Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 299 of 349
Found at i:100087208 original size:16 final size:16
Alignment explanation
Indices: 100087187--100087217 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
100087177 ATAAATTTGA
100087187 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
100087203 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
100087218 AGTGAAGAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:100094505 original size:55 final size:53
Alignment explanation
Indices: 100094417--100094671 Score: 234
Period size: 55 Copynumber: 4.8 Consensus size: 53
100094407 ATTAGGGTTT
*
100094417 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCTAAGGC
* * * * *
100094472 AAGGATGCCATGTAAGACCATGTCAAGAAATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT--TCTAAGGC
* * * * *
100094527 AAATG-TCCCATCTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-TAAGGC
* * *
100094580 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
* ** * * *
100094629 AAGGATACGACATAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
100094672 GTACCCGTGT
Statistics
Matches: 165, Mismatches: 29, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
49 37 0.22
52 6 0.04
53 40 0.24
54 11 0.07
55 68 0.41
56 3 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
Found at i:100094623 original size:108 final size:110
Alignment explanation
Indices: 100094424--100094624 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
100094414 TTTAAGGATA
* *
100094424 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATGCCATGTAAGA
1 CCATCTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
*
100094489 CCATGTCAAGAAATGGCATTGATAAGTTACTATAAGGCAAATGTC
66 CCATGTCAAGAAATGGCAATGATAAGTTACTATAAGGCAAATGTC
*
100094534 CCATCTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATCTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
* * *
100094596 ACCATGTCGAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGAAATGGCAATGATAAGTT
100094625 TCAAAAGGAT
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.57
109 7 0.08
110 26 0.31
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATCTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGAAATGGCAATGATAAGTTACTATAAGGCAAATGTC
Found at i:100094884 original size:16 final size:16
Alignment explanation
Indices: 100094863--100094893 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
100094853 ATAAATTTGA
100094863 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
100094879 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
100094894 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:100105791 original size:68 final size:68
Alignment explanation
Indices: 100105640--100105797 Score: 169
Period size: 68 Copynumber: 2.3 Consensus size: 68
100105630 CTAGCCAATT
* * * *
100105640 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGGATCACACATGCGACTTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGGATCACACATGCGACCTAGCTACA
**
100105705 TTTA
65 CATA
* *
100105709 TATCTCCCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTA
1 TATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGGATCACACATGCGACCTAGCTA
100105771 CTACATA
63 C-ACATA
100105778 GTATCTCGTAGCTCTCTTGT
1 -TATCTCGTAGCTCTCTTGT
100105798 ACACATGATG
Statistics
Matches: 76, Mismatches: 8, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
68 35 0.46
69 8 0.11
70 7 0.09
71 26 0.34
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (68 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGGATCACACATGCGACCTAGCTACAC
ATA
Found at i:100114926 original size:49 final size:49
Alignment explanation
Indices: 100114820--100114952 Score: 133
Period size: 49 Copynumber: 2.7 Consensus size: 49
100114810 GTACATTAAA
* * * *
100114820 GTCAATGCCCTGTCCCAGACACGTCTTACATTGACTTTCATATATCGAG
1 GTCAATGCCATATCCCAGACACGTCTTACACTGACTCTCATATATCGAG
* * * * * *
100114869 GCCGATGCCATATCCCAGACATGTCTTACACTGGCTCTCATTTAT-TAG
1 GTCAATGCCATATCCCAGACACGTCTTACACTGACTCTCATATATCGAG
* * *
100114917 TGTCAATGCCATCTCCCACACAGGTCTTACACTGAC
1 -GTCAATGCCATATCCCAGACACGTCTTACACTGAC
100114953 ACACAACAAG
Statistics
Matches: 67, Mismatches: 16, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
48 2 0.03
49 65 0.97
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (49 bp):
GTCAATGCCATATCCCAGACACGTCTTACACTGACTCTCATATATCGAG
Found at i:100122643 original size:49 final size:49
Alignment explanation
Indices: 100122570--100122677 Score: 139
Period size: 49 Copynumber: 2.2 Consensus size: 49
100122560 GTGCAGATAG
* *
100122570 GTCTTACACTGACTTTCATATATCGAG-GTTGATGCCATGTCCC-AGACAA
1 GTCTTACACTGACTATCATATATCG-GTGTCGATGCCATGTCCCAAG-CAA
* * *
100122619 GTCTTACACTGGCTATCATCTATCGGTGTCGATGCCATGTCCCAAGCAG
1 GTCTTACACTGACTATCATATATCGGTGTCGATGCCATGTCCCAAGCAA
100122668 GTCTTACACT
1 GTCTTACACT
100122678 AGCTTGTATA
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
48 1 0.02
49 49 0.94
50 2 0.04
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (49 bp):
GTCTTACACTGACTATCATATATCGGTGTCGATGCCATGTCCCAAGCAA
Found at i:100124895 original size:22 final size:20
Alignment explanation
Indices: 100124856--100124902 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 20
100124846 TATAAAGTTG
100124856 ATAATAATTAATATATATT-
1 ATAATAATTAATATATATTA
100124875 ATAATAGATATAATTATATATTA
1 ATAATA-AT-TAA-TATATATTA
100124898 ATAAT
1 ATAAT
100124903 TATCATCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.25
20 2 0.08
21 3 0.12
22 8 0.33
23 5 0.21
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (20 bp):
ATAATAATTAATATATATTA
Found at i:100125009 original size:29 final size:29
Alignment explanation
Indices: 100124955--100125011 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
100124945 CCTTTTGAAA
* * *
100124955 ATATTTACAAAAGGATACATCTAATTTTT
1 ATATTTACAAAAAGATACACCAAATTTTT
100124984 ATATTTACAAAAAGAGTA-ACCAAATTTT
1 ATATTTACAAAAAGA-TACACCAAATTTT
100125012 AAAAATAGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 22 0.92
30 2 0.08
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (29 bp):
ATATTTACAAAAAGATACACCAAATTTTT
Found at i:100131733 original size:21 final size:20
Alignment explanation
Indices: 100131709--100131750 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
100131699 TGAAATGCAA
100131709 TCAACCTAACA-TGAATTAAAT
1 TCAACCTAA-ATTG-ATTAAAT
*
100131730 TCAAGCTAAATTGATTAAAT
1 TCAACCTAAATTGATTAAAT
100131750 T
1 T
100131751 AACTATTCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.45, C:0.14, G:0.07, T:0.33
Consensus pattern (20 bp):
TCAACCTAAATTGATTAAAT
Found at i:100151229 original size:47 final size:49
Alignment explanation
Indices: 100151166--100151437 Score: 249
Period size: 47 Copynumber: 5.7 Consensus size: 49
100151156 TTTGTGTTAT
*
100151166 AGTGTAA-AACATGTCTGGGACAT-GCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATTATGAGAGCC
** * * * *
100151212 AGTGTAAGACCATGTCTGGGACATGGCATC-GATATTGA-GATGAGATCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CGATTATGAGAGCC
* * * *
100151260 AGTATAAGA-CATGTTTGGGACAT-GCATCGGCCTCGA-GATGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATTATG-AGAGCC
* * * *
100151306 ATTGTAAGACCATGTCTGGGACATGGCATCGG-CACGGGTATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC-GAT-TATGAGAGCC
* * * * * *
100151356 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCAATTTTGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATTATGAGAGCC
100151405 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
100151438 ATTATACCCT
Statistics
Matches: 180, Mismatches: 33, Indels: 23
0.76 0.14 0.10
Matches are distributed among these distances:
46 27 0.15
47 47 0.26
48 28 0.16
49 40 0.22
50 36 0.20
51 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATTATGAGAGCC
Found at i:100151430 original size:99 final size:94
Alignment explanation
Indices: 100151165--100151438 Score: 320
Period size: 94 Copynumber: 2.9 Consensus size: 94
100151155 GTTTGTGTTA
* *
100151165 TAGTGTAAAACATGTCTGGGACATGCATCGGCCAC-ATTATGAGAGCCAGTGTAAGACCATGTCT
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAATTATGA-AGCCAGTGTAAGACCATGTCT
** ** *
100151229 GGGACATGGCATCGATATTGAGATGAGATC
65 GGGACATGGCATCGGCAGGGAGATGAGAGC
* * * * *
100151259 TAGTATAAGACATGTTTGGGACATGCATCGGCCTCGA-GATGTAAGCCATTGTAAGACCATGTCT
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAATTATG-AAGCCAGTGTAAGACCATGTCT
100151323 GGGACATGGCATCGGCACGGGTATG-TGAGAGC
65 GGGACATGGCATCGGCA-GGG-A-GATGAGAGC
* * *
100151355 TAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCAATTTTGATAGTCAGTGTAAGACCATGT
1 TAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCAATTATGA-AGCCAGTGTAAGACCATGT
100151420 CTGGGACATGGCATCGGCA
63 CTGGGACATGGCATCGGCA
100151439 TTATACCCTA
Statistics
Matches: 152, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
94 69 0.45
95 3 0.02
96 16 0.11
97 14 0.09
98 12 0.08
99 38 0.25
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.25
Consensus pattern (94 bp):
TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAATTATGAAGCCAGTGTAAGACCATGTCTG
GGACATGGCATCGGCAGGGAGATGAGAGC
Found at i:100152628 original size:20 final size:21
Alignment explanation
Indices: 100152589--100152628 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
100152579 GTCATAATGG
*
100152589 CCACATAGGCATGTTGCCCTT
1 CCACACAGGCATGTTGCCCTT
*
100152610 CCACACAGGCGTG-TGCCCT
1 CCACACAGGCATGTTGCCCT
100152629 GTTTCAAGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.17, C:0.38, G:0.23, T:0.23
Consensus pattern (21 bp):
CCACACAGGCATGTTGCCCTT
Found at i:100159881 original size:49 final size:49
Alignment explanation
Indices: 100159802--100160046 Score: 294
Period size: 49 Copynumber: 4.9 Consensus size: 49
100159792 TAGCCGAAGC
* * *
100159802 TATCTGGTACGCATAGTAGCCTGCACTTAGTACT-CTACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTAC-ACACGCGACCAAT
* * * *
100159851 TATCCGGTACACGTAGTAGCCTGCATTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* * * *
100159901 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* * * * *
100159952 TATCAGGTACGCATAGTAGCCTGCATTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
*
100160001 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
100160047 TCACAATAGC
Statistics
Matches: 164, Mismatches: 28, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
49 79 0.48
50 48 0.29
51 37 0.23
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:100160038 original size:100 final size:99
Alignment explanation
Indices: 100159801--100160046 Score: 334
Period size: 100 Copynumber: 2.5 Consensus size: 99
100159791 GTAGCCGAAG
* * * * * *
100159801 CTATCTGGTACGCATAGTAGCCTGCACTTAGTACT-CTACATGCGACCAATTATCCGGTACACGT
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTAC-ACACGTGACCAATTATCAGGTACACAT
*
100159865 AGTAGCCTGCATTTAGTACTACACACGTGACCTAA
65 AGTAGCCTGCATTTAGTACTACACACGCGACCTAA
* * * *
100159900 CCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACA
*
100159965 TAGTAGCCTGCATTTAGTACTACACATGCGACC-AA
64 TAGTAGCCTGCATTTAGTACTACACACGCGACCTAA
*
100160000 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
100160047 TCACAATAGC
Statistics
Matches: 128, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
99 38 0.30
100 48 0.38
101 42 0.33
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (99 bp):
CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATA
GTAGCCTGCATTTAGTACTACACACGCGACCTAA
Found at i:100160728 original size:30 final size:30
Alignment explanation
Indices: 100160694--100160753 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
100160684 CTTTAATACG
100160694 AACTTTGGCAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
100160724 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
100160754 GGCTCGAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:100170401 original size:50 final size:50
Alignment explanation
Indices: 100170274--100170567 Score: 277
Period size: 50 Copynumber: 5.8 Consensus size: 50
100170264 AACTGAAGCT
* *
100170274 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACC-AACA
1 ATCTAGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACC
* * * *
100170323 ATTTGGTACACGTAGTAGCCTGTACTTAGTACTACACATGTGACCTAACC
1 ATCTAGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACC
* * * * * **
100170373 ATCTAATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTT
1 ATCTAGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CC
* ** * * * ** *
100170424 TTCGGGTACGCATAGTAGCCCGCACTTAGTACTACTCATGCAACCTAACT
1 ATCTAGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACC
* **
100170474 ATCTAGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTAAAACC
1 ATCTAGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT--AACC
* * **
100170526 ATCTTA-AACACATAGTGGCCTGCACAGAGTACTACACATGTG
1 ATC-TAGTACACATAGTAGCCTGCACTTAGTACTACACATGTG
100170568 TTCTCACAAT
Statistics
Matches: 194, Mismatches: 46, Indels: 7
0.79 0.19 0.03
Matches are distributed among these distances:
49 42 0.22
50 80 0.41
51 35 0.18
52 35 0.18
53 2 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (50 bp):
ATCTAGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACC
Found at i:100170471 original size:101 final size:99
Alignment explanation
Indices: 100170280--100170518 Score: 309
Period size: 101 Copynumber: 2.4 Consensus size: 99
100170270 AGCTATCTGG
* * * *
100170280 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAACAATTTGGTACACGTAGTAGCCTG
1 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACAATTTGGTACACATAGTAGCCCG
* **
100170345 TACTTAGTACTACACATGTGACCTAACCATCTAA
66 CACTTAGTACTACACATGCAACCTAACCATCTAA
* ** *
100170379 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAA-GTTTTCGGGTACGCATAGTAGC
1 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCAACAATTT--GGTACACATAGTAGC
* * *
100170443 CCGCACTTAGTACTACTCATGCAACCTAACTATCTAG
63 CCGCACTTAGTACTACACATGCAACCTAACCATCTAA
*
100170480 TACACGTAGTAGCCTGCACTTAGTACTACACACATGACC
1 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
100170519 TAAAACCATC
Statistics
Matches: 121, Mismatches: 16, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
99 38 0.31
100 4 0.03
101 79 0.65
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (99 bp):
TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACAATTTGGTACACATAGTAGCCCG
CACTTAGTACTACACATGCAACCTAACCATCTAA
Found at i:100170518 original size:151 final size:151
Alignment explanation
Indices: 100170278--100170563 Score: 396
Period size: 151 Copynumber: 1.9 Consensus size: 151
100170268 GAAGCTATCT
* ** * *
100170278 GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAACAATTTGGTACACGTAGTAGCC
1 GGTACACATAGTAGCCCGCACTTAGTACTACACATGCAACCAACAATCTAGTACACGTAGTAGCC
* ** * **
100170343 TGTACTTAGTACTACACATGTGACCT-AACCATC-TAATACACGTAGTAGCCTGCACTTAGTACT
66 TGCACTTAGTACTACACACATGACCTAAACCATCTTAA-ACACATAGTAGCCTGCACAGAGTACT
100170406 ACACACGTGATCGAAGTTTTCG
130 ACACACGTGATCGAAGTTTTCG
* * *
100170428 GGTACGCATAGTAGCCCGCACTTAGTACTACTCATGCAACCTAACTATCTAGTACACGTAGTAGC
1 GGTACACATAGTAGCCCGCACTTAGTACTACACATGCAACC-AACAATCTAGTACACGTAGTAGC
*
100170493 CTGCACTTAGTACTACACACATGACCTAAAACCATCTTAAACACATAGTGGCCTGCACAGAGTAC
65 CTGCACTTAGTACTACACACATGACCT-AAACCATCTTAAACACATAGTAGCCTGCACAGAGTAC
100170558 TACACA
129 TACACA
100170564 TGTGTTCTCA
Statistics
Matches: 117, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
150 36 0.31
151 44 0.38
153 34 0.29
154 3 0.03
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (151 bp):
GGTACACATAGTAGCCCGCACTTAGTACTACACATGCAACCAACAATCTAGTACACGTAGTAGCC
TGCACTTAGTACTACACACATGACCTAAACCATCTTAAACACATAGTAGCCTGCACAGAGTACTA
CACACGTGATCGAAGTTTTCG
Found at i:100173177 original size:15 final size:15
Alignment explanation
Indices: 100173157--100173195 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
100173147 GATTAAAAAG
*
100173157 TCCAAGATAGAGAAA
1 TCCAAGATAAAGAAA
100173172 TCCAAGATAAAGAAA
1 TCCAAGATAAAGAAA
100173187 TCCAAGATA
1 TCCAAGATA
100173196 CAATATCATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.54, C:0.15, G:0.15, T:0.15
Consensus pattern (15 bp):
TCCAAGATAAAGAAA
Found at i:100176145 original size:39 final size:39
Alignment explanation
Indices: 100176102--100176226 Score: 160
Period size: 39 Copynumber: 3.2 Consensus size: 39
100176092 CTTTAACCCA
** *
100176102 GATATTTTTCAAGCACGTAGCCTGCGGACCTCAAGTCCG
1 GATATTTTTCAAGCATATAGCCTGCGGACCTCATGTCCG
* * * *
100176141 GATATATTTCTAGCATATAGCCTGTGGATCTCATGTCCG
1 GATATTTTTCAAGCATATAGCCTGCGGACCTCATGTCCG
* *
100176180 GATATTTTTCCAGCATATAGCCTGCGGACCTCATGTCTG
1 GATATTTTTCAAGCATATAGCCTGCGGACCTCATGTCCG
*
100176219 AATATTTT
1 GATATTTT
100176227 CAATCTCAAA
Statistics
Matches: 73, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 73 1.00
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (39 bp):
GATATTTTTCAAGCATATAGCCTGCGGACCTCATGTCCG
Found at i:100179929 original size:16 final size:15
Alignment explanation
Indices: 100179905--100179934 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
100179895 AACTATTTTA
100179905 TTACAAATTTCACTC
1 TTACAAATTTCACTC
100179920 TTACATAATTTCACT
1 TTACA-AATTTCACT
100179935 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:100180242 original size:50 final size:50
Alignment explanation
Indices: 100180145--100180426 Score: 266
Period size: 50 Copynumber: 5.6 Consensus size: 50
100180135 TCTGGTACGT
* * * *
100180145 ATAGTAGCC-GCACTTAGTACTACACATG-CAACGAACAATCTAGTACAC
1 ATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTAGTACAC
* * *
100180193 GTAGTAGCCTACACTTAGTACTACACATGTGACCTAACCATCTAATACAC
1 ATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTAGTACAC
* * *** * * *
100180243 GTAGTAGCCTGCACTTAGTACTACACATGTGATC-AAAGTTGTTGGGTACGC
1 ATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCAT-CT-AGTACAC
* * * *
100180294 ATAATAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACAC
1 ATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTAGTACAC
* * *
100180344 ATAGTAGCCTGCACTTAGTACTACACACGTGACATAAAACCATCTTA-AACAC
1 ATAGTAGCCTGCACTTAGTACTACACATGTGACCT--AACCATC-TAGTACAC
* * *
100180396 ATAGTAGCTTGCACATAGTACTACAGATGTG
1 ATAGTAGCCTGCACTTAGTACTACACATGTG
100180427 TTTCACAATG
Statistics
Matches: 190, Mismatches: 36, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
48 8 0.04
49 21 0.11
50 85 0.45
51 35 0.18
52 40 0.21
53 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (50 bp):
ATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTAGTACAC
Found at i:100180359 original size:151 final size:150
Alignment explanation
Indices: 100180138--100180426 Score: 402
Period size: 151 Copynumber: 1.9 Consensus size: 150
100180128 GAAGTTATCT
* * *
100180138 GGTACGTATAGTAGCCGCACTTAGTACTACACATGCAACGAACAATCTAGTACACGTAGTAGCCT
1 GGTACGCATAATAGCCGCACTTAGTACTACACATGCAACGAACAATCTAGTACACATAGTAGCCT
* * * *
100180203 ACACTTAGTACTACACATGTGACCT-AACCATC-TAATACACGTAGTAGCCTGCACTTAGTACTA
66 ACACTTAGTACTACACACGTGACATAAACCATCTTAA-ACACATAGTAGCCTGCACATAGTACTA
100180266 CACATGTGATCAAAGTTGTTG
130 CACATGTGATCAAAGTTGTTG
* * * *
100180287 GGTACGCATAATAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACATAGTAGC
1 GGTACGCATAATAGCC-GCACTTAGTACTACACATGC-AACGAACAATCTAGTACACATAGTAGC
* *
100180352 CTGCACTTAGTACTACACACGTGACATAAAACCATCTTAAACACATAGTAGCTTGCACATAGTAC
64 CTACACTTAGTACTACACACGTGACAT-AAACCATCTTAAACACATAGTAGCCTGCACATAGTAC
*
100180417 TACAGATGTG
128 TACACATGTG
100180427 TTTCACAATG
Statistics
Matches: 121, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
149 14 0.12
150 20 0.17
151 46 0.38
153 38 0.31
154 3 0.02
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.26
Consensus pattern (150 bp):
GGTACGCATAATAGCCGCACTTAGTACTACACATGCAACGAACAATCTAGTACACATAGTAGCCT
ACACTTAGTACTACACACGTGACATAAACCATCTTAAACACATAGTAGCCTGCACATAGTACTAC
ACATGTGATCAAAGTTGTTG
Found at i:100193216 original size:21 final size:21
Alignment explanation
Indices: 100193192--100193242 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
100193182 ATAGTCTAAG
*
100193192 CACACGGGCATGTGGGGTGGC
1 CACACGGGCATGTGGGGTAGC
* * *
100193213 CACACAGGCGTGTGGGTTAGC
1 CACACGGGCATGTGGGGTAGC
100193234 CACACGGGC
1 CACACGGGC
100193243 TGGCCTCTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.18, C:0.27, G:0.41, T:0.14
Consensus pattern (21 bp):
CACACGGGCATGTGGGGTAGC
Found at i:100193645 original size:22 final size:22
Alignment explanation
Indices: 100193601--100193645 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
100193591 AGTGACCCTA
*
100193601 GTCGGAAAGCGGTCTCGGGACC
1 GTCGGAAAGCGGTCTCGGAACC
*
100193623 GTCGGATAGCGAGTCTC-GAACC
1 GTCGGAAAGCG-GTCTCGGAACC
100193645 G
1 G
100193646 CTAGACCGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.20, C:0.27, G:0.38, T:0.16
Consensus pattern (22 bp):
GTCGGAAAGCGGTCTCGGAACC
Found at i:100193981 original size:56 final size:56
Alignment explanation
Indices: 100193895--100194070 Score: 334
Period size: 56 Copynumber: 3.1 Consensus size: 56
100193885 GCAAGGGATG
100193895 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
100193951 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAGTAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
100194007 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
100194063 ATGGGCAA
1 ATGGGCAA
100194071 TAAACTAATA
Statistics
Matches: 117, Mismatches: 3, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
56 117 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:100195353 original size:40 final size:40
Alignment explanation
Indices: 100195200--100195346 Score: 174
Period size: 40 Copynumber: 3.6 Consensus size: 40
100195190 TCGAATGATG
* * * *
100195200 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
100195240 TCCGGACTAAGAT-CCGAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCG-AAGGCATTTGTGCGAGTTACTAAA
*
100195281 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
100195322 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
100195347 AACGAGTAGC
Statistics
Matches: 93, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
40 59 0.63
41 27 0.29
42 7 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:100197790 original size:24 final size:24
Alignment explanation
Indices: 100197758--100197831 Score: 104
Period size: 24 Copynumber: 3.3 Consensus size: 24
100197748 AAACAATATA
100197758 TATACAAATCCCATAGATTACTCT
1 TATACAAATCCCATAGATTACTCT
*
100197782 TATACAAATCCCATAG--TA-T-A
1 TATACAAATCCCATAGATTACTCT
100197802 TATACAAATCCCATAGATTACTCT
1 TATACAAATCCCATAGATTACTCT
100197826 TA-ACAA
1 TATACAA
100197832 TTAATCATCT
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
20 16 0.36
21 1 0.02
22 4 0.09
23 5 0.11
24 18 0.41
ACGTcount: A:0.42, C:0.23, G:0.04, T:0.31
Consensus pattern (24 bp):
TATACAAATCCCATAGATTACTCT
Found at i:100197807 original size:20 final size:21
Alignment explanation
Indices: 100197753--100197819 Score: 91
Period size: 20 Copynumber: 3.1 Consensus size: 21
100197743 TAAGGAAACA
100197753 ATATATATACAAATCCCATAG
1 ATATATATACAAATCCCATAG
*
100197774 ATTACTCTTATACAAATCCCATAG
1 A-TA-T-ATATACAAATCCCATAG
100197798 -TATATATACAAATCCCATAG
1 ATATATATACAAATCCCATAG
100197818 AT
1 AT
100197820 TACTCTTAAC
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
20 16 0.40
21 3 0.08
22 4 0.10
23 1 0.03
24 16 0.40
ACGTcount: A:0.43, C:0.21, G:0.04, T:0.31
Consensus pattern (21 bp):
ATATATATACAAATCCCATAG
Found at i:100213668 original size:46 final size:44
Alignment explanation
Indices: 100213551--100213726 Score: 131
Period size: 46 Copynumber: 3.8 Consensus size: 44
100213541 GGGTATGATG
*
100213551 CCGATGACATGTCCCAGACATGGTCTTACACTGGCTCATCTTGTAA
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCATCTCGTAA
* * * * * *
100213597 CCGATGCATGTCCTAAAAATTTCTTACATTGGCTTACATCTCG-AGG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGC-T-CATCTCGTA-A
* * *
100213643 TCGATGCATGTCCCAGACATGTCTTACACTAGCTC-TCATCTTAA
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCTCATC-TCGTAA
* * *
100213687 TGCTGATGCCATGTCCCAGACATGGTATTACACTAGCTCA
1 --CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCA
100213727 CAATAACCCA
Statistics
Matches: 101, Mismatches: 19, Indels: 17
0.74 0.14 0.12
Matches are distributed among these distances:
43 2 0.02
44 14 0.14
45 15 0.15
46 42 0.42
47 14 0.14
48 14 0.14
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (44 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCTCATCTCGTAA
Found at i:100215310 original size:28 final size:28
Alignment explanation
Indices: 100215269--100215324 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
100215259 CAGCTACATT
*
100215269 TGGCACTTAATGTGCGAGATATTGAGTA
1 TGGCACTTAATGTGCAAGATATTGAGTA
*
100215297 TGGCACTTAGTGTGCAAGATATTGAGTA
1 TGGCACTTAATGTGCAAGATATTGAGTA
100215325 CTCATCTGCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.29, C:0.11, G:0.29, T:0.32
Consensus pattern (28 bp):
TGGCACTTAATGTGCAAGATATTGAGTA
Found at i:100222403 original size:40 final size:40
Alignment explanation
Indices: 100222343--100222443 Score: 121
Period size: 40 Copynumber: 2.5 Consensus size: 40
100222333 TGACGACAAA
* * *
100222343 TCGGCTATTTGTGGCCCTTAGCATGAGAATCGACATAGCT
1 TCGGCTATATATGGCACTTAGCATGAGAATCGACATAGCT
** * * * *
100222383 TCGGCTATATATGGCACTTAGTGTGCGATTTGAGATAGCT
1 TCGGCTATATATGGCACTTAGCATGAGAATCGACATAGCT
100222423 TCGGCTATATATGGCACTTAG
1 TCGGCTATATATGGCACTTAG
100222444 TGTATGCTTT
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.33
Consensus pattern (40 bp):
TCGGCTATATATGGCACTTAGCATGAGAATCGACATAGCT
Found at i:100222444 original size:40 final size:40
Alignment explanation
Indices: 100222377--100222487 Score: 159
Period size: 40 Copynumber: 2.8 Consensus size: 40
100222367 GAGAATCGAC
100222377 ATAGCTTCGGCTATATATGGCACTTAGTGTGCGATTTGAG
1 ATAGCTTCGGCTATATATGGCACTTAGTGTGCGATTTGAG
** *
100222417 ATAGCTTCGGCTATATATGGCACTTAGTGTATGCTTTGAG
1 ATAGCTTCGGCTATATATGGCACTTAGTGTGCGATTTGAG
* * * *
100222457 ATAGCTTCAGCTATGTACGACACTTAGTGTG
1 ATAGCTTCGGCTATATATGGCACTTAGTGTG
100222488 TGAGATATCG
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 63 1.00
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.35
Consensus pattern (40 bp):
ATAGCTTCGGCTATATATGGCACTTAGTGTGCGATTTGAG
Found at i:100222515 original size:28 final size:28
Alignment explanation
Indices: 100222475--100222586 Score: 154
Period size: 28 Copynumber: 4.0 Consensus size: 28
100222465 AGCTATGTAC
*
100222475 GACACTTAGTGTGTGAGATATCGAGTAT
1 GACACTTAGTGTGCGAGATATCGAGTAT
* *
100222503 GACACTTAGTGTGCGAGATATTGAGTGTT
1 GACACTTAGTGTGCGAGATATCGAGT-AT
100222532 G-CACTTAGTGTGCGAGATATCGAGTAT
1 GACACTTAGTGTGCGAGATATCGAGTAT
* * *
100222559 GAAACTTAGTGTGTGAGATATTGAGTAT
1 GACACTTAGTGTGCGAGATATCGAGTAT
100222587 TCAACTGCAT
Statistics
Matches: 74, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
27 2 0.03
28 70 0.95
29 2 0.03
ACGTcount: A:0.28, C:0.10, G:0.29, T:0.33
Consensus pattern (28 bp):
GACACTTAGTGTGCGAGATATCGAGTAT
Found at i:100222543 original size:56 final size:56
Alignment explanation
Indices: 100222477--100222584 Score: 189
Period size: 56 Copynumber: 1.9 Consensus size: 56
100222467 CTATGTACGA
* *
100222477 CACTTAGTGTGTGAGATATCGAGTATGACACTTAGTGTGCGAGATATTGAGTGTTG
1 CACTTAGTGTGCGAGATATCGAGTATGAAACTTAGTGTGCGAGATATTGAGTGTTG
*
100222533 CACTTAGTGTGCGAGATATCGAGTATGAAACTTAGTGTGTGAGATATTGAGT
1 CACTTAGTGTGCGAGATATCGAGTATGAAACTTAGTGTGCGAGATATTGAGT
100222585 ATTCAACTGC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 49 1.00
ACGTcount: A:0.27, C:0.10, G:0.30, T:0.33
Consensus pattern (56 bp):
CACTTAGTGTGCGAGATATCGAGTATGAAACTTAGTGTGCGAGATATTGAGTGTTG
Found at i:100230626 original size:24 final size:23
Alignment explanation
Indices: 100230527--100230627 Score: 141
Period size: 24 Copynumber: 4.2 Consensus size: 23
100230517 AAAGACTGCT
100230527 AGGAGAAGATTTAGGAGCTGATA
1 AGGAGAAGATTTAGGAGCTGATA
100230550 AGG-GAGAGAATTTAGGAGCTGATA
1 AGGAGA-AG-ATTTAGGAGCTGATA
*
100230574 AGGGAGAGGATTTAGGAGCTGATAA
1 A-GGAGAAGATTTAGGAGCTGAT-A
100230599 AGGAGAAGATTTAGGAGCTGATCA
1 AGGAGAAGATTTAGGAGCTGAT-A
100230623 AGGAG
1 AGGAG
100230628 CAGGAGTTGG
Statistics
Matches: 70, Mismatches: 3, Indels: 9
0.85 0.04 0.11
Matches are distributed among these distances:
22 2 0.03
23 5 0.07
24 56 0.80
25 5 0.07
26 2 0.03
ACGTcount: A:0.38, C:0.05, G:0.38, T:0.20
Consensus pattern (23 bp):
AGGAGAAGATTTAGGAGCTGATA
Found at i:100235524 original size:27 final size:27
Alignment explanation
Indices: 100235493--100235670 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
100235483 TAAATTGTAC
100235493 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
100235520 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
100235546 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
100235574 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
100235602 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
100235629 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
100235656 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
100235671 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:100235607 original size:82 final size:81
Alignment explanation
Indices: 100235494--100235649 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
100235484 AAATTGTACA
* *
100235494 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
100235558 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
100235575 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
100235640 TGCGAGTTGA
65 TGCGAATTGA
100235650 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:100235661 original size:82 final size:81
Alignment explanation
Indices: 100235490--100235670 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
100235480 GATTAAATTG
* *
100235490 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
100235555 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
100235571 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
100235635 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
100235653 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
100235671 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:100243317 original size:27 final size:27
Alignment explanation
Indices: 100243286--100243463 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
100243276 TAAATTGTAC
*
100243286 AGCACTAAGTGTGTGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
100243313 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
100243339 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
100243367 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
100243395 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
100243422 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
100243449 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
100243464 GACTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:100243400 original size:82 final size:81
Alignment explanation
Indices: 100243287--100243442 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
100243277 AAATTGTACA
* * *
100243287 GCACTAAGTGTGTGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
100243351 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
100243368 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
100243433 TGCGAGTTGA
65 TGCGAATTGA
100243443 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 14 0.21
82 51 0.77
83 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:100243454 original size:82 final size:81
Alignment explanation
Indices: 100243283--100243463 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
100243273 GATTAAATTG
* * *
100243283 TACAGCACTAAGTGTGTGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
100243348 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
100243364 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
100243428 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
100243446 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
100243464 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 17 0.20
82 66 0.80
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:100249182 original size:24 final size:23
Alignment explanation
Indices: 100249150--100249248 Score: 135
Period size: 24 Copynumber: 4.1 Consensus size: 23
100249140 AGGCTGTCAC
*
100249150 GAGAAGATTTAGGAGATGATAAG
1 GAGAAGATTTAGGAGCTGATAAG
*
100249173 TGAGAGGATTTAGGAGCTGATAAGG
1 -GAGAAGATTTAGGAGCTGATAA-G
*
100249198 GAGAGGATTTAGGAGCTGATAAAG
1 GAGAAGATTTAGGAGCTGAT-AAG
100249222 GAGAAGATTTAGGAGCTGATCAAG
1 GAGAAGATTTAGGAGCTGAT-AAG
100249246 GAG
1 GAG
100249249 CAGGAGTTGG
Statistics
Matches: 69, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
24 66 0.96
25 3 0.04
ACGTcount: A:0.37, C:0.04, G:0.37, T:0.21
Consensus pattern (23 bp):
GAGAAGATTTAGGAGCTGATAAG
Found at i:100249212 original size:12 final size:12
Alignment explanation
Indices: 100249150--100249241 Score: 53
Period size: 12 Copynumber: 7.7 Consensus size: 12
100249140 AGGCTGTCAC
*
100249150 GAGAAGATTTAG
1 GAGATGATTTAG
*
100249162 GAGATGA-TAAG
1 GAGATGATTTAG
*
100249173 TGAGAGGATTTAG
1 -GAGATGATTTAG
* *
100249186 GAGCTGA-TAAGG
1 GAGATGATTTA-G
*
100249198 GAGAGGATTTAG
1 GAGATGATTTAG
* **
100249210 GAGCTGATAAAG
1 GAGATGATTTAG
*
100249222 GAGAAGATTTAG
1 GAGATGATTTAG
*
100249234 GAGCTGAT
1 GAGATGAT
100249242 CAAGGAGCAG
Statistics
Matches: 56, Mismatches: 20, Indels: 8
0.67 0.24 0.10
Matches are distributed among these distances:
11 5 0.09
12 46 0.82
13 5 0.09
ACGTcount: A:0.37, C:0.03, G:0.37, T:0.23
Consensus pattern (12 bp):
GAGATGATTTAG
Found at i:100250106 original size:16 final size:18
Alignment explanation
Indices: 100250077--100250116 Score: 50
Period size: 16 Copynumber: 2.3 Consensus size: 18
100250067 AGTTCGTTTC
100250077 GGTAGTAGATTAA-TGT-
1 GGTAGTAGATTAATTGTA
100250093 GGTAGTA-ATATAATTGTA
1 GGTAGTAGAT-TAATTGTA
100250111 GGTAGT
1 GGTAGT
100250117 TCATGCGTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 2 0.10
16 10 0.48
17 3 0.14
18 6 0.29
ACGTcount: A:0.33, C:0.00, G:0.30, T:0.38
Consensus pattern (18 bp):
GGTAGTAGATTAATTGTA
Found at i:100250941 original size:33 final size:34
Alignment explanation
Indices: 100250864--100250944 Score: 85
Period size: 33 Copynumber: 2.4 Consensus size: 34
100250854 TATGGGCCGT
* *
100250864 ACTGTTATCTGAATAAGGGGCTGAGGCCCAGTTT
1 ACTGTTATCTGAATAAGGGGCTCAGGCCCAGTTC
* * * *
100250898 AATGTAATCTGAA-AA-GGGCTCTGGCCTAGTATC
1 ACTGTTATCTGAATAAGGGGCTCAGGCCCAGT-TC
100250931 ACTGTTATCTGAAT
1 ACTGTTATCTGAAT
100250945 GGGCTTAGGC
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
32 12 0.32
33 14 0.38
34 11 0.30
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (34 bp):
ACTGTTATCTGAATAAGGGGCTCAGGCCCAGTTC
Found at i:100261023 original size:12 final size:12
Alignment explanation
Indices: 100261008--100261035 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
100260998 GGTCGCTCAG
100261008 CCCCTCGTTCGA
1 CCCCTCGTTCGA
100261020 CCCCTCGTTCGA
1 CCCCTCGTTCGA
100261032 CCCC
1 CCCC
100261036 CTGAGCCTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.57, G:0.14, T:0.21
Consensus pattern (12 bp):
CCCCTCGTTCGA
Found at i:100266863 original size:29 final size:29
Alignment explanation
Indices: 100266812--100266869 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
100266802 CCTATCATAA
* *
100266812 AAATGCTAGGAAAAAGGAAGCCTTTAGTGG
1 AAATGCTACGAAAAAGAAAGCCTTT-GTGG
100266842 AAAT-CTACGAAAAAGAAAGCCTTTGTGG
1 AAATGCTACGAAAAAGAAAGCCTTTGTGG
100266870 TGCACTCTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 4 0.15
29 18 0.69
30 4 0.15
ACGTcount: A:0.41, C:0.12, G:0.26, T:0.21
Consensus pattern (29 bp):
AAATGCTACGAAAAAGAAAGCCTTTGTGG
Found at i:100269080 original size:54 final size:54
Alignment explanation
Indices: 100269013--100269201 Score: 179
Period size: 54 Copynumber: 3.5 Consensus size: 54
100269003 TGGCCATGTC
* * **
100269013 AAGAAGACCATATAGTGTAAGACCTAGTTTGAGAATATCGTGTCAT-ATGGGGAA
1 AAGAAGACAATATAGTGTAAGACCTAGTCTGAGAATATCGAATCATAAT-GGGAA
* * * *
100269067 AAGAAGACAATATAGTGTAAGACCTAGTCTGGGACTATGGAATTATAATGGGAA
1 AAGAAGACAATATAGTGTAAGACCTAGTCTGAGAATATCGAATCATAATGGGAA
* * * * *
100269121 AAGAAGGCAATATAATGTAAGACCTAGCCT-AGGAA-AACGACATCAT-ATGGGCAT
1 AAGAAGACAATATAGTGTAAGACCTAGTCTGA-GAATATCGA-ATCATAATGGG-AA
* *
100269175 ATGAAGACCATATAGTGTAAGACCTAG
1 AAGAAGACAATATAGTGTAAGACCTAG
100269202 CTGGGACTAT
Statistics
Matches: 110, Mismatches: 21, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
53 8 0.07
54 100 0.91
55 2 0.02
ACGTcount: A:0.40, C:0.13, G:0.24, T:0.23
Consensus pattern (54 bp):
AAGAAGACAATATAGTGTAAGACCTAGTCTGAGAATATCGAATCATAATGGGAA
Found at i:100269449 original size:59 final size:59
Alignment explanation
Indices: 100269341--100269568 Score: 312
Period size: 59 Copynumber: 3.8 Consensus size: 59
100269331 GGGGAAGCCA
* * * ***
100269341 TTGTGTTTGTTCTCTGATATATGTGAGCTTTAGTGGCATAATATGTTATATGTGGAAGCTT
1 TTGTGGTTGTTCT-TGA-ATATATGAGCCTTAGTGGTGGAATATGTTATATGTGGAAGCTT
*
100269402 TTGTGGTTGTTATTGAATATATGAGCCTTAGTGGTGGAATATGTTATATGTGGAAGCTT
1 TTGTGGTTGTTCTTGAATATATGAGCCTTAGTGGTGGAATATGTTATATGTGGAAGCTT
*
100269461 TTGTGGTTGTTCTTGAATATATGAGCCTTAGTGGTGGAATATGTTATATGTGGAAGCCT
1 TTGTGGTTGTTCTTGAATATATGAGCCTTAGTGGTGGAATATGTTATATGTGGAAGCTT
* * * *
100269520 TTGTGGCTGTTCTCTGATATATGTGAGCCTCAGTGGCGGAATATGTTAT
1 TTGTGGTTGTTCT-TGA-ATATATGAGCCTTAGTGGTGGAATATGTTAT
100269569 GAGGAAGCCT
Statistics
Matches: 152, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
59 107 0.70
60 6 0.04
61 39 0.26
ACGTcount: A:0.21, C:0.09, G:0.28, T:0.42
Consensus pattern (59 bp):
TTGTGGTTGTTCTTGAATATATGAGCCTTAGTGGTGGAATATGTTATATGTGGAAGCTT
Found at i:100269542 original size:32 final size:30
Alignment explanation
Indices: 100269387--100269544 Score: 85
Period size: 28 Copynumber: 5.3 Consensus size: 30
100269377 CATAATATGT
* *
100269387 TATATGTGGAAGCTTTTGTGGTTGTTATTGA
1 TATATGTGGAAGCCTTTGTGG-TGTTCTTGA
* * *** *
100269418 -ATATAT-G-AGCCTTAGTGGTGGAATATGT
1 TATATGTGGAAGCCTTTGTGGTGTTCT-TGA
*
100269446 TATATGTGGAAGCTTTTGTGGTTGTTCTTGA
1 TATATGTGGAAGCCTTTGTGG-TGTTCTTGA
* * *** *
100269477 -ATATAT-G-AGCCTTAGTGGTGGAATATGT
1 TATATGTGGAAGCCTTTGTGGTGTTCT-TGA
100269505 TATATGTGGAAGCCTTTGTGGCTGTTCTCTGA
1 TATATGTGGAAGCCTTTGTGG-TGTTCT-TGA
100269537 TATATGTG
1 TATATGTG
100269545 AGCCTCAGTG
Statistics
Matches: 90, Mismatches: 27, Indels: 19
0.66 0.20 0.14
Matches are distributed among these distances:
27 7 0.08
28 22 0.24
29 12 0.13
30 12 0.13
31 21 0.23
32 16 0.18
ACGTcount: A:0.22, C:0.08, G:0.28, T:0.42
Consensus pattern (30 bp):
TATATGTGGAAGCCTTTGTGGTGTTCTTGA
Found at i:100272579 original size:18 final size:19
Alignment explanation
Indices: 100272537--100272571 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
100272527 ACAAGGACTT
100272537 CTTCCT-CTCAAATAGCAA
1 CTTCCTCCTCAAATAGCAA
100272555 CTTCCTCCTC-AATAGCA
1 CTTCCTCCTCAAATAGCA
100272572 GGTTCCTCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 13 0.81
19 3 0.19
ACGTcount: A:0.29, C:0.37, G:0.06, T:0.29
Consensus pattern (19 bp):
CTTCCTCCTCAAATAGCAA
Found at i:100276038 original size:14 final size:14
Alignment explanation
Indices: 100276019--100276057 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
100276009 TAGCAAAGAC
*
100276019 CGAAAAGCATACGG
1 CGAAAAGCAAACGG
* *
100276033 CTAAAAGCAAATGG
1 CGAAAAGCAAACGG
100276047 CGAAAAGCAAA
1 CGAAAAGCAAA
100276058 AGTGCCAAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.51, C:0.18, G:0.23, T:0.08
Consensus pattern (14 bp):
CGAAAAGCAAACGG
Found at i:100278802 original size:40 final size:38
Alignment explanation
Indices: 100278765--100278980 Score: 209
Period size: 40 Copynumber: 5.4 Consensus size: 38
100278755 ATATCCGGAC
*
100278765 TAAGATCCGAAGGCATTTGTGCGAGATACAAATTCCGGGT
1 TAAG-TCCGAAGGCATTCGTGCGAGATACAAA-TCCGGGT
* * *
100278805 TAAGCCCGGAAGGCCTTTGTGCGAGATACTAAATCCGGGT
1 TAAGTCC-GAAGGCATTCGTGCGAGATAC-AAATCCGGGT
* *
100278845 TAAGTCTCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGTC-CGAAGGCATTCGTGCGAGATA-CAAATCCGGGT
* *
100278885 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGT-CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGT
* * * *
100278925 TAAGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGC
1 TAAGT-CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGT
*
100278964 TATGTCCCGAAGGCATT
1 TAAGT-CCGAAGGCATT
100278981 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 12, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
39 35 0.22
40 118 0.75
41 5 0.03
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (38 bp):
TAAGTCCGAAGGCATTCGTGCGAGATACAAATCCGGGT
Found at i:100278856 original size:80 final size:80
Alignment explanation
Indices: 100278771--100278980 Score: 248
Period size: 80 Copynumber: 2.6 Consensus size: 80
100278761 GGACTAAGAT
* *
100278771 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAG-CCCGGAAGGCCTTTGTGCGAGATAC
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGTCCC-GAAGGCATTCGTGCGAGATAC
100278834 TAAATCCGGGTTAAGTC
64 TAAATCCGGGTTAAGTC
* * * * * *
100278851 TCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTA
100278916 AATCCGGGTTAAGTC
66 AATCCGGGTTAAGTC
* * * * *
100278931 CCGAAGGCA-TTGTGTGAGTTA-CTAAAACCGGGCTATGTCCCGAAGGCATT
1 CCGAAGGCATTTGTGCGAGATATC-AAATCCGGGTTAAGTCCCGAAGGCATT
100278981 TGAACGAGGA
Statistics
Matches: 112, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
79 34 0.30
80 72 0.64
81 6 0.05
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTA
AATCCGGGTTAAGTC
Found at i:100279000 original size:79 final size:80
Alignment explanation
Indices: 100278719--100279015 Score: 223
Period size: 80 Copynumber: 3.7 Consensus size: 80
100278709 TGAATGCTGT
* ** * * * **
100278719 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
100278782 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * ** *
100278799 CCGGGTTAAG-CCCGGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCTCGAAGGCATT
1 CCGGGCTAAGTCCC-GAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATT
* *
100278862 CGTGCGAGTTATTAAAT
64 CGTGCGAGTTACTAAAA
* ** * *
100278879 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
100278943 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
100278958 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
100279016 TACGTGATTT
Statistics
Matches: 183, Mismatches: 26, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
78 16 0.09
79 50 0.27
80 103 0.56
81 14 0.08
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:100281271 original size:21 final size:21
Alignment explanation
Indices: 100281247--100281287 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
100281237 TATTGAAGAG
* *
100281247 TGTTGTGGCTACATTTGACTT
1 TGTTGTGGATACATATGACTT
100281268 TGTTGTGGATACATATGACT
1 TGTTGTGGATACATATGACT
100281288 GTGCTGATTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.12, G:0.24, T:0.44
Consensus pattern (21 bp):
TGTTGTGGATACATATGACTT
Found at i:100289464 original size:46 final size:46
Alignment explanation
Indices: 100289397--100289659 Score: 193
Period size: 46 Copynumber: 5.7 Consensus size: 46
100289387 TGTAACCCGC
*
100289397 CCATAAGCT-AACTCGGACTCAAATCAACGAGCTCGGGCGTTCGCAT
1 CCATAAG-TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* * *
100289443 CCATAAGTGAACTTGGACTCAACTCAACAAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * * * * *
100289493 -C-TCA-CGAACTCGGACTCAACTCAACAAGTTCAGTCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
100289536 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * **
100289586 -C-TCA-CGAACTCAGACTCAACTCAACGAGCTCGAACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
100289629 CCATAAGTGAACTTGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
100289660 TCCGGATGCC
Statistics
Matches: 168, Mismatches: 30, Indels: 38
0.71 0.13 0.16
Matches are distributed among these distances:
42 5 0.03
43 6 0.04
44 4 0.02
45 5 0.03
46 76 0.45
47 52 0.31
48 5 0.03
49 4 0.02
50 6 0.04
51 5 0.03
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:100289510 original size:47 final size:47
Alignment explanation
Indices: 100289458--100289617 Score: 177
Period size: 47 Copynumber: 3.4 Consensus size: 47
100289448 AGTGAACTTG
*
100289458 GACTCAACTCAACAAGCTCGGATGCCTAGTTACATCTCACGAACTCG
1 GACTCAACTCAACAAGCTCGGATGCCTAGTTACATCTCACGAACTCA
* * * * *
100289505 GACTCAACTCAACAAGTTC--A-GTC-A-TTCGCATCCATAAGTGAACTCA
1 GACTCAACTCAACAAGCTCGGATGCCTAGTT-ACAT-C-TCA-CGAACTCA
*
100289551 GACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCACGAACTCA
1 GACTCAACTCAACAAGCTCGGATGCCTAGTTACATCTCACGAACTCA
*
100289598 GACTCAACTCAACGAGCTCG
1 GACTCAACTCAACAAGCTCG
100289618 AACGTTCGCA
Statistics
Matches: 92, Mismatches: 12, Indels: 18
0.75 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 3 0.03
46 23 0.25
47 45 0.49
48 3 0.03
49 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.31, C:0.31, G:0.16, T:0.21
Consensus pattern (47 bp):
GACTCAACTCAACAAGCTCGGATGCCTAGTTACATCTCACGAACTCA
Found at i:100289517 original size:93 final size:93
Alignment explanation
Indices: 100289406--100289669 Score: 404
Period size: 93 Copynumber: 2.8 Consensus size: 93
100289396 CCCATAAGCT
* *
100289406 AACTCGGACTCAAATCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTTGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTTGGACTCAACTCAAC
*
100289471 AAGCTCGGATGCCTAGTTACATCTCACG
66 GAGCTCGGATGCCTAGTTACATCTCACG
* * * * * **
100289499 AACTCGGACTCAACTCAACAAGTTCAGTCATTCGCATCCATAAGTGAACTCAGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTTGGACTCAACTCAAC
100289564 GAGCTCGGATGCCTAGTTACATCTCACG
66 GAGCTCGGATGCCTAGTTACATCTCACG
* *
100289592 AACTCAGACTCAACTCAACGAGCTCGAACGTTCGCATCCATAAGTGAACTTGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTTGGACTCAACTCAAC
100289657 GAG-TCCGGATGCC
66 GAGCT-CGGATGCC
100289670 CAAATATCCG
Statistics
Matches: 152, Mismatches: 18, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
92 1 0.01
93 151 0.99
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTTGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCACG
Found at i:100306851 original size:21 final size:21
Alignment explanation
Indices: 100306827--100306869 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
100306817 TTTATTTCTT
*
100306827 TAGTTTACTTAGTTTAAAATC
1 TAGTTCACTTAGTTTAAAATC
100306848 TAGTTCACTTAGTTTAAAATC
1 TAGTTCACTTAGTTTAAAATC
100306869 T
1 T
100306870 TGGTTTTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.12, G:0.09, T:0.47
Consensus pattern (21 bp):
TAGTTCACTTAGTTTAAAATC
Found at i:100308910 original size:38 final size:38
Alignment explanation
Indices: 100308868--100308944 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
100308858 CTTATCACTT
100308868 TTGATCACAAACATCTAAGTTCAGTATGTTACAAAAGA
1 TTGATCACAAACATCTAAGTTCAGTATGTTACAAAAGA
100308906 TTGATCACAAACATCTAAGTTCAGTATGTTACAAAAGA
1 TTGATCACAAACATCTAAGTTCAGTATGTTACAAAAGA
100308944 T
1 T
100308945 ACAAGTATTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.30
Consensus pattern (38 bp):
TTGATCACAAACATCTAAGTTCAGTATGTTACAAAAGA
Found at i:100318162 original size:27 final size:27
Alignment explanation
Indices: 100318129--100318497 Score: 167
Period size: 27 Copynumber: 13.7 Consensus size: 27
100318119 CCCCAAATTG
*
100318129 TAAAATTACCAAAGTACCCTCGATTTA
1 TAAAATTACCAAATTACCCTCGATTTA
* ***
100318156 TAGAATTACCGTTTTACCCTCGATTTA
1 TAAAATTACCAAATTACCCTCGATTTA
***
100318183 CT-AAATTACCGTTTTACCCTCGATTTA
1 -TAAAATTACCAAATTACCCTCGATTTA
**** *
100318210 TAAAATTACTGTTTTACCCTTGATTTA
1 TAAAATTACCAAATTACCCTCGATTTA
* * ** **
100318237 CAGAATTATTATTTTACCCTCGATTTA
1 TAAAATTACCAAATTACCCTCGATTTA
* * * *
100318264 CAAAATTACTAAAATACCCTCGGTTTA
1 TAAAATTACCAAATTACCCTCGATTTA
* * *
100318291 CAAAATTACCAAAATACCCTCGA-TCA
1 TAAAATTACCAAATTACCCTCGATTTA
* * * *
100318317 GTAAAATTACCAAAATACCCTAG-TCTG
1 -TAAAATTACCAAATTACCCTCGATTTA
* * * * * * *
100318344 TAAAATTGCTAAAATACCTTTGGTTTG
1 TAAAATTACCAAATTACCCTCGATTTA
* ** *
100318371 TAAACTTACCGAAA-TACCCTTAATTTT
1 TAAAATTACC-AAATTACCCTCGATTTA
* * *
100318398 TAAAATTACCAAAATACCC-CTAGTTTG
1 TAAAATTACCAAATTACCCTCGA-TTTA
* * *
100318425 TAAAATTACCAAAATACCACT-GGTTTG
1 TAAAATTACCAAATTACC-CTCGATTTA
** * *
100318452 TGCAATTACCGAAA-TACCCTCAATTTG
1 TAAAATTACC-AAATTACCCTCGATTTA
*
100318479 TAAAATTACCAAAATACCC
1 TAAAATTACCAAATTACCC
100318498 CTAATTTACA
Statistics
Matches: 278, Mismatches: 51, Indels: 26
0.78 0.14 0.07
Matches are distributed among these distances:
26 30 0.11
27 240 0.86
28 8 0.03
ACGTcount: A:0.37, C:0.22, G:0.08, T:0.34
Consensus pattern (27 bp):
TAAAATTACCAAATTACCCTCGATTTA
Found at i:100318273 original size:54 final size:54
Alignment explanation
Indices: 100318143--100318301 Score: 185
Period size: 54 Copynumber: 2.9 Consensus size: 54
100318133 ATTACCAAAG
* * *
100318143 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACTAAATTACCGTTT
1 TACCCTCGATTTATAAAATTACTGTTTTACCCTCGATTTACTAAATTACCATTT
* **
100318197 TACCCTCGATTTATAAAATTACTGTTTTACCCTTGATTTAC-AGAATTATTATTT
1 TACCCTCGATTTATAAAATTACTGTTTTACCCTCGATTTACTA-AATTACCATTT
* **** * *
100318251 TACCCTCGATTTACAAAATTACTAAAATACCCTCGGTTTACAAAATTACCA
1 TACCCTCGATTTATAAAATTACTGTTTTACCCTCGATTTACTAAATTACCA
100318302 AAATACCCTC
Statistics
Matches: 88, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
53 1 0.01
54 86 0.98
55 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.39
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACTGTTTTACCCTCGATTTACTAAATTACCATTT
Found at i:100318309 original size:81 final size:81
Alignment explanation
Indices: 100318130--100318314 Score: 199
Period size: 81 Copynumber: 2.3 Consensus size: 81
100318120 CCCAAATTGT
* * * * **
100318130 AAAATTACCAAAGTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACTAAATTACCGT
1 AAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCAA
** *
100318195 TTTACCCTCGATTTAT
66 AATACCCTCGATTTAC
***** * ** *
100318211 AAAATTACTGTTTTACCCTTGATTTACAGAATTATTATTTTACCCTCGATTTACAAAATTACTAA
1 AAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCAA
*
100318276 AATACCCTCGGTTTAC
66 AATACCCTCGATTTAC
100318292 AAAATTACCAAAATACCCTCGAT
1 AAAATTACCAAAATACCCTCGAT
100318315 CAGTAAAATT
Statistics
Matches: 80, Mismatches: 24, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
81 80 1.00
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.36
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCAA
AATACCCTCGATTTAC
Found at i:100318336 original size:81 final size:79
Alignment explanation
Indices: 100318251--100318525 Score: 257
Period size: 81 Copynumber: 3.4 Consensus size: 79
100318241 ATTATTATTT
** * * *
100318251 TACCCTCGATTTACAAAATTACTAAAATACCCTCGGTTTACAAAATTACCAAAATACCCTCGATC
1 TACCC-CGATTTACAAAATTACTAAAATACCCT-GGTTTGTAAAATTACCGAAATACCCTCAATT
*
100318316 AGTAAAATTACCAAAA
64 TGTAAAATTACCAAAA
* * ** * * * *
100318332 TA-CCCTAGTCTGTAAAATTGCTAAAATACCTTTGGTTTGTAAACTTACCGAAATACCCTTAATT
1 TACCCCGA-TTTACAAAATTACTAAAATACC-CTGGTTTGTAAAATTACCGAAATACCCTCAATT
*
100318396 TTTAAAATTACCAAAA
64 TGTAAAATTACCAAAA
* ** * **
100318412 TACCCCTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTGCAATTACCGAAATACCCTCAATT
1 TACCCCGA-TTTACAAAATTACTAAAATACC-CTGGTTTGTAAAATTACCGAAATACCCTCAATT
100318477 TGTAAAATTACCAAAA
64 TGTAAAATTACCAAAA
* *
100318493 TACCCCTAATTTACAAAGTTAC-AGAAATACCCT
1 TACCCC-GATTTACAAAATTACTA-AAATACCCT
100318526 TGACTTTCTA
Statistics
Matches: 160, Mismatches: 29, Indels: 11
0.80 0.14 0.05
Matches are distributed among these distances:
79 2 0.01
80 63 0.39
81 94 0.59
82 1 0.01
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.30
Consensus pattern (79 bp):
TACCCCGATTTACAAAATTACTAAAATACCCTGGTTTGTAAAATTACCGAAATACCCTCAATTTG
TAAAATTACCAAAA
Found at i:100318424 original size:54 final size:52
Alignment explanation
Indices: 100318265--100318504 Score: 201
Period size: 54 Copynumber: 4.5 Consensus size: 52
100318255 CTCGATTTAC
* ** ** * **
100318265 AAAATTACTAAAATACCCTCGGTTTACAAAATTACCAAAATACCCTCGATCAGT
1 AAAATTACCAAAATACCCT-AATTTGTAAAATTACCAAAATACCCTAG-TTTGT
* * * * * *
100318319 AAAATTACCAAAATACCCTAGTCTGTAAAATTGCTAAAATACCTTTGGTTTGT
1 AAAATTACCAAAATACCCTAATTTGTAAAATTACCAAAATACC-CTAGTTTGT
* * *
100318372 AAACTTACCGAAATACCCTTAATTTTTAAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCC-TAATTTGTAAAATTACCAAAATA-CCCTAGTTTGT
** ** * *
100318426 AAAATTACCAAAATACCACTGGTTTGTGCAATTACCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACC-CTAATTTGTAAAATTACCAAAATACCCT-AGTTTGT
100318480 AAAATTACCAAAATACCCCTAATTT
1 AAAATTACCAAAATA-CCCTAATTT
100318505 ACAAAGTTAC
Statistics
Matches: 149, Mismatches: 31, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
53 41 0.28
54 103 0.69
55 5 0.03
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (52 bp):
AAAATTACCAAAATACCCTAATTTGTAAAATTACCAAAATACCCTAGTTTGT
Found at i:100318514 original size:27 final size:27
Alignment explanation
Indices: 100318292--100318504 Score: 189
Period size: 27 Copynumber: 7.9 Consensus size: 27
100318282 CTCGGTTTAC
* **
100318292 AAAATTACCAAAATA-CCCTCGATCAGT
1 AAAATTACCAAAATACCCCT-AATTTGT
* *
100318319 AAAATTACCAAAATA-CCCTAGTCTGT
1 AAAATTACCAAAATACCCCTAATTTGT
* * ** **
100318345 AAAATTGCTAAAATACCTTTGGTTTGT
1 AAAATTACCAAAATACCCCTAATTTGT
* * * *
100318372 AAACTTACCGAAATACCCTTAATTTTT
1 AAAATTACCAAAATACCCCTAATTTGT
*
100318399 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAATTTGT
* **
100318426 AAAATTACCAAAATACCACTGGTTTGT
1 AAAATTACCAAAATACCCCTAATTTGT
** *
100318453 GCAATTACCGAAATA-CCCTCAATTTGT
1 AAAATTACCAAAATACCCCT-AATTTGT
100318480 AAAATTACCAAAATACCCCTAATTT
1 AAAATTACCAAAATACCCCTAATTT
100318505 ACAAAGTTAC
Statistics
Matches: 150, Mismatches: 33, Indels: 6
0.79 0.17 0.03
Matches are distributed among these distances:
26 20 0.13
27 126 0.84
28 4 0.03
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAATTTGT
Found at i:100318520 original size:54 final size:52
Alignment explanation
Indices: 100318251--100318525 Score: 175
Period size: 54 Copynumber: 5.1 Consensus size: 52
100318241 ATTATTATTT
** * **
100318251 TACCCTCGATTTACAAAATTACTAAAATA-CCCTCGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCCCT-AATTTAC-AAATTA-CAAAA
** * *
100318305 TACCCTCGATCAGTAAAATTACCAAAATA-CCCTAGTCTGTA-AAATTGCTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCCCTAAT-T-TACAAATTAC-AAAA
* * * * * *
100318358 TACCTTTGGTTTGTAAACTTACCGAAATACCCTTAATTTTTA-AAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCCCTAA--TTTACAAATTA-CAAAA
* * ** * *
100318412 TACCC-CTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTGC-AATTACCGAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAATACCCCT-AATT-TACAAATTA-CAAAA
*
100318466 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAGTTACAGAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCCCTAATTTACAAA-TTACA-AAA
100318520 TACCCT
1 TACCCT
100318526 TGACTTTCTA
Statistics
Matches: 171, Mismatches: 35, Indels: 30
0.72 0.15 0.13
Matches are distributed among these distances:
52 3 0.02
53 40 0.23
54 121 0.71
55 6 0.04
56 1 0.01
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.30
Consensus pattern (52 bp):
TACCCTCGATTTGTAAAATTACCAAAATACCCCTAATTTACAAATTACAAAA
Found at i:100318575 original size:27 final size:27
Alignment explanation
Indices: 100318536--100318587 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
100318526 TGACTTTCTA
100318536 AAAATTATGGAAATACCATTGGTTTAC
1 AAAATTATGGAAATACCATTGGTTTAC
*
100318563 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TGGAAATACCATTGGTTT
100318588 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (27 bp):
AAAATTATGGAAATACCATTGGTTTAC
Found at i:100318672 original size:27 final size:27
Alignment explanation
Indices: 100318642--100318727 Score: 95
Period size: 27 Copynumber: 3.2 Consensus size: 27
100318632 CCACTAATCG
*
100318642 GTAAAAAGATTGTAAAGCCCCTGTAGA
1 GTAAAAAGATCGTAAAGCCCCTGTAGA
* *
100318669 GTAAAGAGATCGTAAAGCCCCTGTAGG
1 GTAAAAAGATCGTAAAGCCCCTGTAGA
** *
100318696 GTAAAGTGACCGTAAA-CCCCTGTATG-
1 GTAAAAAGATCGTAAAGCCCCTGTA-GA
100318722 GTAAAA
1 GTAAAA
100318728 TGACGAATAT
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
26 13 0.25
27 39 0.75
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.21
Consensus pattern (27 bp):
GTAAAAAGATCGTAAAGCCCCTGTAGA
Found at i:100318724 original size:26 final size:26
Alignment explanation
Indices: 100318653--100318731 Score: 97
Period size: 27 Copynumber: 3.0 Consensus size: 26
100318643 TAAAAAGATT
* *
100318653 GTAAAGCCCCTGTAGAGTAAAGAGATC
1 GTAAAGCCCCTGTAG-GTAAAGTGACC
100318680 GTAAAGCCCCTGTAGGGTAAAGTGACC
1 GTAAAGCCCCTGTA-GGTAAAGTGACC
*
100318707 GTAAA-CCCCTGTATGGTAAAATGAC
1 GTAAAGCCCCTGTA-GGTAAAGTGAC
100318732 GAATATGCCC
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
26 18 0.38
27 28 0.60
28 1 0.02
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.20
Consensus pattern (26 bp):
GTAAAGCCCCTGTAGGTAAAGTGACC
Found at i:100319561 original size:26 final size:26
Alignment explanation
Indices: 100319532--100319682 Score: 234
Period size: 26 Copynumber: 5.9 Consensus size: 26
100319522 GAGGAAGTGC
100319532 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
100319558 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
100319584 AAAAGGGATTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
100319610 AAAAGGGCTT-TGCCTCAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
100319635 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
100319661 AAAAGGGCTT-TGCCCCAATTTA
1 AAAAGGGCTTATGCCCCAGTTTA
100319683 CCGAAAATGG
Statistics
Matches: 113, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
25 34 0.30
26 79 0.70
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:100319650 original size:51 final size:51
Alignment explanation
Indices: 100319532--100319695 Score: 274
Period size: 51 Copynumber: 3.2 Consensus size: 51
100319522 GAGGAAGTGC
100319532 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
* * *
100319584 AAAAGGGATTATGCCCCAGTTTATTGAAAAGGGCTTTGCCTCAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
*
100319635 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAATTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
*
100319686 AAAATGGCTT
1 AAAAGGGCTT
100319696 TTCCCTAGTT
Statistics
Matches: 104, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
51 69 0.66
52 35 0.34
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.29
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:100319908 original size:42 final size:42
Alignment explanation
Indices: 100319851--100319941 Score: 119
Period size: 42 Copynumber: 2.2 Consensus size: 42
100319841 TAGTCTCCCC
* * ** *
100319851 AAATGGGCTTCCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGATTCCATACATCCATTGACATTACATGTGATATTG
* *
100319893 ATATGGGATTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGATTCCATACATCCATTGACATTACATGTGATATTG
100319935 AAATGGG
1 AAATGGG
100319942 CCTAAGGGCC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (42 bp):
AAATGGGATTCCATACATCCATTGACATTACATGTGATATTG
Found at i:100320043 original size:31 final size:31
Alignment explanation
Indices: 100319966--100320049 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
100319956 CGTTTACAGT
* *
100319966 AAAGGCTTTGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
100319997 AAAGGCTTCGACCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
100320028 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
100320050 TCAAGACTAA
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 5 0.10
31 44 0.90
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:100328716 original size:58 final size:57
Alignment explanation
Indices: 100328648--100328758 Score: 168
Period size: 58 Copynumber: 1.9 Consensus size: 57
100328638 TGAATGTGAC
* *
100328648 TGGGCCTAATGGGCCATATAAATGTGATTTGGGCATAATGGGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATAAATATGA-TTGGGCATAATGGGCCAAATACAGGTGATT
* * *
100328706 TGGGCCTAATGGGCCATATGAATATGATTGGGCTTAATGTGCCAAATACAGGT
1 TGGGCCTAATGGGCCATATAAATATGATTGGGCATAATGGGCCAAATACAGGT
100328759 ATGTGAATTT
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 23 0.48
58 25 0.52
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.29
Consensus pattern (57 bp):
TGGGCCTAATGGGCCATATAAATATGATTGGGCATAATGGGCCAAATACAGGTGATT
Found at i:100328749 original size:28 final size:29
Alignment explanation
Indices: 100328635--100328749 Score: 137
Period size: 29 Copynumber: 4.0 Consensus size: 29
100328625 GTGAGCATGA
*
100328635 ATATGAATGTGA-CTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
100328663 ATATAAATGTGATTTGGGCATAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
100328692 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* * *
100328721 ATATGAATATGA-TTGGGCTTAATGTGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
100328749 A
1 A
100328750 AATACAGGTA
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
28 27 0.36
29 47 0.63
30 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.30
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:100329357 original size:20 final size:21
Alignment explanation
Indices: 100329320--100329358 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
100329310 TATCCCTACA
*
100329320 TGGTGTGATAGGGGATGGAGC
1 TGGTGTGATAGCGGATGGAGC
100329341 TGGTGTG-TAGCGGATGGA
1 TGGTGTGATAGCGGATGGA
100329359 TGATTTGGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.18, C:0.05, G:0.51, T:0.26
Consensus pattern (21 bp):
TGGTGTGATAGCGGATGGAGC
Found at i:100357808 original size:114 final size:114
Alignment explanation
Indices: 100357669--100357880 Score: 415
Period size: 114 Copynumber: 1.9 Consensus size: 114
100357659 TAATCGGTAA
100357669 GTTTACTTTCCACTTATTTGGGCTTACTAAGCATGTAAATGCTTACCCCTCTCTTTTCCCTATCT
1 GTTTACTTTCCACTTATTTGGGCTTACTAAGCATGTAAATGCTTACCCCTCTCTTTTCCCTATCT
*
100357734 TACAGAGCTCGAGGACTCGTAGAGATTGTAAGACGGTTGGAGTATTGTG
66 TACAGAGCTCGAGGACTCGTAGAGATTATAAGACGGTTGGAGTATTGTG
100357783 GTTTACTTTCCACTTATTTGGGCTTACTAAGCATGTAAATGCTTACCCCTCTCTTTTCCCTATCT
1 GTTTACTTTCCACTTATTTGGGCTTACTAAGCATGTAAATGCTTACCCCTCTCTTTTCCCTATCT
100357848 TACAGAGCTCGAGGACTCGTAGAGATTATAAGA
66 TACAGAGCTCGAGGACTCGTAGAGATTATAAGA
100357881 AGGCTGGTGT
Statistics
Matches: 97, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
114 97 1.00
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.36
Consensus pattern (114 bp):
GTTTACTTTCCACTTATTTGGGCTTACTAAGCATGTAAATGCTTACCCCTCTCTTTTCCCTATCT
TACAGAGCTCGAGGACTCGTAGAGATTATAAGACGGTTGGAGTATTGTG
Found at i:100359353 original size:39 final size:40
Alignment explanation
Indices: 100359236--100359420 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
100359226 GCTACTCGTT
* *
100359236 CAAATGCCTTCGGGACATAGCCCAG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
100359276 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
100359316 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
100359355 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
100359396 CAAA-GCCTTTGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
100359421 CATCATTCAA
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 75 0.61
41 13 0.11
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:100359353 original size:79 final size:82
Alignment explanation
Indices: 100359236--100359420 Score: 211
Period size: 79 Copynumber: 2.3 Consensus size: 82
100359226 GCTACTCGTT
* * * *
100359236 CAAATGCCTTCGGGACATAGCCCAG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
100359299 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
100359316 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
100359379 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
*
100359396 CAAA-GCCTTTGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
100359421 CATCATTCAA
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 3 0.03
79 52 0.58
80 34 0.38
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:100361930 original size:23 final size:23
Alignment explanation
Indices: 100361904--100361986 Score: 130
Period size: 23 Copynumber: 3.6 Consensus size: 23
100361894 TGTCCCAAAG
*
100361904 CACACGGGTGTGTGCATTGTCTT
1 CACACGGGCGTGTGCATTGTCTT
* *
100361927 CACACGGGCATGTGTATTGTCTT
1 CACACGGGCGTGTGCATTGTCTT
*
100361950 CACACGGGCGTATGCATTGTCTT
1 CACACGGGCGTGTGCATTGTCTT
100361973 CACACGGGCGTGTG
1 CACACGGGCGTGTG
100361987 AGGCTTAACC
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 53 1.00
ACGTcount: A:0.16, C:0.24, G:0.30, T:0.30
Consensus pattern (23 bp):
CACACGGGCGTGTGCATTGTCTT
Found at i:100365205 original size:21 final size:21
Alignment explanation
Indices: 100365179--100365218 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
100365169 GAGTCTACTG
100365179 AATTTGTGATTAGAGTATCTA
1 AATTTGTGATTAGAGTATCTA
100365200 AATTTGTGATTAGAGTATC
1 AATTTGTGATTAGAGTATC
100365219 GAACCCCTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.33, C:0.05, G:0.20, T:0.42
Consensus pattern (21 bp):
AATTTGTGATTAGAGTATCTA
Found at i:100365957 original size:18 final size:18
Alignment explanation
Indices: 100365934--100365970 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
100365924 AATAGTATTT
*
100365934 TTGAAAATTTATTTGAGG
1 TTGAAAATTGATTTGAGG
100365952 TTGAAAATTGATTTGAGG
1 TTGAAAATTGATTTGAGG
100365970 T
1 T
100365971 CGGGTTATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.43
Consensus pattern (18 bp):
TTGAAAATTGATTTGAGG
Found at i:100369335 original size:47 final size:48
Alignment explanation
Indices: 100369218--100369338 Score: 136
Period size: 47 Copynumber: 2.5 Consensus size: 48
100369208 GTGCAAGTGA
* * *
100369218 TACCTTGATTTGGCTATGGGCCATGGTATGGGTATTTCAGAGAGGAGT
1 TACCTTGATTTGGCTATGGGCCATGGCATCGGTATCTCAGAGAGGAGT
* ** * * **
100369266 TATCTTGATTTGGCTACAGGCCATGGCATCGGTA-CTCTGGGATTAGT
1 TACCTTGATTTGGCTATGGGCCATGGCATCGGTATCTCAGAGAGGAGT
*
100369313 TACCTTGATTTCGCTATGGGCCATGG
1 TACCTTGATTTGGCTATGGGCCATGG
100369339 TATAGCTACT
Statistics
Matches: 59, Mismatches: 14, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
47 30 0.51
48 29 0.49
ACGTcount: A:0.19, C:0.17, G:0.30, T:0.34
Consensus pattern (48 bp):
TACCTTGATTTGGCTATGGGCCATGGCATCGGTATCTCAGAGAGGAGT
Found at i:100383204 original size:13 final size:13
Alignment explanation
Indices: 100383186--100383210 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
100383176 TCACTACTAT
100383186 TACTATTATTATA
1 TACTATTATTATA
100383199 TACTATTATTAT
1 TACTATTATTAT
100383211 CATTTTTTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (13 bp):
TACTATTATTATA
Found at i:100383849 original size:156 final size:155
Alignment explanation
Indices: 100383557--100383847 Score: 394
Period size: 156 Copynumber: 1.9 Consensus size: 155
100383547 ACAATGAGAG
* * *
100383557 TTTAGATTTTGAAAGAAATAAAAATATGTTTTTTAGTTATTTTAAAGGAAAGTTTAAATTTTTAA
1 TTTAGATTTT-AAAGAAATAAAAATATGTTTTTTAGGTATTTTAAAGAAAAGTTTAAAATTTTAA
* ** * * *
100383622 AACAAAGTTTTGATTTTTTTTTTTCAACTTTTTCAAAGTAAAGGTTTTAATCTTTAAGAAAAACA
65 AACAAAGTTTT-ATTATTTTTTTTCAACTACTTCAAAGTAAAAGCTTTAACCTTTAAGAAAAACA
100383687 GTTTTTTTATATAAAAAAAGGAGAAAT
129 GTTTTTTTATATAAAAAAAGGAGAAAT
*
100383714 TTTAGATTTT-AA-AAATAAAAATATGTTTTTTTTAGGTATTTTAAAGAAAATTTTAAAATTTTA
1 TTTAGATTTTAAAGAAATAAAAATATG--TTTTTTAGGTATTTTAAAGAAAAGTTTAAAATTTTA
* *
100383777 AAACAAA-TTTT-TTATTTTTTTT-AACTACTTCAAAGTAAAAGCTTTAGCCTTTAAGAAAAATA
64 AAACAAAGTTTTATTATTTTTTTTCAACTACTTCAAAGTAAAAGCTTTAACCTTTAAGAAAAACA
100383839 GTATTTTTT
129 GT-TTTTTT
100383848 TTAATGAGAG
Statistics
Matches: 119, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
152 35 0.29
153 16 0.13
154 13 0.11
155 6 0.05
156 39 0.33
157 10 0.08
ACGTcount: A:0.41, C:0.04, G:0.10, T:0.45
Consensus pattern (155 bp):
TTTAGATTTTAAAGAAATAAAAATATGTTTTTTAGGTATTTTAAAGAAAAGTTTAAAATTTTAAA
ACAAAGTTTTATTATTTTTTTTCAACTACTTCAAAGTAAAAGCTTTAACCTTTAAGAAAAACAGT
TTTTTTATATAAAAAAAGGAGAAAT
Found at i:100383991 original size:145 final size:142
Alignment explanation
Indices: 100383714--100383992 Score: 330
Period size: 145 Copynumber: 1.9 Consensus size: 142
100383704 AAGGAGAAAT
* * *
100383714 TTTAGATTTTAAAAATAAAAATATGTTTTTTTTAGGTATTTTAAAGAAAATTTTAAAATTTTAAA
1 TTTAGATTTTAAAAATAAAAATATATTTTTTTTAAGTATTTTAAAGAAAAGTTTAAAATTTTAAA
* * * * *
100383779 ACAAATTTTTTATTTTTTTTAACTACTTCAAAGTAAAAGCTTTAGCCTTTAAGAAAAATAGTATT
66 ACAAATGTTTTAATTTTTTTAACTACTTC--AGTAAAAGCTTTAGACTTTAAAAAAAATAATATT
100383844 TTTTTTAATGAGAG
129 TTTTTTAATGAGAG
* * * *
100383858 TTTATATTTTGAAAACTAAAAATCTATTTTTTTTAAGTCATTTT-AAGGAAAGTTTAAAATTTTA
1 TTTAGATTTT-AAAAATAAAAATATATTTTTTTTAAGT-ATTTTAAAGAAAAGTTTAAAATTTTA
* * * *
100383922 AAAC-AATGTTTTAATTTTTTTAACTATTTC-GTAATAAGGTTTTGATTTTAAAAAAAACTAATG
64 AAACAAATGTTTTAATTTTTTTAACTACTTCAGTAA-AAGCTTTAGACTTTAAAAAAAA-TAAT-
100383985 ATTTTTTT
126 ATTTTTTT
100383993 CTAGAACAAT
Statistics
Matches: 114, Mismatches: 16, Indels: 10
0.81 0.11 0.07
Matches are distributed among these distances:
141 4 0.04
142 17 0.15
143 3 0.03
144 40 0.35
145 45 0.39
146 5 0.04
ACGTcount: A:0.39, C:0.05, G:0.09, T:0.47
Consensus pattern (142 bp):
TTTAGATTTTAAAAATAAAAATATATTTTTTTTAAGTATTTTAAAGAAAAGTTTAAAATTTTAAA
ACAAATGTTTTAATTTTTTTAACTACTTCAGTAAAAGCTTTAGACTTTAAAAAAAATAATATTTT
TTTTAATGAGAG
Found at i:100384012 original size:145 final size:143
Alignment explanation
Indices: 100383711--100384025 Score: 318
Period size: 145 Copynumber: 2.2 Consensus size: 143
100383701 AAAAAGGAGA
* * * *
100383711 AATTTTAGATTTT-AAAAATAAAAATATGTTTTTTTTAGGTATTTTAAAGAAAATTTTAAAATTT
1 AATTTTTGATTTTGAAAAATAAAAATATATTTTTTTTAAGTATTTTAAAGAAAAGTTTAAAATTT
* * * * *
100383775 TAAAACAAATTTTTTATTTTTTTTAACTACTTCAAAGTAAAAGCTTTAGCCTTTAAGAAAAATAG
66 TAAAACAAATGTTTTAATTTTTTTAACTACTTC--AGTAAAAGCTTTAGACTTTAAAAAAAATAA
*
100383840 TATTTTTTTTAATGAG
129 TATTTTTTTTAA-GAC
* * * * *
100383856 AGTTTAT-ATTTTGAAAACTAAAAATCTATTTTTTTTAAGTCATTTT-AAGGAAAGTTTAAAATT
1 AATTTTTGATTTTGAAAAATAAAAATATATTTTTTTTAAGT-ATTTTAAAGAAAAGTTTAAAATT
* * * *
100383919 TTAAAAC-AATGTTTTAATTTTTTTAACTATTTC-GTAATAAGGTTTTGATTTTAAAAAAAACTA
65 TTAAAACAAATGTTTTAATTTTTTTAACTACTTCAGTAA-AAGCTTTAGACTTTAAAAAAAA-TA
100383982 ATGATTTTTTTCT-AGAAC
128 AT-ATTTTTTT-TAAG-AC
*
100384000 AATTTTTGATTTTGCAAAAAAAAAAA
1 AATTTTTGATTTTG-AAAAATAAAAA
100384026 ATTCGGTCAC
Statistics
Matches: 138, Mismatches: 23, Indels: 17
0.78 0.13 0.10
Matches are distributed among these distances:
141 4 0.03
142 17 0.12
143 4 0.03
144 43 0.31
145 56 0.41
146 14 0.10
ACGTcount: A:0.41, C:0.05, G:0.09, T:0.45
Consensus pattern (143 bp):
AATTTTTGATTTTGAAAAATAAAAATATATTTTTTTTAAGTATTTTAAAGAAAAGTTTAAAATTT
TAAAACAAATGTTTTAATTTTTTTAACTACTTCAGTAAAAGCTTTAGACTTTAAAAAAAATAATA
TTTTTTTTAAGAC
Found at i:100399884 original size:27 final size:27
Alignment explanation
Indices: 100399852--100400274 Score: 372
Period size: 27 Copynumber: 15.6 Consensus size: 27
100399842 TTAGTTTACC
* *
100399852 AAATTACTAAAATGCCCTCAATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
*
100399879 AAATTACTAAAATACCC-CTGGTTTGTA
1 AAATTACTAAAATACCCTC-GATTTGTA
* * *
100399906 AAATTACCAAAATACCC-CTAGTTTGTG
1 AAATTACTAAAATACCCTCGA-TTTGTA
* *
100399933 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACTAAAATACCCTC-GATTTGTA
* * * *
100399960 AAATTATTGAAATACCCTCGACTTATA
1 AAATTACTAAAATACCCTCGATTTGTA
* ** *
100399987 AAATTACCAAAATACCCTTTATTTGTG
1 AAATTACTAAAATACCCTCGATTTGTA
* *
100400014 AAATTACTAAAATACCCTTGACTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* * *
100400041 AAAGTACCAAAATACCC-CTGATTTGTG
1 AAATTACTAAAATACCCTC-GATTTGTA
* *
100400068 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* * * **
100400095 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACTAAAATACCCTCGATTTGTA
* *
100400122 AAATTACTAAAATACCCTTGGTTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* *
100400149 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACTAAAATACCCTC-GATTTGTA
* ** *
100400176 AAATTACCAAAATA-CCTTTAGTTTGCA
1 AAATTACTAAAATACCCTCGA-TTTGTA
*
100400203 AAGTTACTAAAATACCCTCGATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* *
100400230 AAATTACTGAAATACCCTCGACTTGTAA
1 AAATTACTAAAATACCCTCGATTTGT-A
* *
100400258 AAATTACCAAAGTACCC
1 AAATTACTAAAATACCC
100400275 CTGATTTACA
Statistics
Matches: 320, Mismatches: 65, Indels: 21
0.79 0.16 0.05
Matches are distributed among these distances:
26 4 0.01
27 294 0.92
28 22 0.07
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCGATTTGTA
Found at i:100399918 original size:54 final size:54
Alignment explanation
Indices: 100399852--100400281 Score: 479
Period size: 54 Copynumber: 7.9 Consensus size: 54
100399842 TTAGTTTACC
* * * * * *
100399852 AAATTACTAAAATGCCCTCAATTTGTAAAATTACTAAAATACCCCTGGTTTGTA
1 AAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAATACCCCTGATTTGTG
* * * *
100399906 AAATTACCAAAATACCC-CTAGTTTGTGAAATTACCAAAATACCCCTGATTTGTG
1 AAATTACTAAAATACCCTCGA-CTTGTAAAATTACCAAAATACCCCTGATTTGTG
* * * * *
100399960 AAATTATTGAAATACCCTCGACTTATAAAATTACCAAAATACCCTTTATTTGTG
1 AAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAATACCCCTGATTTGTG
* *
100400014 AAATTACTAAAATACCCTTGACTTGTAAAAGTACCAAAATACCCCTGATTTGTG
1 AAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAATACCCCTGATTTGTG
* * * ***
100400068 AAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAATACCCCTGATTTGTG
* **
100400122 AAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGATTTGTG
1 AAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAATACCCCTGATTTGTG
* ** * * * * *
100400176 AAATTACCAAAATA-CCTTTAGTTTGCAAAGTTACTAAAATA-CCCTCGATTTGTA
1 AAATTACTAAAATACCCTCGA-CTTGTAAAATTACCAAAATACCCCT-GATTTGTG
* *
100400230 AAATTACTGAAATACCCTCGACTTGTAAAAATTACCAAAGTACCCCTGATTT
1 AAATTACTAAAATACCCTCGACTTGT-AAAATTACCAAAATACCCCTGATTT
100400282 ACAGAATTAC
Statistics
Matches: 313, Mismatches: 56, Indels: 13
0.82 0.15 0.03
Matches are distributed among these distances:
53 10 0.03
54 276 0.88
55 23 0.07
56 4 0.01
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (54 bp):
AAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAATACCCCTGATTTGTG
Found at i:100400343 original size:27 final size:27
Alignment explanation
Indices: 100400313--100400507 Score: 255
Period size: 27 Copynumber: 7.2 Consensus size: 27
100400303 CAATTTACAA
*
100400313 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
100400340 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
100400367 AATTGCTGAAATACCCATGTAGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
100400394 AATTACCGAAATACCCTTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
100400421 AATTACTGAAATACCCCTGTAGGATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
100400448 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * * *
100400475 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
100400502 AATTAC
1 AATTAC
100400508 CATTTTGCCC
Statistics
Matches: 145, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 145 1.00
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:100400746 original size:25 final size:25
Alignment explanation
Indices: 100400712--100400806 Score: 138
Period size: 25 Copynumber: 3.8 Consensus size: 25
100400702 AGGAAGTGCT
*
100400712 AAAAGGGCTTTGCCCCAGTTTACTG
1 AAAAGGGCTTTGCCCCAGTTTACTA
* *
100400737 AAAAGGGCTTTGCCCTAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTACTA
*
100400762 AAAAAGGCTTTGCCCCAGTTTA-TCA
1 AAAAGGGCTTTGCCCCAGTTTACT-A
100400787 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
100400807 ATTAAAAGAG
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
25 62 1.00
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACTA
Found at i:100400819 original size:24 final size:25
Alignment explanation
Indices: 100400712--100400819 Score: 125
Period size: 25 Copynumber: 4.4 Consensus size: 25
100400702 AGGAAGTGCT
*
100400712 AAAAG-GGCTTTGCCCCAGTTTACTG
1 AAAAGAGGCTTTGCCCCAGTTTA-TC
* *
100400737 AAAAG-GGCTTTGCCCTAGTTTACC
1 AAAAGAGGCTTTGCCCCAGTTTATC
*
100400761 AAAAAAGGCTTTGCCCCAGTTTATC
1 AAAAGAGGCTTTGCCCCAGTTTATC
*
100400786 AAAA-AGGGCTTTGCCCCAG-TTATT
1 AAAAGA-GGCTTTGCCCCAGTTTATC
100400810 AAAAGAGGCT
1 AAAAGAGGCT
100400820 AGGCCTCCAG
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
24 17 0.23
25 56 0.77
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (25 bp):
AAAAGAGGCTTTGCCCCAGTTTATC
Found at i:100400830 original size:50 final size:50
Alignment explanation
Indices: 100400723--100400831 Score: 123
Period size: 50 Copynumber: 2.2 Consensus size: 50
100400713 AAAGGGCTTT
* * **
100400723 GCCCCAGTTTA-CTGAAAAGGGCTTTGCCCTAGTTTACCAAAAAAGGCTTT
1 GCCCCAGTTTATC-AAAAAGGGCTTTGCCCCAGTTTACCAAAAAAGGCTAG
** *
100400773 GCCCCAGTTTATCAAAAAGGGCTTTGCCCCAG-TTATTAAAAGAGGCTAG
1 GCCCCAGTTTATCAAAAAGGGCTTTGCCCCAGTTTACCAAAAAAGGCTAG
100400822 GCCTCCAGTT
1 GCC-CCAGTT
100400832 ATATGATAAA
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
49 15 0.30
50 34 0.68
51 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.27
Consensus pattern (50 bp):
GCCCCAGTTTATCAAAAAGGGCTTTGCCCCAGTTTACCAAAAAAGGCTAG
Found at i:100408046 original size:21 final size:22
Alignment explanation
Indices: 100408016--100408057 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
100408006 TAGTAAAAGT
100408016 CATTTCTCTAACCA-TAAACATG
1 CATTTCTCT-ACCATTAAACATG
100408038 CATTT-TCTACCATTAAACAT
1 CATTTCTCTACCATTAAACAT
100408058 CAAAATACAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.21
21 10 0.53
22 5 0.26
ACGTcount: A:0.36, C:0.26, G:0.02, T:0.36
Consensus pattern (22 bp):
CATTTCTCTACCATTAAACATG
Found at i:100418656 original size:40 final size:40
Alignment explanation
Indices: 100418571--100418780 Score: 230
Period size: 40 Copynumber: 5.3 Consensus size: 40
100418561 ATTTGAATGA
*
100418571 TATCCGGGCTAAGTCCCGAAGGCATTTATG-TAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
*
100418610 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
* * *
100418650 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * *
100418690 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * * * * *
100418730 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
100418770 TATCC-GGCTAA
1 TATCCGGGCTAA
100418781 ATTCCGAAGA
Statistics
Matches: 155, Mismatches: 12, Indels: 8
0.89 0.07 0.05
Matches are distributed among these distances:
39 37 0.24
40 115 0.74
41 3 0.02
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
Found at i:100425936 original size:40 final size:40
Alignment explanation
Indices: 100425881--100426090 Score: 230
Period size: 40 Copynumber: 5.3 Consensus size: 40
100425871 ATTTGAATGA
*
100425881 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
*
100425921 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
* * *
100425961 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * *
100426001 TATCCGGGCTAA-ACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * * * * *
100426040 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
100426080 TATCC-GGCTAA
1 TATCCGGGCTAA
100426091 ATTCCGAAGA
Statistics
Matches: 154, Mismatches: 12, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
39 43 0.28
40 108 0.70
41 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
Found at i:100426098 original size:79 final size:80
Alignment explanation
Indices: 100425884--100426099 Score: 249
Period size: 79 Copynumber: 2.7 Consensus size: 80
100425874 TGAATGATAT
* * * * *
100425884 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAATCCCGAAGGCATTTA
* * * *
100425949 TGCTAGTGATTTTAT
66 TGCGAGTGACTATAC
* * * *
100425964 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAA-CCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAATCCCGAAGGCATTTA
100426028 TGCGAGTTG-CTATAC
66 TGCGAG-TGACTATAC
* * * *
100426043 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAAATTCCGAAG
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAATCCCGAAG
100426100 AAACTTGGGT
Statistics
Matches: 114, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
78 7 0.06
79 63 0.55
80 44 0.39
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAATCCCGAAGGCATTTA
TGCGAGTGACTATAC
Found at i:100430315 original size:49 final size:51
Alignment explanation
Indices: 100430243--100430370 Score: 167
Period size: 50 Copynumber: 2.6 Consensus size: 51
100430233 TAATGCTGAT
100430243 GCCATGTCCCAGACATGGTCTTACACTGAG-TATCGA-A-AT-CGACGCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTGAGCTATC-ACATATCCG-CGCCGAC
* * * *
100430292 GCCATGTCCCAAACATGGTCTTACACT-AGCTCTCACATATCCGTGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGAGCTATCACATATCCGCGCCGAC
100430342 GCCATGTCCCAGACATGGTCTTACACTGA
1 GCCATGTCCCAGACATGGTCTTACACTGA
100430371 CACATCTCGT
Statistics
Matches: 69, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
48 3 0.04
49 30 0.43
50 33 0.48
51 3 0.04
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (51 bp):
GCCATGTCCCAGACATGGTCTTACACTGAGCTATCACATATCCGCGCCGAC
Found at i:100430422 original size:46 final size:48
Alignment explanation
Indices: 100430240--100430549 Score: 215
Period size: 45 Copynumber: 6.6 Consensus size: 48
100430230 ATATAATGCT
* **
100430240 GATGCCATGTCCCAGACATGGTCTTACACTGAG-TAT-CGAAATCG-ACGCC
1 GATG-CATGTCCCAGACATGGTCTTACACTG-GCTCTAC-ATCTCGTA-GCC
* * * *
100430289 GACGCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATATCCGT-GCC
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCTCT-ACATCT-CGTAGCC
*
100430339 GATGCCATGTCCCAGACATGGTCTTACACT-G-AC-ACATCTCGTAGCC
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCGTAGCC
*
100430385 GATGCATGTCCCAGACAT-GTCTTACACTGGCT-TACATCTTG-AGGCC
1 GATGCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCGTA-GCC
* ** * * *
100430431 GATG-ATGTCCCGGACAT-GTCTTACACTACCTCT-CGTCTC-AATGTC
1 GATGCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCGTA-GCC
* * * *
100430476 AATGCCATGT-TCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCC
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCTCTACAT-CTCGTAGCC
100430523 GATGCATGTCCCAGACAT-GTCTTACAC
1 GATGCATGTCCCAGACATGGTCTTACAC
100430550 CAACACACAA
Statistics
Matches: 213, Mismatches: 30, Indels: 39
0.76 0.11 0.14
Matches are distributed among these distances:
44 10 0.05
45 53 0.25
46 47 0.22
47 32 0.15
48 3 0.01
49 31 0.15
50 34 0.16
51 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (48 bp):
GATGCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCGTAGCC
Found at i:100443051 original size:23 final size:23
Alignment explanation
Indices: 100443025--100443069 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
100443015 TAGGTATGTG
*
100443025 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
100443048 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
100443070 TTGAATTGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:100463066 original size:107 final size:105
Alignment explanation
Indices: 100462880--100463093 Score: 284
Period size: 107 Copynumber: 2.0 Consensus size: 105
100462870 TGTCAACTGC
* * * *
100462880 AGGCTAAAGTCCTCCACTCACAACACTACAGTCACCCTAGACAGAATGTGTCTAATACATTCTAC
1 AGGCTAAAGTCCTCCACTCACAACACCACAGTCACCCTAGACAAAATGTGTCAAATAAATTCTAC
* * *
100462945 TGTCAAGGGAAGAAAATTTGATGTAGGCGCAATACTTCACCA
66 TATCAAGGGAAG-AAA-TTAATGTAGGCACAATACTTCACCA
* * *
100462987 AGGCTAAAGTCCTCCACTCACAGCACCACAGTCCCCCTAGACAAAATGTGTCAAATAAATTCTAT
1 AGGCTAAAGTCCTCCACTCACAACACCACAGTCACCCTAGACAAAATGTGTCAAATAAATTCTAC
* * * *
100463052 TATTAAGGGCAGAAATTAATGTAGGCATAATACTTTACCA
66 TATCAAGGGAAGAAATTAATGTAGGCACAATACTTCACCA
100463092 AG
1 AG
100463094 AAATAGTTGA
Statistics
Matches: 93, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
105 23 0.25
106 3 0.03
107 67 0.72
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (105 bp):
AGGCTAAAGTCCTCCACTCACAACACCACAGTCACCCTAGACAAAATGTGTCAAATAAATTCTAC
TATCAAGGGAAGAAATTAATGTAGGCACAATACTTCACCA
Found at i:100463779 original size:21 final size:21
Alignment explanation
Indices: 100463754--100463807 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
100463744 GTTTTTGAGA
*
100463754 AGGAAGTTGCTGCTGCAGAAG
1 AGGAAGTTGCTGCTGAAGAAG
* *
100463775 AGGAAATTGTTGCTGAAGAAG
1 AGGAAGTTGCTGCTGAAGAAG
*
100463796 AAGAAGTTGCTG
1 AGGAAGTTGCTG
100463808 GAAATAAGAA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.33, C:0.09, G:0.35, T:0.22
Consensus pattern (21 bp):
AGGAAGTTGCTGCTGAAGAAG
Found at i:100485121 original size:37 final size:37
Alignment explanation
Indices: 100484942--100485123 Score: 292
Period size: 37 Copynumber: 4.9 Consensus size: 37
100484932 GCTCAGACGA
* * * * *
100484942 AATCTCCACATGAAGTTATCGGGTCTTACCCAGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* *
100484979 AATCTCCACACGTAGTTATCGGGTCTTACCCAGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
100485016 AATCTCCACACGTAGTCATTGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
100485053 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
100485090 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
100485124 ATATATTTCC
Statistics
Matches: 138, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 138 1.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:100485392 original size:47 final size:47
Alignment explanation
Indices: 100485330--100485665 Score: 492
Period size: 47 Copynumber: 7.1 Consensus size: 47
100485320 ACACGTTTCG
* * * **
100485330 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
100485377 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
100485424 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* *
100485471 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCATATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
100485518 CAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ***
100485565 CATTGGCCATTCAGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
*
100485616 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
100485663 CAT
1 CAT
100485666 AAAATCCTAA
Statistics
Matches: 263, Mismatches: 22, Indels: 8
0.90 0.08 0.03
Matches are distributed among these distances:
47 220 0.84
51 43 0.16
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:100485697 original size:145 final size:138
Alignment explanation
Indices: 100485406--100485681 Score: 369
Period size: 145 Copynumber: 2.0 Consensus size: 138
100485396 TCTCATATAT
* *
100485406 GCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 GCATGTTCACATTCATCACATTGGCCATTCAGCCTTATCACACATACACATGTTCACATTCATCA
* ** * *
100485471 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCATATCCATCACAGTGGCCATTCGGCCTT
66 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACAGT-GAAAAT--GCCTA
*
100485536 ATCACACATAC
128 ATCAAACATAC
* *
100485547 GCATGTTCACATTCATCACATTGGCCATTCAGCCTTATCACACATATATATACGGGTTCACATTC
1 GCATGTTCACATTCATCACATTGGCCATTCAGCCTTATCACACATACACAT----GTTCACATTC
100485612 ATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACA-T-AAAAT-CCT
62 ATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACAGTGAAAATGCCT
100485674 AAATCAAA
127 -AATCAAA
100485682 ATATAAATTT
Statistics
Matches: 120, Mismatches: 10, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
139 3 0.03
140 5 0.04
141 47 0.39
142 2 0.02
144 1 0.01
145 62 0.52
ACGTcount: A:0.29, C:0.30, G:0.12, T:0.29
Consensus pattern (138 bp):
GCATGTTCACATTCATCACATTGGCCATTCAGCCTTATCACACATACACATGTTCACATTCATCA
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACAGTGAAAATGCCTAATC
AAACATAC
Found at i:100494668 original size:25 final size:25
Alignment explanation
Indices: 100494634--100494683 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
100494624 ATCTAGTTTC
100494634 TTTTTATAATATCTATTTATTTCTA
1 TTTTTATAATATCTATTTATTTCTA
100494659 TTTTTATAATATCTATTTATTTCTA
1 TTTTTATAATATCTATTTATTTCTA
100494684 ATAAATATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (25 bp):
TTTTTATAATATCTATTTATTTCTA
Found at i:100494675 original size:15 final size:15
Alignment explanation
Indices: 100494634--100494676 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
100494624 ATCTAGTTTC
100494634 TTTTTATAATATCTA
1 TTTTTATAATATCTA
100494649 --TTTAT--T-TCTA
1 TTTTTATAATATCTA
100494659 TTTTTATAATATCTA
1 TTTTTATAATATCTA
100494674 TTT
1 TTT
100494677 ATTTCTAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 10
0.70 0.00 0.30
Matches are distributed among these distances:
10 4 0.17
11 1 0.04
12 5 0.22
13 5 0.22
14 1 0.04
15 7 0.30
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (15 bp):
TTTTTATAATATCTA
Found at i:100494690 original size:21 final size:23
Alignment explanation
Indices: 100494638--100494691 Score: 67
Period size: 25 Copynumber: 2.3 Consensus size: 23
100494628 AGTTTCTTTT
*
100494638 TATAATATCTATTTATTTCTATTTT
1 TATAATATCTATTTATTTCTA--TA
100494663 TATAATATCTATTTATTTCTA-A
1 TATAATATCTATTTATTTCTATA
100494685 TA-AATAT
1 TATAATAT
100494692 TTATATAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 5 0.18
22 2 0.07
25 21 0.75
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.57
Consensus pattern (23 bp):
TATAATATCTATTTATTTCTATA
Found at i:100495720 original size:14 final size:14
Alignment explanation
Indices: 100495701--100495728 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
100495691 TCAAGATAAA
100495701 GATAATATTGATCG
1 GATAATATTGATCG
100495715 GATAATATTGATCG
1 GATAATATTGATCG
100495729 AAGGTAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.36
Consensus pattern (14 bp):
GATAATATTGATCG
Found at i:100498544 original size:47 final size:47
Alignment explanation
Indices: 100498486--100498611 Score: 173
Period size: 47 Copynumber: 2.7 Consensus size: 47
100498476 AAATAATACC
* **
100498486 TTGATTTGGCTACGAGCCATGGTATAGTTACTCTGGGATAAGTTACT
1 TTGATTTGGCTACGAGCCATGGTATAGGTACTCCAGGATAAGTTACT
* **
100498533 TTGATTTGGCTACGGGTTATGGTATAGGTACTCCAGGATAAGTTACT
1 TTGATTTGGCTACGAGCCATGGTATAGGTACTCCAGGATAAGTTACT
*
100498580 TTGATTTGGCTAC-AGGCCATGGTATGGGTACT
1 TTGATTTGGCTACGA-GCCATGGTATAGGTACT
100498612 TATTGATTGT
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.22, C:0.14, G:0.28, T:0.36
Consensus pattern (47 bp):
TTGATTTGGCTACGAGCCATGGTATAGGTACTCCAGGATAAGTTACT
Found at i:100503748 original size:62 final size:62
Alignment explanation
Indices: 100503673--100503797 Score: 250
Period size: 62 Copynumber: 2.0 Consensus size: 62
100503663 GTTCGAATGA
100503673 ACTTAGTGATATTCCAACATAAACTATCAGTTAATAGCGTCTTGATGTTATGAGTAATAAGG
1 ACTTAGTGATATTCCAACATAAACTATCAGTTAATAGCGTCTTGATGTTATGAGTAATAAGG
100503735 ACTTAGTGATATTCCAACATAAACTATCAGTTAATAGCGTCTTGATGTTATGAGTAATAAGG
1 ACTTAGTGATATTCCAACATAAACTATCAGTTAATAGCGTCTTGATGTTATGAGTAATAAGG
100503797 A
1 A
100503798 TTAATGCATG
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.34
Consensus pattern (62 bp):
ACTTAGTGATATTCCAACATAAACTATCAGTTAATAGCGTCTTGATGTTATGAGTAATAAGG
Found at i:100506461 original size:29 final size:29
Alignment explanation
Indices: 100506414--100506484 Score: 115
Period size: 29 Copynumber: 2.4 Consensus size: 29
100506404 CTCTACTCAG
* *
100506414 CCACTACCCTCTATTGTTGCCTCTGGATCT
1 CCAC-ACCCTTTATTGTTGCCTCTAGATCT
100506444 CCACACCCTTTATTGTTGCCTCTAGATCT
1 CCACACCCTTTATTGTTGCCTCTAGATCT
100506473 CCACACCCTTTA
1 CCACACCCTTTA
100506485 GGGTTTCCTC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
29 35 0.90
30 4 0.10
ACGTcount: A:0.17, C:0.38, G:0.10, T:0.35
Consensus pattern (29 bp):
CCACACCCTTTATTGTTGCCTCTAGATCT
Found at i:100506494 original size:29 final size:29
Alignment explanation
Indices: 100506429--100506494 Score: 96
Period size: 29 Copynumber: 2.3 Consensus size: 29
100506419 ACCCTCTATT
* **
100506429 GTTGCCTCTGGATCTCCACACCCTTTATT
1 GTTGCCTCTAGATCTCCACACCCTTTAGG
100506458 GTTGCCTCTAGATCTCCACACCCTTTAGG
1 GTTGCCTCTAGATCTCCACACCCTTTAGG
*
100506487 GTTTCCTC
1 GTTGCCTC
100506495 CTTTAGCTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.14, C:0.35, G:0.15, T:0.36
Consensus pattern (29 bp):
GTTGCCTCTAGATCTCCACACCCTTTAGG
Found at i:100508243 original size:20 final size:20
Alignment explanation
Indices: 100508218--100508306 Score: 79
Period size: 20 Copynumber: 4.4 Consensus size: 20
100508208 ACTTTTATAG
*
100508218 GTTTGCACTTTGGTGCCTTT
1 GTTTGCACTTTGGTGCCTCT
*
100508238 GTTTGCACCTTTGATGCCTCT
1 GTTTGCA-CTTTGGTGCCTCT
* ** * *
100508259 ATTCACACTTTAGTGTCTCT
1 GTTTGCACTTTGGTGCCTCT
* *
100508279 GTTTGCACTCTCGTGCCTCT
1 GTTTGCACTTTGGTGCCTCT
*
100508299 GGTTGCAC
1 GTTTGCAC
100508307 AATCTTGACT
Statistics
Matches: 53, Mismatches: 15, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
20 38 0.72
21 15 0.28
ACGTcount: A:0.10, C:0.27, G:0.20, T:0.43
Consensus pattern (20 bp):
GTTTGCACTTTGGTGCCTCT
Found at i:100508255 original size:21 final size:20
Alignment explanation
Indices: 100508218--100508256 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
100508208 ACTTTTATAG
*
100508218 GTTTGCACTTTGGTGCCTTT
1 GTTTGCACTTTGATGCCTTT
100508238 GTTTGCACCTTTGATGCCT
1 GTTTGCA-CTTTGATGCCT
100508257 CTATTCACAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.08, C:0.23, G:0.23, T:0.46
Consensus pattern (20 bp):
GTTTGCACTTTGATGCCTTT
Found at i:100508324 original size:40 final size:40
Alignment explanation
Indices: 100508275--100508386 Score: 109
Period size: 40 Copynumber: 2.8 Consensus size: 40
100508265 ACTTTAGTGT
* *
100508275 CTCTGTTTGCACTCTCGTGCCTCTGGTTGCACAATCT-TGA
1 CTCTATTTGCACTCTAGTGCCTCTGGTTGCACAAT-TGTGA
* * * * *
100508315 CTCTATTTGCACTCTGGTACCTTTAGTTGCACAATTGTGC
1 CTCTATTTGCACTCTAGTGCCTCTGGTTGCACAATTGTGA
* * * *
100508355 CTTTATTTGCACTATAGTGCCCCTGTTTGCAC
1 CTCTATTTGCACTCTAGTGCCTCTGGTTGCAC
100508387 TCCACTACCT
Statistics
Matches: 57, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.02
40 56 0.98
ACGTcount: A:0.15, C:0.28, G:0.18, T:0.39
Consensus pattern (40 bp):
CTCTATTTGCACTCTAGTGCCTCTGGTTGCACAATTGTGA
Done.