACCCTCAGTTTGTAAAATTATCGAAATACCCTAAC
Found at i:99475434 original size:81 final size:80
Alignment explanation
Indices: 99475281--99475435 Score: 177
Period size: 81 Copynumber: 1.9 Consensus size: 80
99475271 TACCTCTAGG
* * * *
99475281 TTGTAAAATTAATGAAATACCCTAATTTGTAAAATTACCAAAATACCCTCAATTTGCAAAATTAT
1 TTGTAAAATTAATGAAATACCCCAATTTGTAAAATCACCAAAATACCCTCAATGTGCAAAATTAC
*
99475346 CGAAATACCCTCGAC
66 CAAAATACCCTCGAC
* * * * * **
99475361 TTGTAAAATTACTGAAATACCCCCAGTTTGTAAAATCACCGAAATACTCT-TATAGTGTTAAATT
1 TTGTAAAATTAATGAAATA-CCCCAATTTGTAAAATCACCAAAATACCCTCAAT-GTGCAAAATT
99475425 ACCAAAATACC
64 ACCAAAATACC
99475436 TGTCTAGGGT
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
80 20 0.33
81 41 0.67
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.30
Consensus pattern (80 bp):
TTGTAAAATTAATGAAATACCCCAATTTGTAAAATCACCAAAATACCCTCAATGTGCAAAATTAC
CAAAATACCCTCGAC
Found at i:99475789 original size:22 final size:22
Alignment explanation
Indices: 99475749--99475790 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
99475739 TGCCGCTTAA
* *
99475749 TTGATTATGGCTCTCTGCCATC
1 TTGACTATGGCTCTATGCCATC
*
99475771 TTGACTATGGCTTTATGCCA
1 TTGACTATGGCTCTATGCCA
99475791 AACATATTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.17, C:0.24, G:0.19, T:0.40
Consensus pattern (22 bp):
TTGACTATGGCTCTATGCCATC
Found at i:99475960 original size:32 final size:32
Alignment explanation
Indices: 99475887--99475960 Score: 85
Period size: 32 Copynumber: 2.3 Consensus size: 32
99475877 ATTACCGTCG
* *
99475887 CTAATGGCTATGTGCCAAACATAATACAGTTA
1 CTAATGGCTTTGTGCCAAACATAATACAGCTA
* ** *
99475919 CTGATGGCTTTGTGCCAATTATAATACTGCTA
1 CTAATGGCTTTGTGCCAAACATAATACAGCTA
*
99475951 CTAAAGGCTT
1 CTAATGGCTT
99475961 AGAGCTGCAT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (32 bp):
CTAATGGCTTTGTGCCAAACATAATACAGCTA
Found at i:99477775 original size:49 final size:48
Alignment explanation
Indices: 99477667--99477982 Score: 249
Period size: 47 Copynumber: 6.7 Consensus size: 48
99477657 TATAATGCCA
* * * * *
99477667 ATGCCATGTCCCGGACATGGTTTTACACTGGCTCATC-CATC-AAGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCT-ATCAAATCGAAGCCG
*
99477714 ATGCCATGTCCCAGACATGGTCTTACACTAACTATCAAAATCGAAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTATC-AAATCGAAGCCG
* *
99477763 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAAATCCG-TGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTAT--CAAAT-CGAAGCCG
* * ** *
99477813 ATGCCATGTCCCAGACATAGTCTTACACTAAC-A-CATCTCGTAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTATCAAATCGAAGCCG
* * * *** *
99477859 ATG-CATGTCCTAGACAT-GTTTTACACTAGCTCTCGTCTC-AATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTATCAAATCGAA-GCCG
* * * * **
99477905 ATGCCATGTCCCAGACATGGTCTTACATTGGATCTCATAAT-GTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTATCA-AATCGAAGCCG
*
99477953 ATG-CATGTCCCAGACA-AGTCTTACACTAGC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGC
99477983 ACGCAAATAA
Statistics
Matches: 218, Mismatches: 37, Indels: 29
0.77 0.13 0.10
Matches are distributed among these distances:
44 11 0.05
45 16 0.07
46 34 0.16
47 55 0.25
48 22 0.10
49 39 0.18
50 38 0.17
51 3 0.01
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTATCAAATCGAAGCCG
Found at i:99477919 original size:92 final size:97
Alignment explanation
Indices: 99477667--99477982 Score: 305
Period size: 94 Copynumber: 3.3 Consensus size: 97
99477657 TATAATGCCA
* * * * *
99477667 ATGCCATGTCCCGGACATGGTTTTACACTGGCTCATC-CATCAA-GTCGATGCCATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCACATCAATGCCAATGCCATGTCCCAGAC
99477730 ATGGTCTTACACTAACTATCAAAATCGAAGCCG
65 ATGGTCTTACACTAACTATCAAAATCGAAGCCG
** *
99477763 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAAATCCGTGCCGATGCCATGTCCCAGA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAC--ATCAATGCCAATGCCATGTCCCAGA
* ** *
99477828 CATAGTCTTACACTAAC-A-C-ATCTCGTAGCCG
64 CATGGTCTTACACTAACTATCAAAATCGAAGCCG
* * *
99477859 ATG-CATGTCCTAGACAT-GTTTTACACTAGCTCTCGTC-TCAATGCCAATGCCATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC-ACATCAATGCCAATGCCATGTCCCAGAC
* * * * **
99477921 ATGGTCTTACATTGGA-TCTCATAAT-GTGGCCG
65 ATGGTCTTACACT-AACTATCAAAATCGAAGCCG
*
99477953 ATG-CATGTCCCAGACA-AGTCTTACACTAGC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGC
99477983 ACGCAAATAA
Statistics
Matches: 184, Mismatches: 26, Indels: 22
0.79 0.11 0.09
Matches are distributed among these distances:
92 33 0.18
93 1 0.01
94 50 0.27
95 17 0.09
96 44 0.24
97 1 0.01
98 4 0.02
99 34 0.18
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (97 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATCAATGCCAATGCCATGTCCCAGACA
TGGTCTTACACTAACTATCAAAATCGAAGCCG
Found at i:99480214 original size:27 final size:28
Alignment explanation
Indices: 99480130--99480227 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
99480120 CATGAGATTG
* * * *
99480130 GCACTAAGTGTGCGGGTTTAAATTCTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
99480159 GCACTAAGTGTGTGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
99480187 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
99480214 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
99480228 GACTTAATAT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 24 0.39
28 21 0.34
29 17 0.27
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:99480238 original size:27 final size:27
Alignment explanation
Indices: 99480158--99480240 Score: 87
Period size: 27 Copynumber: 3.0 Consensus size: 27
99480148 TAAATTCTAC
* * *
99480158 AGCACTAAGTGTGTGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
99480186 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
99480213 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
99480240 A
1 A
99480241 TTTTTGAATC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
27 30 0.61
28 19 0.39
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:99480241 original size:29 final size:27
Alignment explanation
Indices: 99480130--99480241 Score: 89
Period size: 28 Copynumber: 4.0 Consensus size: 27
99480120 CATGAGATTG
** * *
99480130 GCACTAAGTGTGCGGGTTTAAATTCTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* * *
99480159 GCACTAAGTGTGTGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
99480187 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
99480214 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
99480242 TTTTGAATCA
Statistics
Matches: 70, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
27 23 0.33
28 27 0.39
29 20 0.29
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.34
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:99496052 original size:15 final size:15
Alignment explanation
Indices: 99496034--99496062 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
99496024 ATATTTATAA
99496034 AATTATTATTATTAT
1 AATTATTATTATTAT
99496049 AATTATTATTATTA
1 AATTATTATTATTA
99496063 GATAGGGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
AATTATTATTATTAT
Found at i:99506516 original size:36 final size:37
Alignment explanation
Indices: 99506459--99506535 Score: 138
Period size: 36 Copynumber: 2.1 Consensus size: 37
99506449 ATCCATCAAG
99506459 TCGATGACATGTCCCAAACATGGTCTTACACTGACTA
1 TCGATGACATGTCCCAAACATGGTCTTACACTGACTA
*
99506496 TCGA-GACATGTCCCAGACATGGTCTTACACTGACTA
1 TCGATGACATGTCCCAAACATGGTCTTACACTGACTA
99506532 TCGA
1 TCGA
99506536 AATCGAGGCC
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
36 35 0.90
37 4 0.10
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (37 bp):
TCGATGACATGTCCCAAACATGGTCTTACACTGACTA
Found at i:99506561 original size:49 final size:50
Alignment explanation
Indices: 99506505--99506628 Score: 139
Period size: 50 Copynumber: 2.5 Consensus size: 50
99506495 ATCGAGACAT
99506505 GTCCCAGACATGGTCTTACACTGACTATCGA-A-A-TCGAGGCCGACACCAC
1 GTCCCAGACATGGTCTTACACTGACTATC-ACATATTCG-GGCCGACACCAC
* * * ** *
99506554 GTCCCAGACATTGTCTTACACT-AGCTCTCACATATTCGTGCCGATGCCAT
1 GTCCCAGACATGGTCTTACACTGA-CTATCACATATTCGGGCCGACACCAC
99506604 GTCCCAGACATGGTCTTACACTGAC
1 GTCCCAGACATGGTCTTACACTGAC
99506629 ACATCTCGTA
Statistics
Matches: 63, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
48 2 0.03
49 26 0.41
50 31 0.49
51 4 0.06
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (50 bp):
GTCCCAGACATGGTCTTACACTGACTATCACATATTCGGGCCGACACCAC
Found at i:99506689 original size:46 final size:45
Alignment explanation
Indices: 99506554--99506812 Score: 185
Period size: 46 Copynumber: 5.5 Consensus size: 45
99506544 CCGACACCAC
*
99506554 GTCCCAGACATTGTCTTACACTAGCTCTCACATATTCGTGCCGATGCCAT
1 GTCCCAGACA-TGTCTTACACTAGCT-T-ACAT-TTCGAGCCGATG-CAT
*
99506604 GTCCCAGACATGGTCTTACACT-GAC--ACATCTCGTAGCCGATGCAT
1 GTCCCAGACAT-GTCTTACACTAG-CTTACATTTCG-AGCCGATGCAT
*
99506649 GTCCCAGACATGTCTTACATTAGCTTACATTTCGAGGCCGATGCAT
1 GTCCCAGACATGTCTTACACTAGCTTACATTTCGA-GCCGATGCAT
* * * * *
99506695 G-CCCTATACATGTCTTACACTAGC-T-CTTGTCTCAATGCCAAGGCCAT
1 GTCCC-AGACATGTCTTACACTAGCTTACAT-T-TCGA-GCCGATG-CAT
* **
99506742 GTCCCAGACATGGTCTTACACTGGCTCTA-ATAATAT-G-GATGATGCAT
1 GTCCCAGACAT-GTCTTACACTAGCT-TACAT--T-TCGAGCCGATGCAT
99506789 GTCCCAGACATGTCTTACACTAGC
1 GTCCCAGACATGTCTTACACTAGC
99506813 ACACAAAAAA
Statistics
Matches: 170, Mismatches: 22, Indels: 38
0.74 0.10 0.17
Matches are distributed among these distances:
44 12 0.07
45 24 0.14
46 66 0.39
47 23 0.14
48 18 0.11
49 2 0.01
50 23 0.14
51 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (45 bp):
GTCCCAGACATGTCTTACACTAGCTTACATTTCGAGCCGATGCAT
Found at i:99509203 original size:34 final size:34
Alignment explanation
Indices: 99509140--99509260 Score: 181
Period size: 34 Copynumber: 3.6 Consensus size: 34
99509130 TTAGGGCCTT
*
99509140 AGCCCATTTCAGT-ATAGTAGCAGTCTGGGCTTG
1 AGCCCATTTCAGTAACAGTAGCAGTCTGGGCTTG
* * *
99509173 AGCCCATTTCAATAACAGTAGCAGTTTGGGCCTG
1 AGCCCATTTCAGTAACAGTAGCAGTCTGGGCTTG
* *
99509207 AGCCCATTTTAGTAACAGTATCAGTCTGGGCTTG
1 AGCCCATTTCAGTAACAGTAGCAGTCTGGGCTTG
99509241 AGCCCATTTCAGTAACAGTA
1 AGCCCATTTCAGTAACAGTA
99509261 CAATATGAAA
Statistics
Matches: 77, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
33 12 0.16
34 65 0.84
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (34 bp):
AGCCCATTTCAGTAACAGTAGCAGTCTGGGCTTG
Found at i:99509242 original size:68 final size:67
Alignment explanation
Indices: 99509128--99509260 Score: 203
Period size: 68 Copynumber: 2.0 Consensus size: 67
99509118 TTATAGTTTT
* *
99509128 AGTTAGGGCCTTAGCCCATTTCAGTATAGTAGCAGTCTGGGCTTGAGCCCATTTCAATAACAGTA
1 AGTTAGGGCCTGAGCCCATTTCAGTACAGTAGCAGTCTGGGCTTGAGCCCATTTCAATAACAGTA
99509193 GC
66 GC
* * * *
99509195 AGTTTGGGCCTGAGCCCATTTTAGTAACAGTATCAGTCTGGGCTTGAGCCCATTTCAGTAACAGT
1 AGTTAGGGCCTGAGCCCATTTCAGT-ACAGTAGCAGTCTGGGCTTGAGCCCATTTCAATAACAGT
99509260 A
65 A
99509261 CAATATGAAA
Statistics
Matches: 59, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
67 22 0.37
68 37 0.63
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (67 bp):
AGTTAGGGCCTGAGCCCATTTCAGTACAGTAGCAGTCTGGGCTTGAGCCCATTTCAATAACAGTA
GC
Found at i:99509609 original size:27 final size:27
Alignment explanation
Indices: 99509571--99509699 Score: 170
Period size: 27 Copynumber: 4.8 Consensus size: 27
99509561 CATCACGTAG
* *
99509571 GGGCAAAATAGTCATCTTACCACCTAA
1 GGGCAAAATAGTCATTTTACCACATAA
* *
99509598 GGGCAAATTAGTCATTTTACCATATAA
1 GGGCAAAATAGTCATTTTACCACATAA
*
99509625 GGGCAAAACT-GTCATTTTACCACATGA
1 GGGCAAAA-TAGTCATTTTACCACATAA
* * *
99509652 GGGCAAAATAGTTAGTTTATCACATAA
1 GGGCAAAATAGTCATTTTACCACATAA
99509679 GGGCAAAATAGTCATTTTACC
1 GGGCAAAATAGTCATTTTACC
99509700 TTACAGGGGT
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 1 0.01
27 84 0.98
28 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (27 bp):
GGGCAAAATAGTCATTTTACCACATAA
Found at i:99509721 original size:81 final size:81
Alignment explanation
Indices: 99509571--99509724 Score: 184
Period size: 81 Copynumber: 1.9 Consensus size: 81
99509561 CATCACGTAG
* * * **
99509571 GGGCAAAATAGTCATCTTACCACCTAAGGGCAAATTAGTCATTTTACCATATAAGGGCAAAACTG
1 GGGCAAAATAGTCATCTTACCACATAAGGGCAAAATAGTCATTTTACCATACAAGGGCAAAACAA
99509636 TCATTTTACCACATGA
66 TCATTTTACCACATGA
* * * * * **
99509652 GGGCAAAATAGTTAGT-TTATCACATAAGGGCAAAATAGTCATTTTACCTTACAGGGGTATTACA
1 GGGCAAAATAGTCA-TCTTACCACATAAGGGCAAAATAGTCATTTTACCATACAAGGGCAAAACA
99509716 ATCATTTTA
65 ATCATTTTA
99509725 TCCTACTGAG
Statistics
Matches: 60, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
81 59 0.98
82 1 0.02
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.30
Consensus pattern (81 bp):
GGGCAAAATAGTCATCTTACCACATAAGGGCAAAATAGTCATTTTACCATACAAGGGCAAAACAA
TCATTTTACCACATGA
Found at i:99512047 original size:47 final size:47
Alignment explanation
Indices: 99511971--99512061 Score: 141
Period size: 47 Copynumber: 1.9 Consensus size: 47
99511961 TCTGAGTAAG
*
99511971 ACCATGGCATCGATATATATGTGCAAGTAAGACCACGTTTAATAAAA
1 ACCATGGCATCGATATATATGTGCAAGTAAGACCACGTCTAATAAAA
99512018 ACCATGGCATCGATATATGTATG-GC-AGTAAGACCACGTCTAATA
1 ACCATGGCATCGATATA--TATGTGCAAGTAAGACCACGTCTAATA
99512062 CGTTGGCATC
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
47 35 0.85
48 2 0.05
49 4 0.10
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (47 bp):
ACCATGGCATCGATATATATGTGCAAGTAAGACCACGTCTAATAAAA
Found at i:99512103 original size:56 final size:56
Alignment explanation
Indices: 99512027--99512162 Score: 213
Period size: 55 Copynumber: 2.4 Consensus size: 56
99512017 AACCATGGCA
99512027 TCGATATATGTATG-GCAGTAAGACCACGTCTAATACGTTGGCATCGATATGTGATT
1 TCGATATATGTATGCG-AGTAAGACCACGTCTAATACGTTGGCATCGATATGTGATT
* * *
99512083 TCGATATATGTGTGCGAGTAAGA-CACGTTTAATACGTTGGCATCGATATGTGGTT
1 TCGATATATGTATGCGAGTAAGACCACGTCTAATACGTTGGCATCGATATGTGATT
*
99512138 CCGATATATGTATGCGAGTAAGACC
1 TCGATATATGTATGCGAGTAAGACC
99512163 CTATCTGAAA
Statistics
Matches: 73, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
55 51 0.70
56 21 0.29
57 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (56 bp):
TCGATATATGTATGCGAGTAAGACCACGTCTAATACGTTGGCATCGATATGTGATT
Found at i:99513846 original size:21 final size:21
Alignment explanation
Indices: 99513806--99513846 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
99513796 TTTAGTATTT
*
99513806 TAATTTGTTTTGTTTGATGTA
1 TAATTTGTTTTGTATGATGTA
99513827 TAATTTGTTTTGATAT-ATGT
1 TAATTTGTTTTG-TATGATGT
99513847 TGGACTATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.22, C:0.00, G:0.17, T:0.61
Consensus pattern (21 bp):
TAATTTGTTTTGTATGATGTA
Found at i:99528451 original size:42 final size:42
Alignment explanation
Indices: 99528404--99528485 Score: 155
Period size: 42 Copynumber: 2.0 Consensus size: 42
99528394 TGTTGAAAAT
*
99528404 GATGCAAGAAATATTCGAAGTGCTGCCTCCAAATAAAGTGGA
1 GATGCAAGAAATATTCGAAGTGCTACCTCCAAATAAAGTGGA
99528446 GATGCAAGAAATATTCGAAGTGCTACCTCCAAATAAAGTG
1 GATGCAAGAAATATTCGAAGTGCTACCTCCAAATAAAGTG
99528486 CACTTTTCTA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.22
Consensus pattern (42 bp):
GATGCAAGAAATATTCGAAGTGCTACCTCCAAATAAAGTGGA
Found at i:99531591 original size:43 final size:42
Alignment explanation
Indices: 99531544--99531665 Score: 131
Period size: 42 Copynumber: 2.8 Consensus size: 42
99531534 AGACGTGGTG
99531544 TTACATGTAATCAAATATCGATGCCACTGTCCCAGACAGGGTC
1 TTACATGTAATCAAATATCGATGCCA-TGTCCCAGACAGGGTC
* * * * *
99531587 TTACATGAAATCAAATA-CGATGCCGATGTCCTAAATATGGTC
1 TTACATGTAATCAAATATCGATGCC-ATGTCCCAGACAGGGTC
*
99531629 TTACATGTAAATCTCAA-ATCGATGCCAATGTCCCAGA
1 TTACATGT-AATC-AAATATCGATGCC-ATGTCCCAGA
99531666 TGTGGCTTAC
Statistics
Matches: 65, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
42 26 0.40
43 22 0.34
44 17 0.26
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (42 bp):
TTACATGTAATCAAATATCGATGCCATGTCCCAGACAGGGTC
Found at i:99531629 original size:42 final size:41
Alignment explanation
Indices: 99531539--99531684 Score: 143
Period size: 43 Copynumber: 3.4 Consensus size: 41
99531529 ATCCTAGACG
* * *
99531539 TGGTGTTACATGTAATCAAATATCGATGCCACTGTCCCAGACA
1 TGGTCTTACATGAAATCAAATA-CGATGCCA-TGTCCCAGATA
* * *
99531582 GGGTCTTACATGAAATCAAATACGATGCCGATGTCCTAAATA
1 TGGTCTTACATGAAATCAAATACGATGCC-ATGTCCCAGATA
*
99531624 TGGTCTTACATGTAAATCTCAAAT-CGATGCCAATGTCCCAGATG
1 TGGTCTTACATG-AAA--TCAAATACGATGCC-ATGTCCCAGATA
*
99531668 TGG-CTTACACGAAATCA
1 TGGTCTTACATGAAATCA
99531685 CATATCGGAA
Statistics
Matches: 87, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
40 3 0.03
42 29 0.33
43 30 0.34
44 19 0.22
45 6 0.07
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.27
Consensus pattern (41 bp):
TGGTCTTACATGAAATCAAATACGATGCCATGTCCCAGATA
Found at i:99531676 original size:43 final size:44
Alignment explanation
Indices: 99531538--99531676 Score: 130
Period size: 42 Copynumber: 3.2 Consensus size: 44
99531528 CATCCTAGAC
* * * *
99531538 GTGGTGTTACATGT-AATC-AAATATCGATGCCACTGTCCCAGACA
1 GTGGTCTTACATGTAAATCTCAA-ATCGATGCCAATGTCCCAGA-T
* * *
99531582 G-GGTCTTACATG-AAA--TCAAATACGATGCCGATGTCCTAAAT
1 GTGGTCTTACATGTAAATCTCAAAT-CGATGCCAATGTCCCAGAT
*
99531623 ATGGTCTTACATGTAAATCTCAAATCGATGCCAATGTCCCAGAT
1 GTGGTCTTACATGTAAATCTCAAATCGATGCCAATGTCCCAGAT
99531667 GTGG-CTTACA
1 GTGGTCTTACA
99531677 CGAAATCACA
Statistics
Matches: 76, Mismatches: 12, Indels: 15
0.74 0.12 0.15
Matches are distributed among these distances:
41 2 0.03
42 27 0.36
43 21 0.28
44 20 0.26
45 6 0.08
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (44 bp):
GTGGTCTTACATGTAAATCTCAAATCGATGCCAATGTCCCAGAT
Found at i:99541332 original size:27 final size:26
Alignment explanation
Indices: 99541292--99541397 Score: 106
Period size: 27 Copynumber: 3.9 Consensus size: 26
99541282 AGGAAGCGTC
*
99541292 CTAGTGGCTATGCCACAATTATCTGAT
1 CTAGTGGCTCTGCCAC-ATTATCTGAT
99541319 CTAGTGGCTCTGCCACATATATCT-ATT
1 CTAGTGGCTCTGCCACAT-TATCTGA-T
* *
99541346 CTGGTGGCTCTGCCACGATCATCTGTAT
1 CTAGTGGCTCTGCCAC-ATTATCTG-AT
* * *
99541374 CTGGTGACTCTGTCACATTATCTG
1 CTAGTGGCTCTGCCACATTATCTG
99541398 TTCTGGTAGC
Statistics
Matches: 68, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
26 3 0.04
27 47 0.69
28 17 0.25
29 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (26 bp):
CTAGTGGCTCTGCCACATTATCTGAT
Found at i:99541396 original size:54 final size:54
Alignment explanation
Indices: 99541295--99541404 Score: 141
Period size: 54 Copynumber: 2.0 Consensus size: 54
99541285 AAGCGTCCTA
* *
99541295 GTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTATTCTG
1 GTGGCTATGCCACAATCATCTGATCTAGTGACTCTGCCACATATATCTATTCTG
* * * * *
99541349 GTGGCTCTGCCACGATCATCTGTATCTGGTGACTCTGTCACAT-TATCTGTTCTG
1 GTGGCTATGCCACAATCATCTG-ATCTAGTGACTCTGCCACATATATCTATTCTG
99541403 GT
1 GT
99541405 AGCCATGCTG
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
54 31 0.65
55 17 0.35
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.36
Consensus pattern (54 bp):
GTGGCTATGCCACAATCATCTGATCTAGTGACTCTGCCACATATATCTATTCTG
Found at i:99543258 original size:44 final size:41
Alignment explanation
Indices: 99543160--99543277 Score: 121
Period size: 44 Copynumber: 2.8 Consensus size: 41
99543150 TCAAATATCG
* * *
99543160 ATGCCACCGTCCCAGTCAGGTTCTTACACGAAATAAAATACG
1 ATGCCAACGTCCCAGACAGG-TCTTACACGAAATAAAATACA
* * *
99543202 ATGCCGATGTCCCAGACACGGTCTTACACGTAAATCTCAAAT-CA
1 ATGCCAACGTCCCAGACA-GGTCTTACACG-AAA--TAAAATACA
99543246 ATGCCAACGTCCCAGACATGGTCTTACACGAA
1 ATGCCAACGTCCCAGACA-GGTCTTACACGAA
99543278 CTCACATATC
Statistics
Matches: 63, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
42 23 0.37
43 7 0.11
44 28 0.44
45 5 0.08
ACGTcount: A:0.32, C:0.30, G:0.17, T:0.21
Consensus pattern (41 bp):
ATGCCAACGTCCCAGACAGGTCTTACACGAAATAAAATACA
Found at i:99546519 original size:15 final size:15
Alignment explanation
Indices: 99546499--99546537 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
99546489 GAAAGACTTA
99546499 AACCCTAGGCTTGAC
1 AACCCTAGGCTTGAC
*
99546514 AACCCTAGGCTTGAT
1 AACCCTAGGCTTGAC
*
99546529 AACCTTAGG
1 AACCCTAGG
99546538 AAGTCATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (15 bp):
AACCCTAGGCTTGAC
Found at i:99554831 original size:85 final size:85
Alignment explanation
Indices: 99554679--99554836 Score: 219
Period size: 85 Copynumber: 1.9 Consensus size: 85
99554669 TGTAGGGCTC
* * * * * *
99554679 ACACGCCCGTGTGACCTTAGGACACGCCCGTGCTGGAGGTGATGTTTGACCCCATGTAACTCTCT
1 ACACACCCATGTGACCCTAGGACACACCCATGCTAGAGGTGATGTTTGACCCCATGTAACTCTCT
99554744 GACTTGTGGCACAGCCTTGG
66 GACTTGTGGCACAGCCTTGG
* * *
99554764 ACACACCCATGTGACCCTAGGACATACCCATGCTAGAGGATG-TGTTTGATCCCATGTAGCTCTC
1 ACACACCCATGTGACCCTAGGACACACCCATGCTAGAGG-TGATGTTTGACCCCATGTAACTCTC
99554828 TGACTTGTG
65 TGACTTGTG
99554837 CATACAGTCG
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
85 61 0.97
86 2 0.03
ACGTcount: A:0.20, C:0.28, G:0.25, T:0.26
Consensus pattern (85 bp):
ACACACCCATGTGACCCTAGGACACACCCATGCTAGAGGTGATGTTTGACCCCATGTAACTCTCT
GACTTGTGGCACAGCCTTGG
Found at i:99559088 original size:21 final size:22
Alignment explanation
Indices: 99559036--99559088 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
99559026 AAATAAAGTC
*
99559036 CATGTA-CAAATATCATCATCT
1 CATGTATCATATATCATCATCT
* *
99559057 CATGTTTTCATATATCAT-ATGT
1 CATG-TATCATATATCATCATCT
99559079 CATGTATCAT
1 CATGTATCAT
99559089 CATTTACTTG
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 9 0.35
22 8 0.31
23 9 0.35
ACGTcount: A:0.32, C:0.19, G:0.08, T:0.42
Consensus pattern (22 bp):
CATGTATCATATATCATCATCT
Found at i:99570459 original size:85 final size:85
Alignment explanation
Indices: 99570316--99570491 Score: 343
Period size: 85 Copynumber: 2.1 Consensus size: 85
99570306 GGCCGGCCAT
99570316 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
99570381 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
99570401 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
99570466 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
99570486 GGGCAT
1 GAGCAT
99570492 AGGCAATAAA
Statistics
Matches: 90, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 90 1.00
ACGTcount: A:0.38, C:0.09, G:0.27, T:0.27
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:99572571 original size:47 final size:47
Alignment explanation
Indices: 99572517--99573019 Score: 799
Period size: 47 Copynumber: 10.6 Consensus size: 47
99572507 TATTTGAATA
99572517 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
99572564 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGTCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
99572613 AATGTGAAAGTGTATATCTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
99572660 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
99572709 AATGTGAAAGTGTACATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
99572756 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
99572805 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
99572852 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
99572899 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*** * * * *
99572946 AATGTGAAAGTGTATATATGTGACCGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
99572993 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
99573020 TCCCGAAGGG
Statistics
Matches: 422, Mismatches: 28, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
47 288 0.68
49 134 0.32
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:99572625 original size:96 final size:96
Alignment explanation
Indices: 99572517--99573019 Score: 825
Period size: 96 Copynumber: 5.3 Consensus size: 96
99572507 TATTTGAATA
99572517 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
99572582 TATGTGATAAGGCCTAATGGTCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
99572613 AATGTGAAAGTGTATATCTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
99572678 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
99572709 AATGTGAAAGTGTACATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
99572774 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
99572805 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
99572868 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
99572899 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*** * * * *
99572962 TATGTGACCGGGCCGAGTGGCCAACGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* *
99572993 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
99573020 TCCCGAAGGG
Statistics
Matches: 387, Mismatches: 20, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
94 146 0.38
96 241 0.62
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:99572844 original size:143 final size:141
Alignment explanation
Indices: 99572517--99573019 Score: 799
Period size: 143 Copynumber: 3.5 Consensus size: 141
99572507 TATTTGAATA
99572517 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
* * *
99572582 TATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATCTGTGATAAGGCCGAAT
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
99572647 GGCCAATGTGATG
129 GGCCGATGTGATG
*
99572660 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTACA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
99572725 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTA
99572790 ATGGCCGATGTGATG
127 ATGGCCGATGTGATG
*
99572805 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
99572870 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
99572935 CCGATGTGATG
131 CCGATGTGATG
*** * * * * * *
99572946 AATGTGAAAGTGTATATATGTGACCGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
99573011 TGTGATAAG
66 TGTGATAAG
99573020 TCCCGAAGGG
Statistics
Matches: 335, Mismatches: 21, Indels: 10
0.92 0.06 0.03
Matches are distributed among these distances:
141 99 0.30
143 145 0.43
145 91 0.27
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (141 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
CCGATGTGATG
Found at i:99576093 original size:38 final size:38
Alignment explanation
Indices: 99576002--99576119 Score: 161
Period size: 37 Copynumber: 3.1 Consensus size: 38
99575992 TGATTCCCGC
*
99576002 ATATAGCCTACGGACCTTAAGTCCAGATATAAT-TCCG
1 ATATAGCCTACGGACCTTAAGTCCAGATATAATCTCCA
99576039 ATATAGCCTACGGACCTTAAGTCC-GATATAATCTCGCA
1 ATATAGCCTACGGACCTTAAGTCCAGATATAATCTC-CA
* *
99576077 ATATAGCCTAAC-GACCTTAAGTCCGGATATAATCACCA
1 ATATAGCCT-ACGGACCTTAAGTCCAGATATAATCTCCA
99576115 TATAT
1 -ATAT
99576120 CATGTATATA
Statistics
Matches: 74, Mismatches: 2, Indels: 8
0.88 0.02 0.10
Matches are distributed among these distances:
36 8 0.11
37 26 0.35
38 24 0.32
39 16 0.22
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (38 bp):
ATATAGCCTACGGACCTTAAGTCCAGATATAATCTCCA
Found at i:99579711 original size:47 final size:47
Alignment explanation
Indices: 99579649--99580006 Score: 549
Period size: 47 Copynumber: 7.6 Consensus size: 47
99579639 GATAATTGTG
* *
99579649 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
99579696 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC-ATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
99579742 ATGTGAAAGTGTATTATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTA-TATATGTGATAAGGCCTAATGGCCGATGTGATGA
99579790 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
99579839 ATGTGAAAGTGTATATATGTGATAAGG-CTAATAGCGCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC-CGATGTGATGA
99579886 ATGTGAAAGTGTATATATGTGATGAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGAT-AAGGCCTAATGGCCGATGTGATGA
* * * * * * *
99579934 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
99579981 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
99580007 TCCCGAAGGG
Statistics
Matches: 288, Mismatches: 16, Indels: 14
0.91 0.05 0.04
Matches are distributed among these distances:
46 29 0.10
47 148 0.51
48 57 0.20
49 52 0.18
50 2 0.01
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:99579817 original size:143 final size:144
Alignment explanation
Indices: 99579649--99580006 Score: 559
Period size: 143 Copynumber: 2.5 Consensus size: 144
99579639 GATAATTGTG
99579649 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
99579712 ATGTGATAAGGCCGAAT-G-GCCATGTGATGAATGTGAAAGTGTATTATATGTGAT-AAGGCCTA
66 ATGTGATAAGG-CGAATAGCGCCATGTGATGAATGTGAAAGTGTA-TATATGTGATGAAGGCCTA
99579774 ATGGCCGATGTGATGA
129 ATGGCCGATGTGATGA
99579790 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
99579855 ATGTGATAAGGCTAATAGCGCGATGTGATGAATGTGAAAGTGTATATATGTGATGAAGGCCTAAT
66 ATGTGATAAGGCGAATAGCGCCATGTGATGAATGTGAAAGTGTATATATGTGATGAAGGCCTAAT
99579920 GGCCGATGTGATGA
131 GGCCGATGTGATGA
* * * * * * * *
99579934 ATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
99579997 ATGTGATAAG
66 ATGTGATAAG
99580007 TCCCGAAGGG
Statistics
Matches: 202, Mismatches: 10, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
141 5 0.02
142 60 0.30
143 78 0.39
144 59 0.29
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (144 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCGAATAGCGCCATGTGATGAATGTGAAAGTGTATATATGTGATGAAGGCCTAAT
GGCCGATGTGATGA
Found at i:99579911 original size:25 final size:25
Alignment explanation
Indices: 99579877--99579955 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
99579867 TAATAGCGCG
99579877 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
99579902 ATGTGATGAAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
99579925 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
99579950 ATGTGA
1 ATGTGA
99579956 CAGGGCCGAG
Statistics
Matches: 36, Mismatches: 16, Indels: 4
0.64 0.29 0.07
Matches are distributed among these distances:
23 13 0.36
24 4 0.11
25 19 0.53
ACGTcount: A:0.33, C:0.05, G:0.30, T:0.32
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:99579978 original size:95 final size:94
Alignment explanation
Indices: 99579649--99580006 Score: 549
Period size: 95 Copynumber: 3.8 Consensus size: 94
99579639 GATAATTGTG
* *
99579649 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
99579714 GTGATAAGGCCGAATGGCC-ATGTGATGA
66 GTGATAAGGCCTAATGGCCGATGTGATGA
99579742 ATGTGAAAGTGTATTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 ATGTGAAAGTGTA-TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
99579807 TATGTGATAAGGCCTAATGGCCGATGTGATGA
63 TATGTGATAAGGCCTAATGGCCGATGTGATGA
*
99579839 ATGTGAAAGTGTATATATGTGATAAGG-CTAATAGCGCGATGTGATGAATGTGAAAGTGTATATA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC-CGATGTGATGAATGTGAAAGTGTATATA
99579903 TGTGATGAAGGCCTAATGGCCGATGTGATGA
65 TGTGAT-AAGGCCTAATGGCCGATGTGATGA
* * * * * * * *
99579934 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
99579999 GTGATAAG
66 GTGATAAG
99580007 TCCCGAAGGG
Statistics
Matches: 245, Mismatches: 13, Indels: 13
0.90 0.05 0.05
Matches are distributed among these distances:
93 11 0.04
94 60 0.24
95 86 0.35
96 66 0.27
97 22 0.09
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (94 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:99582323 original size:40 final size:40
Alignment explanation
Indices: 99582209--99582564 Score: 510
Period size: 40 Copynumber: 9.1 Consensus size: 40
99582199 AGGTCTCGAC
99582209 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
99582248 GATGTA-CCGGGCTAAGT-CCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
99582286 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
99582326 GATGTACCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
99582366 GATGTATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
99582405 GATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
99582445 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * *
99582485 -A-ATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCC-CGAAGAGCATTCATGCTAGT
* * * * *
99582523 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
99582563 GA
1 GA
99582565 CGTGTATTCG
Statistics
Matches: 287, Mismatches: 22, Indels: 15
0.89 0.07 0.05
Matches are distributed among these distances:
37 1 0.00
38 57 0.20
39 64 0.22
40 163 0.57
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:99582425 original size:119 final size:119
Alignment explanation
Indices: 99582215--99582564 Score: 526
Period size: 119 Copynumber: 3.0 Consensus size: 119
99582205 CGACGATGAT
*
99582215 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA-CCGGGCTAAGTCCGAAGAGCATTCA
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCG
*
99582279 TGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTAC
66 TGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAC
99582333 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCG
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCG
* *
99582398 TGCTAGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
66 TGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAC
* * * * **
99582452 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT-A-ATATCCGTGCTAAACCTCGAAGAGCATTC
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTC-CGAAGAGCATTC
* * * * * *
99582515 GTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
65 GTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
99582565 CGTGTATTCG
Statistics
Matches: 213, Mismatches: 17, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
117 12 0.06
118 95 0.45
119 106 0.50
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCG
TGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAC
Found at i:99582559 original size:197 final size:196
Alignment explanation
Indices: 99582209--99582564 Score: 547
Period size: 197 Copynumber: 1.8 Consensus size: 196
99582199 AGGTCTCGAC
*
99582209 GATGATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTACCGGGCTAAGTCCGAAGAGC
1 GATGATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGTGATGTACCGGGCTAAGTCCGAAGAGC
* * *
99582274 ATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTACCCGGGC
66 ATTCATGCTAGTGATATATCCGGGCTAAGACCCGAAGAGCATTCGTGCTAGTGATATACCCGGGC
*
99582339 TAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAG
131 TAAGTCCCGAAGAGCAATCATGCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAG
99582404 T
196 T
99582405 GATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAG
1 GATG-ATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA-CCGGGCTAAG-TCCGAAG
* * * * *
99582470 AGCATTCGTGCTAGT-A-ATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCTGGTGTTATATCC
63 AGCATTCATGCTAGTGATATATCCGGGCTAAGACC-CGAAGAGCATTCGTGCTAGTGATATACCC
* *
99582532 GGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
127 GGGCTAAGTCCCGAAGAGCAATCATGCTAGTGA
99582565 CGTGTATTCG
Statistics
Matches: 144, Mismatches: 12, Indels: 7
0.88 0.07 0.04
Matches are distributed among these distances:
196 6 0.04
197 106 0.74
198 11 0.08
199 21 0.15
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (196 bp):
GATGATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGTGATGTACCGGGCTAAGTCCGAAGAGC
ATTCATGCTAGTGATATATCCGGGCTAAGACCCGAAGAGCATTCGTGCTAGTGATATACCCGGGC
TAAGTCCCGAAGAGCAATCATGCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCGTGCTAG
T
Found at i:99586221 original size:49 final size:47
Alignment explanation
Indices: 99586110--99586468 Score: 556
Period size: 47 Copynumber: 7.6 Consensus size: 47
99586100 GATAATTGTG
* *
99586110 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
99586157 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
99586204 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
99586253 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
99586302 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
99586349 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
99586396 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
99586443 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
99586469 TCCCGAAGGG
Statistics
Matches: 290, Mismatches: 20, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
47 196 0.68
49 94 0.32
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:99588625 original size:13 final size:13
Alignment explanation
Indices: 99588607--99588634 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
99588597 TTTATTTTTT
99588607 TTAACATAAAATA
1 TTAACATAAAATA
99588620 TTAACATAAAATA
1 TTAACATAAAATA
99588633 TT
1 TT
99588635 TATAATATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:99595775 original size:37 final size:37
Alignment explanation
Indices: 99595671--99595778 Score: 155
Period size: 37 Copynumber: 2.9 Consensus size: 37
99595661 TGAAATCTCT
* * * *
99595671 ACACGAAGTTATCGGGTCTTACCCGGACA-AAATCTCC
1 ACACGTAGTCATCGGGTCTTACCCGGA-ATATATTTCC
99595708 ACACGTAGTCATCGGGTCTTACCCGGAATATATTTCC
1 ACACGTAGTCATCGGGTCTTACCCGGAATATATTTCC
*
99595745 ACACGTAGTCATTGGGTCTTACCCGGAATATATT
1 ACACGTAGTCATCGGGTCTTACCCGGAATATATT
99595779 CCCAAGTTTC
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
36 1 0.02
37 64 0.98
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (37 bp):
ACACGTAGTCATCGGGTCTTACCCGGAATATATTTCC
Found at i:99596071 original size:98 final size:97
Alignment explanation
Indices: 99595918--99596156 Score: 365
Period size: 98 Copynumber: 2.5 Consensus size: 97
99595908 CCACACCTCC
* * * * *
99595918 TACATACTTCACACTAGCCCTTCGGCTTTACGACATATACGTA-CCTCATACATATTTCACACTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCCTCATACATATTTCACACTA
*
99595982 GTCATTCGGCTTTACCACATATACATATCTCATA
66 GCCATTCGGCTTTACCACATATACATATCTC--A
* *
99596016 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCC-CATACATATTTCACATTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCCTCATACATATTTCACACTA
99596080 GCCATTCGGCTTTACCACATATACATATCTCA
66 GCCATTCGGCTTTACCACATATACATATCTCA
*
99596112 TACATATTTCACATTAGCCATTCGGATTTACCACATATACATATC
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC
99596157 TTTATCTTGT
Statistics
Matches: 130, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
96 44 0.34
98 84 0.65
99 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (97 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCCTCATACATATTTCACACTA
GCCATTCGGCTTTACCACATATACATATCTCA
Found at i:99596155 original size:48 final size:48
Alignment explanation
Indices: 99595918--99596157 Score: 363
Period size: 48 Copynumber: 5.0 Consensus size: 48
99595908 CCACACCTCC
* * * * * *
99595918 TACATACTTCACACTAGCCCTTCGGCTTTACGACATATACGTACCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
99595966 TACATATTTCACACTAGTCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
99596016 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCCCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
99596064 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
99596112 TACATATTTCACATTAGCCATTCGGATTTACCACATATACATATCT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
99596158 TTATCTTGTG
Statistics
Matches: 177, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
48 133 0.75
50 44 0.25
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.35
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:99599837 original size:39 final size:39
Alignment explanation
Indices: 99599789--99599912 Score: 221
Period size: 39 Copynumber: 3.2 Consensus size: 39
99599779 CGAAGTTCGA
* *
99599789 ATATGATTCCCGCATATAGCCTACGGATCTTAAGTCCGG
1 ATATAATTCCCGCATATAGCCTACGGACCTTAAGTCCGG
99599828 ATATAATTCCCGCATATAGCCTACGGACCTTAAGTCCGG
1 ATATAATTCCCGCATATAGCCTACGGACCTTAAGTCCGG
*
99599867 ATATAATTCTCGCATATAGCCTACGGACCTTAAGTCCGG
1 ATATAATTCCCGCATATAGCCTACGGACCTTAAGTCCGG
99599906 ATATAAT
1 ATATAAT
99599913 CACCATATAT
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 82 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (39 bp):
ATATAATTCCCGCATATAGCCTACGGACCTTAAGTCCGG
Found at i:99599847 original size:78 final size:78
Alignment explanation
Indices: 99599746--99599912 Score: 217
Period size: 78 Copynumber: 2.1 Consensus size: 78
99599736 GACTATTAGC
** * *
99599746 CCGGATATAATTCCAGCACATAGCCGGTGAACCCGAAGTTCGAATATGATTCCCGCATATAGCCT
1 CCGGATATAATTCCAGCACATAGCCGACGAACCCGAAGTCCGAATATAATTCCCGCATATAGCCT
*
99599811 ACGGATCTTAAGT
66 ACGGACCTTAAGT
* * * * ** * *
99599824 CCGGATATAATTCCCGCATATAGCCTACGGACCTTAAGTCCGGATATAATTCTCGCATATAGCCT
1 CCGGATATAATTCCAGCACATAGCCGACGAACCCGAAGTCCGAATATAATTCCCGCATATAGCCT
99599889 ACGGACCTTAAGT
66 ACGGACCTTAAGT
99599902 CCGGATATAAT
1 CCGGATATAAT
99599913 CACCATATAT
Statistics
Matches: 76, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
78 76 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (78 bp):
CCGGATATAATTCCAGCACATAGCCGACGAACCCGAAGTCCGAATATAATTCCCGCATATAGCCT
ACGGACCTTAAGT
Found at i:99608114 original size:3 final size:3
Alignment explanation
Indices: 99608106--99608133 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
99608096 TATCTTGAAT
99608106 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
99608134 GGTTTAATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:99610016 original size:3 final size:3
Alignment explanation
Indices: 99610008--99610042 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
99609998 TGAAATATGT
99610008 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
99610043 GTAACAAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:99610107 original size:20 final size:17
Alignment explanation
Indices: 99610061--99610115 Score: 67
Period size: 17 Copynumber: 3.1 Consensus size: 17
99610051 TATTTTACAT
99610061 ATAAA-AATATAATAAA
1 ATAAATAATATAATAAA
99610077 ATAAATAATATAATAAGA
1 ATAAATAATATAATAA-A
*
99610095 ATATATAACATATAATAAA
1 ATAAAT-A-ATATAATAAA
99610114 AT
1 AT
99610116 TTATATATAT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
16 5 0.15
17 10 0.29
18 6 0.18
19 4 0.12
20 9 0.26
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (17 bp):
ATAAATAATATAATAAA
Found at i:99611583 original size:16 final size:15
Alignment explanation
Indices: 99611561--99611598 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
99611551 TATTTATGTG
*
99611561 ATATATATTTGAATA
1 ATATATATATGAATA
99611576 AT-TATATAATGAATA
1 ATATATAT-ATGAATA
99611591 ATATATAT
1 ATATATAT
99611599 GCAAATTTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 5 0.25
15 10 0.50
16 5 0.25
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (15 bp):
ATATATATATGAATA
Found at i:99613768 original size:46 final size:46
Alignment explanation
Indices: 99613718--99613893 Score: 218
Period size: 46 Copynumber: 3.8 Consensus size: 46
99613708 TGATTGAGCA
99613718 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
99613764 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
99613809 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
99613857 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
99613894 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 5 0.04
46 61 0.54
47 29 0.26
48 3 0.03
50 5 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:99613874 original size:93 final size:93
Alignment explanation
Indices: 99613715--99613886 Score: 319
Period size: 93 Copynumber: 1.8 Consensus size: 93
99613705 GGATGATTGA
99613715 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
99613780 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
99613808 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC-GAACTCGTTGAG
99613872 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
99613887 CTTATGGGCG
Statistics
Matches: 77, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
92 2 0.03
93 75 0.97
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:99615315 original size:87 final size:86
Alignment explanation
Indices: 99615207--99615369 Score: 272
Period size: 87 Copynumber: 1.9 Consensus size: 86
99615197 GTACATGCTA
*
99615207 AGGTTAAGTTCTTACTCTTAATGAATTCATATCCCACAGTTTGGGTGGTCCTATTGAGATGGACT
1 AGGTTAAGTTCTTACTCTTAATGAATTCATATCCCACAGTTTGGGTGGTCCTAATGAGATGGACT
99615272 TGATGAATTCATTGATATGTG
66 TGATGAATTCATTGATATGTG
* * * *
99615293 AGGTTAAGTTTCTTACTTTTAATGAGTTCATATCCTAGAGTTTGGGTGGTCCTAATGAGATGGAC
1 AGGTTAAG-TTCTTACTCTTAATGAATTCATATCCCACAGTTTGGGTGGTCCTAATGAGATGGAC
99615358 TTGATGAATTCA
65 TTGATGAATTCA
99615370 CATAATTTAA
Statistics
Matches: 71, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
86 8 0.11
87 63 0.89
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (86 bp):
AGGTTAAGTTCTTACTCTTAATGAATTCATATCCCACAGTTTGGGTGGTCCTAATGAGATGGACT
TGATGAATTCATTGATATGTG
Found at i:99617130 original size:18 final size:17
Alignment explanation
Indices: 99617099--99617132 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
99617089 TATTTTTATA
*
99617099 TTTATATTTTTAATTTG
1 TTTATATTTATAATTTG
99617116 TTTATAATTTATAATTT
1 TTTAT-ATTTATAATTT
99617133 CTTTTTAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (17 bp):
TTTATATTTATAATTTG
Found at i:99617354 original size:15 final size:16
Alignment explanation
Indices: 99617333--99617385 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 16
99617323 CAGATGAGTG
*
99617333 ACTAAAATATTTAATT
1 ACTAAAATATTTAATA
* * *
99617349 TC-AAAAAATTAAATA
1 ACTAAAATATTTAATA
99617364 ACTAAAATATTTAATA
1 ACTAAAATATTTAATA
*
99617380 ATTAAA
1 ACTAAA
99617386 TAACCAAAAT
Statistics
Matches: 28, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
15 11 0.39
16 17 0.61
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (16 bp):
ACTAAAATATTTAATA
Found at i:99619415 original size:16 final size:16
Alignment explanation
Indices: 99619383--99619425 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
99619373 ACATTTTCAA
*
99619383 AAAATATATTAAGTTT
1 AAAATATATAAAGTTT
*
99619399 AAAATATATAAATTTT
1 AAAATATATAAAGTTT
* *
99619415 ACATTATATAA
1 AAAATATATAA
99619426 GTAGAATTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (16 bp):
AAAATATATAAAGTTT
Found at i:99621613 original size:20 final size:20
Alignment explanation
Indices: 99621585--99621633 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
99621575 TAGTGCAATC
*
99621585 AAAGTCACCAGAGT-ACAAAT
1 AAAGACACCAGAGTGA-AAAT
*
99621605 AAAGACACCATAGTGAAAAT
1 AAAGACACCAGAGTGAAAAT
*
99621625 AGAGACACC
1 AAAGACACC
99621634 GAAGTGCAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 24 0.96
21 1 0.04
ACGTcount: A:0.51, C:0.20, G:0.16, T:0.12
Consensus pattern (20 bp):
AAAGACACCAGAGTGAAAAT
Found at i:99623004 original size:26 final size:26
Alignment explanation
Indices: 99622968--99623077 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
99622958 TGATACAAAT
99622968 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
99622994 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
99623020 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
99623046 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
99623072 TGATAA
1 TGATAA
99623078 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:99624553 original size:28 final size:26
Alignment explanation
Indices: 99624511--99624585 Score: 87
Period size: 26 Copynumber: 2.8 Consensus size: 26
99624501 AAAAGTAGCT
* * *
99624511 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTGTTATACCCCTA-G-ATGCA
*
99624539 AAATTACTGTTATACCCCTAGGTGCA
1 AAATTACTGTTATACCCCTAGATGCA
*
99624565 AAATTACCGTTATACCCCTAG
1 AAATTACTGTTATACCCCTAG
99624586 GGTTAATTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 23 0.55
27 1 0.02
28 18 0.43
ACGTcount: A:0.35, C:0.23, G:0.12, T:0.31
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGATGCA
Found at i:99624730 original size:27 final size:27
Alignment explanation
Indices: 99624690--99624774 Score: 118
Period size: 27 Copynumber: 3.1 Consensus size: 27
99624680 AGGAAGCGTC
* *
99624690 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCACGATTATCTGTT
99624717 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACGAT-TATCTGTT
* *
99624744 CTGGTGGTTCTGCTACGATTATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTGTT
99624771 CTGG
1 CTGG
99624775 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
26 2 0.04
27 48 0.92
28 2 0.04
ACGTcount: A:0.14, C:0.22, G:0.26, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACGATTATCTGTT
Found at i:99629651 original size:42 final size:43
Alignment explanation
Indices: 99629561--99629701 Score: 144
Period size: 42 Copynumber: 3.3 Consensus size: 43
99629551 TATAAGATCG
* * *
99629561 TGTCTGGGACATAGGCCTTGATTTGAGATTTACGTGTAAGACCA
1 TGTCTGGGACATAGGCATCGATCT-AGATTTACGTGTAAGACCA
*
99629605 TGTCTGGGACATAGGCATCGTATCT-GATTT-CGTGTAAGACCC
1 TGTCTGGGACATAGGCATCG-ATCTAGATTTACGTGTAAGACCA
* * * *
99629647 TGTCTGGGACAGAGGCATTGATACT-GAGTTACATGTAAGACCA
1 TGTCTGGGACATAGGCATCGAT-CTAGATTTACGTGTAAGACCA
* *
99629690 CGTCCGGGACAT
1 TGTCTGGGACAT
99629702 TAGCATTGTA
Statistics
Matches: 82, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
41 2 0.02
42 35 0.43
43 24 0.29
44 18 0.22
45 3 0.04
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (43 bp):
TGTCTGGGACATAGGCATCGATCTAGATTTACGTGTAAGACCA
Found at i:99635826 original size:20 final size:20
Alignment explanation
Indices: 99635783--99635826 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
99635773 ACTATTTTGT
99635783 TATGGGCCAACTGTATTGAA
1 TATGGGCCAACTGTATTGAA
*
99635803 -ATGGGCCCAACTGTGTT-AA
1 TATGGG-CCAACTGTATTGAA
99635822 TATGG
1 TATGG
99635827 ACAAGGCCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (20 bp):
TATGGGCCAACTGTATTGAA
Found at i:99637745 original size:17 final size:17
Alignment explanation
Indices: 99637723--99637756 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
99637713 TTAGATGTTG
99637723 ATTTCTCGTATTTTATT
1 ATTTCTCGTATTTTATT
99637740 ATTTCTCGTATTTTATT
1 ATTTCTCGTATTTTATT
99637757 TTTGAGTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.65
Consensus pattern (17 bp):
ATTTCTCGTATTTTATT
Found at i:99638740 original size:6 final size:6
Alignment explanation
Indices: 99638714--99638769 Score: 58
Period size: 6 Copynumber: 9.2 Consensus size: 6
99638704 ATGAAGTACT
* * * * *
99638714 CTGTGTA CTGCTA CTGCTA CTTTTA CTGTTA CTGTTA CTATTA CTATTA
1 CTGT-TA CTGTTA CTGTTA CTGTTA CTGTTA CTGTTA CTGTTA CTGTTA
99638763 CTGTTA C
1 CTGTTA C
99638770 GATGTATTCC
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
6 40 0.93
7 3 0.07
ACGTcount: A:0.20, C:0.21, G:0.12, T:0.46
Consensus pattern (6 bp):
CTGTTA
Found at i:99645191 original size:17 final size:17
Alignment explanation
Indices: 99645165--99645206 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
99645155 ATATTTTAAG
*
99645165 TATAAGATATT-TAATTA
1 TATAATATATTATAA-TA
99645182 TATAATATATTATAATA
1 TATAATATATTATAATA
99645199 -ATAATATA
1 TATAATATA
99645207 ATAGTTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 8 0.35
17 12 0.52
18 3 0.13
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (17 bp):
TATAATATATTATAATA
Found at i:99645223 original size:21 final size:21
Alignment explanation
Indices: 99645176--99645219 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
99645166 ATAAGATATT
* *
99645176 TAATTATATAATATATTATAA
1 TAATAATATAATATATTAAAA
*
99645197 TAATAATATAATA-GTTAAAA
1 TAATAATATAATATATTAAAA
99645217 TAA
1 TAA
99645220 ATAAAAGAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (21 bp):
TAATAATATAATATATTAAAA
Found at i:99645234 original size:18 final size:17
Alignment explanation
Indices: 99645213--99645246 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
99645203 TATAATAGTT
99645213 AAAATAAATAAAAGAAAC
1 AAAATAAA-AAAAGAAAC
*
99645231 AAAATAGAAAAAGAAA
1 AAAATAAAAAAAGAAA
99645247 GAACAGAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.79, C:0.03, G:0.09, T:0.09
Consensus pattern (17 bp):
AAAATAAAAAAAGAAAC
Found at i:99645261 original size:21 final size:19
Alignment explanation
Indices: 99645236--99645289 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 19
99645226 GAAACAAAAT
99645236 AGAAAAAGAAAGAACAGAGAA
1 AGAAAAAGAAAGAA-AG-GAA
* *
99645257 TGAAAACGAAATTGAAAGGAA
1 AGAAAAAGAAA--GAAAGGAA
99645278 AGAAAAAGAAAG
1 AGAAAAAGAAAG
99645290 GAAAAATAGG
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
19 1 0.04
21 21 0.78
22 2 0.07
23 3 0.11
ACGTcount: A:0.67, C:0.04, G:0.24, T:0.06
Consensus pattern (19 bp):
AGAAAAAGAAAGAAAGGAA
Found at i:99648165 original size:27 final size:26
Alignment explanation
Indices: 99648128--99648186 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
99648118 CCACATATAT
*
99648128 ATATC-GTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
99648153 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
99648180 ATATCTG
1 ATATCTG
99648187 GTAGCCTCGC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 5 0.18
26 2 0.07
27 21 0.75
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:99652903 original size:71 final size:71
Alignment explanation
Indices: 99652816--99652955 Score: 226
Period size: 71 Copynumber: 2.0 Consensus size: 71
99652806 CCTTCTTGAC
* ** * *
99652816 AGACTTGTCAGGCAACAACATTCCTCTTACCATATAAAGTATTTGAGCTCTAACATATCAATCAA
1 AGACTTGTCAGACAACAACATTCAACTTACCATATAAAGCATTTGAGCTCTAACATATCAACCAA
99652881 TCTCAT
66 TCTCAT
*
99652887 AGACTTGTCCGACAACAACATTCAACTTACCATATAAAGCATTTGAGCTCTAACATATCAACCAA
1 AGACTTGTCAGACAACAACATTCAACTTACCATATAAAGCATTTGAGCTCTAACATATCAACCAA
99652952 TCTC
66 TCTC
99652956 CTTCACAATT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
71 63 1.00
ACGTcount: A:0.36, C:0.26, G:0.09, T:0.29
Consensus pattern (71 bp):
AGACTTGTCAGACAACAACATTCAACTTACCATATAAAGCATTTGAGCTCTAACATATCAACCAA
TCTCAT
Found at i:99653709 original size:25 final size:25
Alignment explanation
Indices: 99653681--99653729 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
99653671 ACAAAGGACA
99653681 AATAAAGGTTTTAGTCAGACTTCAG
1 AATAAAGGTTTTAGTCAGACTTCAG
99653706 AATAAAGGTTTTAGTCAGACTTCA
1 AATAAAGGTTTTAGTCAGACTTCA
99653730 CAATTTAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.33
Consensus pattern (25 bp):
AATAAAGGTTTTAGTCAGACTTCAG
Found at i:99657736 original size:37 final size:38
Alignment explanation
Indices: 99657683--99657759 Score: 147
Period size: 37 Copynumber: 2.1 Consensus size: 38
99657673 TTACTGCCCG
99657683 ATACTTTTTTTTTGGTTACTAAAATTTATTAAGTTTAT
1 ATACTTTTTTTTTGGTTACTAAAATTTATTAAGTTTAT
99657721 ATAC-TTTTTTTTGGTTACTAAAATTTATTAAGTTTAT
1 ATACTTTTTTTTTGGTTACTAAAATTTATTAAGTTTAT
99657758 AT
1 AT
99657760 TCAAGAACAA
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
37 35 0.90
38 4 0.10
ACGTcount: A:0.30, C:0.05, G:0.08, T:0.57
Consensus pattern (38 bp):
ATACTTTTTTTTTGGTTACTAAAATTTATTAAGTTTAT
Found at i:99660704 original size:18 final size:18
Alignment explanation
Indices: 99660650--99660704 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 18
99660640 AAAGCTCCCT
* *
99660650 AACCTGAATCCGAATCGG
1 AACCAGAATCCGAATCCG
* * *
99660668 AACCCGAACCCGAACCCG
1 AACCAGAATCCGAATCCG
*
99660686 AACCAGAATCGGAATCCG
1 AACCAGAATCCGAATCCG
99660704 A
1 A
99660705 TTTACGAGTG
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.36, C:0.35, G:0.20, T:0.09
Consensus pattern (18 bp):
AACCAGAATCCGAATCCG
Found at i:99661870 original size:31 final size:30
Alignment explanation
Indices: 99661835--99661902 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 30
99661825 ATATAATTGG
* * *
99661835 ATTATTACATTATTTAAAAATTTTTATTTAA
1 ATTATTAAATTATTAAAAAATTTAT-TTTAA
99661866 ATTATTAAATTATTAAAAAATTTATTTTAA
1 ATTATTAAATTATTAAAAAATTTATTTTAA
*
99661896 ATCATTA
1 ATTATTA
99661903 TAAAAGCATA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
30 11 0.33
31 22 0.67
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (30 bp):
ATTATTAAATTATTAAAAAATTTATTTTAA
Found at i:99662467 original size:22 final size:23
Alignment explanation
Indices: 99662433--99662476 Score: 54
Period size: 22 Copynumber: 1.9 Consensus size: 23
99662423 ATTTAAACAG
*
99662433 TTTAATGACTTAA-ATAAATTTT
1 TTTAATAACTTAAGATAAATTTT
*
99662455 TTTAATAATTTAATGATAAATT
1 TTTAATAACTTAA-GATAAATT
99662477 ATAACGTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 11 0.61
24 7 0.39
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (23 bp):
TTTAATAACTTAAGATAAATTTT
Found at i:99663352 original size:49 final size:49
Alignment explanation
Indices: 99663226--99663352 Score: 127
Period size: 49 Copynumber: 2.6 Consensus size: 49
99663216 TTATTTTCTT
*
99663226 TAATTAATTTAAATTAACTAAGAGATAAATATTAAAAATTTCTATTATAAC
1 TAATTAATTTAAATTAA-TAAGAGAT-AAGATTAAAAATTTCTATTATAAC
* * **
99663277 TAATTAAATTTAAA-TATTAAGTGATAAGATTAAATAATTAT-T-TTATCTC
1 TAATT-AATTTAAATTAATAAGAGATAAGATTAAA-AATT-TCTATTATAAC
99663326 TATATT-ATTTAAATTAATAAGAGATAA
1 TA-ATTAATTTAAATTAATAAGAGATAA
99663353 ATATTAATTA
Statistics
Matches: 64, Mismatches: 7, Indels: 12
0.77 0.08 0.14
Matches are distributed among these distances:
48 7 0.11
49 26 0.41
50 15 0.23
51 8 0.12
52 8 0.12
ACGTcount: A:0.49, C:0.04, G:0.06, T:0.42
Consensus pattern (49 bp):
TAATTAATTTAAATTAATAAGAGATAAGATTAAAAATTTCTATTATAAC
Found at i:99665508 original size:20 final size:20
Alignment explanation
Indices: 99665483--99665521 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
99665473 TGGAGTAGGA
*
99665483 ATATCGATACCTTATGAAAT
1 ATATCGATACCTTAAGAAAT
*
99665503 ATATCGATATCTTAAGAAA
1 ATATCGATACCTTAAGAAA
99665522 AGTATTGATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.44, C:0.13, G:0.10, T:0.33
Consensus pattern (20 bp):
ATATCGATACCTTAAGAAAT
Found at i:99668758 original size:47 final size:44
Alignment explanation
Indices: 99668690--99668819 Score: 154
Period size: 47 Copynumber: 2.8 Consensus size: 44
99668680 ATTTGTTTGT
*
99668690 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGTCACATT-ATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGG---CATTGACGA
*
99668736 GAGCTAGTGTAAGACCATGTCTGGGACAGAGCATCGGCATTGAGACGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACA-TGCATCGGCATT--GACGA
* *
99668784 GAGTTAGTGTAAGACATGTCTGGGACATACATCGGC
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGC
99668820 CTCGAGACAT
Statistics
Matches: 74, Mismatches: 5, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
45 4 0.05
46 21 0.28
47 26 0.35
48 23 0.31
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (44 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGACGA
Found at i:99668831 original size:14 final size:14
Alignment explanation
Indices: 99668812--99668841 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
99668802 TCTGGGACAT
*
99668812 ACATCGGCCTCGAG
1 ACATCGGCCTCAAG
99668826 ACATCGGCCTCAAG
1 ACATCGGCCTCAAG
99668840 AC
1 AC
99668842 GTAAGCAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.27, C:0.37, G:0.23, T:0.13
Consensus pattern (14 bp):
ACATCGGCCTCAAG
Found at i:99676519 original size:46 final size:46
Alignment explanation
Indices: 99676370--99676590 Score: 200
Period size: 46 Copynumber: 4.7 Consensus size: 46
99676360 ATTTTTTTGT
* * * *
99676370 GAGCTAGTGTAAGACATGTCTGGGACATGCATTGGCCA-C-ATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CATCGA-GACGA
*
99676416 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCGAGACGA
* * * *
99676464 GAGCTAGTGTAAGACATGTTTAGGACATGCATCGGCCTCGAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACG-A
* *
99676511 -AGCCAGTGTAAGACATGTCTGGGACATGCATC--AATACGAGATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCAT-CGAGACGA
* * * *
99676555 TAGTCAGTGTAAGACCATGTCTAGGATATGGCATCG
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCG
99676591 ACTTAAGATA
Statistics
Matches: 146, Mismatches: 19, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
44 2 0.01
45 18 0.12
46 69 0.47
47 34 0.23
48 22 0.15
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGA
Found at i:99676611 original size:47 final size:47
Alignment explanation
Indices: 99676416--99676639 Score: 185
Period size: 47 Copynumber: 4.8 Consensus size: 47
99676406 CACATTATGA
* * * *
99676416 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGA-
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGAC-TTAAGA-TAT
* * * ** **
99676464 GAGCTAGTGTAAGA-CATGTTTAGGACAT-GCATCGGCCTCGAGACGT
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATC-GACTTAAGATAT
* * *
99676510 AAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATC-A-ATACGAGATGAT
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACTTA--AGAT-AT
* *
99676556 -AGTCAGTGTAAGACCATGTCTAGGATATGGCATCGACTTAAGATAT
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACTTAAGATAT
*
99676602 GAGCCAGTGTAAGACCATGTCTAGGATATGGCATCGAC
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGAC
99676640 ACCTTACCCA
Statistics
Matches: 144, Mismatches: 22, Indels: 21
0.77 0.12 0.11
Matches are distributed among these distances:
45 15 0.10
46 54 0.38
47 59 0.41
48 14 0.10
49 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.23
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACTTAAGATAT
Found at i:99677807 original size:20 final size:21
Alignment explanation
Indices: 99677769--99677807 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
99677759 TCGCGTTGGT
*
99677769 CACATGGGCGTGTTGCCCTTC
1 CACACGGGCGTGTTGCCCTTC
99677790 CACACGGGCGTG-TGCCCT
1 CACACGGGCGTGTTGCCCT
99677808 GTCTTAAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.10, C:0.36, G:0.31, T:0.23
Consensus pattern (21 bp):
CACACGGGCGTGTTGCCCTTC
Found at i:99680512 original size:48 final size:48
Alignment explanation
Indices: 99680460--99680825 Score: 378
Period size: 48 Copynumber: 7.6 Consensus size: 48
99680450 TATGTGTGCC
* * * *
99680460 AGTGTAAGACCATGTCTAGGACATGACATCAGCCACGATATGAGATCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCATGATATGAGAGCT
* * * ** * *
99680508 AGTGTAAGAACATGCCTGGGACATGGCATCGGCGTTGATATGTGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCATGATATGAGAGCT
* *
99680556 AGTGTAAGACCATGTCTAGGACATGGCATCAGCCAT-ATCATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCATGAT-ATGAGAGCT
* * * ** * *
99680604 AGTGTAAGACCATGTCTAGGACATGTCATCGGCTTTGATATGTGCA-TT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCATGATATGAG-AGCT
* *
99680652 AGTGTAAGACCATGTCTGGGACATGGCATCAACCA-CATCATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCATGAT-ATGAGAGCT
* * * * *
99680700 AGTGTAAGACCGTGTCTGGGACATGGCATCGGCAATGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCATGATATGAGAGCT
* * * *
99680748 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTTGACATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCATGATATGAGAGCT
* * *
99680796 AATGTAAGACCATGTTTGGAACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
99680826 GACAATACAC
Statistics
Matches: 258, Mismatches: 54, Indels: 12
0.80 0.17 0.04
Matches are distributed among these distances:
47 5 0.02
48 249 0.97
49 4 0.02
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCCATGATATGAGAGCT
Found at i:99680611 original size:96 final size:96
Alignment explanation
Indices: 99680447--99680826 Score: 458
Period size: 96 Copynumber: 4.0 Consensus size: 96
99680437 GACATTTGGG
* * * * *
99680447 TGATATGTGTGCCAGTGTAAGACCATGTCTAGGACATGACATCAGCCACGAT-ATGAGATCTAGT
1 TGATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCCA-TATCATGAGAGCCAGT
* * *
99680511 GTAAGAACATGCCTGGGACATGGCATCGGCGT
65 GTAAGACCATGTCTGGGACATGGCATCGGCAT
99680543 TGATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCCATATCATGAGAGCCAGTG
1 TGATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCCATATCATGAGAGCCAGTG
* * *
99680608 TAAGACCATGTCTAGGACATGTCATCGGCTT
66 TAAGACCATGTCTGGGACATGGCATCGGCAT
*** * * * *
99680639 TGATATGTGCATTAGTGTAAGACCATGTCTGGGACATGGCATCAACCACATCATGAGAGCTAGTG
1 TGATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCCATATCATGAGAGCCAGTG
* *
99680704 TAAGACCGTGTCTGGGACATGGCATCGGCAA
66 TAAGACCATGTCTGGGACATGGCATCGGCAT
* * * * * * * *
99680735 TGAGACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTTGA-CATGTGAGCCAAT
1 TGATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCCAT-ATCATGAGAGCCAGT
* *
99680799 GTAAGACCATGTTTGGAACATGGCATCG
65 GTAAGACCATGTCTGGGACATGGCATCG
99680827 ACAATACACC
Statistics
Matches: 245, Mismatches: 37, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
95 2 0.01
96 242 0.99
97 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (96 bp):
TGATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGGCATCAGCCATATCATGAGAGCCAGTG
TAAGACCATGTCTGGGACATGGCATCGGCAT
Found at i:99681869 original size:28 final size:28
Alignment explanation
Indices: 99681829--99681925 Score: 185
Period size: 28 Copynumber: 3.5 Consensus size: 28
99681819 ACACAGGTTG
99681829 AGACACGGGCGTGTCATGGCCGTGTGAA
1 AGACACGGGCGTGTCATGGCCGTGTGAA
99681857 AGACACGGGCGTGTCATGGCCGTGTGAA
1 AGACACGGGCGTGTCATGGCCGTGTGAA
99681885 AGACACGGGCGTGTCATGGCCGTGTGAA
1 AGACACGGGCGTGTCATGGCCGTGTGAA
*
99681913 GGACACGGGCGTG
1 AGACACGGGCGTG
99681926 AACTAGGCTG
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
28 68 1.00
ACGTcount: A:0.21, C:0.22, G:0.41, T:0.16
Consensus pattern (28 bp):
AGACACGGGCGTGTCATGGCCGTGTGAA
Found at i:99683440 original size:42 final size:42
Alignment explanation
Indices: 99683389--99683488 Score: 193
Period size: 42 Copynumber: 2.4 Consensus size: 42
99683379 TTCGAAGGTT
99683389 ACACGGCTTGACACACAAGTGTGGCTCTCAACCGTGTGAGGC
1 ACACGGCTTGACACACAAGTGTGGCTCTCAACCGTGTGAGGC
99683431 ACACGGCTTGACACACAAGTGTGGCTCTCAACCGTGTGAGGC
1 ACACGGCTTGACACACAAGTGTGGCTCTCAACCGTGTGAGGC
99683473 ACACGGCTTGAC-CACA
1 ACACGGCTTGACACACA
99683489 TGGCCGTGTT
Statistics
Matches: 58, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
41 4 0.07
42 54 0.93
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (42 bp):
ACACGGCTTGACACACAAGTGTGGCTCTCAACCGTGTGAGGC
Found at i:99684710 original size:180 final size:179
Alignment explanation
Indices: 99684387--99684752 Score: 488
Period size: 180 Copynumber: 2.0 Consensus size: 179
99684377 TAGCTGGAGC
* * ** *
99684387 TACGAAACTCCAAATTAAGATCCGTTAATTTTTCCAAAAACTAGACTCACATATATTCTTACAAA
1 TACGAGACTCCAAATTAAGAACCACTAATTTTCCCAAAAACTAGACTCACATATATTCTTACAAA
* * * *
99684452 AAAATTTAGAATTTTTTGGTTTAGCCAATTTGTACATTTTATTCATTAAAATTACCCCTATTTCA
66 AAAATTTAGAATTTTTTGGTTCAGCCAATTAGTACAGTTTATTCATTAAAATTACCACTATTTCA
* * *
99684517 CTATCTAATAGTTCTGA-CATCTCTTCACTTAAAATTATTTATCTCATGG
131 CTATCCAATAGTTCCGATC-TCTCTTCACTAAAAATTATTTATCTCATGG
* *
99684566 TACGAGACTCCAAATTAAGAACCACTAATTTTCCCAGAAACTAGACTCACATATATTGTTATCAT
1 TACGAGACTCCAAATTAAGAACCACTAATTTTCCCAAAAACTAGACTCACATATATTCTTA-CA-
* *
99684631 AAAATATTTAGAA-TTTTTGGTTCAGCCAATTAGTATAGTTTATTCATTAAAGA-TACCACTATT
64 AAAAAATTTAGAATTTTTTGGTTCAGCCAATTAGTACAGTTTATTCATTAAA-ATTACCACTATT
* * * *
99684694 TCACTGTCCGATAGTTCCGATCTTTCTTCACTAAAAATTATTTATGTCATGG
128 TCACTATCCAATAGTTCCGATCTCTCTTCACTAAAAATTATTTATCTCATGG
99684746 TAC-AGAC
1 TACGAGAC
99684753 CTCGGATGCT
Statistics
Matches: 163, Mismatches: 20, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
179 58 0.36
180 91 0.56
181 14 0.09
ACGTcount: A:0.34, C:0.19, G:0.09, T:0.38
Consensus pattern (179 bp):
TACGAGACTCCAAATTAAGAACCACTAATTTTCCCAAAAACTAGACTCACATATATTCTTACAAA
AAAATTTAGAATTTTTTGGTTCAGCCAATTAGTACAGTTTATTCATTAAAATTACCACTATTTCA
CTATCCAATAGTTCCGATCTCTCTTCACTAAAAATTATTTATCTCATGG
Found at i:99685374 original size:50 final size:50
Alignment explanation
Indices: 99685320--99685753 Score: 395
Period size: 50 Copynumber: 8.6 Consensus size: 50
99685310 CTGGTATGAA
* *
99685320 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
* * * * * **
99685370 TAGTAGCCTACACTTAGTACAACACATGTGACTTATCCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
* * * * * * *
99685420 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAA-CGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAA--CAATCTGGTACACG
* * * * *
99685471 TAATAGCCTGCACTTAGTACTACACATGCGGCCTATCAATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
* * * * *
99685521 TAGTAGCCTGCACTTAGTGCTACACACGTGACCTAACCATTTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
* ** ** ** * *
99685571 GAGTAGCCTGTGCTTAGTACTACACACATGATCGAAACTATC-GAGTACACA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCTAACAATCTG-GTACACG
*
99685622 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
* * * *** *
99685672 TAATAGCCTACACTTAGTACTACACATGTGACCTAAAAATGTCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA--TCTGGTACACG
* *
99685724 TAGTAGCCTGCACATGGTACTACACATGTG
1 TAGTAGCCTGCACTTAGTACTACACATGTG
99685754 TTCTCACAAT
Statistics
Matches: 301, Mismatches: 75, Indels: 14
0.77 0.19 0.04
Matches are distributed among these distances:
49 2 0.01
50 194 0.64
51 71 0.24
52 34 0.11
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
Found at i:99685496 original size:101 final size:100
Alignment explanation
Indices: 99685320--99685706 Score: 300
Period size: 101 Copynumber: 3.9 Consensus size: 100
99685310 CTGGTATGAA
* * * * * *
99685320 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTACACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATCAATCGGGTACACATAATAGCCTACACTT
* * * *
99685385 AGTACAACACATGTGACTTATCCATCTAATACACG
66 AGTACAACACATGCGACCTATCAATCCAATACACG
* * * *
99685420 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAA-CGGGTACGCATAATAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TCAATCGGGTACACATAATAGCCTACAC
* * **
99685484 TTAGTACTACACATGCGGCCTATCAATCCGGTACACG
64 TTAGTACAACACATGCGACCTATCAATCCAATACACG
* * ** * ** * ***
99685521 TAGTAGCCTGCACTTAGTGCTACACACGTGACCTAA-CCATTTGATACACGGAGTAGCCTGTGCT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATCAATCGGGTACACATAATAGCCTACACT
* * * * *
99685585 TAGTACTACACACATGATCGA---AACTATCGAGTACACA
65 TAGTAC-A-ACACATG--CGACCTATCAATCCAATACACG
* * * *
99685622 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAA-CAATCTGGTACACGTAATAGCCTACACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATCAATCGGGTACACATAATAGCCTACACT
* *
99685686 TAGTACTACACATGTGACCTA
65 TAGTACAACACATGCGACCTA
99685707 AAAATGTCTT
Statistics
Matches: 225, Mismatches: 51, Indels: 22
0.76 0.17 0.07
Matches are distributed among these distances:
97 2 0.01
99 8 0.04
100 52 0.23
101 151 0.67
102 10 0.04
104 2 0.01
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (100 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATCAATCGGGTACACATAATAGCCTACACTT
AGTACAACACATGCGACCTATCAATCCAATACACG
Found at i:99685597 original size:151 final size:151
Alignment explanation
Indices: 99685323--99685707 Score: 572
Period size: 151 Copynumber: 2.5 Consensus size: 151
99685313 GTATGAATAG
99685323 TAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTACACTTAGT
1 TAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTACACTTAGT
* * * * *
99685388 ACAACACATGTGACTTATCCATCTAATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATC
66 ACTACACATGTGACCTAACCATCTAATACACGGAGTAGCCTGCACTTAGTACTACACACATGATC
** * *
99685453 GAAGTTAACGGGTACGCATAA
131 GAAACTAACGAGTACACATAA
* * *
99685474 TAGCCTGCACTTAGTACTACACATGCGGCCTATCAATCCGGTACACGTAGTAGCCTGCACTTAGT
1 TAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTACACTTAGT
* * * * **
99685539 GCTACACACGTGACCTAACCATTTGATACACGGAGTAGCCTGTGCTTAGTACTACACACATGATC
66 ACTACACATGTGACCTAACCATCTAATACACGGAGTAGCCTGCACTTAGTACTACACACATGATC
* *
99685604 GAAACTATCGAGTACACATAG
131 GAAACTAACGAGTACACATAA
* *
99685625 TAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAATAGCCTACACTTAGT
1 TAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTACACTTAGT
99685690 ACTACACATGTGACCTAA
66 ACTACACATGTGACCTAA
99685708 AAATGTCTTA
Statistics
Matches: 207, Mismatches: 27, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
151 207 1.00
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (151 bp):
TAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTACACTTAGT
ACTACACATGTGACCTAACCATCTAATACACGGAGTAGCCTGCACTTAGTACTACACACATGATC
GAAACTAACGAGTACACATAA
Found at i:99685749 original size:151 final size:150
Alignment explanation
Indices: 99685319--99685751 Score: 557
Period size: 151 Copynumber: 2.9 Consensus size: 150
99685309 TCTGGTATGA
99685319 ATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTACACT
1 ATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTACACT
* * *
99685384 TAGTACAACACATGTGACTTATCCA-TC-TAATACACGTAGTAGCCTGCACTTAGTACTACACAC
66 TAGTACTACACATGTGACCTAACCATTCTTAA-ACACGTAGTAGCCTGCACTTAGTACTACACA-
** * *
99685447 GTGATCGAAGTTAACGGGTACGC
129 -TGATCGAAACTAACGAGTACAC
* * * *
99685470 ATAATAGCCTGCACTTAGTACTACACATGCGGCCTATCAATCCGGTACACGTAGTAGCCTGCACT
1 ATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTACACT
* * * * * **
99685535 TAGTGCTACACACGTGACCTAACCATT-TGATACACGGAGTAGCCTGTGCTTAGTACTACACACA
66 TAGTACTACACATGTGACCTAACCATTCTTAAACACGTAGTAGCCTGCACTTAGTACT--ACACA
*
99685599 TGATCGAAACTATCGAGTACAC
129 TGATCGAAACTAACGAGTACAC
* *
99685621 ATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAATAGCCTACACT
1 ATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTACACT
** * * *
99685686 TAGTACTACACATGTGACCTAAAAATGTCTTAAACACATAGTAGCCTGCACATGGTACTACACAT
66 TAGTACTACACATGTGACCTAACCAT-TCTTAAACACGTAGTAGCCTGCACTTAGTACTACACAT
99685751 G
130 G
99685752 TGTTCTCACA
Statistics
Matches: 239, Mismatches: 37, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
151 209 0.87
152 3 0.01
153 27 0.11
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (150 bp):
ATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTACACT
TAGTACTACACATGTGACCTAACCATTCTTAAACACGTAGTAGCCTGCACTTAGTACTACACATG
ATCGAAACTAACGAGTACAC
Found at i:99689459 original size:47 final size:47
Alignment explanation
Indices: 99689382--99689597 Score: 324
Period size: 47 Copynumber: 4.6 Consensus size: 47
99689372 GATAATTGTG
99689382 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
99689431 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
99689478 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
99689525 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
99689572 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
99689598 TCCCGAAGGG
Statistics
Matches: 153, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
47 142 0.93
49 11 0.07
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:99692133 original size:40 final size:40
Alignment explanation
Indices: 99691815--99692121 Score: 449
Period size: 40 Copynumber: 7.7 Consensus size: 40
99691805 AGGTCTCGAC
*
99691815 GATG-ATCCGGGCTAAGTCCCAAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
99691854 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
99691894 GATGTA-CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
99691933 GATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
99691973 GATGTATCCGGACTAAGTCCCGAAGAGTATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
99692013 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * * * *
99692053 AATATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCTAGT
* * *
99692093 GTTATATCCGGGCTAGGTCCCGAAGAGCA
1 GATGTATCCGGGCTAAGTCCCGAAGAGCA
99692122 ATCATGCTGG
Statistics
Matches: 242, Mismatches: 22, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 42 0.17
40 198 0.82
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:99692369 original size:29 final size:28
Alignment explanation
Indices: 99692336--99692436 Score: 87
Period size: 29 Copynumber: 3.5 Consensus size: 28
99692326 ATGATTAGAG
*
99692336 GCACTGTGTGTGCAAATTCTTTTAATCGA
1 GCACTATGTGTGCAAATTC-TTTAATCGA
** *
99692365 GCACTATGTGTGCGAAA-TCGGTAATTGA
1 GCACTATGTGTGC-AAATTCTTTAATCGA
* * * * *
99692393 GGCACTGTGTGTGCAAGTTCTTCAACCAA
1 -GCACTATGTGTGCAAATTCTTTAATCGA
99692422 GCACTATGTGTGCAA
1 GCACTATGTGTGCAA
99692437 GATCGATCAG
Statistics
Matches: 56, Mismatches: 13, Indels: 7
0.74 0.17 0.09
Matches are distributed among these distances:
28 22 0.39
29 31 0.55
30 3 0.05
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.31
Consensus pattern (28 bp):
GCACTATGTGTGCAAATTCTTTAATCGA
Found at i:99695319 original size:47 final size:47
Alignment explanation
Indices: 99695242--99695457 Score: 324
Period size: 47 Copynumber: 4.6 Consensus size: 47
99695232 GATAATTGTG
99695242 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
99695291 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
99695338 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
99695385 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
99695432 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
99695458 TCCCGAAGGG
Statistics
Matches: 153, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
47 142 0.93
49 11 0.07
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:99697839 original size:48 final size:48
Alignment explanation
Indices: 99697751--99697885 Score: 137
Period size: 48 Copynumber: 2.8 Consensus size: 48
99697741 TACCGAGGTT
* * * * * * *
99697751 GATGCCATATCCCAGATATGGTCTTACATTGGC-ACACATATCGATGCC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTA-TCATATCAACGCC
* * **
99697799 GGTGTCATGTCCCAAACATGGTCTTACACTGGCTATCATATCAACGTT
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTATCATATCAACGCC
* *
99697847 GATGCCATGTCCCAGACATAGTCTTACACTGGCTATCAT
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTATCAT
99697886 TAGTTGTGGT
Statistics
Matches: 71, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
48 70 0.99
49 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.29
Consensus pattern (48 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGGCTATCATATCAACGCC
Found at i:99705559 original size:90 final size:90
Alignment explanation
Indices: 99705406--99705572 Score: 246
Period size: 90 Copynumber: 1.9 Consensus size: 90
99705396 GATGCCAAAG
** * * * *
99705406 CCATGTCCCAGACATGGTCTTACATGGGTCTACATATCGATGCCATATCCTAGATATGGTCTTAT
1 CCATGTCCCAGACATGGTCTTACATGGACCTACACATCGATGCCATATCCCAGACATGGTCTTAC
99705471 ACAAAATCTCATGTCGGTGCCGATT
66 ACAAAATCTCATGTCGGTGCCGATT
*
99705496 CCATGTCCCAGACATGGTCTTACATGAGACCT-CACATCGATGCCATGTCCCAGACATGGTCTTA
1 CCATGTCCCAGACATGGTCTTACATG-GACCTACACATCGATGCCATATCCCAGACATGGTCTTA
*
99705560 CACGAAATCTCAT
65 CACAAAATCTCAT
99705573 ATCAACGCCA
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
90 65 0.96
91 3 0.04
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (90 bp):
CCATGTCCCAGACATGGTCTTACATGGACCTACACATCGATGCCATATCCCAGACATGGTCTTAC
ACAAAATCTCATGTCGGTGCCGATT
Found at i:99705609 original size:42 final size:42
Alignment explanation
Indices: 99705496--99705615 Score: 159
Period size: 42 Copynumber: 2.9 Consensus size: 42
99705486 GGTGCCGATT
* * * * *
99705496 CCATGTCCCAGACATGGTCTTACATGAGACCTCACATCGATG
1 CCATGTCCCAGACATGGTCTTACATGAAATCTCATATCAACG
*
99705538 CCATGTCCCAGACATGGTCTTACACGAAATCTCATATCAACG
1 CCATGTCCCAGACATGGTCTTACATGAAATCTCATATCAACG
* * *
99705580 CCATATCCCAGATATGGTCTTACATGAAATCACATA
1 CCATGTCCCAGACATGGTCTTACATGAAATCTCATA
99705616 CCGATGCTGA
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (42 bp):
CCATGTCCCAGACATGGTCTTACATGAAATCTCATATCAACG
Found at i:99705635 original size:48 final size:48
Alignment explanation
Indices: 99705579--99705748 Score: 168
Period size: 48 Copynumber: 3.5 Consensus size: 48
99705569 TCATATCAAC
* *
99705579 GCCATATCCCAGATATGGTCTTACA-T-GAAATCACATACCGATGCTGAT
1 GCCATATCCCAGATATGGTCTTACACTAG-AA-CACATACCAATGCCGAT
* * *
99705627 GCCATATCCCAGATATAGTCTTACACTAGCACACATATCAATGCCGAT
1 GCCATATCCCAGATATGGTCTTACACTAGAACACATACCAATGCCGAT
* * * * **
99705675 GCCATGTCCCAGACATGGTTTTACACTAG--CTATCATATCAACCCCGAT
1 GCCATATCCCAGATATGGTCTTACACTAGAAC-A-CATACCAATGCCGAT
*
99705723 GCCATGTCCCAGATATGGTCTTACAC
1 GCCATATCCCAGATATGGTCTTACAC
99705749 AGGCTATCAT
Statistics
Matches: 105, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
46 1 0.01
47 1 0.01
48 100 0.95
49 2 0.02
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (48 bp):
GCCATATCCCAGATATGGTCTTACACTAGAACACATACCAATGCCGAT
Found at i:99705648 original size:132 final size:137
Alignment explanation
Indices: 99705405--99705749 Score: 330
Period size: 132 Copynumber: 2.5 Consensus size: 137
99705395 GGATGCCAAA
* ** * * *
99705405 GCCATGTCCCAGACATGGTCTTACATGGGTCTACATATCGATGCCATATCCTAGATATGGTCTTA
1 GCCATGTCCCAGACATGGTCTTACACGAATCTACATATCAACGCCATATCCCAGATATGGTCTTA
* * ** * * * *
99705470 TACAAAATCTCATGTCGGTGCCGATTCCATGTCCCAGACATGGTCTTACA-TGAG-AC-C---TC
66 CACAAAATCACATACCGATGCCGATGCCATATCCCAGACATAGTCTTACACT-AGCACACATATC
99705529 ACAT-CGAT
130 A-ATCCGAT
99705537 GCCATGTCCCAGACATGGTCTTACACGAAATCT-CATATCAACGCCATATCCCAGATATGGTCTT
1 GCCATGTCCCAGACATGGTCTTACACG-AATCTACATATCAACGCCATATCCCAGATATGGTCTT
** * *
99705601 ACATGAAATCACATACCGATGCTGATGCCATATCCCAGATATAGTCTTACACTAGCACACATATC
65 ACACAAAATCACATACCGATGCCGATGCCATATCCCAGACATAGTCTTACACTAGCACACATATC
99705666 AATGCCGAT
130 AAT-CCGAT
* * * *
99705675 GCCATGTCCCAGACATGGTTTTACAC-TAGCTATCATATCAACCCCGATGCCATGTCCCAGATAT
1 GCCATGTCCCAGACATGGTCTTACACGAATCTA-CATATCAA---C---GCCATATCCCAGATAT
99705739 GGTCTTACACA
59 GGTCTTACACA
99705750 GGCTATCATT
Statistics
Matches: 172, Mismatches: 24, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
132 95 0.55
133 6 0.03
134 1 0.01
136 5 0.03
137 3 0.02
138 37 0.22
141 1 0.01
144 24 0.14
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (137 bp):
GCCATGTCCCAGACATGGTCTTACACGAATCTACATATCAACGCCATATCCCAGATATGGTCTTA
CACAAAATCACATACCGATGCCGATGCCATATCCCAGACATAGTCTTACACTAGCACACATATCA
ATCCGAT
Found at i:99705755 original size:48 final size:48
Alignment explanation
Indices: 99705624--99705758 Score: 175
Period size: 48 Copynumber: 2.8 Consensus size: 48
99705614 TACCGATGCT
* * * **
99705624 GATGCCATATCCCAGATATAGTCTTACACTAGC-ACACATATCAATGCC
1 GATGCCATGTCCCAGATATGGTCTTACACTAGCTA-TCATATCAACCCC
* *
99705672 GATGCCATGTCCCAGACATGGTTTTACACTAGCTATCATATCAACCCC
1 GATGCCATGTCCCAGATATGGTCTTACACTAGCTATCATATCAACCCC
99705720 GATGCCATGTCCCAGATATGGTCTTACAC-AGGCTATCAT
1 GATGCCATGTCCCAGATATGGTCTTACACTA-GCTATCAT
99705759 TACTTTTGGT
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
47 1 0.01
48 74 0.97
49 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGATATGGTCTTACACTAGCTATCATATCAACCCC
Found at i:99712495 original size:46 final size:43
Alignment explanation
Indices: 99712352--99712487 Score: 123
Period size: 47 Copynumber: 3.0 Consensus size: 43
99712342 CCCGTCCCTA
99712352 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATTT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCA-TT
* * * * *
99712399 CA-CGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATA
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATT
99712445 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT
99712488 CCTAGTGACA
Statistics
Matches: 73, Mismatches: 10, Indels: 14
0.75 0.10 0.14
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 28 0.38
47 29 0.40
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (43 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATT
Found at i:99722744 original size:40 final size:40
Alignment explanation
Indices: 99722700--99722917 Score: 240
Period size: 40 Copynumber: 5.5 Consensus size: 40
99722690 AGTTTAAATA
* * *
99722700 GGGCACGTTTTTGCATTCAGGGGTACTGAAGTACAAACAG
1 GGGCACGTATGTGCATTCAGGGGTACCGAAGTACAAACAG
* * * * *
99722740 GGGCATGTATGTGCATTTAGGGGTACTGAA-TTCAAATAG
1 GGGCACGTATGTGCATTCAGGGGTACCGAAGTACAAACAG
* * * ** *
99722779 GGGCACATATGTGTATTCAAGGGTACCGAAGTGTAAACAA
1 GGGCACGTATGTGCATTCAGGGGTACCGAAGTACAAACAG
* ** *
99722819 GGGCACGCATGTGCATTCAGGGGTACAAAAGTACAAATAG
1 GGGCACGTATGTGCATTCAGGGGTACCGAAGTACAAACAG
* *
99722859 GGGCACGTATGTACATTCAGGGGTACCGAAGTACAAACAT
1 GGGCACGTATGTGCATTCAGGGGTACCGAAGTACAAACAG
*
99722899 GGGCACGTATGTGCGTTCA
1 GGGCACGTATGTGCATTCA
99722918 TACAATAATT
Statistics
Matches: 143, Mismatches: 34, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
39 31 0.22
40 112 0.78
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (40 bp):
GGGCACGTATGTGCATTCAGGGGTACCGAAGTACAAACAG
Found at i:99722887 original size:80 final size:79
Alignment explanation
Indices: 99722695--99722917 Score: 268
Period size: 80 Copynumber: 2.8 Consensus size: 79
99722685 ACCGGAGTTT
* * * * * *
99722695 AAATA-GGGCACGTTTTTGCATTCAGGGGTACTGAAGTACAAACAGGGGCATGTATGTGCATTTA
1 AAATAGGGGCACGTATGTGCATTCAGGGGTACCGAAGTACAAACAAGGGCACGTATGTGCATTCA
** *
99722759 GGGGTACTGAATTC
66 GGGGTACAAAATAC
* * * ** *
99722773 AAATAGGGGCACATATGTGTATTCAAGGGTACCGAAGTGTAAACAAGGGCACGCATGTGCATTCA
1 AAATAGGGGCACGTATGTGCATTCAGGGGTACCGAAGTACAAACAAGGGCACGTATGTGCATTCA
99722838 GGGGTACAAAAGTAC
66 GGGGTACAAAA-TAC
* * *
99722853 AAATAGGGGCACGTATGTACATTCAGGGGTACCGAAGTACAAACATGGGCACGTATGTGCGTTCA
1 AAATAGGGGCACGTATGTGCATTCAGGGGTACCGAAGTACAAACAAGGGCACGTATGTGCATTCA
99722918 TACAATAATT
Statistics
Matches: 119, Mismatches: 24, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
78 5 0.04
79 56 0.47
80 58 0.49
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.23
Consensus pattern (79 bp):
AAATAGGGGCACGTATGTGCATTCAGGGGTACCGAAGTACAAACAAGGGCACGTATGTGCATTCA
GGGGTACAAAATAC
Found at i:99730161 original size:17 final size:17
Alignment explanation
Indices: 99730139--99730187 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
99730129 CATACTATTC
99730139 TCATACATTCAATCATT
1 TCATACATTCAATCATT
*
99730156 TCATACAATC-ATCA-T
1 TCATACATTCAATCATT
99730171 TCA-A-ATTCAATCTATT
1 TCATACATTCAATC-ATT
99730187 T
1 T
99730188 ATCCCTTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
13 3 0.11
14 4 0.15
15 5 0.19
16 6 0.22
17 9 0.33
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (17 bp):
TCATACATTCAATCATT
Found at i:99740937 original size:8 final size:8
Alignment explanation
Indices: 99740924--99740956 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
99740914 TTAGAAATAT
99740924 TTATTTTA
1 TTATTTTA
99740932 TTATTTTA
1 TTATTTTA
99740940 TTATTTTA
1 TTATTTTA
*
99740948 AT-TTTTA
1 TTATTTTA
99740955 TT
1 TT
99740957 CAAACTACTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
7 6 0.26
8 17 0.74
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TTATTTTA
Found at i:99741421 original size:12 final size:12
Alignment explanation
Indices: 99741406--99741431 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
99741396 TATTTATTTT
99741406 ATTATTAGAAAA
1 ATTATTAGAAAA
99741418 ATTATTAGAAAA
1 ATTATTAGAAAA
99741430 AT
1 AT
99741432 CCCTGAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.35
Consensus pattern (12 bp):
ATTATTAGAAAA
Found at i:99752673 original size:42 final size:42
Alignment explanation
Indices: 99752574--99752678 Score: 122
Period size: 42 Copynumber: 2.5 Consensus size: 42
99752564 ATTGATGACG
* * * *
99752574 TATCCCAAATATGGTCTTATACAAATTCTCATTTCGACGCCA
1 TATCCCAAATATGGTCTTACACAAAATCTCATATCAACGCCA
* ** *
99752616 TGT-CCAAGACGTGGTCTTACACAAAATCTCATATCAATGCCA
1 TATCCCAA-ATATGGTCTTACACAAAATCTCATATCAACGCCA
99752658 TATCCCAAATATGGTCTTACA
1 TATCCCAAATATGGTCTTACA
99752679 TTATAACTCA
Statistics
Matches: 50, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
41 4 0.08
42 42 0.84
43 4 0.08
ACGTcount: A:0.32, C:0.26, G:0.11, T:0.30
Consensus pattern (42 bp):
TATCCCAAATATGGTCTTACACAAAATCTCATATCAACGCCA
Found at i:99754353 original size:40 final size:40
Alignment explanation
Indices: 99754298--99754378 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
99754288 CAAGTAACAC
99754298 AAATCTAAGTATATACATACCACCAATTTAGCCACAACCA
1 AAATCTAAGTATATACATACCACCAATTTAGCCACAACCA
99754338 AAATCTAAGTATATACATACCACCAATTTAGCCACAACCA
1 AAATCTAAGTATATACATACCACCAATTTAGCCACAACCA
99754378 A
1 A
99754379 GTCATCCACA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.46, C:0.27, G:0.05, T:0.22
Consensus pattern (40 bp):
AAATCTAAGTATATACATACCACCAATTTAGCCACAACCA
Found at i:99754998 original size:20 final size:20
Alignment explanation
Indices: 99754970--99755013 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
99754960 TACCAACTTG
*
99754970 CAACTTACCATAATCTTTCA
1 CAACATACCATAATCTTTCA
*
99754990 CAACATACCATAGTCTTTCA
1 CAACATACCATAATCTTTCA
99755010 CAAC
1 CAAC
99755014 TTAAACATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.32, G:0.02, T:0.30
Consensus pattern (20 bp):
CAACATACCATAATCTTTCA
Found at i:99755185 original size:42 final size:43
Alignment explanation
Indices: 99755109--99755199 Score: 148
Period size: 42 Copynumber: 2.1 Consensus size: 43
99755099 ATTACATGGG
* *
99755109 ATCTCATATCGATGCCAATATCCCAGTTATGGTCTTACACGAA
1 ATCTCATATCAATGCCAATATCCCAGATATGGTCTTACACGAA
*
99755152 ATCTCATATCAATGCC-ATATCCCAGATATGGTCTTACACGTA
1 ATCTCATATCAATGCCAATATCCCAGATATGGTCTTACACGAA
99755194 ATCTCA
1 ATCTCA
99755200 ACTAACCCTA
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
42 30 0.67
43 15 0.33
ACGTcount: A:0.31, C:0.26, G:0.12, T:0.31
Consensus pattern (43 bp):
ATCTCATATCAATGCCAATATCCCAGATATGGTCTTACACGAA
Found at i:99762339 original size:44 final size:45
Alignment explanation
Indices: 99762272--99762379 Score: 139
Period size: 44 Copynumber: 2.4 Consensus size: 45
99762262 TGTCTTTGAC
** * *
99762272 ATGGACTTACATGAATTATTCCTGTCTCC-AATGCCATA-TATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCGAA-GCCATATTATAAT
*
99762316 ATGGACTTACATGGCTCAATCCTGTCTCCGAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCGAAGCCATA-TTATAAT
99762362 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
99762380 TTTCTGTTTT
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
44 31 0.55
45 2 0.04
46 23 0.41
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (45 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCGAAGCCATATTATAAT
Found at i:99767716 original size:41 final size:41
Alignment explanation
Indices: 99767571--99767727 Score: 133
Period size: 41 Copynumber: 3.8 Consensus size: 41
99767561 ACTTTTAATA
*
99767571 ATTCACCAGCATAAAGCCTGCTAGGCAT-AAGCCTGAATTAC
1 ATTCACCAGCACAAAGCCTGCTAGGCATAAAGCCTG-ATTAC
* * * * * * *
99767612 A--CACCGGCTCAAGGCCTGCTAGACTTAAAGTCTGATTTTAT
1 ATTCACCAGCACAAAGCCTGCTAGGCATAAAGCCTGA--TTAC
* *
99767653 ATTCATCGGCA-ATAAGCCTGCTAGGCATAAAGCCTGATTAC
1 ATTCACCAGCACA-AAGCCTGCTAGGCATAAAGCCTGATTAC
* * *
99767694 ATTCACCAGCACAATGCTTGCTAGGCTTAAAGCC
1 ATTCACCAGCACAAAGCCTGCTAGGCATAAAGCC
99767728 CGAATATCAC
Statistics
Matches: 89, Mismatches: 20, Indels: 14
0.72 0.16 0.11
Matches are distributed among these distances:
39 20 0.22
40 6 0.07
41 35 0.39
42 2 0.02
43 26 0.29
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (41 bp):
ATTCACCAGCACAAAGCCTGCTAGGCATAAAGCCTGATTAC
Found at i:99772121 original size:23 final size:23
Alignment explanation
Indices: 99772091--99772137 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
99772081 TATACCATAT
99772091 TTACACAACTCAAAAGTAACAAA
1 TTACACAACTCAAAAGTAACAAA
99772114 TTACACAACTCAAAAGTAACAAA
1 TTACACAACTCAAAAGTAACAAA
99772137 T
1 T
99772138 AGATGTCCGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.55, C:0.21, G:0.04, T:0.19
Consensus pattern (23 bp):
TTACACAACTCAAAAGTAACAAA
Done.