Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 298 of 349
Found at i:99775181 original size:31 final size:31
Alignment explanation
Indices: 99775143--99775206 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
99775133 CCTTTTCATA
99775143 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
** *
99775174 TTTCATATTTCATATTATTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
99775205 TT
1 TT
99775207 ACTGTAAACA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:99775474 original size:23 final size:23
Alignment explanation
Indices: 99775420--99775537 Score: 193
Period size: 23 Copynumber: 5.1 Consensus size: 23
99775410 CCTATCCTCT
*
99775420 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
99775443 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
99775467 TTTAATAACT-GGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
99775489 TTTAATAACTAGGGCAGAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
99775512 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
99775535 TTT
1 TTT
99775538 TACACTTCCT
Statistics
Matches: 89, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
22 22 0.25
23 45 0.51
24 22 0.25
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.27
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:99775490 original size:46 final size:47
Alignment explanation
Indices: 99775420--99775539 Score: 199
Period size: 45 Copynumber: 2.6 Consensus size: 47
99775410 CCTATCCTCT
* * *
99775420 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCAGAAGCCC
99775467 TTTAATAACT-GGGCATAAGCCC-TTTAATAACTAGGGCAGAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCAGAAGCCC
99775512 TTTAATAACTGGGGCATAAGCCCTTTTA
1 TTTAATAACTGGGGCATAAGCCCTTTTA
99775540 CACTTCCTCC
Statistics
Matches: 68, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
45 31 0.46
46 23 0.34
47 14 0.21
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.28
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCAGAAGCCC
Found at i:99775613 original size:20 final size:20
Alignment explanation
Indices: 99775588--99775654 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
99775578 TTGTGATTAC
99775588 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
99775608 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
99775628 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
99775648 ACCATGT
1 ATCATGT
99775655 TTATCAAATT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:99775619 original size:11 final size:11
Alignment explanation
Indices: 99775588--99775643 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
99775578 TTGTGATTAC
99775588 ATCATGTGCAT
1 ATCATGTGCAT
*
99775599 ATCA--TACAT
1 ATCATGTGCAT
99775608 ATCATGTGCAT
1 ATCATGTGCAT
*
99775619 ATCA--TACAT
1 ATCATGTGCAT
*
99775628 GTCATGTGCAT
1 ATCATGTGCAT
99775639 ATCAT
1 ATCAT
99775644 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:99779681 original size:37 final size:37
Alignment explanation
Indices: 99779623--99779800 Score: 284
Period size: 37 Copynumber: 4.8 Consensus size: 37
99779613 GCACAGACGA
* * * *
99779623 AATCTCCACATGAAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
99779660 AATCTCCACACGTAGTCATCGGGTCTTACCTGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
99779697 AATCTCCACACGTAGTTATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
99779734 AATCTCCACACGTAGTCATTGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
99779771 AATCTCCACACGTAGTAATCGGGTCTTACC
1 AATCTCCACACGTAGTCATCGGGTCTTACC
99779801 AAGTTTCATG
Statistics
Matches: 130, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 130 1.00
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:99780061 original size:47 final size:47
Alignment explanation
Indices: 99779999--99780386 Score: 492
Period size: 47 Copynumber: 8.1 Consensus size: 47
99779989 ACACGTTTCG
* * * **
99779999 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
99780046 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
99780093 CATTGGCCATTCGGCCTTATCACACATACGCAAGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
99780140 C-TTGG-CATTCGGCCTTATCACACATACGAATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ** *
99780185 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C----ACATACGCATGTTCACATTCATCA
*
99780238 CATTGGCCATTCAGCCATTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCC-TTATCACACATACGCATGTTCACATTCATCA
***
99780286 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
*
99780337 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
99780384 CAT
1 CAT
99780387 AAAATCCTAA
Statistics
Matches: 300, Mismatches: 28, Indels: 26
0.85 0.08 0.07
Matches are distributed among these distances:
45 39 0.13
46 8 0.03
47 132 0.44
48 35 0.12
49 1 0.00
51 44 0.15
52 1 0.00
53 34 0.11
54 6 0.02
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:99780262 original size:101 final size:98
Alignment explanation
Indices: 99779999--99780386 Score: 562
Period size: 92 Copynumber: 4.0 Consensus size: 98
99779989 ACACGTTTCG
* *
99779999 CATTAGCCATTCGGCCTTA-C-CACATATAT-T-CATGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
* * *
99780060 CCTTATCTCATATATGCATGTTCACATTCATCA
66 CCTTATCACACATACGCATGTTCACATTCATCA
** *
99780093 CATTGGCCATTCGGCCTTATCACAC----ATACGCAAGTTCACATTCATCAC-TTGG-CATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
*
99780152 CCTTATCACACATACGAATGTTCACATTCATCA
66 CCTTATCACACATACGCATGTTCACATTCATCA
*
99780185 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCACATTGGCCATTC
1 CATTGGCCATTCGGCCTTATCA--CACATATATATACAGGTTCACATTCATCACATTGGCCATTC
*
99780250 AGCCATTATCACACATACGCATGTTCACATTCATCA
64 GGCC-TTATCACACATACGCATGTTCACATTCATCA
*
99780286 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
*
99780351 CCTTATCACACATACGCATGTTCACATCCATCA
66 CCTTATCACACATACGCATGTTCACATTCATCA
99780384 CAT
1 CAT
99780387 AAAATCCTAA
Statistics
Matches: 264, Mismatches: 17, Indels: 22
0.87 0.06 0.07
Matches are distributed among these distances:
92 60 0.23
93 4 0.02
94 37 0.14
95 1 0.00
96 3 0.01
98 53 0.20
99 46 0.17
100 8 0.03
101 52 0.20
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (98 bp):
CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
CCTTATCACACATACGCATGTTCACATTCATCA
Found at i:99783485 original size:40 final size:40
Alignment explanation
Indices: 99783342--99783491 Score: 214
Period size: 39 Copynumber: 3.8 Consensus size: 40
99783332 CCAGCATGAT
* * * *
99783342 TGCTCTTCGGGACCTAGCCCGGATAGAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
99783382 TGCTCTTTGGG-TTTAGCACAGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
99783421 TGCTCTTC-GGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
99783460 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
99783492 CTCAATTCTC
Statistics
Matches: 96, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
38 2 0.02
39 61 0.64
40 33 0.34
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:99784864 original size:41 final size:37
Alignment explanation
Indices: 99784797--99784916 Score: 183
Period size: 41 Copynumber: 3.2 Consensus size: 37
99784787 TCACATCATC
99784797 TACCC-GACAT-ATCT-CACACGTAGTCATCGGGTCT
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTCT
99784831 TACCCGGACATAATCTCCACACGTACGTAGTCATCGGGTCT
1 TACCCGGACATAATCT-C-CAC--ACGTAGTCATCGGGTCT
99784872 TACCCGGACATAATCTCCACACGTAGTCATCGGGTCT
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTCT
99784909 TACCCGGA
1 TACCCGGA
99784917 ATATATTCCA
Statistics
Matches: 79, Mismatches: 0, Indels: 11
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.06
35 5 0.06
36 4 0.05
37 25 0.32
39 6 0.08
40 1 0.01
41 33 0.42
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTCT
Found at i:99785296 original size:138 final size:139
Alignment explanation
Indices: 99785140--99785806 Score: 763
Period size: 138 Copynumber: 4.8 Consensus size: 139
99785130 ATATATTCAT
99785140 GTCACATT--TCACATTGGCCATTCGGCCTTATCACATATATCATGTTCACATTCATCACATT-G
1 GTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATCATGTTCACATTCATCACATTGG
*
99785202 CCATTC-GCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
66 CCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
**
99785266 CATATATCAG
131 CATA-CGCAG
*
99785276 GTCACATTCATCACATTGGCCATTCGGCCTTATCACGCATATATATATCAGGTTCACATTCATCA
1 GTCACATTCATCACATTGGCCATTCGGCCTTATCA--C----ATATATCATGTTCACATTCATCA
99785341 CATTGGCCATTCGG-CTTATCACACATACGCATG--CACATTC-TCACATTGGCCATTCGGCCTT
60 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
99785402 ATCACACATACGCAT
125 ATCACACATACGCAG
* *
99785417 GT-ACA-TCATCACA-TGGCCATTCGGCCTTATCACATATATATATACAGGTCACA-TCATCA-A
1 GTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAT-CAT---GTTCACATTCATCACA
* * ***
99785477 TTGTCCATTCGGCCTTATCACGCATATATATACAGTTCACATTCATCACATT-GCCATTCGGCCT
62 TTGGCCATTCGGCCTTATCACACATACGCAT---GTTCACATTCATCACATTGGCCATTCGGCCT
99785541 TATCACA-ATACGCATG
124 TATCACACATACGCA-G
* **
99785557 TTCACATTCATCACATTGGCCATTCGG-CTTATCACACATATAATACGGGTTCACATTCATCACA
1 GTCACATTCATCACATTGGCCATTCGGCCTTAT--CACATAT-AT-CATGTTCACATTCATCACA
99785621 TTGGCCATTCGGCCTTATCACACATACGCATGTT--CA-TCATCACA-TGGCCATTC-GCCTTAT
62 TTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT
99785681 CACACATACGCAG
127 CACACATACGCAG
*
99785694 TTCACATTCATCACATTGGCCA-TCGGCCTTATCAACACATATAT-ATACGGGGTTCAC-TTCAT
1 GTCACATTCATCACATTGGCCATTCGGCCTTAT---CACATATATCAT-----GTTCACATTCAT
*
99785756 CACATTGGCCATTCGGCC-TATCACACATACGCATGTTCACATCCATCACAT
58 CACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
99785807 AAAATCCTAA
Statistics
Matches: 460, Mismatches: 28, Indels: 80
0.81 0.05 0.14
Matches are distributed among these distances:
132 6 0.01
133 1 0.00
134 12 0.03
135 20 0.04
136 19 0.04
137 42 0.09
138 94 0.20
139 40 0.09
140 39 0.08
141 24 0.05
142 50 0.11
143 24 0.05
144 60 0.13
145 28 0.06
146 1 0.00
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.30
Consensus pattern (139 bp):
GTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATCATGTTCACATTCATCACATTGG
CCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
CATACGCAG
Found at i:99785640 original size:235 final size:229
Alignment explanation
Indices: 99785141--99785806 Score: 822
Period size: 235 Copynumber: 2.9 Consensus size: 229
99785131 TATATTCATG
* * *
99785141 TCACATT-TCACATTGGCCATTCGGCCTTATCACATATA-TCATGTTCACATTCATCACATTGCC
1 TCACATTCTCACATTGGCCATTCGGCCTTATCACACATACGCATG-T-ACA-TCATCACATGGCC
* *
99785204 ATTCGCCTTATCAC-ACATAT-GCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA-CA
63 ATTCGCCTTATCACAATATATATCA-GTTCACATTCATCACATTGGCCATTCGGCCTTATCACCA
* * * ** *
99785266 CATATAT-CAGGTCACATTCATCACATTGGCCATTCGGCCTTATCACGCATATATATATCAGGTT
127 TATATATACAGTTCACATTCATCACATTGGCCATTCGGCCTTATCA--C--ACATA-CGCATGTT
99785330 CACATTCATCACATTGGCCATTCGGCTTATCACACATACGCAT
187 CACATTCATCACATTGGCCATTCGGCTTATCACACATACGCAT
*
99785373 GCACATTCTCACATTGGCCATTCGGCCTTATCACACATACGCATGTACATCATCACATGGCCATT
1 TCACATTCTCACATTGGCCATTCGGCCTTATCACACATACGCATGTACATCATCACATGGCCATT
* *
99785438 CGGCCTTATCACATATATATATACAGGTCACA-TCATCA-ATTGTCCATTCGGCCTTATCACGCA
66 C-GCCTTATCACA-ATATATAT-CAGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC-CA
99785501 TATATATACAGTTCACATTCATCACATT-GCCATTCGGCCTTATCACA-ATACGCATGTTCACAT
127 TATATATACAGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACAT
**
99785564 TCATCACATTGGCCATTCGGCTTATCACACATATAATACGGGT
192 TCATCACATTGGCCATTCGGCTTATCACAC-----ATACGCAT
*
99785607 TCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCATCATCACATGGCCAT
1 TCACATTC-TCACATTGGCCATTCGGCCTTATCACACATACGCATGTACATCATCACATGGCCAT
* **
99785672 TCGCCTTATCAC-ACATA-CGCAGTTCACATTCATCACATTGGCCA-TCGGCCTTATCAACACAT
65 TCGCCTTATCACAATATATATCAGTTCACATTCATCACATTGGCCATTCGGCCTTATC-AC-CAT
*
99785734 ATATATACGGGGTTCAC-TTCATCACATTGGCCATTCGGCC-TATCACACATACGCATGTTCACA
128 ATATATAC--AGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACA
*
99785797 TCCATCACAT
191 TTCATCACAT
99785807 AAAATCCTAA
Statistics
Matches: 386, Mismatches: 25, Indels: 44
0.85 0.05 0.10
Matches are distributed among these distances:
229 40 0.10
230 11 0.03
231 34 0.09
232 43 0.11
233 70 0.18
234 79 0.20
235 88 0.23
236 21 0.05
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.30
Consensus pattern (229 bp):
TCACATTCTCACATTGGCCATTCGGCCTTATCACACATACGCATGTACATCATCACATGGCCATT
CGCCTTATCACAATATATATCAGTTCACATTCATCACATTGGCCATTCGGCCTTATCACCATATA
TATACAGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCAT
CACATTGGCCATTCGGCTTATCACACATACGCAT
Found at i:99786181 original size:10 final size:11
Alignment explanation
Indices: 99786146--99786180 Score: 70
Period size: 11 Copynumber: 3.2 Consensus size: 11
99786136 ATCCATAAAA
99786146 TTTCTTAAATT
1 TTTCTTAAATT
99786157 TTTCTTAAATT
1 TTTCTTAAATT
99786168 TTTCTTAAATT
1 TTTCTTAAATT
99786179 TT
1 TT
99786181 CCCCTGTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.66
Consensus pattern (11 bp):
TTTCTTAAATT
Found at i:99789208 original size:79 final size:79
Alignment explanation
Indices: 99789124--99789294 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
99789114 GGACTAAGAT
*
99789124 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACT
* *
99789187 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * *
99789203 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAA
*
99789268 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
99789282 CCGAAGGCATTTG
1 CCGAAGGCATTTG
99789295 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
79 68 0.86
80 11 0.14
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:99789219 original size:40 final size:40
Alignment explanation
Indices: 99789124--99789294 Score: 222
Period size: 39 Copynumber: 4.3 Consensus size: 40
99789114 GGACTAAGAT
99789124 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAG-C
1 CCGAAGGCATTTGTGCGAGATACTAAA-TCCGGGTTAAGTC
*
99789163 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
* * * *
99789203 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
99789243 CCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
99789282 CCGAAGGCATTTG
1 CCGAAGGCATTTG
99789295 AACGAGGAGC
Statistics
Matches: 118, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
39 67 0.57
40 51 0.43
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:99789312 original size:79 final size:80
Alignment explanation
Indices: 99789151--99789327 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
99789141 AGATACAAAT
* * *
99789151 TCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
99789215 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
99789230 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
99789294 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
99789309 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
99789328 TACGTGATTT
Statistics
Matches: 81, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
78 15 0.19
79 58 0.72
80 8 0.10
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:99792039 original size:40 final size:40
Alignment explanation
Indices: 99791888--99792039 Score: 205
Period size: 40 Copynumber: 3.8 Consensus size: 40
99791878 CCAGCATGAT
* * * *
99791888 TGCTCTTCGAGACCTAGCCCGGATAGAACACCAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATATATCACTAGCACGAA
* * ** *
99791928 TGCTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATATATCACTAGCACGAA
*
99791968 TGCTCTTCGAAACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATATATCACTAGCACGAA
*
99792008 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGAGACTTAGCCCGGATATATCACT
99792040 CTCAATTCTC
Statistics
Matches: 95, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 95 1.00
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGAGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:99793460 original size:36 final size:37
Alignment explanation
Indices: 99793307--99793523 Score: 357
Period size: 37 Copynumber: 5.9 Consensus size: 37
99793297 GCTCAGACGA
* * * *
99793307 AATCTCCACATGAAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
99793344 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
99793381 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
99793418 AATCTCCACACGTAGTCATCGGGTCTTACCC-GACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
99793454 AATCTCCATACGTAGTCATC-GGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* *
99793490 AATCTCCACTCGTAGTAATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
99793524 ATATATTTCC
Statistics
Matches: 170, Mismatches: 8, Indels: 4
0.93 0.04 0.02
Matches are distributed among these distances:
35 10 0.06
36 46 0.27
37 114 0.67
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:99793794 original size:47 final size:47
Alignment explanation
Indices: 99793732--99794411 Score: 894
Period size: 47 Copynumber: 14.1 Consensus size: 47
99793722 ACACGTTTCG
* * * **
99793732 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
99793779 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
99793826 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ** *
99793873 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C--ACATACGCATGTTCACATTCATCA
* ** *
99793924 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C----ACATACGCATGTTCACATTCATCA
99793977 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
99794024 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
*
99794075 CATTGGCCATTC-GCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
99794121 CAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
** *
99794168 CATTGGCCATTCGGCCTTATCACACATATATATACAAGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACAC----ATACGCATGTTCACATTCATCA
*
99794219 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
99794266 CAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
** **
99794313 CATTGGCCATTCGGCCTTATCACACATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACAC--ATACGCATGTTCACATTCATCA
*
99794362 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
99794409 CAT
1 CAT
99794412 AAAATCCTAA
Statistics
Matches: 572, Mismatches: 44, Indels: 34
0.88 0.07 0.05
Matches are distributed among these distances:
46 24 0.04
47 323 0.56
49 44 0.08
50 17 0.03
51 116 0.20
53 48 0.08
ACGTcount: A:0.27, C:0.30, G:0.13, T:0.30
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:99793920 original size:145 final size:145
Alignment explanation
Indices: 99793732--99794411 Score: 1104
Period size: 145 Copynumber: 4.7 Consensus size: 145
99793722 ACACGTTTCG
* *
99793732 CATTAGCCATTCGGCCTTA-C-CACATATAT-T-CATGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
* * * *
99793793 CCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCA
66 CCTTATCACACATACGCATGTTCACATCCATCACATTGGCCATTCGGCCTTATCACACATACGCA
99793858 TGTTCACATTCATCA
131 TGTTCACATTCATCA
*
99793873 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
* ** * *
99793938 CCTTATCACGCATATATATATACAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
66 CCTTATCA--C----ACATACGCATGTTCACATCCATCACATTGGCCATTCGGCCTTATCACACA
99794003 TACGCATGTTCACATTCATCA
125 TACGCATGTTCACATTCATCA
*
99794024 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTC-G
1 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
*
99794088 CCTTATCACACATACGCATGTTCACATCCATCACAGTGGCCATTCGGCCTTATCACACATACGCA
66 CCTTATCACACATACGCATGTTCACATCCATCACATTGGCCATTCGGCCTTATCACACATACGCA
99794153 TGTTCACATTCATCA
131 TGTTCACATTCATCA
*
99794168 CATTGGCCATTCGGCCTTATCACACATATATATACAAGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
*
99794233 CCTTATCACACATACGCATGTTCACATCCATCACAGTGGCCATTCGGCCTTATCACACATACGCA
66 CCTTATCACACATACGCATGTTCACATCCATCACATTGGCCATTCGGCCTTATCACACATACGCA
99794298 TGTTCACATTCATCA
131 TGTTCACATTCATCA
*
99794313 CATTGGCCATTCGGCCTTATCACAC--ATATATACGGGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
99794376 CCTTATCACACATACGCATGTTCACATCCATCACAT
66 CCTTATCACACATACGCATGTTCACATCCATCACAT
99794412 AAAATCCTAA
Statistics
Matches: 509, Mismatches: 19, Indels: 20
0.93 0.03 0.04
Matches are distributed among these distances:
141 18 0.04
142 1 0.00
143 79 0.16
144 127 0.25
145 143 0.28
147 1 0.00
148 1 0.00
150 9 0.02
151 130 0.26
ACGTcount: A:0.27, C:0.30, G:0.13, T:0.30
Consensus pattern (145 bp):
CATTGGCCATTCGGCCTTATCACACATATATATACAGGTTCACATTCATCACATTGGCCATTCGG
CCTTATCACACATACGCATGTTCACATCCATCACATTGGCCATTCGGCCTTATCACACATACGCA
TGTTCACATTCATCA
Found at i:99793941 original size:98 final size:95
Alignment explanation
Indices: 99793732--99794411 Score: 877
Period size: 98 Copynumber: 7.0 Consensus size: 95
99793722 ACACGTTTCG
* * * *
99793732 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
* * *
99793797 ATC-TCATATATGCATGTTCACATTCATCA
66 ATCACCACATACGCATGTTCACATTCATCA
**
99793826 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
* ** *
99793891 ATCACGCATATATATACAGGTTCACATTCATCA
66 ATCAC-C--ACATACGCATGTTCACATTCATCA
* *
99793924 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCACATTGGCCATTC
1 CATTGGCCATTCGGCCTTATCA--C----ACATATACATGTTCACATTCATCACATTGGCCATTC
99793989 GGCCTTATCA-CACATACGCATGTTCACATTCATCA
60 GGCCTTATCACCACATACGCATGTTCACATTCATCA
*
99794024 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTC-G
1 CATTGGCCATTCGGCCTTATCACACATATACAT----GTTCACATTCATCACATTGGCCATTCGG
*
99794088 CCTTATCA-CACATACGCATGTTCACATCCATCA
62 CCTTATCACCACATACGCATGTTCACATTCATCA
* **
99794121 CAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
* ** *
99794186 ATCACACATATATATACAAGTTCACATTCATCA
66 ATCAC-C--ACATACGCATGTTCACATTCATCA
** * *
99794219 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACAGTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
99794284 ATCA-CACATACGCATGTTCACATTCATCA
66 ATCACCACATACGCATGTTCACATTCATCA
**
99794313 CATTGGCCATTCGGCCTTATCACACATATATACGGGTTCACATTCATCACATTGGCCATTCGGCC
1 CATTGGCCATTCGGCCTTATCACAC--ATATACATGTTCACATTCATCACATTGGCCATTCGGCC
*
99794378 TTATCA-CACATACGCATGTTCACATCCATCA
64 TTATCACCACATACGCATGTTCACATTCATCA
99794409 CAT
1 CAT
99794412 AAAATCCTAA
Statistics
Matches: 522, Mismatches: 43, Indels: 40
0.86 0.07 0.07
Matches are distributed among these distances:
93 26 0.05
94 124 0.24
96 68 0.13
97 62 0.12
98 156 0.30
100 43 0.08
102 1 0.00
104 42 0.08
ACGTcount: A:0.27, C:0.30, G:0.13, T:0.30
Consensus pattern (95 bp):
CATTGGCCATTCGGCCTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACCACATACGCATGTTCACATTCATCA
Found at i:99797494 original size:79 final size:81
Alignment explanation
Indices: 99797385--99797567 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
99797375 TACTCGTTCA
* *
99797385 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
99797448 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
99797465 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
99797528 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
99797544 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
99797568 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:99797567 original size:40 final size:40
Alignment explanation
Indices: 99797364--99797567 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
99797354 CGGAATTTAA
** *
99797364 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
99797404 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
99797444 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
99797483 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
99797523 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
99797563 CCGGA
1 CCGGA
99797568 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:99805470 original size:79 final size:81
Alignment explanation
Indices: 99805361--99805543 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
99805351 TACTCGTTCA
* *
99805361 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
99805424 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
99805441 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
99805504 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
99805520 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
99805544 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:99805543 original size:40 final size:40
Alignment explanation
Indices: 99805340--99805543 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
99805330 CGGAATTTAA
** *
99805340 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
99805380 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
99805420 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
99805459 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
99805499 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
99805539 CCGGA
1 CCGGA
99805544 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:99806190 original size:37 final size:37
Alignment explanation
Indices: 99806140--99806227 Score: 176
Period size: 37 Copynumber: 2.4 Consensus size: 37
99806130 AGGCTACCTA
99806140 TGGCCGAACATACACATAACTTATGTACTTATTCATG
1 TGGCCGAACATACACATAACTTATGTACTTATTCATG
99806177 TGGCCGAACATACACATAACTTATGTACTTATTCATG
1 TGGCCGAACATACACATAACTTATGTACTTATTCATG
99806214 TGGCCGAACATACA
1 TGGCCGAACATACA
99806228 TGTCTATGTT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 51 1.00
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.30
Consensus pattern (37 bp):
TGGCCGAACATACACATAACTTATGTACTTATTCATG
Found at i:99811039 original size:31 final size:31
Alignment explanation
Indices: 99811001--99811064 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
99810991 CCTTTTCATA
99811001 TTTCATATTTCATAACACTAGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
** *
99811032 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
99811063 TT
1 TT
99811065 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTAGGCCGAAGCCT
Found at i:99811333 original size:23 final size:23
Alignment explanation
Indices: 99811279--99811419 Score: 248
Period size: 23 Copynumber: 6.1 Consensus size: 23
99811269 CCTAGCCTCT
*
99811279 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
99811302 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
99811326 TTTAATAACT-GGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
99811348 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
99811371 TTCAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
99811394 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
99811417 TTT
1 TTT
99811420 CACACTTCCT
Statistics
Matches: 113, Mismatches: 3, Indels: 3
0.95 0.03 0.03
Matches are distributed among these distances:
22 22 0.19
23 69 0.61
24 22 0.19
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:99811495 original size:20 final size:20
Alignment explanation
Indices: 99811470--99811536 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
99811460 TTGTGATTAC
99811470 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
99811490 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
99811510 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
99811530 ACCATGT
1 ATCATGT
99811537 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:99811501 original size:11 final size:11
Alignment explanation
Indices: 99811470--99811525 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
99811460 TTGTGATTAC
99811470 ATCATGTGCAT
1 ATCATGTGCAT
*
99811481 ATCA--TACAT
1 ATCATGTGCAT
99811490 ATCATGTGCAT
1 ATCATGTGCAT
*
99811501 ATCA--TACAT
1 ATCATGTGCAT
*
99811510 GTCATGTGCAT
1 ATCATGTGCAT
99811521 ATCAT
1 ATCAT
99811526 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:99831988 original size:20 final size:20
Alignment explanation
Indices: 99831963--99832006 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
99831953 GGACACAGGT
* *
99831963 GTGTCCCCAGCCATACGGGC
1 GTGTCCCAAGCCACACGGGC
99831983 GTGTCCCAAGCCACACGGGC
1 GTGTCCCAAGCCACACGGGC
99832003 GTGT
1 GTGT
99832007 GAGACTACGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.16, C:0.36, G:0.32, T:0.16
Consensus pattern (20 bp):
GTGTCCCAAGCCACACGGGC
Found at i:99835539 original size:49 final size:49
Alignment explanation
Indices: 99835475--99835706 Score: 257
Period size: 49 Copynumber: 4.7 Consensus size: 49
99835465 CTGGTACGCA
* * *
99835475 TAGTAGCTTGCACTTAGTACTAAACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
* * * * *
99835524 TAGTAGCCTACACTTAGTACTACACACGTGACCTAATCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCCGGTACACG
* * * * *
99835574 TAGTAGCCTGCACTTAGTTCTACACACGTGATCGAAGTTATCGGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACACG
* * ** *
99835625 TAGTAGCCTGCCCTTAGTACTACACATGCGACCAAAAATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
* *
99835674 TAGTAGCTTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
99835707 TCACAATAGA
Statistics
Matches: 151, Mismatches: 29, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
49 66 0.44
50 47 0.31
51 38 0.25
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACG
Found at i:99835704 original size:100 final size:99
Alignment explanation
Indices: 99835475--99835706 Score: 288
Period size: 101 Copynumber: 2.3 Consensus size: 99
99835465 CTGGTACGCA
* * * *
99835475 TAGTAGCTTGCACTTAGTACTAAACATGCGACCAATTATCCGGTACACGTAGTAGCCTACACTTA
1 TAGTAGCTTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCTACACTTA
* ** *
99835540 GTACTACACACGTGACCTAATCATCTGATACACG
66 GTACTACACACGCGACCTAAAAATCAGATACACG
* * * * * *
99835574 TAGTAGCCTGCACTTAGTTCTACACACGTGATCGAAGTTATCGGGTACACATAGTAGCCTGCCCT
1 TAGTAGCTTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACATAGTAGCCTACACT
*
99835639 TAGTACTACACATGCGACC-AAAAATCCAG-TACACG
64 TAGTACTACACACGCGACCTAAAAAT-CAGATACACG
99835674 TAGTAGCTTGCACTTAGTACTACACACGTGACC
1 TAGTAGCTTGCACTTAGTACTACACACGTGACC
99835707 TCACAATAGA
Statistics
Matches: 112, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
99 27 0.24
100 42 0.38
101 43 0.38
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCTTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCTACACTTA
GTACTACACACGCGACCTAAAAATCAGATACACG
Found at i:99838274 original size:17 final size:17
Alignment explanation
Indices: 99838252--99838285 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
99838242 TATTTGAAAG
*
99838252 TCAGAATTTTTATATCC
1 TCAGAATTTTTACATCC
99838269 TCAGAATTTTTACATCC
1 TCAGAATTTTTACATCC
99838286 AATAGAGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.21, G:0.06, T:0.44
Consensus pattern (17 bp):
TCAGAATTTTTACATCC
Found at i:99844755 original size:90 final size:93
Alignment explanation
Indices: 99844553--99844763 Score: 252
Period size: 94 Copynumber: 2.3 Consensus size: 93
99844543 TGCACCAATT
*
99844553 TAAGACATGTCTGGGACATGCATCGGCCACATAATGAGAGCCAGTGTAAGACCATGTCTGGGACA
1 TAAGACATGTCTGGGACATGCATCGGCCACATAATGAGAGCCAGTGTAAGACCATGTCTAGGACA
*
99844618 TGGCATCGGTATTGAGACGAGTGCTAGTG
66 TGGCATCGCTATTGAGAC-AGTGCTAGTG
* * * * ** *
99844647 TAAGAAATGTCTGGGACATGCATTGGCCTCGA-GATGTTAGCCAGTGTTAGA-CATGTCTAGGAC
1 TAAGACATGTCTGGGACATGCATCGGCCAC-ATAATGAGAGCCAGTGTAAGACCATGTCTAGGAC
* *
99844710 AT-GCGTCGACTATTG-GA-TGTGCTAGTG
65 ATGGCATCG-CTATTGAGACAGTGCTAGTG
*
99844737 TAAGACATGTCAGGGACATGCATCGGC
1 TAAGACATGTCTGGGACATGCATCGGC
99844764 ACGGTTACAT
Statistics
Matches: 101, Mismatches: 14, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
90 33 0.33
92 7 0.07
93 18 0.18
94 42 0.42
95 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (93 bp):
TAAGACATGTCTGGGACATGCATCGGCCACATAATGAGAGCCAGTGTAAGACCATGTCTAGGACA
TGGCATCGCTATTGAGACAGTGCTAGTG
Found at i:99852417 original size:47 final size:48
Alignment explanation
Indices: 99852349--99852659 Score: 210
Period size: 47 Copynumber: 6.6 Consensus size: 48
99852339 TTTTTGTGCT
*
99852349 AGTGTAAGA-CATGTCTAGGACAT-GCATCAGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGAGCC
* * *
99852395 AGTGTAAGACCATGTTTGGGACATGGCATCAG---CATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATT---ATGAGAGCC
** * *
99852443 AGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCTCGA-GATGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCAC-ATTATG-AGAGCC
* * * *
99852489 AGTGTAAGA-CATGTTTGGGACAT-GCATCAGCTACA--A-GACGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGA-GAGCC
* * * * *
99852533 AATGTAAAACCATGTCTGGGACATGGCATC-GGCACGGATATGTGAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCAC--AT-TATGAGAGCC
**
99852583 AGTGTAAGACCATGTCTGGGACATGGCATC-G---GTTTAATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATT-AT-GA-GAGCC
99852630 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
99852660 GACATTATAC
Statistics
Matches: 212, Mismatches: 30, Indels: 45
0.74 0.10 0.16
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 11 0.05
45 23 0.11
46 55 0.26
47 61 0.29
48 23 0.11
49 1 0.00
50 34 0.16
51 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGCCACATTATGAGAGCC
Found at i:99852660 original size:47 final size:47
Alignment explanation
Indices: 99852388--99852660 Score: 213
Period size: 47 Copynumber: 5.8 Consensus size: 47
99852378 GCCACATTAT
* * * *
99852388 GAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCATTGAGA-C
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-G-GTCGAGATG
* *
99852436 GAGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCTCGAGATG
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG--TCGAGATG
* * * * * *
99852483 TA-AGCCAGTGTAAGA-CATGTTTGGGACAT-GCATCAG-CTACA-A
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTCGAGATG
* * * * * *
99852525 GACGTGTCAATGTAAAACCATGTCTGGGACATGGCATCGGCACGGATATG
1 GA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-TC-GAGATG
* **
99852575 TGAGAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGTTTA-ATG
1 -GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTCGAGATG
99852622 GATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
99852661 ACATTATACC
Statistics
Matches: 181, Mismatches: 31, Indels: 27
0.76 0.13 0.11
Matches are distributed among these distances:
42 1 0.01
43 3 0.02
44 9 0.05
45 14 0.08
46 47 0.26
47 52 0.29
48 17 0.09
49 2 0.01
50 34 0.19
51 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (47 bp):
GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTCGAGATG
Found at i:99853778 original size:20 final size:21
Alignment explanation
Indices: 99853739--99853778 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
99853729 GTTATAATGA
99853739 CCACACAGGCGTGTTGCCCTT
1 CCACACAGGCGTGTTGCCCTT
*
99853760 CCACACGGGCGTG-TGCCCT
1 CCACACAGGCGTGTTGCCCT
99853779 ATTACAAGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.12, C:0.40, G:0.28, T:0.20
Consensus pattern (21 bp):
CCACACAGGCGTGTTGCCCTT
Found at i:99857055 original size:48 final size:47
Alignment explanation
Indices: 99856982--99857450 Score: 382
Period size: 48 Copynumber: 9.7 Consensus size: 47
99856972 TACGTAAGCC
*
99856982 AGTGTAAGACCATGTTTGGAACATGGCATCGACATTGATATGAGAGCT
1 AGTGTAAGACCATGTTTGG-ACATGGCATCGGCATTGATATGAGAGCT
* * * * * ** * *
99857030 ATTGTAAAACCATGTCTAGGACATGGCATCGACCTCAATATGTGAGCC
1 AGTGTAAGACCATGT-TTGGACATGGCATCGGCATTGATATGAGAGCT
* ** * *
99857078 AGCGTAAGACCATGTTTGGAACATGGCATCAACATTTATATGAAAGCT
1 AGTGTAAGACCATGTTTGG-ACATGGCATCGGCATTGATATGAGAGCT
* * * * * * *
99857126 AGTGTAAGACCATGTCTGGGACATGGCGTTGGCCTCGATATGTGACCT
1 AGTGTAAGACCATGT-TTGGACATGGCATCGGCATTGATATGAGAGCT
*
99857174 GGTGTAAGACCATGTTTGGAGCATGGCATCGGCATTGATATGAGAGCT
1 AGTGTAAGACCATGTTTGGA-CATGGCATCGGCATTGATATGAGAGCT
* * * ** * *
99857222 AGCGTAAGACCATGTCTGGGACATCGCATCGGCCCCT-ATATGTGAGCC
1 AGTGTAAGACCATGT-TTGGACATGGCATCGG-CATTGATATGAGAGCT
* * *
99857270 AGTGTAAGACCATGTTTGGAACATGGCATTGGTATTTATATGAGAGCT
1 AGTGTAAGACCATGTTTGG-ACATGGCATCGGCATTGATATGAGAGCT
* * * * *
99857318 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTTAATATGTGAGCT
1 AGTGTAAGACCATGT-TTGGACATGGCATCGGCATTGATATGAGAGCT
* * ** * *
99857366 AATGTAAGACCATATTTGGAACATGGCATCGGCACCGATATATGAGAACC
1 AGTGTAAGACCATGTTTGG-ACATGGCATCGGCATTG--ATATGAGAGCT
* * * *
99857416 AGTGTAAAACTATGTCTGGGACATGGCATTGGCAT
1 AGTGTAAGACCATGT-TTGGACATGGCATCGGCAT
99857451 CTTTCTCTTT
Statistics
Matches: 327, Mismatches: 81, Indels: 24
0.76 0.19 0.06
Matches are distributed among these distances:
47 14 0.04
48 263 0.80
49 15 0.05
50 32 0.10
51 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.26
Consensus pattern (47 bp):
AGTGTAAGACCATGTTTGGACATGGCATCGGCATTGATATGAGAGCT
Found at i:99857142 original size:96 final size:96
Alignment explanation
Indices: 99856978--99857444 Score: 594
Period size: 96 Copynumber: 4.8 Consensus size: 96
99856968 GGGTTACGTA
* *
99856978 AGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGATATGAGAGCTATTGTAAAACCAT
1 AGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGATATGAGAGCTAGTGTAAGACCAT
* *
99857043 GTCTAGGACATGGCATCGACCTCAATATGTG
66 GTCTGGGACATGGCATCGGCCTCAATATGTG
* * * *
99857074 AGCCAGCGTAAGACCATGTTTGGAACATGGCATCAACATTTATATGAAAGCTAGTGTAAGACCAT
1 AGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGATATGAGAGCTAGTGTAAGACCAT
* * *
99857139 GTCTGGGACATGGCGTTGGCCTCGATATGTG
66 GTCTGGGACATGGCATCGGCCTCAATATGTG
* * * *
99857170 A-CCTGGTGTAAGACCATGTTTGGAGCATGGCATCGGCATTGATATGAGAGCTAGCGTAAGACCA
1 AGCC-AGTGTAAGACCATGTTTGGAACATGGCATCGACATTGATATGAGAGCTAGTGTAAGACCA
* * *
99857234 TGTCTGGGACATCGCATCGGCCCCTATATGTG
65 TGTCTGGGACATGGCATCGGCCTCAATATGTG
* ** *
99857266 AGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGTATTTATATGAGAGCTAGTGTAAGACCAT
1 AGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGATATGAGAGCTAGTGTAAGACCAT
* *
99857331 GTCTGGGACATGGCGTCGGCCTTAATATGTG
66 GTCTGGGACATGGCATCGGCCTCAATATGTG
* * * * ** * * * *
99857362 AGCTAATGTAAGACCATATTTGGAACATGGCATCGGCACCGATATATGAGAACCAGTGTAAAACT
1 AGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTG--ATATGAGAGCTAGTGTAAGACC
99857427 ATGTCTGGGACATGGCAT
64 ATGTCTGGGACATGGCAT
99857445 TGGCATCTTT
Statistics
Matches: 319, Mismatches: 48, Indels: 6
0.86 0.13 0.02
Matches are distributed among these distances:
95 2 0.01
96 280 0.88
97 2 0.01
98 35 0.11
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (96 bp):
AGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGATATGAGAGCTAGTGTAAGACCAT
GTCTGGGACATGGCATCGGCCTCAATATGTG
Found at i:99857310 original size:192 final size:192
Alignment explanation
Indices: 99856982--99857444 Score: 656
Period size: 192 Copynumber: 2.4 Consensus size: 192
99856972 TACGTAAGCC
* *
99856982 AGTGTAAGACCATGTTTGGAACATGGCATCGACATTGATATGAGAGCTATTGTAAAACCATGTCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGTAAAACCATGTCT
* *
99857047 AGGACATGGCATCGACCTCAATATGTGAGCCAGCGTAAGACCATGTTTGGAACATGGCATCAACA
66 GGGACATGGCATCGACCCCAATATGTGAGCCAGCGTAAGACCATGTTTGGAACATGGCATCAACA
* *
99857112 TTTATATGAAAGCTAGTGTAAGACCATGTCTGGGACATGGCGTTGGCCTCGATATGTGACCT
131 TTTATATGAAAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCAATATGTGACCT
* * * *
99857174 GGTGTAAGACCATGTTTGGAGCATGGCATCGGCATTGATATGAGAGCTAGCGTAAGACCATGTCT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGTAAAACCATGTCT
* * * * ****
99857239 GGGACATCGCATCGGCCCCTATATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGTA
66 GGGACATGGCATCGACCCCAATATGTGAGCCAGCGTAAGACCATGTTTGGAACATGGCATCAACA
* * *
99857304 TTTATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTTAATATGTGAGCT
131 TTTATATGAAAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCAATATGTGACCT
* * ** * * *
99857366 AATGTAAGACCATATTTGGAACATGGCATCGGCACCGATATATGAGAACCAGTGTAAAACTATGT
1 AGTGTAAGACCATGTTTGGAACATGGCATCGGCATTG--ATATGAGAGCTAGTGTAAAACCATGT
99857431 CTGGGACATGGCAT
64 CTGGGACATGGCAT
99857445 TGGCATCTTT
Statistics
Matches: 236, Mismatches: 33, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
192 202 0.86
194 34 0.14
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (192 bp):
AGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGCTAGTGTAAAACCATGTCT
GGGACATGGCATCGACCCCAATATGTGAGCCAGCGTAAGACCATGTTTGGAACATGGCATCAACA
TTTATATGAAAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCAATATGTGACCT
Found at i:99867695 original size:20 final size:20
Alignment explanation
Indices: 99867670--99867714 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
99867660 AGGGACTAAA
* *
99867670 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
99867690 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
99867710 ATGAA
1 ATGAA
99867715 TACATATGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:99868227 original size:6 final size:6
Alignment explanation
Indices: 99868216--99868241 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
99868206 TCCCCACATT
99868216 AAAATA AAAATA AAAATA AAAATA AA
1 AAAATA AAAATA AAAATA AAAATA AA
99868242 GAGGCCTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:99868556 original size:34 final size:33
Alignment explanation
Indices: 99868506--99868569 Score: 101
Period size: 34 Copynumber: 1.9 Consensus size: 33
99868496 TAGTAGAAGT
*
99868506 AGTCTGGGCCTGAGCCCATTTCAGTAACAGTGGC
1 AGTCTGGGCATGAGCCCATTTCAGT-ACAGTGGC
*
99868540 AGTCTGGGCATTAGCCCATTTCAGTACAGT
1 AGTCTGGGCATGAGCCCATTTCAGTACAGT
99868570 ACGCAAACAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
33 5 0.18
34 23 0.82
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.27
Consensus pattern (33 bp):
AGTCTGGGCATGAGCCCATTTCAGTACAGTGGC
Found at i:99877106 original size:46 final size:45
Alignment explanation
Indices: 99877050--99877225 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
99877040 TATTTGGGCA
99877050 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
99877096 TCTGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
99877143 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
99877189 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
99877226 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:99877205 original size:93 final size:93
Alignment explanation
Indices: 99877046--99877217 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
99877036 AGGATATTTG
* * *
99877046 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
99877111 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
99877139 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
99877204 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
99877218 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:99880812 original size:22 final size:22
Alignment explanation
Indices: 99880784--99880825 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
99880774 GTCCACATTT
99880784 TACATTTATTC-ACACTTTACCA
1 TACATTT-TTCAACACTTTACCA
99880806 TACATTTTTCAACACTTTAC
1 TACATTTTTCAACACTTTAC
99880826 AAATAAGTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.31, C:0.26, G:0.00, T:0.43
Consensus pattern (22 bp):
TACATTTTTCAACACTTTACCA
Found at i:99888560 original size:16 final size:16
Alignment explanation
Indices: 99888539--99888571 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
99888529 CCTATCTCAT
99888539 CACAACTGCATTTAAA
1 CACAACTGCATTTAAA
99888555 CACAACTGCATTTAAA
1 CACAACTGCATTTAAA
99888571 C
1 C
99888572 TCAAACATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.42, C:0.27, G:0.06, T:0.24
Consensus pattern (16 bp):
CACAACTGCATTTAAA
Found at i:99888913 original size:45 final size:45
Alignment explanation
Indices: 99888862--99888951 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
99888852 GATACTCGGA
99888862 AGAATCCATAATTAAGCAATATTAAAATTAAGAAATTGCCAAATT
1 AGAATCCATAATTAAGCAATATTAAAATTAAGAAATTGCCAAATT
99888907 AGAATCCATAATTAAGCAATATTAAAATTAAGAAATTGCCAAATT
1 AGAATCCATAATTAAGCAATATTAAAATTAAGAAATTGCCAAATT
99888952 GTAGAAAAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.51, C:0.11, G:0.09, T:0.29
Consensus pattern (45 bp):
AGAATCCATAATTAAGCAATATTAAAATTAAGAAATTGCCAAATT
Found at i:99888950 original size:16 final size:15
Alignment explanation
Indices: 99888886--99888951 Score: 50
Period size: 16 Copynumber: 4.3 Consensus size: 15
99888876 AGCAATATTA
99888886 AAATTAAGAAATTGCC
1 AAATTAAGAAATT-CC
99888902 AAATT-AG-AA-TCC
1 AAATTAAGAAATTCC
*
99888914 ATAATTAAGCAATATT-A
1 A-AATTAAG-AA-ATTCC
99888931 AAATTAAGAAATTGCC
1 AAATTAAGAAATT-CC
99888947 AAATT
1 AAATT
99888952 GTAGAAAAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 16
0.69 0.03 0.28
Matches are distributed among these distances:
12 3 0.08
13 5 0.12
14 7 0.17
15 4 0.10
16 18 0.45
17 2 0.05
18 1 0.03
ACGTcount: A:0.52, C:0.11, G:0.09, T:0.29
Consensus pattern (15 bp):
AAATTAAGAAATTCC
Found at i:99895643 original size:16 final size:16
Alignment explanation
Indices: 99895622--99895652 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
99895612 ACGATGAATA
99895622 GGGGACCGACCCTTCG
1 GGGGACCGACCCTTCG
99895638 GGGGACCGACCCTTC
1 GGGGACCGACCCTTC
99895653 AAGAATACTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.13, C:0.39, G:0.35, T:0.13
Consensus pattern (16 bp):
GGGGACCGACCCTTCG
Found at i:99914807 original size:45 final size:44
Alignment explanation
Indices: 99914695--99914993 Score: 326
Period size: 44 Copynumber: 6.9 Consensus size: 44
99914685 TACGGTACTA
* *
99914695 ATCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGAAATGAT
1 ATCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
* * *
99914739 ATCGGGCTTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAT-ACT
1 ATCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-T
*
99914783 ATTCGGGCCTTCGAGCCTAACAGGCTATAATGCCGGTGAAATGAT
1 A-TCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
* * *
99914828 ATCGGGCCTTTGAACCTAGCAGGCTATAATGCCGGTGAGAT-ACT
1 ATCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-T
* *
99914872 ATTCGGGCCTTCGCGCCTAGCAGGCTATAATGCCGATGAAATGAT
1 A-TCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
* * * *
99914917 ATCGGG-TTTCGAGCCTAGCAGGC-AAAATGCTGGTG-GATGA-
1 ATCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
* ** *
99914957 ATCTGGG-TTTAAAACCTAGCAGGCTA-AATGCCGGTGA
1 ATC-GGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
99914994 TTTGATAAAA
Statistics
Matches: 220, Mismatches: 26, Indels: 20
0.83 0.10 0.08
Matches are distributed among these distances:
40 3 0.01
41 30 0.14
42 10 0.05
43 17 0.08
44 83 0.38
45 75 0.34
46 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (44 bp):
ATCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
Found at i:99914846 original size:89 final size:88
Alignment explanation
Indices: 99914690--99914939 Score: 403
Period size: 89 Copynumber: 2.8 Consensus size: 88
99914680 TATCGTACGG
* * *
99914690 TACTAATCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGAAATGATATCGGGCTTTTGAGCC
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGC-TTTGAGCC
99914755 TAGCAGGCTATAATGCCGGTGAGA
65 TAGCAGGCTATAATGCCGGTGAGA
* *
99914779 TACTATTCGGGCCTTCGAGCCTAACAGGCTATAATGCCGGTGAAATGATATCGGGCCTTTGAACC
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGG-CTTTGAGCC
99914844 TAGCAGGCTATAATGCCGGTGAGA
65 TAGCAGGCTATAATGCCGGTGAGA
* *
99914868 TACTATTCGGGCCTTCGCGCCTAGCAGGCTATAATGCCGATGAAATGATATCGGG-TTTCGAGCC
1 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTT-GAGCC
99914932 TAGCAGGC
65 TAGCAGGC
99914940 AAAATGCTGG
Statistics
Matches: 150, Mismatches: 9, Indels: 5
0.91 0.05 0.03
Matches are distributed among these distances:
87 3 0.02
88 12 0.08
89 134 0.89
90 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (88 bp):
TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTTGAGCCT
AGCAGGCTATAATGCCGGTGAGA
Found at i:99915145 original size:42 final size:42
Alignment explanation
Indices: 99915099--99915182 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
99915089 TTGTGAGTTT
* *
99915099 GATTTGAATTGAATTATTAGTGTATAATGTTATACATATGTG
1 GATTTGAATTGAATTATAAGTGTATAATGTGATACATATGTG
99915141 GATTTGAATTGAATTATAAGTGTATAATGTGATACATATGTG
1 GATTTGAATTGAATTATAAGTGTATAATGTGATACATATGTG
99915183 AATAAATGTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.35, C:0.02, G:0.20, T:0.43
Consensus pattern (42 bp):
GATTTGAATTGAATTATAAGTGTATAATGTGATACATATGTG
Found at i:99917103 original size:17 final size:17
Alignment explanation
Indices: 99917078--99917130 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
99917068 CTTCTATTTA
*
99917078 TTTAATTATTTTTTATT
1 TTTATTTATTTTTTATT
99917095 TTTATTTA-TTTTTATT
1 TTTATTTATTTTTTATT
* *
99917111 CTTAATATATTATTTTATT
1 -TTTATTTATT-TTTTATT
99917130 T
1 T
99917131 CTTTATTCTT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
16 8 0.27
17 13 0.43
18 2 0.07
19 7 0.23
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTATTTATTTTTTATT
Found at i:99917108 original size:16 final size:16
Alignment explanation
Indices: 99917087--99917146 Score: 50
Period size: 16 Copynumber: 3.7 Consensus size: 16
99917077 ATTTAATTAT
99917087 TTTTTATTTTTATTTA
1 TTTTTATTTTTATTTA
* *
99917103 TTTTTATTCTTAATATA
1 TTTTTATT-TTTATTTA
* *
99917120 TTATTT-TATTTCTTTA
1 TT-TTTATTTTTATTTA
*
99917136 TTCTTATTTTT
1 TTTTTATTTTT
99917147 CTTGTTATTC
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
15 2 0.06
16 19 0.58
17 9 0.27
18 3 0.09
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (16 bp):
TTTTTATTTTTATTTA
Found at i:99926010 original size:40 final size:40
Alignment explanation
Indices: 99925933--99926150 Score: 361
Period size: 40 Copynumber: 5.5 Consensus size: 40
99925923 AAACCAAGTA
* *
99925933 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
99925972 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
99926012 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
99926052 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
99926092 CCTTCGGGACTTAGCCCGGA-ATTAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
99926132 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
99926151 TTATCATCCG
Statistics
Matches: 171, Mismatches: 5, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
39 15 0.09
40 156 0.91
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:99935699 original size:46 final size:45
Alignment explanation
Indices: 99935548--99936089 Score: 318
Period size: 47 Copynumber: 11.6 Consensus size: 45
99935538 GTAAGGTGCT
* * * * *
99935548 GATGCCATGTCCCAGACACGGTCTTACACTGGCTCACATCTTAAGTT
1 GATG-CATGTCCCAGACA-TGTCTTACACTGGCTTACGTCTCAAGTC
* * ** * * *
99935595 GATACTATGTCCCAAACATGGTCTTACACTAACTATA-ATCTCGTAGCC
1 GATGC-ATGTCCCAGACAT-GTCTTACACTGGCT-TACGTCTC-AAGTC
99935643 GATGCATGTCCCAGACATGTGC-TACACTGGCTTACGTCTCAAGTC
1 GATGCATGTCCCAGACATGT-CTTACACTGGCTTACGTCTCAAGTC
* * * * **
99935688 GATGCCATGTCCCAGACATGGCCTTACACTGAC-TATCATTTTGTAG-C
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTA-C-GTCTCAAGTC
* * *
99935735 TGATGCATATCCTAGACATGTCTTATACTGGCTTACGTCTCAAGTC
1 -GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGTC
* * * * *
99935781 AATGCCATGTCCCAGACATGGTTTTACACTGAG--TATCATCTCGTAGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTG-GCTTA-CGTCTC-AAGTC
*
99935829 GATGCATGGCCCAGACATGTCTTACACTGGCTTACGTCTCAAGTC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGTC
* * * * * *
99935874 GATGCCATGTCCTAGACATAGTCTTACACTGAC-TATCATTTCGTAGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTA-CGTCTC-AAGTC
** * * *
99935922 GATGCATGTCTTATACATGTCTTACACTGGCTTACATCTCGAGGTC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTC-AAGTC
** *
99935968 GATGCATGTCCCAGACATGTCTTACACAAGCACT-CGTCTCAA-TGC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-TTACGTCTCAAGT-C
*
99936013 TGATGCCATGTCCCAGACATGGTCTTACACTAGC-T-C-TCAT-AATGTGGCC
1 -GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTC-TCAA-GT---C
*
99936062 GATGCATGTCCCAAACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
99936090 AGCTCACGCA
Statistics
Matches: 388, Mismatches: 71, Indels: 73
0.73 0.13 0.14
Matches are distributed among these distances:
44 1 0.00
45 30 0.08
46 155 0.40
47 156 0.40
48 45 0.12
49 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGTC
Found at i:99935714 original size:93 final size:93
Alignment explanation
Indices: 99935548--99935994 Score: 576
Period size: 93 Copynumber: 4.8 Consensus size: 93
99935538 GTAAGGTGCT
* * * * * * * *
99935548 GATGCCATGTCCCAGACACGGTCTTACACTGGCTCACATCTTAAGTTGATACTATGTCCCAAACA
1 GATG-CATGTCCCAGACA-TGTCTTACACTGGCTTACGTCTCAAGTCGATGCCATGTCCCAGACA
* *
99935613 TGGTCTTACACTAACTATAATCTCGTAGCC
64 TGGTCTTACACTGACTATCATCTCGTAGCC
99935643 GATGCATGTCCCAGACATGTGC-TACACTGGCTTACGTCTCAAGTCGATGCCATGTCCCAGACAT
1 GATGCATGTCCCAGACATGT-CTTACACTGGCTTACGTCTCAAGTCGATGCCATGTCCCAGACAT
* * * *
99935707 GGCCTTACACTGACTATCATTTTGTAGCT
65 GGTCTTACACTGACTATCATCTCGTAGCC
* * * *
99935736 GATGCATATCCTAGACATGTCTTATACTGGCTTACGTCTCAAGTCAATGCCATGTCCCAGACATG
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGTCGATGCCATGTCCCAGACATG
* *
99935801 GTTTTACACTGAGTATCATCTCGTAGCC
66 GTCTTACACTGACTATCATCTCGTAGCC
* * *
99935829 GATGCATGGCCCAGACATGTCTTACACTGGCTTACGTCTCAAGTCGATGCCATGTCCTAGACATA
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGTCGATGCCATGTCCCAGACATG
*
99935894 GTCTTACACTGACTATCATTTCGTAGCC
66 GTCTTACACTGACTATCATCTCGTAGCC
** * * *
99935922 GATGCATGTCTTATACATGTCTTACACTGGCTTACATCTCGAGGTCGATG-CATGTCCCAGACAT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTC-AAGTCGATGCCATGTCCCAGACAT
99935986 -GTCTTACAC
65 GGTCTTACAC
99935995 AAGCACTCGT
Statistics
Matches: 308, Mismatches: 41, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
92 10 0.03
93 272 0.88
94 22 0.07
95 4 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (93 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGTCGATGCCATGTCCCAGACATG
GTCTTACACTGACTATCATCTCGTAGCC
Found at i:99936030 original size:186 final size:186
Alignment explanation
Indices: 99935568--99936043 Score: 595
Period size: 186 Copynumber: 2.6 Consensus size: 186
99935558 CCCAGACACG
* * ** * * * *
99935568 GTCTTACACTGGCTCACATCTTAAGTTGATACTATGTCCCAAACATGGTCTTACACTAA-CTATA
1 GTCTTACACTGGCTTACATCTCAAGTCAATGCCATGTCCCAGACATGGTCTTACACTAAGC-ATC
*
99935632 ATCTCGTAGCCGATGCATGTCCCAGACATGTGC-TACACTGGCTTACGTCTCAAGTCGATGCCAT
65 ATCTCATAGCCGATGCATGTCCCAGACATGT-CTTACACTGGCTTACGTCTCAAGTCGATGCCAT
* * *
99935696 GTCCCAGACATGGCCTTACACTGACTATCATTTTGTAGCTGATGCATATCCTAGACAT
129 GTCCCAGACATAGCCTTACACTGACTATCATTTCGTAGCCGATGCATATCCTAGACAT
* * * * *
99935754 GTCTTATACTGGCTTACGTCTCAAGTCAATGCCATGTCCCAGACATGGTTTTACACTGAGTATCA
1 GTCTTACACTGGCTTACATCTCAAGTCAATGCCATGTCCCAGACATGGTCTTACACTAAGCATCA
* *
99935819 TCTCGTAGCCGATGCATGGCCCAGACATGTCTTACACTGGCTTACGTCTCAAGTCGATGCCATGT
66 TCTCATAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGTCGATGCCATGT
* * * * *
99935884 CCTAGACATAGTCTTACACTGACTATCATTTCGTAGCCGATGCATGTCTTATACAT
131 CCCAGACATAGCCTTACACTGACTATCATTTCGTAGCCGATGCATATCCTAGACAT
* *
99935940 GTCTTACACTGGCTTACATCTCGAGGTCGATG-CATGTCCCAGACAT-GTCTTACAC-AAGCACT
1 GTCTTACACTGGCTTACATCTC-AAGTCAATGCCATGTCCCAGACATGGTCTTACACTAAGCA-T
* *
99936002 CGTCTCA-ATGCTGATGCCATGTCCCAGACATGGTCTTACACT
64 CATCTCATA-GCCGATG-CATGTCCCAGACAT-GTCTTACACT
99936044 AGCTCTCATA
Statistics
Matches: 250, Mismatches: 33, Indels: 13
0.84 0.11 0.04
Matches are distributed among these distances:
184 4 0.02
185 21 0.08
186 208 0.83
187 17 0.07
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.30
Consensus pattern (186 bp):
GTCTTACACTGGCTTACATCTCAAGTCAATGCCATGTCCCAGACATGGTCTTACACTAAGCATCA
TCTCATAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCAAGTCGATGCCATGT
CCCAGACATAGCCTTACACTGACTATCATTTCGTAGCCGATGCATATCCTAGACAT
Found at i:99936069 original size:140 final size:139
Alignment explanation
Indices: 99935601--99936089 Score: 360
Period size: 140 Copynumber: 3.5 Consensus size: 139
99935591 AGTTGATACT
* * * * * *
99935601 ATGTCCCAAACATGGTCTTACACTAACTATAATCTCGTAGCCGATGCATGTCCCAGACATGTGC-
1 ATGTCCCAGACATAGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCCAAACATGT-CT
* * * * * * *
99935665 TACACTGGCTTACGTCTC-AAGTCGATGCCATGTCCCAGACATGGCCTTACAC-TGACTATCATT
65 TACACTGGCTTACATCTCGAGGTCGATG-CATGGCCCAGACAT-GTCTTACACAAGCCTA-C-GT
* **
99935728 TTGTAG-CTGATG-C
126 CTCAAGTC-GATGCC
* * * * * * * * * *
99935741 ATATCCTAGACAT-GTCTTATACTGGCT-TACGTCTC-AAGTCAATGCCATGTCCCAGACATGGT
1 ATGTCCCAGACATAGTCTTACACTGACTAT-CATATCGTAGCCGATG-CATGTCCCAAACAT-GT
* * ** *
99935803 TTTACACTGAG--TATCATCTCGTA-GCCGATGCATGGCCCAGACATGTCTTACACTGGCTTACG
63 CTTACACTG-GCTTA-CATCTCG-AGGTCGATGCATGGCCCAGACATGTCTTACACAAGCCTACG
99935865 TCTCAAGTCGATGCC
125 TCTCAAGTCGATGCC
* * ** *
99935880 ATGTCCTAGACATAGTCTTACACTGACTATCATTTCGTAGCCGATGCATGTCTTATACATGTCTT
1 ATGTCCCAGACATAGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCCAAACATGTCTT
*
99935945 ACACTGGCTTACATCTCGAGGTCGATGCATGTCCCAGACATGTCTTACACAAGCACT-CGTCTCA
66 ACACTGGCTTACATCTCGAGGTCGATGCATGGCCCAGACATGTCTTACACAAGC-CTACGTCTCA
99936009 A-TGCTGATGCC
130 AGT-C-GATGCC
* * *
99936020 ATGTCCCAGACATGGTCTTACACT-AGCTCTCATAAT-GTGGCCGATGCATGTCCCAAACATGTC
1 ATGTCCCAGACATAGTCTTACACTGA-CTATCAT-ATCGTAGCCGATGCATGTCCCAAACATGTC
99936083 TTACACT
64 TTACACT
99936090 AGCTCACGCA
Statistics
Matches: 279, Mismatches: 48, Indels: 44
0.75 0.13 0.12
Matches are distributed among these distances:
138 18 0.06
139 111 0.40
140 134 0.48
141 15 0.05
142 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (139 bp):
ATGTCCCAGACATAGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCCAAACATGTCTT
ACACTGGCTTACATCTCGAGGTCGATGCATGGCCCAGACATGTCTTACACAAGCCTACGTCTCAA
GTCGATGCC
Found at i:99936093 original size:46 final size:46
Alignment explanation
Indices: 99935786--99936094 Score: 162
Period size: 46 Copynumber: 6.6 Consensus size: 46
99935776 AAGTCAATGC
* * * *
99935786 CATGTCCCAGACATGGTTTTACACTGAG-TATCAT-CTCGTAGCCGATG
1 CATGTCCCAGACAT-GTCTTACACT-AGCTCTCATAAT-GTGGCCGATG
* *
99935833 CATGGCCCAGACATGTCTTACACTGGCTTACGTC-TCAA-GT---CGATG
1 CATGTCCCAGACATGTCTTACACTAGC-T-C-TCAT-AATGTGGCCGATG
* * * *
99935878 CCATGTCCTAGACATAGTCTTACACT-GACTATCAT-TTCGTAGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTAG-CTCTCATAAT-GTGGCCGATG
** * * * * *
99935926 CATGTCTTATACATGTCTTACACTGGCT-TACAT-CTCGAGGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCT-CATAAT-GTGGCCGATG
* *
99935972 CATGTCCCAGACATGTCTTACACAAGCACTCGTC-TCAA--T-GCTGATG
1 CATGTCCCAGACATGTCTTACACTAG--CTC-TCAT-AATGTGGCCGATG
99936018 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATGTGGCCGATG
*
99936066 CATGTCCCAAACATGTCTTACACTAGCTC
1 CATGTCCCAGACATGTCTTACACTAGCTC
99936095 ACGCAAGTAA
Statistics
Matches: 206, Mismatches: 27, Indels: 59
0.71 0.09 0.20
Matches are distributed among these distances:
44 2 0.01
45 14 0.07
46 92 0.45
47 66 0.32
48 28 0.14
49 3 0.01
50 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATAATGTGGCCGATG
Found at i:99943178 original size:47 final size:47
Alignment explanation
Indices: 99943112--99943235 Score: 142
Period size: 47 Copynumber: 2.6 Consensus size: 47
99943102 TTACATAATG
* * * * *
99943112 ATGCCATAGCCCAGCTATGGTCTTACAC-GTAATCACATATCTCACTA
1 ATGCCATATCCCAGATATGGTCTTACACAGT-AGCACATATCACACCA
* * * *
99943159 ATGTCATATCCCAGATATGGTCTTATACAGTAGCATATATCACACCG
1 ATGCCATATCCCAGATATGGTCTTACACAGTAGCACATATCACACCA
*
99943206 ATGCCATATCCCAGATATGGTCTTATACAG
1 ATGCCATATCCCAGATATGGTCTTACACAG
99943236 AAATCACTTG
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
47 64 0.97
48 2 0.03
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.29
Consensus pattern (47 bp):
ATGCCATATCCCAGATATGGTCTTACACAGTAGCACATATCACACCA
Found at i:99943251 original size:7 final size:7
Alignment explanation
Indices: 99943239--99943267 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
99943229 TATACAGAAA
99943239 TCACTTG
1 TCACTTG
99943246 TCACTTG
1 TCACTTG
99943253 TCACTTG
1 TCACTTG
99943260 TCACTTG
1 TCACTTG
99943267 T
1 T
99943268 AGCCAAAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.28, G:0.14, T:0.45
Consensus pattern (7 bp):
TCACTTG
Found at i:99943301 original size:31 final size:31
Alignment explanation
Indices: 99943266--99943474 Score: 310
Period size: 31 Copynumber: 6.7 Consensus size: 31
99943256 CTTGTCACTT
* *
99943266 GTAGCCAAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* ** *
99943297 GTAGCTGGTGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
99943328 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
99943359 GTAGCCGAAGCTACCACTTTTCACTGATTAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
99943390 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
99943421 GTAGCTGAAACTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
99943452 GTAGCTGAAGCTACCACTTTTCA
1 GTAGCCGAAGCTACCACTTTTCA
99943475 GTTGTCATTT
Statistics
Matches: 162, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 162 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:99943548 original size:50 final size:51
Alignment explanation
Indices: 99943452--99943580 Score: 199
Period size: 50 Copynumber: 2.5 Consensus size: 51
99943442 CACTGATCAG
* * * *
99943452 GTAGCTGAAGCTACCACTTTTCAGTTGTCATTTGCCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGCCATTGATCAGATAAGT
99943503 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCC-TTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTG-CCATTGATCAGATAAGT
99943553 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
99943581 TTCTATGGTC
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
50 47 0.65
51 25 0.35
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.35
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTGCCATTGATCAGATAAGT
Found at i:99944638 original size:17 final size:18
Alignment explanation
Indices: 99944604--99944640 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
99944594 CAATTAACCC
*
99944604 CTCAATTAAGATAATTTT
1 CTCAATTAACATAATTTT
99944622 CTCAATTAACA-AATTTT
1 CTCAATTAACATAATTTT
99944639 CT
1 CT
99944641 AGACATTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.38, C:0.16, G:0.03, T:0.43
Consensus pattern (18 bp):
CTCAATTAACATAATTTT
Found at i:99946915 original size:46 final size:46
Alignment explanation
Indices: 99946765--99947030 Score: 220
Period size: 46 Copynumber: 5.7 Consensus size: 46
99946755 GGTAAGATAC
* * * *
99946765 CGATGCCATGTCCCAGACACGGTCTTACACTAGCTCACATCT-TAAGT
1 CGAT-CCATGTCCCAGACA-TGTCTTACACTAGCTTATATCTCGAAGT
* * * *
99946812 TGATGCCATGTCCCAAACATGCTCTTACACT-GAC-TATCATCTCGTAGC
1 CGAT-CCATGTCCCAGACATG-TCTTACACTAG-CTTAT-ATCTCGAAGT
* * *
99946860 CGATGCATGTCCCAGACATGTCTTACACTAGCTTATGTCTC-AATT
1 CGATCCATGTCCCAGACATGTCTTACACTAGCTTATATCTCGAAGT
* *
99946905 CGATTCCATGTCCCAGACATGGTCTTACACT-GAC-TATCATCTCGTAGC
1 CGA-TCCATGTCCCAGACAT-GTCTTACACTAG-CTTAT-ATCTCGAAGT
* * ** *
99946953 CGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGT
1 CGATCCATGTCCCAGACATGTCTTACACTAGCTTATATCTCGAAGT
* *
99946999 CGATGCATGTCCCAGACATGTCTTATACTAGC
1 CGATCCATGTCCCAGACATGTCTTACACTAGC
99947031 ACTCGTCTTA
Statistics
Matches: 178, Mismatches: 28, Indels: 27
0.76 0.12 0.12
Matches are distributed among these distances:
45 4 0.02
46 83 0.47
47 82 0.46
48 9 0.05
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.29
Consensus pattern (46 bp):
CGATCCATGTCCCAGACATGTCTTACACTAGCTTATATCTCGAAGT
Found at i:99946931 original size:93 final size:93
Alignment explanation
Indices: 99946764--99947023 Score: 355
Period size: 93 Copynumber: 2.8 Consensus size: 93
99946754 GGGTAAGATA
* * * * * *
99946764 CCGATGCCATGTCCCAGACACGGTCTTACACTAGCTCACATCTTAAGTT-GATGCCATGTCCCAA
1 CCGATG-CATGTCCCAGACA-TGTCTTACACTAGCTTACGTCTCAA-TTCGATTCCATGTCCCAG
*
99946828 ACATGCTCTTACACTGACTATCATCTCGTAG
63 ACATGGTCTTACACTGACTATCATCTCGTAG
*
99946859 CCGATGCATGTCCCAGACATGTCTTACACTAGCTTATGTCTCAATTCGATTCCATGTCCCAGACA
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTCAATTCGATTCCATGTCCCAGACA
99946924 TGGTCTTACACTGACTATCATCTCGTAG
66 TGGTCTTACACTGACTATCATCTCGTAG
* ** *
99946952 CCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGTCGA-TGCATGTCCCAGAC
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTC-AATTCGATTCCATGTCCCAGAC
99947016 AT-GTCTTA
65 ATGGTCTTA
99947024 TACTAGCACT
Statistics
Matches: 150, Mismatches: 13, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
92 8 0.05
93 118 0.79
94 18 0.12
95 6 0.04
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (93 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTCAATTCGATTCCATGTCCCAGACA
TGGTCTTACACTGACTATCATCTCGTAG
Found at i:99947038 original size:46 final size:46
Alignment explanation
Indices: 99946764--99947123 Score: 206
Period size: 47 Copynumber: 7.7 Consensus size: 46
99946754 GGGTAAGATA
* * * * * *
99946764 CCGATGCCATGTCCCAGACACGGTCTTACACTAGCTCACATCT-TAAG
1 CCGATG-CATGTCCCAGACA-TGTCTTACACTAGCACTCGTCTCGAGG
** * *
99946811 TTGATGCCATGTCCCAAACATGCTCTTACACT-G-ACTATCATCTCGTA-G
1 CCGATG-CATGTCCCAGACATG-TCTTACACTAGCAC--TCGTCTCG-AGG
**
99946859 CCGATGCATGTCCCAGACATGTCTTACACTAGCTTA-T-GTCTC-AAT
1 CCGATGCATGTCCCAGACATGTCTTACACTAGC--ACTCGTCTCGAGG
* * *
99946904 TCGATTCCATGTCCCAGACATGGTCTTACACT-G-ACTATCATCTCGTA-G
1 CCGA-TGCATGTCCCAGACAT-GTCTTACACTAGCAC--TCGTCTCG-AGG
* *
99946952 CCGATGCATGTCCCAGACATGTCTTACACTGGC-TTACGTCTCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCACT-CGTCTCGAGG
* * ** *
99946998 TCGATGCATGTCCCAGACATGTCTTATACTAGCACTCGTCTTAATG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCGAGG
* * * * * * *
99947044 CCGATGCCATGTCCCGGACATGGGCTTACACTGGCTCTCATAAT-GTGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCGT-CTCGAGG
99947092 CCGATGCATGTCCCAGA-ATGTCTTACACTAGC
1 CCGATGCATGTCCCAGACATGTCTTACACTAGC
99947124 TCACGCAAGT
Statistics
Matches: 246, Mismatches: 41, Indels: 54
0.72 0.12 0.16
Matches are distributed among these distances:
43 1 0.00
44 1 0.00
45 17 0.07
46 93 0.38
47 101 0.41
48 29 0.12
49 3 0.01
50 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCGAGG
Found at i:99947054 original size:140 final size:137
Alignment explanation
Indices: 99946764--99947120 Score: 395
Period size: 140 Copynumber: 2.6 Consensus size: 137
99946754 GGGTAAGATA
* **
99946764 CCGATGCCATGTCCCAGACACGGTCTTACACT-AGCTCA-CATCT-TAAGTTGATGCCATGTCCC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGA-CT-ATCATCTGT-AGCCGATG-CATGTCCC
*
99946826 AAACATGCTCTTACACTGACTATCATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTAG
62 AGACATG-TCTTACACTGACTATCATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTAG
99946891 CTTATGTCTCAAT
126 C-TATGTCTCAAT
* *
99946904 TCGATTCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTAGCCGATGCATGTCCCAGA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCT-GTAGCCGATGCATGTCCCAGA
* * * *
99946969 CATGTCTTACACTGGCT-TACGTCTCG-AGGTCGATGCATGTCCCAGACATGTCTTATACTAGC-
65 CATGTCTTACACTGACTAT-CATCTCGTA-GCCGATGCATGTCCCAGACATGTCTTACACTAGCT
*
99947031 ACTCGTCTTAAT
128 A-T-GTCTCAAT
* * * * * *
99947043 GCCGATGCCATGTCCCGGACATGGGCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAG
1 -CCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAT-CTGTAGCCGATGCATGTCCCAG
99947108 A-ATGTCTTACACT
64 ACATGTCTTACACT
99947121 AGCTCACGCA
Statistics
Matches: 188, Mismatches: 19, Indels: 21
0.82 0.08 0.09
Matches are distributed among these distances:
137 1 0.01
138 3 0.02
139 70 0.37
140 105 0.56
141 8 0.04
142 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.29
Consensus pattern (137 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTGTAGCCGATGCATGTCCCAGAC
ATGTCTTACACTGACTATCATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTAGCTATG
TCTCAAT
Found at i:99947064 original size:93 final size:92
Alignment explanation
Indices: 99946764--99947124 Score: 328
Period size: 93 Copynumber: 3.9 Consensus size: 92
99946754 GGGTAAGATA
* * * * * * * *
99946764 CCGATGCCATGTCCCAGACACGGTCTTACACTAGCTCACATCT-TAAGTTGATGCCATGTCCCAA
1 CCGATG-CATGTCCCAGACA-TGTCTTACACTGGCTTACGTCTCGAGGTCGATG-CATGTCCCAG
99946828 ACATGCTCTTACACT-GACTATCATCTCGTAG
63 ACATG-TCTTACACTAG-CTATCATCTCGTAG
* * ** *
99946859 CCGATGCATGTCCCAGACATGTCTTACACTAGCTTATGTCTC-AATTCGATTCCATGTCCCAGAC
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGTCGA-TGCATGTCCCAGAC
99946923 ATGGTCTTACACT-GACTATCATCTCGTAG
65 AT-GTCTTACACTAG-CTATCATCTCGTAG
99946952 CCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGTCGATGCATGTCCCAGACA
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGTCGATGCATGTCCCAGACA
* *
99947017 TGTCTTATACTAGC-A-C-TCGTCTTAATG
66 TGTCTTACACTAGCTATCATC-TCGT-A-G
* * * * * *
99947044 CCGATGCCATGTCCCGGACATGGGCTTACACTGGCTCT-CATAAT-GTGGCCGATGCATGTCCCA
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACGT-CTCGAGGTCGATGCATGTCCCA
99947107 GA-ATGTCTTACACTAGCT
62 GACATGTCTTACACTAGCT
99947125 CACGCAAGTA
Statistics
Matches: 231, Mismatches: 22, Indels: 27
0.82 0.08 0.10
Matches are distributed among these distances:
89 2 0.01
90 4 0.02
91 2 0.01
92 17 0.07
93 144 0.62
94 54 0.23
95 8 0.03
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.29
Consensus pattern (92 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGTCGATGCATGTCCCAGACA
TGTCTTACACTAGCTATCATCTCGTAG
Found at i:99953594 original size:41 final size:41
Alignment explanation
Indices: 99953547--99953625 Score: 131
Period size: 41 Copynumber: 1.9 Consensus size: 41
99953537 CATACGCCTG
99953547 TGTGCCTGGACCATGTCTTTCACACAGCCATGACACGCTCA
1 TGTGCCTGGACCATGTCTTTCACACAGCCATGACACGCTCA
* * *
99953588 TGTGCCTGGCCCGTGTCTTTCACACGGCCATGACACGC
1 TGTGCCTGGACCATGTCTTTCACACAGCCATGACACGC
99953626 CCGTGTCCTA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.18, C:0.35, G:0.23, T:0.24
Consensus pattern (41 bp):
TGTGCCTGGACCATGTCTTTCACACAGCCATGACACGCTCA
Found at i:99954444 original size:26 final size:26
Alignment explanation
Indices: 99954408--99954460 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
99954398 TGGCATAAGT
99954408 AAAACTTACTCATCAATATTCATTAC
1 AAAACTTACTCATCAATATTCATTAC
99954434 AAAACTTACTCATCAATATTCATTAC
1 AAAACTTACTCATCAATATTCATTAC
99954460 A
1 A
99954461 CCTCATATAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.43, C:0.23, G:0.00, T:0.34
Consensus pattern (26 bp):
AAAACTTACTCATCAATATTCATTAC
Found at i:99954767 original size:46 final size:45
Alignment explanation
Indices: 99954671--99954891 Score: 186
Period size: 46 Copynumber: 4.8 Consensus size: 45
99954661 GTATATCTGT
* *
99954671 GCCGATGCCATGTCCCAGACATGATCTTACACTTA-C-ACATCTCGTA-
1 GCCGATG-CATGTCCCAGACATG-TCTTACAC-TAGCTACGTCTC-AAG
99954717 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTCAAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC-TACGTCTCAAG
* *
99954763 GCCGATGCATGTCCTAGACATGTCTTACACTAGC-ACTTGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTAC--GTCTCAAG
* * ** * *
99954809 GCCGATGCCATGTCCCAGGCATGGTCTT-CACT-GGT-TTTCATGATG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTACGTC-TCAAG
*
99954854 TGACTGATGCATGTCCCAGACATGTCTTACACTAGCTA
1 -G-CCGATGCATGTCCCAGACATGTCTTACACTAGCTA
99954892 ACACAAGTGA
Statistics
Matches: 145, Mismatches: 15, Indels: 28
0.77 0.08 0.15
Matches are distributed among these distances:
43 2 0.01
44 13 0.09
45 23 0.16
46 79 0.54
47 23 0.16
48 5 0.03
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTACGTCTCAAG
Found at i:99958360 original size:55 final size:54
Alignment explanation
Indices: 99958252--99958504 Score: 193
Period size: 55 Copynumber: 4.8 Consensus size: 54
99958242 ATTAGGGTTT
* * * *
99958252 AAGGATACCATGTAAAACCATGCCAAGGCATGGAAATTGGTAAGCTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACAT-GACATTGGT-AGGTTTCATAAGGC
* * *
99958307 AAGGATACGATGTAAGACCATGTCAAGACATGACATTGATAGGTTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGACATTGGTAGGTTTC-ATAAGGC
* * *
99958362 AAAGG-TCCCATGTAAGACTATGCCAATG-CATGGCATTGGT-GAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAA-GACATGACATTGGTAG-GTTTCATAAGGC
* * ** * *
99958415 AAGGATACCATGTAAGACCATGTCGAGACATGGTAATGGTAAGTTTC--AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGACATTGGTAGGTTTCATAAGGC
* * * * *
99958464 AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTA
1 AAGGATACCATGTAAGACCATGCCAAGACATGACATTGGTA
99958505 AGGTACCCGT
Statistics
Matches: 164, Mismatches: 25, Indels: 24
0.77 0.12 0.11
Matches are distributed among these distances:
49 36 0.22
52 7 0.04
53 41 0.25
54 14 0.09
55 61 0.37
56 5 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGACATTGGTAGGTTTCATAAGGC
Found at i:99958461 original size:108 final size:109
Alignment explanation
Indices: 99958259--99958461 Score: 266
Period size: 108 Copynumber: 1.9 Consensus size: 109
99958249 TTTAAGGATA
*
99958259 CCATGTAAAACCATGCCAAGGCATGGAAATTGGTAAGCTTTCTAAGGCAAGGATACGATGTAAGA
1 CCATGTAAAACCATGCCAAGGCATGGAAATTGGTAAGC-TTCTAAGGCAAGGATACCATGTAAGA
* *
99958324 CCATGTCAAGACATGACATTGATAGGTTTCTATAAGGCAAAGGTC
65 CCATGTCAAGACATGACAATGATAAGTTTCTATAAGGCAAAGGTC
* * * * *
99958369 CCATGTAAGACTATGCCAATGCATGG-CATTGGTGAG-TTCATAAGGCAAGGATACCATGTAAGA
1 CCATGTAAAACCATGCCAAGGCATGGAAATTGGTAAGCTTC-TAAGGCAAGGATACCATGTAAGA
* ** *
99958432 CCATGTCGAGACATGGTAATGGTAAGTTTC
65 CCATGTCAAGACATGACAATGATAAGTTTC
99958462 AAAAGGATAC
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.57
109 8 0.10
110 23 0.29
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (109 bp):
CCATGTAAAACCATGCCAAGGCATGGAAATTGGTAAGCTTCTAAGGCAAGGATACCATGTAAGAC
CATGTCAAGACATGACAATGATAAGTTTCTATAAGGCAAAGGTC
Found at i:99963097 original size:26 final size:27
Alignment explanation
Indices: 99963060--99963113 Score: 76
Period size: 26 Copynumber: 2.0 Consensus size: 27
99963050 AGAATTGCTG
99963060 AATATTTACTGA-TCACAAAAG-TTTGA
1 AATATTTACTGACTCA-AAAAGATTTGA
*
99963086 AATATTTTCTGACTCAAAAAGATTTGA
1 AATATTTACTGACTCAAAAAGATTTGA
99963113 A
1 A
99963114 TTTGAGGCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
26 16 0.64
27 9 0.36
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.35
Consensus pattern (27 bp):
AATATTTACTGACTCAAAAAGATTTGA
Found at i:99965932 original size:55 final size:54
Alignment explanation
Indices: 99965824--99966067 Score: 218
Period size: 55 Copynumber: 4.6 Consensus size: 54
99965814 ATTAGGGTTT
* * * *
99965824 AAGGATACCATGTAAAACCATGCCAAGGCATGGAAATTGGTAAGCTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACAT-GACATTGGT-AGGTTTCATAAGGC
* * *
99965879 AAGGATACGATGTAAGACCATGTCAAGACATGACATTGATAGGTTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGACATTGGTAGGTTTC-ATAAGGC
* * *
99965934 AAAGG-TCCCATGTAAGACCATACCAAGGCATGACATTGGT-GAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGACATTGGTAG-GTTTCATAAGGC
* * * * *
99965987 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTTTC--AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGACATTGGTAGGTTTCATAAGGC
* * *
99966036 AAGGATACCACGTAAGACCATGACAAGTCATG
1 AAGGATACCATGTAAGACCATGCCAAGACATG
99966068 GCAATGATAA
Statistics
Matches: 157, Mismatches: 25, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
49 28 0.18
52 6 0.04
53 42 0.27
54 14 0.09
55 63 0.40
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGACATTGGTAGGTTTCATAAGGC
Found at i:99966033 original size:108 final size:109
Alignment explanation
Indices: 99965831--99966033 Score: 284
Period size: 108 Copynumber: 1.9 Consensus size: 109
99965821 TTTAAGGATA
* *
99965831 CCATGTAAAACCATGCCAAGGCATGGAAATTGGTAAGCTTTCTAAGGCAAGGATACGATGTAAGA
1 CCATGTAAAACCATACCAAGGCATGGAAATTGGTAAGC-TTCTAAGGCAAGGATACCATGTAAGA
* *
99965896 CCATGTCAAGACATGACATTGATAGGTTTCTATAAGGCAAAGGTC
65 CCATGTCAAGACATGACAATGATAAGTTTCTATAAGGCAAAGGTC
* * *
99965941 CCATGTAAGACCATACCAAGGCAT-GACATTGGTGAG-TTCATAAGGCAAGGATACCATGTAAGA
1 CCATGTAAAACCATACCAAGGCATGGAAATTGGTAAGCTTC-TAAGGCAAGGATACCATGTAAGA
* * *
99966004 CCATGTCGAGACATGGCAATGGTAAGTTTC
65 CCATGTCAAGACATGACAATGATAAGTTTC
99966034 AAAAGGATAC
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.57
109 10 0.12
110 22 0.27
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.23
Consensus pattern (109 bp):
CCATGTAAAACCATACCAAGGCATGGAAATTGGTAAGCTTCTAAGGCAAGGATACCATGTAAGAC
CATGTCAAGACATGACAATGATAAGTTTCTATAAGGCAAAGGTC
Found at i:99971381 original size:37 final size:37
Alignment explanation
Indices: 99971319--99971425 Score: 178
Period size: 37 Copynumber: 2.9 Consensus size: 37
99971309 AGCTCAGATG
* * *
99971319 AAATCTCCACACGAAGTTATTGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
99971356 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
99971393 TAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCG
99971426 AAATATATAT
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:99971649 original size:52 final size:52
Alignment explanation
Indices: 99971576--99971771 Score: 307
Period size: 52 Copynumber: 3.9 Consensus size: 52
99971566 ACACATCGCC
99971576 TATATATTTCACATT-GACCATTCGGCTTTACCACATATACATATCTCATATA
1 TATATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCATATA
*
99971628 TATATATTTCGCATTAGCCATTCGGCTTTACCAC--ATACATATCTC----A
1 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATA
* *
99971674 TACATATTTCACATTAGCCATTCGACTTTACCACATATACATATCTCATATA
1 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATA
99971726 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
1 TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
99971772 TATACATCAA
Statistics
Matches: 131, Mismatches: 6, Indels: 14
0.87 0.04 0.09
Matches are distributed among these distances:
46 32 0.24
48 11 0.08
50 11 0.08
52 76 0.58
53 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.38
Consensus pattern (52 bp):
TATATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATA
Found at i:99971695 original size:98 final size:99
Alignment explanation
Indices: 99971579--99971778 Score: 341
Period size: 98 Copynumber: 2.0 Consensus size: 99
99971569 CATCGCCTAT
* *
99971579 ATATTTCACATTGACCATTCGGCTTTACCACATATACATATCTCATATATATATATTTCGCATTA
1 ATATTTCACATTGACCATTCGACTTTACCACATATACATATCTCATATATATATATTTCACATTA
99971644 GCCATTCGGCTTTACCAC-ATACATATCTCATAC
66 GCCATTCGGCTTTACCACAATACATATCTCATAC
99971677 ATATTTCACATT-AGCCATTCGACTTTACCACATATACATATCTCATATATATATATTTCACATT
1 ATATTTCACATTGA-CCATTCGACTTTACCACATATACATATCTCATATATATATATTTCACATT
*
99971741 AGCCATTCGGCTTTACCACATATACATATCTTATAC
65 AGCCATTCGGCTTTACCACA-ATACATATCTCATAC
99971777 AT
1 AT
99971779 CAATTTCAGC
Statistics
Matches: 96, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
97 1 0.01
98 79 0.82
100 16 0.17
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.38
Consensus pattern (99 bp):
ATATTTCACATTGACCATTCGACTTTACCACATATACATATCTCATATATATATATTTCACATTA
GCCATTCGGCTTTACCACAATACATATCTCATAC
Found at i:99976151 original size:47 final size:46
Alignment explanation
Indices: 99976085--99976258 Score: 183
Period size: 47 Copynumber: 3.7 Consensus size: 46
99976075 TATCTATACT
* *
99976085 GATGCCATGTCCCAGACATGGTCTTACACTAGCTTACGTCTCGAGGCC
1 GATGCCATGTCCCAGACAT-GTCTTACACTAGCTT-CATCTCGAGGTC
* * * * *
99976133 GATG-CATGTCCTAGACATGTCCTACACTAGCACTCATCTCAATGTC
1 GATGCCATGTCCCAGACATGTCTTACACTAGC-TTCATCTCGAGGTC
* * *
99976179 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGTC
1 GATGCCATGTCCCAGACAT-GTCTTACACTAGCT-TCAT-CTCGAGGTC
99976227 GATG-CATGTCCCAGACATGTCTTACACTAGCT
1 GATGCCATGTCCCAGACATGTCTTACACTAGCT
99976259 CACACAAGTG
Statistics
Matches: 105, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
46 37 0.35
47 41 0.39
48 26 0.25
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
GATGCCATGTCCCAGACATGTCTTACACTAGCTTCATCTCGAGGTC
Found at i:99976206 original size:94 final size:94
Alignment explanation
Indices: 99976085--99976257 Score: 251
Period size: 94 Copynumber: 1.8 Consensus size: 94
99976075 TATCTATACT
* * *
99976085 GATGCCATGTCCCAGACATGGTCTTACACTAGCT-TACGT-CTCGAGGCCGATGCATGTCCTAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATAAT-GAGGCCGATGCATGTCCCAGA
99976148 CATGTCCTACACTAGCACTCATCTCAATGTC
64 CATGTCCTACACTAGCACTCATCTCAATGTC
* * *
99976179 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGTCGATGCATGTCCCAGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGAGGCCGATGCATGTCCCAGACA
*
99976244 TGTCTTACACTAGC
66 TGTCCTACACTAGC
99976258 TCACACAAGT
Statistics
Matches: 70, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
94 68 0.97
95 2 0.03
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (94 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGAGGCCGATGCATGTCCCAGACA
TGTCCTACACTAGCACTCATCTCAATGTC
Found at i:99980411 original size:22 final size:22
Alignment explanation
Indices: 99980385--99980469 Score: 73
Period size: 22 Copynumber: 3.7 Consensus size: 22
99980375 TAATGAACAT
99980385 AGAGCACTAAAGTGCTATACAG
1 AGAGCACTAAAGTGCTATACAG
* **
99980407 AGAGCAC-AAATGTGCTAAATGG
1 AGAGCACTAAA-GTGCTATACAG
*
99980429 AGAGCACTAATGTGCTAATAATCAG
1 AGAGCACTAAAGTGCT-AT-A-CAG
* *
99980454 AGGGCACTAACGTGCT
1 AGAGCACTAAAGTGCT
99980470 TATAATCAAA
Statistics
Matches: 49, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
21 3 0.06
22 27 0.55
23 3 0.06
24 1 0.02
25 15 0.31
ACGTcount: A:0.38, C:0.18, G:0.25, T:0.20
Consensus pattern (22 bp):
AGAGCACTAAAGTGCTATACAG
Found at i:99981936 original size:9 final size:9
Alignment explanation
Indices: 99981922--99981951 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
99981912 ATATGTATTT
99981922 CACTATTAC
1 CACTATTAC
*
99981931 CACTATTAT
1 CACTATTAC
99981940 CACTATTAC
1 CACTATTAC
99981949 CAC
1 CAC
99981952 ACAATTGGCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (9 bp):
CACTATTAC
Found at i:99981944 original size:18 final size:17
Alignment explanation
Indices: 99981917--99981951 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
99981907 ATTCCATATG
99981917 TATTTCACTATTACCAC
1 TATTTCACTATTACCAC
99981934 TATTATCACTATTACCAC
1 TATT-TCACTATTACCAC
99981952 ACAATTGGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.31, C:0.29, G:0.00, T:0.40
Consensus pattern (17 bp):
TATTTCACTATTACCAC
Found at i:99984066 original size:17 final size:17
Alignment explanation
Indices: 99984046--99984099 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
99984036 AAATGTTGAT
99984046 TTAAGTGAATTGAAATG
1 TTAAGTGAATTGAAATG
* * **
99984063 TTAATTGAAATGTTGAT-
1 TTAAGTGAATTG-AAATG
99984080 TTAAGTGAATTGAAATG
1 TTAAGTGAATTGAAATG
99984097 TTA
1 TTA
99984100 TTTGTTTGAA
Statistics
Matches: 27, Mismatches: 8, Indels: 4
0.69 0.21 0.10
Matches are distributed among these distances:
16 2 0.07
17 23 0.85
18 2 0.07
ACGTcount: A:0.39, C:0.00, G:0.20, T:0.41
Consensus pattern (17 bp):
TTAAGTGAATTGAAATG
Found at i:99984070 original size:12 final size:12
Alignment explanation
Indices: 99984032--99984099 Score: 54
Period size: 12 Copynumber: 6.0 Consensus size: 12
99984022 TGAGAATGAC
*
99984032 ATTGAAATGTTG
1 ATTGAAATGTTA
* *
99984044 ATT-TAA-GTGA
1 ATTGAAATGTTA
99984054 ATTGAAATGTTA
1 ATTGAAATGTTA
*
99984066 ATTGAAATGTTG
1 ATTGAAATGTTA
* *
99984078 ATT-TAA-GTGA
1 ATTGAAATGTTA
99984088 ATTGAAATGTTA
1 ATTGAAATGTTA
99984100 TTTGTTTGAA
Statistics
Matches: 41, Mismatches: 11, Indels: 8
0.68 0.18 0.13
Matches are distributed among these distances:
10 10 0.24
11 8 0.20
12 23 0.56
ACGTcount: A:0.38, C:0.00, G:0.21, T:0.41
Consensus pattern (12 bp):
ATTGAAATGTTA
Found at i:99984072 original size:34 final size:34
Alignment explanation
Indices: 99984032--99984099 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
99984022 TGAGAATGAC
99984032 ATTGAAATGTTGATTTAAGTGAATTGAAATGTTA
1 ATTGAAATGTTGATTTAAGTGAATTGAAATGTTA
99984066 ATTGAAATGTTGATTTAAGTGAATTGAAATGTTA
1 ATTGAAATGTTGATTTAAGTGAATTGAAATGTTA
99984100 TTTGTTTGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.38, C:0.00, G:0.21, T:0.41
Consensus pattern (34 bp):
ATTGAAATGTTGATTTAAGTGAATTGAAATGTTA
Found at i:99985730 original size:25 final size:25
Alignment explanation
Indices: 99985672--99985744 Score: 94
Period size: 26 Copynumber: 2.9 Consensus size: 25
99985662 AATTTTCTTG
* *
99985672 AAATTTTACAAAGGGTAAAATCGTCA
1 AAATTTTAC-TAGGGTAAAATTGTCA
*
99985698 AAATTTTATTAGGGGTAAAATTGTCA
1 AAATTTTACTA-GGGTAAAATTGTCA
99985724 AAA-TTTACTAGGGTAAAATTG
1 AAATTTTACTAGGGTAAAATTG
99985745 GGGTTGGAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
24 11 0.26
25 7 0.17
26 24 0.57
ACGTcount: A:0.42, C:0.07, G:0.18, T:0.33
Consensus pattern (25 bp):
AAATTTTACTAGGGTAAAATTGTCA
Found at i:99987422 original size:42 final size:43
Alignment explanation
Indices: 99987368--99987474 Score: 116
Period size: 43 Copynumber: 2.5 Consensus size: 43
99987358 GATTTACGTG
* * *
99987368 TAAGACCATGTCTGGGACA-TCAT-CATCG-TATTTGATTTCCTA
1 TAAGACCCTGTCTGGGACAGT--TGCATCGATATTTGATTACATA
*
99987410 TAAGACCCTGTCTGGGACAGTTGCATCGATATTTGATTACATG
1 TAAGACCCTGTCTGGGACAGTTGCATCGATATTTGATTACATA
99987453 TAAGACCAC-GTCTGGGAC-GTTG
1 TAAGACC-CTGTCTGGGACAGTTG
99987475 GCATTGTATG
Statistics
Matches: 57, Mismatches: 4, Indels: 8
0.83 0.06 0.12
Matches are distributed among these distances:
41 1 0.02
42 27 0.47
43 28 0.49
44 1 0.02
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (43 bp):
TAAGACCCTGTCTGGGACAGTTGCATCGATATTTGATTACATA
Found at i:100007797 original size:43 final size:42
Alignment explanation
Indices: 100007699--100007810 Score: 127
Period size: 42 Copynumber: 2.6 Consensus size: 42
100007689 CGTTGGCATC
* *
100007699 GATTACATGTAAGACCATGTCTGGGACATCGTCATTGTATTT
1 GATTACATGTAAGACCATGTCTGGGACATCGGCATCGTATTT
* * * *
100007741 GATTTCGTGTAAGACCCTGTCTGGGATAGT-GGCATCGATATTT
1 GATTACATGTAAGACCATGTCTGGGACA-TCGGCATCG-TATTT
* *
100007784 GATTACATGTAAGACCACGTCTAGGAC
1 GATTACATGTAAGACCATGTCTGGGAC
100007811 GTTGGCATTG
Statistics
Matches: 56, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
42 29 0.52
43 27 0.48
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (42 bp):
GATTACATGTAAGACCATGTCTGGGACATCGGCATCGTATTT
Found at i:100007817 original size:43 final size:42
Alignment explanation
Indices: 100007670--100007818 Score: 125
Period size: 43 Copynumber: 3.7 Consensus size: 42
100007660 TGTGATTTTG
*
100007670 TGTAATACCACGTCTGGGACGTTGGCATC------GATTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTACA
* * * * * * *
100007706 TGTAAGACCATGTCTGGGACATCGTCATTGTATTTGATTTCG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTACA
*
100007748 TGTAAGACC-CTGTCTGGGATAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGA-CGTTGGCATCG-TATTTGATTACA
*
100007791 TGTAAGACCACGTCTAGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
100007819 TGTACGAGCC
Statistics
Matches: 84, Mismatches: 18, Indels: 15
0.72 0.15 0.13
Matches are distributed among these distances:
36 23 0.27
42 28 0.33
43 32 0.38
44 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.32
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTACA
Found at i:100008478 original size:11 final size:13
Alignment explanation
Indices: 100008466--100008503 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 13
100008456 TGATTATGAA
100008466 TTGGT-TGAAAAT
1 TTGGTATGAAAAT
100008478 TTGGTATGAAATGAT
1 TTGGTATGAAA--AT
100008493 TTGGTATGAAA
1 TTGGTATGAAA
100008504 TGATTTGGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.22
13 5 0.22
15 13 0.57
ACGTcount: A:0.34, C:0.00, G:0.26, T:0.39
Consensus pattern (13 bp):
TTGGTATGAAAAT
Found at i:100008496 original size:15 final size:15
Alignment explanation
Indices: 100008476--100008512 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
100008466 TTGGTTGAAA
100008476 ATTTGGTATGAAATG
1 ATTTGGTATGAAATG
100008491 ATTTGGTATGAAATG
1 ATTTGGTATGAAATG
100008506 ATTTGGT
1 ATTTGGT
100008513 TTTGAACTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.30, C:0.00, G:0.27, T:0.43
Consensus pattern (15 bp):
ATTTGGTATGAAATG
Found at i:100019404 original size:23 final size:23
Alignment explanation
Indices: 100019378--100019421 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
100019368 ATTCATTGGT
100019378 TCATTTACGCAT-TAATCACATAC
1 TCATTTACGCATAT-ATCACATAC
*
100019401 TCATTTAGGCATATATCACAT
1 TCATTTACGCATATATCACAT
100019422 TACACATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.34, C:0.23, G:0.07, T:0.36
Consensus pattern (23 bp):
TCATTTACGCATATATCACATAC
Found at i:100022626 original size:40 final size:39
Alignment explanation
Indices: 100022571--100022804 Score: 312
Period size: 40 Copynumber: 5.9 Consensus size: 39
100022561 GTATGAGCAT
100022571 TTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 TTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
100022610 GTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 -TTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
* *
100022650 TTTGTGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCA
1 -TTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
* *
100022690 TTTGTGCGAGCTACTATATCCAGGCTAAGTCCCGAAGGCA
1 -TTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
* *
100022730 TTGGTGCGAGTTACTATATCCGGGCTATGT-CCAAAGGCA
1 TT-GTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
* * * *
100022769 TTGAGCAAG-TAGCTATATCC-GGTTAAATCCCGAAGG
1 TTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
100022805 TACTTGGCTT
Statistics
Matches: 174, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
37 7 0.04
38 19 0.11
39 12 0.07
40 136 0.78
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
Found at i:100030796 original size:81 final size:79
Alignment explanation
Indices: 100030595--100030853 Score: 368
Period size: 81 Copynumber: 3.3 Consensus size: 79
100030585 CGGATGATAA
* *
100030595 CCGGGCTAAGTCCCGAAGGCATTTG-CGCTAGTGACTAGT-TCCGGGCTAAGTCCC-AAAGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTCG--AGTTACTA-TATCCGGGCTAAGTCCCGAAGGCATT
100030657 TGTGCGA-TTACTATAT
63 TGTGCGAGTTACTATAT
*
100030673 CCGGGCTAAGT-CCGAA-GCATTTGTGGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
* *
100030736 GCGAGTTATTACAT
66 GCGAGTTACTATAT
*
100030750 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGCTTACTATATCCGGGCTAAGTCCCGAAGGCATTG
1 CCGGGCTAAGTCCCGAAGGCATTTGT-CGAG-TTACTATATCCGGGCTAAGTCCCGAAGGCATTT
100030815 GTGCGAGTTACTATAT
64 GTGCGAGTTACTATAT
*
100030831 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
100030854 GAGAAGTAGC
Statistics
Matches: 163, Mismatches: 10, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
74 1 0.01
75 22 0.13
76 21 0.13
77 24 0.15
78 16 0.10
79 8 0.05
80 3 0.02
81 68 0.42
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGT
GCGAGTTACTATAT
Found at i:100030854 original size:40 final size:40
Alignment explanation
Indices: 100030595--100030853 Score: 377
Period size: 40 Copynumber: 6.6 Consensus size: 40
100030585 CGGATGATAA
* * *
100030595 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
100030635 CCGGGCTAAGTCCC-AAAGCATTTGTGCGA-TTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
100030673 CCGGGCTAAGT-CCGAA-GCATTTGTG-GAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
100030710 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
100030750 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGCTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TTACTATAT
*
100030791 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
100030831 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
100030854 GAGAAGTAGC
Statistics
Matches: 200, Mismatches: 12, Indels: 14
0.88 0.05 0.06
Matches are distributed among these distances:
36 2 0.01
37 32 0.16
38 24 0.12
39 21 0.10
40 85 0.43
41 36 0.18
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:100046096 original size:53 final size:52
Alignment explanation
Indices: 100045912--100046119 Score: 211
Period size: 55 Copynumber: 3.9 Consensus size: 52
100045902 ATTAGGCTTT
* * * * * *
100045912 AAGGATACGATGTAAGACCATGCCATGGCATGGAAATTGGTAAGGCTTCTAAGGT
1 AAGGATACCATGTAAGACCATGTCAAGACATGG-CATTGGTAA-G-TTCTAAGGC
* *
100045967 AAGGATACCATGTAAGACCATATCAAGACATGGCATTGATAAGTTACTGTAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT-C--TAAGGC
* * *
100046022 AAAGG-TCCCATGTAAGACCATGTCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTC-TAAGGC
* * *
100046075 CAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT
100046120 TCAAACGGAT
Statistics
Matches: 128, Mismatches: 20, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
52 5 0.04
53 43 0.34
54 8 0.06
55 68 0.53
56 4 0.03
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (52 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCTAAGGC
Found at i:100046104 original size:108 final size:110
Alignment explanation
Indices: 100045921--100046119 Score: 278
Period size: 108 Copynumber: 1.8 Consensus size: 110
100045911 TAAGGATACG
* *
100045921 ATGTAAGACCATGCCATGGCATGGAAATTGGTAAGGCTTCTAAGGTAAGGATACCATGTAAGACC
1 ATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGCTTCTAAGGCAAGGATACCATGTAAGACC
*
100045986 ATATCAAGACATGGCATTGATAAGTTACTGTAAGGCAAAGGTCCC
66 ATATCAAGACATGGCAATGATAAGTTACTGTAAGGCAAAGGTCCC
* * * *
100046031 ATGTAAGACCATGTCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCCAGGATACCATGTAAGAC
1 ATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGCTTC-TAAGGCAAGGATACCATGTAAGAC
* * *
100046093 CATGTCGAGACATGGCAATGGTAAGTT
65 CATATCAAGACATGGCAATGATAAGTT
100046120 TCAAACGGAT
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.59
109 7 0.09
110 22 0.28
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (110 bp):
ATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGCTTCTAAGGCAAGGATACCATGTAAGACC
ATATCAAGACATGGCAATGATAAGTTACTGTAAGGCAAAGGTCCC
Found at i:100046378 original size:16 final size:16
Alignment explanation
Indices: 100046357--100046387 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
100046347 ATAAATTTGA
100046357 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
100046373 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
100046388 AGTGAAGAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:100051477 original size:30 final size:30
Alignment explanation
Indices: 100051443--100051500 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
100051433 CATGGCCATG
100051443 ACACACAGACGTGTAG-TCTACCCGTGTGTC
1 ACACACAGACGTGTAGAT-TACCCGTGTGTC
* * *
100051473 ACACACGGGCGTGTGGATTACCCGTGTG
1 ACACACAGACGTGTAGATTACCCGTGTG
100051501 GAAGTGCTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 23 0.96
31 1 0.04
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (30 bp):
ACACACAGACGTGTAGATTACCCGTGTGTC
Found at i:100056103 original size:40 final size:40
Alignment explanation
Indices: 100056047--100056226 Score: 249
Period size: 40 Copynumber: 4.5 Consensus size: 40
100056037 CGGATGATAA
*
100056047 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-T
*
100056087 CCGGGCTAAG-CTCCGAAGGAATTTGTGCGAGTTG-CTATAT
1 CCGGGCTAAGTC-CCGAAGGCATTTGTGCGAG-TGACTATAT
*
100056127 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
* * *
100056167 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
*
100056207 CTGGGCTAAGTCCCGAAGGC
1 CCGGGCTAAGTCCCGAAGGC
100056227 TTTTAAGCAA
Statistics
Matches: 127, Mismatches: 8, Indels: 10
0.88 0.06 0.07
Matches are distributed among these distances:
39 2 0.02
40 121 0.95
41 4 0.03
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
Found at i:100056246 original size:80 final size:79
Alignment explanation
Indices: 100056043--100056259 Score: 242
Period size: 80 Copynumber: 2.7 Consensus size: 79
100056033 TATTCGGATG
* * *
100056043 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAG-CTCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGT-ATTATA-TCCGGGCTAAGTC-CCAAAGG
*
100056106 AATTTGTGCGAGTTGCT
63 AATTTGTGCGAGTTACT
* * * *
100056123 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCAAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TATTATATCCGGGCTAAGTCCCAAAGGAA
100056188 TTTGTGCGAGTTACT
65 TTTGTGCGAGTTACT
* * ** * *
100056203 ATAACTGGGCTAAGTCCCGAAGGCTTTTAAGCAAGTAGTTATATTC-GGCTAAATCCC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTA-TTATATCCGGGCTAAGTCCC
100056260 GAAGATGCTT
Statistics
Matches: 119, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
79 12 0.10
80 104 0.87
81 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTATTATATCCGGGCTAAGTCCCAAAGGAAT
TTGTGCGAGTTACT
Found at i:100056530 original size:22 final size:21
Alignment explanation
Indices: 100056489--100056532 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
100056479 GAATGTGCAT
100056489 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
100056511 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
100056533 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:100064037 original size:40 final size:40
Alignment explanation
Indices: 100063982--100064246 Score: 408
Period size: 40 Copynumber: 6.6 Consensus size: 40
100063972 GGATGATAAT
* *
100063982 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TC
* *
100064022 CGGGCTAAG-CTCCGAAGGTATTTGTTGCTAGTTACTATATC
1 CGGGCTAAGTC-CCGAAGGCATTTG-TGCGAGTTACTATATC
100064063 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* *
100064103 TGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
100064143 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* * *
100064183 CGGGCGAAGTCCCGAAGGCATTTGTGCGAGTTACTCTAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
100064223 CGGGCTAAGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
100064247 AGCAAGTAGT
Statistics
Matches: 209, Mismatches: 12, Indels: 8
0.91 0.05 0.03
Matches are distributed among these distances:
39 1 0.00
40 172 0.82
41 34 0.16
42 2 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:100064261 original size:120 final size:120
Alignment explanation
Indices: 100063977--100064278 Score: 387
Period size: 120 Copynumber: 2.5 Consensus size: 120
100063967 TATTCGGATG
* * *
100063977 ATAATCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAG-CTCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGT-ATTATA-TCCGGGCTAAGTC-CCGAAGG
* * *
100064040 TATTTGTTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
63 CATTTGTTGCGAGTTACTATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * * *
100064098 ATATCTGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TATTATATCCGGGCTAAGTCCCGAAGGCA
100064163 TTTG-TGCGAGTTACTATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTTACT
65 TTTGTTGCGAGTTACTATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * * *
100064218 CTAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGTTATATTC-GGCCAAATCCCGAAG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTA-TTATATCCGGGCTAAGTCCCGAAG
100064279 ATGCTTGGGT
Statistics
Matches: 159, Mismatches: 18, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
119 15 0.09
120 84 0.53
121 57 0.36
122 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (120 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTATTATATCCGGGCTAAGTCCCGAAGGCAT
TTGTTGCGAGTTACTATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:100064545 original size:22 final size:21
Alignment explanation
Indices: 100064504--100064547 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
100064494 GAATGTGCAT
100064504 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
100064526 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
100064548 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:100069890 original size:42 final size:43
Alignment explanation
Indices: 100069826--100069937 Score: 138
Period size: 42 Copynumber: 2.6 Consensus size: 43
100069816 CGTTGGCATC
*
100069826 GATTACGTGTAAGACCATGTCTGGGACA-TCAGCATTG-TATTT
1 GATTACGTGTAAGACCATGTCTGGGACAGT-AGCATCGATATTT
* * *
100069868 GATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTT
1 GATTACGTGTAAGACCATGTCTGGGACAGTAGCATCGATATTT
* * *
100069911 GATTACATGTAAGACCACGTCTAGGAC
1 GATTACGTGTAAGACCATGTCTGGGAC
100069938 GTTGGCATTG
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
42 31 0.53
43 28 0.47
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACAGTAGCATCGATATTT
Found at i:100069944 original size:43 final size:42
Alignment explanation
Indices: 100069796--100069945 Score: 145
Period size: 43 Copynumber: 3.7 Consensus size: 42
100069786 ATGTGATTTT
100069796 GTGTAAGACCACGTCTGGGACGTTGGCATC------GATTAC
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTAC
* * ** * *
100069832 GTGTAAGACCATGTCTGGGACATCAGCATTGTATTTGATTTC
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTAC
100069874 GTGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTTGATTAC
1 GTGTAAGACCAC-GTCTGGGAC-GTTGGCATCG-TATTTGATTAC
* *
100069917 ATGTAAGACCACGTCTAGGACGTTGGCAT
1 GTGTAAGACCACGTCTGGGACGTTGGCAT
100069946 TGTACGAGCC
Statistics
Matches: 89, Mismatches: 14, Indels: 15
0.75 0.12 0.13
Matches are distributed among these distances:
36 25 0.28
42 30 0.34
43 33 0.37
44 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTAC
Found at i:100074433 original size:17 final size:18
Alignment explanation
Indices: 100074411--100074451 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
100074401 GTTTAAATGG
100074411 ATTTAGCCCAGA-TGGTA
1 ATTTAGCCCAGACTGGTA
**
100074428 ATTTAGCCTGGACTGGTA
1 ATTTAGCCCAGACTGGTA
100074446 ATTTAG
1 ATTTAG
100074452 ATCTGAACTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (18 bp):
ATTTAGCCCAGACTGGTA
Found at i:100076398 original size:19 final size:19
Alignment explanation
Indices: 100076374--100076420 Score: 94
Period size: 19 Copynumber: 2.5 Consensus size: 19
100076364 CTGCGGATAC
100076374 GGGCGTGTCTAGGGCACAT
1 GGGCGTGTCTAGGGCACAT
100076393 GGGCGTGTCTAGGGCACAT
1 GGGCGTGTCTAGGGCACAT
100076412 GGGCGTGTC
1 GGGCGTGTC
100076421 CCTGTGCCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.13, C:0.21, G:0.45, T:0.21
Consensus pattern (19 bp):
GGGCGTGTCTAGGGCACAT
Found at i:100078469 original size:23 final size:23
Alignment explanation
Indices: 100078443--100078486 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
100078433 ATTCATTGGT
100078443 TCATTTACGCAT-TAATCACATAC
1 TCATTTACGCATAT-ATCACATAC
*
100078466 TCATTTAGGCATATATCACAT
1 TCATTTACGCATATATCACAT
100078487 TACACATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.34, C:0.23, G:0.07, T:0.36
Consensus pattern (23 bp):
TCATTTACGCATATATCACATAC
Found at i:100083798 original size:22 final size:22
Alignment explanation
Indices: 100083751--100083800 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
100083741 CAAACTAAAA
* **
100083751 CACCACCATACAACCACCGTTT
1 CACCACCATACAACCACCATAG
*
100083773 CACCACCATACAACCACTATAG
1 CACCACCATACAACCACCATAG
100083795 CACCAC
1 CACCAC
100083801 TACATCACCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.36, C:0.46, G:0.04, T:0.14
Consensus pattern (22 bp):
CACCACCATACAACCACCATAG
Found at i:100086828 original size:55 final size:53
Alignment explanation
Indices: 100086740--100086974 Score: 155
Period size: 55 Copynumber: 4.4 Consensus size: 53
100086730 CATTAGGCTT
* * * *
100086740 TAAGGATACGATGTAAGACCATGCCATGGCATGGAAATTGGTAAGGTTTCTAAGG
1 TAAGGATACCATGTAAGACCATGCAAAGACATGG-AATTGGTAA-GTTTCTAAGG
* * * *
100086795 TAAGGATACCATGTAAGACCATGTAAAGACATGGCATTGATAAGTTACTATAAGG
1 TAAGGATACCATGTAAGACCATGCAAAGACATGGAATTGGTAAGTT--TCTAAGG
* * * * *
100086850 CAAAGG-TCCCATGTAAGACCATGCCAATG-CATGGCATTGGTGAG-TTCATAAGG
1 -TAAGGATACCATGTAAGACCATG-CAAAGACATGGAATTGGTAAGTTTC-TAAGG
** * *
100086903 CCAGGATACCATGTAAGACCATGTC-GAGATATGGCAA-TGGTAAGTTTC-AA--
1 TAAGGATACCATGTAAGACCATG-CAAAGACATGG-AATTGGTAAGTTTCTAAGG
**
100086953 -AAGGATATGATGTAAGACCATG
1 TAAGGATACCATGTAAGACCATG
100086975 ACAAGTCATG
Statistics
Matches: 144, Mismatches: 27, Indels: 24
0.74 0.14 0.12
Matches are distributed among these distances:
49 19 0.13
52 7 0.05
53 35 0.24
54 12 0.08
55 64 0.44
56 7 0.05
ACGTcount: A:0.35, C:0.15, G:0.26, T:0.24
Consensus pattern (53 bp):
TAAGGATACCATGTAAGACCATGCAAAGACATGGAATTGGTAAGTTTCTAAGG
Found at i:100086937 original size:53 final size:56
Alignment explanation
Indices: 100086796--100086948 Score: 172
Period size: 53 Copynumber: 2.8 Consensus size: 56
100086786 TTTCTAAGGT
* * *
100086796 AAGGATACCATGTAAGACCATGTAAAGACATGGCATTGATAAGTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATGTCAAGATATGGCATTGGTAAGTTACTATAAGGCA
* * * *
100086852 AAGG-TCCCATGTAAGACCATGCCAATG-CATGGCATTGGTGAGTT-C-ATAAGGC-
1 AAGGATACCATGTAAGACCATGTCAA-GATATGGCATTGGTAAGTTACTATAAGGCA
* * *
100086904 CAGGATACCATGTAAGACCATGTCGAGATATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGTCAAGATATGGCATTGGTAAGTT
100086949 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 12, Indels: 9
0.80 0.12 0.09
Matches are distributed among these distances:
52 4 0.05
53 39 0.48
54 1 0.01
55 33 0.40
56 5 0.06
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.24
Consensus pattern (56 bp):
AAGGATACCATGTAAGACCATGTCAAGATATGGCATTGGTAAGTTACTATAAGGCA
Found at i:100086947 original size:108 final size:110
Alignment explanation
Indices: 100086750--100086948 Score: 271
Period size: 108 Copynumber: 1.8 Consensus size: 110
100086740 TAAGGATACG
*
100086750 ATGTAAGACCATGCCATGGCATGGAAATTGGTAAGGTTTCTAAGGTAAGGATACCATGTAAGACC
1 ATGTAAGACCATGCCATGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACC
*
100086815 ATGTAAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCC
66 ATGTAAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCC
* * *
100086860 ATGTAAGACCATGCCAAT-GCATGG-CATTGGTGA-G-TTCATAAGGCCAGGATACCATGTAAGA
1 ATGTAAGACCATGCC-ATGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAGA
** * *
100086921 CCATGTCGAGATATGGCAATGGTAAGTT
64 CCATGTAAAGACATGGCAATGATAAGTT
100086949 TCAAAAGGAT
Statistics
Matches: 78, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
107 3 0.04
108 45 0.58
109 7 0.09
110 21 0.27
111 2 0.03
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.25
Consensus pattern (110 bp):
ATGTAAGACCATGCCATGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACC
ATGTAAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCC
Done.