Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 301 of 349
Found at i:100778233 original size:16 final size:18
Alignment explanation
Indices: 100778208--100778243 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
100778198 CTTAAATTTA
100778208 TTTATCAAAT-AAATAAT
1 TTTATCAAATAAAATAAT
100778225 TTTAT-AAATAAAATAAT
1 TTTATCAAATAAAATAAT
100778242 TT
1 TT
100778244 CCTTAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (18 bp):
TTTATCAAATAAAATAAT
Found at i:100780836 original size:15 final size:16
Alignment explanation
Indices: 100780811--100780844 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
100780801 AAGATGAAGC
100780811 GTTTGATAAATTTAAA
1 GTTTGATAAATTTAAA
*
100780827 GTTT-ATAAATTTGAA
1 GTTTGATAAATTTAAA
100780842 GTT
1 GTT
100780845 GAACTTCAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.47
Consensus pattern (16 bp):
GTTTGATAAATTTAAA
Found at i:100782634 original size:22 final size:22
Alignment explanation
Indices: 100782606--100782650 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
100782596 AATAGAGTAC
100782606 TTAGTTACTTAAAGAAAACTAT
1 TTAGTTACTTAAAGAAAACTAT
100782628 TTAGTTACTTAAAGAAAACTAT
1 TTAGTTACTTAAAGAAAACTAT
100782650 T
1 T
100782651 AACTATGGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.38
Consensus pattern (22 bp):
TTAGTTACTTAAAGAAAACTAT
Found at i:100783857 original size:20 final size:20
Alignment explanation
Indices: 100783823--100783864 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
100783813 AACTATTTAA
** *
100783823 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
100783843 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
100783863 AT
1 AT
100783865 GTATTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:100785931 original size:21 final size:21
Alignment explanation
Indices: 100785907--100785950 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
100785897 TCTCTAATCT
* *
100785907 AATTT-ATTTATTTCCTTTTAG
1 AATTTGATTT-TTTACTTTGAG
100785928 AATTTGATTTTTTACTTTGAG
1 AATTTGATTTTTTACTTTGAG
100785949 AA
1 AA
100785951 GTTAAGTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.27, C:0.07, G:0.09, T:0.57
Consensus pattern (21 bp):
AATTTGATTTTTTACTTTGAG
Found at i:100787642 original size:68 final size:69
Alignment explanation
Indices: 100787522--100787807 Score: 281
Period size: 68 Copynumber: 4.1 Consensus size: 69
100787512 CCTTCTATGT
* * * * *
100787522 CCAACACAGTTAGCAAGAACGAAGCTCCCAACTGTCATATTAAGGCTCGCAGGTGAAGAGCCGCA
1 CCAACAAAGTTAGCGAGAGCAAAGCTCCCAACTGTCATATTTAGGCTCGCAGGTGAAGAGCCGCA
100787587 GCCC
66 GCCC
* * * *
100787591 CCAA-AAAGTTAGCGAGAGTAAAGCTCCCAACTGTTATATTTAGGCTTGCAGGTGAAGAGCCGTA
1 CCAACAAAGTTAGCGAGAGCAAAGCTCCCAACTGTCATATTTAGGCTCGCAGGTGAAGAGCCGCA
* *
100787655 GTCT
66 GCCC
* *
100787659 CCAACATAGTTAGCGAGAGCAAAGCTCCTAACTGTCATA-TTAGGCTCGCAGGTGAAGAGTCGCA
1 CCAACAAAGTTAGCGAGAGCAAAGCTCCCAACTGTCATATTTAGGCTCGCAGGTGAAGAG-C-C-
*
100787723 GCCTCAGCCT
63 G---CAGCCC
* * * * * * *
100787733 CCAACACAA-TTAGCGAGAACAAAGCTCCCAGCTGTCATATTAAAGCTTGTAGGTGAAGAGCTGC
1 CCAACA-AAGTTAGCGAGAGCAAAGCTCCCAACTGTCATATTTAGGCTCGCAGGTGAAGAGCCGC
* *
100787797 AGTCT
65 AGCCC
100787802 CCAACA
1 CCAACA
100787808 CAATTAACAA
Statistics
Matches: 180, Mismatches: 28, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
68 76 0.42
69 46 0.26
70 1 0.01
71 1 0.01
72 1 0.01
74 38 0.21
75 17 0.09
ACGTcount: A:0.31, C:0.26, G:0.23, T:0.20
Consensus pattern (69 bp):
CCAACAAAGTTAGCGAGAGCAAAGCTCCCAACTGTCATATTTAGGCTCGCAGGTGAAGAGCCGCA
GCCC
Found at i:100787781 original size:143 final size:137
Alignment explanation
Indices: 100787521--100787858 Score: 360
Period size: 143 Copynumber: 2.4 Consensus size: 137
100787511 ACCTTCTATG
*
100787521 TCCAACACAGTTAGCAAGAACGAAGCTCCCAACTGTCATATTAAGGCTCGCAGGTGAAGAGCCGC
1 TCCAACACAGTTAGCAAGAACAAAGCTCCCAACTGTCATATTAAGGCTCGCAGGTGAAGAGCCGC
** * * *
100787586 AGCCCCCAAAAAGTTAGCGAGAGTAAAGCTCCCAACTGTTATATTTAGGCTTGCAGGTGAAGAGC
66 AGCCCCCAAAAAGTTAGCGAGAACAAAGCTCCCAACTGTCATATTAAAGCTTGCAGGTGAAGAGC
*
100787651 CGTAGTC
131 CGCAGTC
* * * *
100787658 TCCAACATAGTTAGCGAGAGCAAAGCTCCTAACTGTCATATT-AGGCTCGCAGGTGAAGAGTCGC
1 TCCAACACAGTTAGCAAGAACAAAGCTCCCAACTGTCATATTAAGGCTCGCAGGTGAAGAG-C-C
* * *
100787722 AGCCTCAGCCTCCAACACAA-TTAGCGAGAACAAAGCTCCCAGCTGTCATATTAAAGCTTGTAGG
64 -G---CAGCCCCCAA-A-AAGTTAGCGAGAACAAAGCTCCCAACTGTCATATTAAAGCTTGCAGG
*
100787786 TGAAGAGCTGCAGTC
123 TGAAGAGCCGCAGTC
* * ** * * *
100787801 TCCAACACAATTAACAACTTA-AAAGCTCCCAGCTGTTATA-TAGGGGCTCGCAGGTGAA
1 TCCAACACAGTTAGCAA-GAACAAAGCTCCCAACTGTCATATTA-AGGCTCGCAGGTGAA
100787859 AAATCGTAGC
Statistics
Matches: 164, Mismatches: 26, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
136 18 0.11
137 38 0.23
138 1 0.01
139 1 0.01
142 10 0.06
143 80 0.49
144 16 0.10
ACGTcount: A:0.32, C:0.25, G:0.23, T:0.21
Consensus pattern (137 bp):
TCCAACACAGTTAGCAAGAACAAAGCTCCCAACTGTCATATTAAGGCTCGCAGGTGAAGAGCCGC
AGCCCCCAAAAAGTTAGCGAGAACAAAGCTCCCAACTGTCATATTAAAGCTTGCAGGTGAAGAGC
CGCAGTC
Found at i:100787885 original size:211 final size:213
Alignment explanation
Indices: 100787521--100787928 Score: 461
Period size: 211 Copynumber: 1.9 Consensus size: 213
100787511 ACCTTCTATG
* * *
100787521 TCCAACACAGTTAGCAAGAACGAAGCTCCCAACTGTCATATTAAGGCTCGCAGGTGAAGAGCCGC
1 TCCAACACAATTAGCAAGAACAAAGCTCCCAACTGTCATATTAAAGCTCGCAGGTGAAGAGCCGC
* ** * * *
100787586 AGCCCCCAAAAAGTTAGCGAGAGTAAAGCTCCCAACTGTTATATTTAGGCTTGCAGGTGAAGAGC
66 AGCCCCCAAAAAGTTAACGAGAGTAAAGCTCCCAACTGTTATATAGAGGCTCGCAGGTGAAAAAC
* * * * *
100787651 CGTAGTCTCCAACATAGTTAGCGAGAG-CAAAGCTCCTAACTGTCATATTA-GGCTCGCAGGTGA
131 CGTAGTCTCCAACACAATTAGCGAGAGTAAAAGCTCCTAACTGTCATACTAGGGCTCGCAAGTGA
100787714 AGAGTCGCAGCCTCAGCC
196 AGAGTCGCAGCCTCAGCC
* * * * *
100787732 TCCAACACAATTAGCGAGAACAAAGCTCCCAGCTGTCATATTAAAGCTTGTAGGTGAAGAGCTGC
1 TCCAACACAATTAGCAAGAACAAAGCTCCCAACTGTCATATTAAAGCTCGCAGGTGAAGAGCCGC
* * * * *
100787797 AGTCTCCAACACAA-TTAAC-A-ACTTAAAAGCTCCCAGCTGTTATATAGGGGCTCGCAGGTGAA
66 AGCCCCCAA-A-AAGTTAACGAGA-GT-AAAGCTCCCAACTGTTATATAGAGGCTCGCAGGTGAA
* * **
100787859 AAATCGTAG-C-CATAACACAATTAGCGAGAGTTAAAAGCTCCTAGTTGTCATACTAGGGCTCGC
127 AAACCGTAGTCTC-CAACACAATTAGCGAGAG-TAAAAGCTCCTAACTGTCATACTAGGGCTCGC
100787922 AAGTGAA
190 AAGTGAA
100787929 AAACTGCAGC
Statistics
Matches: 161, Mismatches: 28, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
210 2 0.01
211 82 0.51
212 43 0.27
213 21 0.13
214 13 0.08
ACGTcount: A:0.32, C:0.24, G:0.23, T:0.21
Consensus pattern (213 bp):
TCCAACACAATTAGCAAGAACAAAGCTCCCAACTGTCATATTAAAGCTCGCAGGTGAAGAGCCGC
AGCCCCCAAAAAGTTAACGAGAGTAAAGCTCCCAACTGTTATATAGAGGCTCGCAGGTGAAAAAC
CGTAGTCTCCAACACAATTAGCGAGAGTAAAAGCTCCTAACTGTCATACTAGGGCTCGCAAGTGA
AGAGTCGCAGCCTCAGCC
Found at i:100789754 original size:18 final size:18
Alignment explanation
Indices: 100789731--100789766 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
100789721 AATAAAATGC
100789731 GTATAATAAA-ATTAAAAT
1 GTATAA-AAATATTAAAAT
100789749 GTATAAAAATATTAAAAT
1 GTATAAAAATATTAAAAT
100789767 AAAATTTTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.18
18 14 0.82
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (18 bp):
GTATAAAAATATTAAAAT
Found at i:100790586 original size:26 final size:25
Alignment explanation
Indices: 100790550--100790613 Score: 87
Period size: 25 Copynumber: 2.6 Consensus size: 25
100790540 TTTGTTAGAA
*
100790550 TTTTT-TTA-AAAATTCACTTAAAT
1 TTTTTATTATAAAAGTCACTTAAAT
*
100790573 TTTTTATTATAAAAGTGACTTAAAT
1 TTTTTATTATAAAAGTCACTTAAAT
*
100790598 TTTTTATTATCAAAGT
1 TTTTTATTATAAAAGT
100790614 GATCAATAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
23 5 0.14
24 3 0.08
25 28 0.78
ACGTcount: A:0.38, C:0.06, G:0.05, T:0.52
Consensus pattern (25 bp):
TTTTTATTATAAAAGTCACTTAAAT
Found at i:100790593 original size:25 final size:25
Alignment explanation
Indices: 100790565--100790615 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
100790555 TTAAAAATTC
100790565 ACTTAAATTTTTTATTATAAAAGTG
1 ACTTAAATTTTTTATTATAAAAGTG
*
100790590 ACTTAAATTTTTTATTATCAAAGTG
1 ACTTAAATTTTTTATTATAAAAGTG
100790615 A
1 A
100790616 TCAATAATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.39, C:0.06, G:0.08, T:0.47
Consensus pattern (25 bp):
ACTTAAATTTTTTATTATAAAAGTG
Found at i:100793290 original size:16 final size:17
Alignment explanation
Indices: 100793269--100793303 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
100793259 AATTAATTTA
100793269 AATTAATTAA-TTTCTC
1 AATTAATTAATTTTCTC
100793285 AATTAATTAATTTTCTC
1 AATTAATTAATTTTCTC
100793302 AA
1 AA
100793304 CCTAATTCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 10 0.56
17 8 0.44
ACGTcount: A:0.40, C:0.11, G:0.00, T:0.49
Consensus pattern (17 bp):
AATTAATTAATTTTCTC
Found at i:100796643 original size:23 final size:23
Alignment explanation
Indices: 100796617--100796693 Score: 111
Period size: 23 Copynumber: 3.3 Consensus size: 23
100796607 GGTCCATTTA
100796617 CACATTAATATTTAAGCATAAAT
1 CACATTAATATTTAAGCATAAAT
*
100796640 CACATTAATATTTAAGCATAAAA
1 CACATTAATATTTAAGCATAAAT
*
100796663 CACATTAA-ATTTTAAACATAAAT
1 CACATTAATA-TTTAAGCATAAAT
*
100796686 CATATTAA
1 CACATTAA
100796694 GTTCTAACAC
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
22 1 0.02
23 48 0.98
ACGTcount: A:0.51, C:0.13, G:0.03, T:0.34
Consensus pattern (23 bp):
CACATTAATATTTAAGCATAAAT
Found at i:100797760 original size:14 final size:14
Alignment explanation
Indices: 100797741--100797768 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
100797731 TCGTTAATGA
100797741 AACTTTAATGTAAG
1 AACTTTAATGTAAG
100797755 AACTTTAATGTAAG
1 AACTTTAATGTAAG
100797769 TTTAGAAACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.14, T:0.36
Consensus pattern (14 bp):
AACTTTAATGTAAG
Found at i:100810220 original size:20 final size:21
Alignment explanation
Indices: 100810190--100810232 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 21
100810180 AGATGGTTTC
*
100810190 TTTTATCTTTTATTTACTTAA
1 TTTTATCTTTTATTTACTAAA
100810211 TTTT-TCTTTTATTTACTAAA
1 TTTTATCTTTTATTTACTAAA
100810231 TT
1 TT
100810233 ATTGCTTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.23, C:0.09, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTTATCTTTTATTTACTAAA
Found at i:100810241 original size:20 final size:20
Alignment explanation
Indices: 100810196--100810240 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
100810186 TTTCTTTTAT
* *
100810196 CTTTTATTTACTTAATTTTT
1 CTTTTATTTACTAAATTTTG
100810216 CTTTTATTTACTAAATTATTG
1 CTTTTATTTACTAAATT-TTG
100810237 CTTT
1 CTTT
100810241 AACCTTACTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 16 0.73
21 6 0.27
ACGTcount: A:0.22, C:0.11, G:0.02, T:0.64
Consensus pattern (20 bp):
CTTTTATTTACTAAATTTTG
Found at i:100811838 original size:12 final size:13
Alignment explanation
Indices: 100811821--100811858 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
100811811 ATCCTGGAAT
100811821 ATTAA-GACAAGA
1 ATTAAGGACAAGA
*
100811833 ATTAAGGACACATA
1 ATTAAGGACA-AGA
100811847 ATTAAGGACAAG
1 ATTAAGGACAAG
100811859 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 5 0.23
13 5 0.23
14 12 0.55
ACGTcount: A:0.53, C:0.11, G:0.18, T:0.18
Consensus pattern (13 bp):
ATTAAGGACAAGA
Found at i:100813041 original size:19 final size:20
Alignment explanation
Indices: 100813004--100813041 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
100812994 CTTTCTTTTA
100813004 TCTTTTATTTACTTAAATTT
1 TCTTTTATTTACTTAAATTT
100813024 TCTTTTATTTAC-TAAATT
1 TCTTTTATTTACTTAAATT
100813042 ACTACTTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.26, C:0.11, G:0.00, T:0.63
Consensus pattern (20 bp):
TCTTTTATTTACTTAAATTT
Found at i:100822013 original size:45 final size:45
Alignment explanation
Indices: 100821949--100822039 Score: 139
Period size: 45 Copynumber: 2.0 Consensus size: 45
100821939 ACAAAACATG
100821949 TGTCACATACATCATGAACTCAGACCACAACT-AGATGAGCTCAGA
1 TGTCACATACATCATGAACTCAGACCACAACTCA-ATGAGCTCAGA
* * *
100821994 TGTCACATATATCATGAACTCAGACCATAACTCAATGAGTTCAGA
1 TGTCACATACATCATGAACTCAGACCACAACTCAATGAGCTCAGA
100822039 T
1 T
100822040 CACATTGTTC
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
45 41 0.98
46 1 0.02
ACGTcount: A:0.37, C:0.24, G:0.14, T:0.24
Consensus pattern (45 bp):
TGTCACATACATCATGAACTCAGACCACAACTCAATGAGCTCAGA
Found at i:100822015 original size:24 final size:24
Alignment explanation
Indices: 100821949--100822017 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 24
100821939 ACAAAACATG
*
100821949 TGTCACATACATCATGAACTCAGA
1 TGTCACATATATCATGAACTCAGA
* * *
100821973 --CCACA-ACTA-GATGAGCTCAGA
1 TGTCACATA-TATCATGAACTCAGA
100821994 TGTCACATATATCATGAACTCAGA
1 TGTCACATATATCATGAACTCAGA
100822018 CCATAACTCA
Statistics
Matches: 33, Mismatches: 7, Indels: 10
0.66 0.14 0.20
Matches are distributed among these distances:
21 11 0.33
22 5 0.15
23 6 0.18
24 11 0.33
ACGTcount: A:0.38, C:0.25, G:0.14, T:0.23
Consensus pattern (24 bp):
TGTCACATATATCATGAACTCAGA
Found at i:100846175 original size:24 final size:24
Alignment explanation
Indices: 100846143--100846193 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
100846133 CATGTTTAAG
*
100846143 TTCATCTATTAATATAAGTTGTCT
1 TTCATCTATTAATATAAGTCGTCT
100846167 TTCATCTATTAATATAAGTCGTCT
1 TTCATCTATTAATATAAGTCGTCT
100846191 TTC
1 TTC
100846194 CATGTTACGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.27, C:0.16, G:0.08, T:0.49
Consensus pattern (24 bp):
TTCATCTATTAATATAAGTCGTCT
Found at i:100851040 original size:13 final size:13
Alignment explanation
Indices: 100851022--100851049 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
100851012 GTGGCTGCAT
100851022 TAGTGCTTGTAAC
1 TAGTGCTTGTAAC
100851035 TAGTGCTTGTAAC
1 TAGTGCTTGTAAC
100851048 TA
1 TA
100851050 TGGTCATAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.25, C:0.14, G:0.21, T:0.39
Consensus pattern (13 bp):
TAGTGCTTGTAAC
Found at i:100860393 original size:16 final size:16
Alignment explanation
Indices: 100860372--100860403 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
100860362 AGAATGGTTT
100860372 GGTTTGATAAATTCTA
1 GGTTTGATAAATTCTA
100860388 GGTTTGATAAATTCTA
1 GGTTTGATAAATTCTA
100860404 CTTTCATACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (16 bp):
GGTTTGATAAATTCTA
Found at i:100866896 original size:40 final size:40
Alignment explanation
Indices: 100866841--100867108 Score: 464
Period size: 40 Copynumber: 6.7 Consensus size: 40
100866831 GAGCATTGGA
100866841 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
100866881 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
100866921 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
100866961 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
100867001 ATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
100867041 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
100867081 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
100867109 ATGTGTTTGC
Statistics
Matches: 215, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 215 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:100868857 original size:13 final size:13
Alignment explanation
Indices: 100868839--100868867 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
100868829 ACCAGTAAGC
100868839 TGGTACTTAACAA
1 TGGTACTTAACAA
100868852 TGGTACTTAACAA
1 TGGTACTTAACAA
100868865 TGG
1 TGG
100868868 CGTTGGTACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (13 bp):
TGGTACTTAACAA
Found at i:100871213 original size:39 final size:40
Alignment explanation
Indices: 100871168--100871335 Score: 97
Period size: 40 Copynumber: 4.2 Consensus size: 40
100871158 CGGGGTTTAG
* * *
100871168 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
100871207 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * * **
100871247 CCGGATATAGTCGCTAGCACAAATGCCCTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
100871287 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
100871328 CCGGATAT
1 CCGGATAT
100871336 CATTCGAGTA
Statistics
Matches: 107, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
39 18 0.17
40 60 0.56
41 26 0.24
42 3 0.03
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:100871326 original size:41 final size:40
Alignment explanation
Indices: 100871191--100871335 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
100871181 CTCGCACAAG
* * * * *
100871191 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
100871231 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * * *
100871271 GCCCTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
100871312 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
100871336 CATTCGAGTA
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 3 0.03
40 58 0.64
41 26 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:100872568 original size:38 final size:38
Alignment explanation
Indices: 100872526--100872601 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
100872516 CAAGAACTCC
* *
100872526 TTCCTCCTTCCTTAGAATTTTTGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAAAATTTTCGGCCAAAAGAAATGAA
100872564 TTCCTCCTTCCTTAAAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAAAATTTTCGGCCAAAAGAAATGAA
100872602 AAAAGATGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (38 bp):
TTCCTCCTTCCTTAAAATTTTCGGCCAAAAGAAATGAA
Found at i:100878264 original size:26 final size:26
Alignment explanation
Indices: 100878203--100878265 Score: 108
Period size: 26 Copynumber: 2.4 Consensus size: 26
100878193 GTATCTGACC
*
100878203 ACTCAATCAAAAGACCATTTCCCGAA
1 ACTCAATCACAAGACCATTTCCCGAA
*
100878229 ACTCAATCACAAGACCATTTCCCGGA
1 ACTCAATCACAAGACCATTTCCCGAA
100878255 ACTCAATCACA
1 ACTCAATCACA
100878266 TGTATTGCAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.40, C:0.33, G:0.08, T:0.19
Consensus pattern (26 bp):
ACTCAATCACAAGACCATTTCCCGAA
Found at i:100878318 original size:43 final size:43
Alignment explanation
Indices: 100878270--100878355 Score: 118
Period size: 43 Copynumber: 2.0 Consensus size: 43
100878260 ATCACATGTA
**
100878270 TTGCATCCATTATGAACTCAGACCACTCAACAAGCTCGGATGC
1 TTGCATCCACAATGAACTCAGACCACTCAACAAGCTCGGATGC
* * * *
100878313 TTGCATCCACAATGAACTCGGACCACTTAACGAGTTCGGATGC
1 TTGCATCCACAATGAACTCAGACCACTCAACAAGCTCGGATGC
100878356 CACATATATC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (43 bp):
TTGCATCCACAATGAACTCAGACCACTCAACAAGCTCGGATGC
Found at i:100878643 original size:14 final size:16
Alignment explanation
Indices: 100878611--100878649 Score: 55
Period size: 14 Copynumber: 2.6 Consensus size: 16
100878601 ATTTACATAA
*
100878611 CATATATCACCTATTT
1 CATATATCACCTATGT
100878627 CATATATCA-CT-TGT
1 CATATATCACCTATGT
100878641 CATATATCA
1 CATATATCA
100878650 TCATTTCCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.50
15 2 0.09
16 9 0.41
ACGTcount: A:0.33, C:0.23, G:0.03, T:0.41
Consensus pattern (16 bp):
CATATATCACCTATGT
Found at i:100881239 original size:8 final size:8
Alignment explanation
Indices: 100881226--100881253 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
100881216 AAGAAAAATA
100881226 GACTAAAC
1 GACTAAAC
100881234 GACTAAAC
1 GACTAAAC
100881242 GACTAAAC
1 GACTAAAC
100881250 GACT
1 GACT
100881254 TATTTCATCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.46, C:0.25, G:0.14, T:0.14
Consensus pattern (8 bp):
GACTAAAC
Found at i:100881434 original size:40 final size:40
Alignment explanation
Indices: 100881379--100881485 Score: 133
Period size: 40 Copynumber: 2.6 Consensus size: 40
100881369 ACGACAATTT
* *
100881379 GGCTAAGTGTGGCACTTAGTGTGCGATTCAAGATAGCTTC
1 GGCTAAGTATGGCACTTAGTGTGCGATTCAAGATAACTTC
**
100881419 GGCTAAGTATGGCACTTAGTGTGCGATTTGAGATAACTTC
1 GGCTAAGTATGGCACTTAGTGTGCGATTCAAGATAACTTC
* * **
100881459 GTCTATGTATTAACACTTAGTGTGCGA
1 GGCTAAGTA-TGGCACTTAGTGTGCGA
100881486 GAATTTGAGT
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
40 43 0.74
41 15 0.26
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (40 bp):
GGCTAAGTATGGCACTTAGTGTGCGATTCAAGATAACTTC
Found at i:100884207 original size:30 final size:30
Alignment explanation
Indices: 100884172--100884229 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
100884162 CATGACCATG
100884172 ACACACGGGCGTGTAG-TCTACCCGTGTGTC
1 ACACACGGGCGTGTAGATC-ACCCGTGTGTC
*
100884202 ACACACGGGCGTGTGGATCACCCGTGTG
1 ACACACGGGCGTGTAGATCACCCGTGTG
100884230 GAAGTGCCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 24 0.92
31 2 0.08
ACGTcount: A:0.17, C:0.29, G:0.33, T:0.21
Consensus pattern (30 bp):
ACACACGGGCGTGTAGATCACCCGTGTGTC
Found at i:100903711 original size:85 final size:85
Alignment explanation
Indices: 100903612--100903781 Score: 304
Period size: 85 Copynumber: 2.0 Consensus size: 85
100903602 GTTTTTTTCA
100903612 AAAAAATGCAGCTGCTAGACCTAGGTTTCTTTTCGTTTTCTTGGTTAATGTTGGTAACACTCTCT
1 AAAAAATGCAGCTGCTAGACCTAGGTTTCTTTTCGTTTTCTTGGTTAATGTTGGTAACACTCTCT
*
100903677 CACCTTAGGGTTTTTGTGAT
66 CACCTTAGGGTTTTTATGAT
** *
100903697 AAAAAATGTGGCTGCTAGACCTAGGTTTTTTTTCGTTTTCTTGGTTAATGTTGGTAACACTCTCT
1 AAAAAATGCAGCTGCTAGACCTAGGTTTCTTTTCGTTTTCTTGGTTAATGTTGGTAACACTCTCT
100903762 CACCTTAGGGTTTTTATGAT
66 CACCTTAGGGTTTTTATGAT
100903782 TCCCTTTTAT
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
85 81 1.00
ACGTcount: A:0.21, C:0.16, G:0.20, T:0.42
Consensus pattern (85 bp):
AAAAAATGCAGCTGCTAGACCTAGGTTTCTTTTCGTTTTCTTGGTTAATGTTGGTAACACTCTCT
CACCTTAGGGTTTTTATGAT
Found at i:100913501 original size:21 final size:21
Alignment explanation
Indices: 100913475--100913515 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
100913465 ATCTGCTCAA
* *
100913475 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
100913496 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
100913516 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:100917553 original size:25 final size:25
Alignment explanation
Indices: 100917525--100917575 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
100917515 ATTACTCAGG
100917525 TATACCAGTAATAATCCATTAACTT
1 TATACCAGTAATAATCCATTAACTT
100917550 TATACCAGTAATAATCCATTAACTT
1 TATACCAGTAATAATCCATTAACTT
100917575 T
1 T
100917576 GTTCAGAGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.39, C:0.20, G:0.04, T:0.37
Consensus pattern (25 bp):
TATACCAGTAATAATCCATTAACTT
Found at i:100918935 original size:43 final size:43
Alignment explanation
Indices: 100918888--100919019 Score: 151
Period size: 43 Copynumber: 3.1 Consensus size: 43
100918878 CGTTTATAAA
* *
100918888 AAACGAAGTTAAAGAA-CATGACCTTTAGCGGCGCTTTTCTTAC
1 AAACGAAGTTAAA-AATCATGACTTTTAGCGTCGCTTTTCTTAC
** *
100918931 AAACGTTGCTAAAAATCATGACTTTTAGCGTCGCTCTTT-TTAC
1 AAACGAAGTTAAAAATCATGACTTTTAGCGTCGCT-TTTCTTAC
* ** *
100918974 AAATGCCGTTAAAAATCATGATTTTTAGCGTCGCTTTTCTTAC
1 AAACGAAGTTAAAAATCATGACTTTTAGCGTCGCTTTTCTTAC
100919017 AAA
1 AAA
100919020 TGCCGCTAAA
Statistics
Matches: 76, Mismatches: 10, Indels: 6
0.83 0.11 0.07
Matches are distributed among these distances:
42 5 0.07
43 68 0.89
44 3 0.04
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (43 bp):
AAACGAAGTTAAAAATCATGACTTTTAGCGTCGCTTTTCTTAC
Found at i:100919020 original size:43 final size:43
Alignment explanation
Indices: 100918904--100919043 Score: 176
Period size: 43 Copynumber: 3.3 Consensus size: 43
100918894 AGTTAAAGAA
* * * **
100918904 CATGACCTTTAGCGGCGCTTTTCTTACAAACGTTGCTAAAAAT
1 CATGACTTTTAGCGTCGCTTTTCTTACAAATGCCGCTAAAAAT
*
100918947 CATGACTTTTAGCGTCGCTCTTT-TTACAAATGCCGTTAAAAAT
1 CATGACTTTTAGCGTCGCT-TTTCTTACAAATGCCGCTAAAAAT
*
100918990 CATGATTTTTAGCGTCGCTTTTCTTACAAATGCCGCTAAAGAAT
1 CATGACTTTTAGCGTCGCTTTTCTTACAAATGCCGCTAAA-AAT
*
100919034 -AAGACTTTTA
1 CATGACTTTTA
100919044 AAAAATATTT
Statistics
Matches: 84, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
42 3 0.04
43 75 0.89
44 6 0.07
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.36
Consensus pattern (43 bp):
CATGACTTTTAGCGTCGCTTTTCTTACAAATGCCGCTAAAAAT
Found at i:100924220 original size:46 final size:46
Alignment explanation
Indices: 100923769--100924219 Score: 654
Period size: 46 Copynumber: 9.8 Consensus size: 46
100923759 TGATGTTATA
* * * * *
100923769 GTATCTTTCAACTATGGTTTTACTCGTTTTC-TATCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACAC-ATTTCATATCACGTTGCCATG
* ** * *
100923815 GTATCTTTTAACCATGGTCTTATTCATTTTC-TCCTCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACA-TTTCAT-ATCACGTTGCCATG
**
100923862 GTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
* * *
100923908 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
** *
100923954 GTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGTCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
100924000 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
100924046 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
* *
100924092 GTATCTTTCAACCATGATCTTACACATTTCATATCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
* *
100924138 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGTCATG
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
*
100924184 GTATCTTTCAACCATGGTCTTACACATTCCATATCA
1 GTATCTTTCAACCATGGTCTTACACATTTCATATCA
100924220 GAGAGCACAC
Statistics
Matches: 376, Mismatches: 26, Indels: 6
0.92 0.06 0.01
Matches are distributed among these distances:
46 338 0.90
47 38 0.10
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.41
Consensus pattern (46 bp):
GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
Found at i:100925501 original size:321 final size:321
Alignment explanation
Indices: 100924919--100925563 Score: 1182
Period size: 321 Copynumber: 2.0 Consensus size: 321
100924909 CTAGCTGGAT
* *
100924919 ATTCATATATATTTTCCTCCTCCTCCTCTCCATTCCACATCCTTAATGTATATAATACACTTATA
1 ATTCATACATATTTTCCTCCTCCTCCTCTCCATTCCACATCCTTAATGTATATAACACACTTATA
100924984 AGTAACATTATCTATAATCTTTATTATTTACTTTTATGAATATTCAAGCTGTCCATCTGTGTCAT
66 AGTAACATTATCTATAATCTTTATTATTTACTTTTATGAATATTCAAGCTGTCCATCTGTGTCAT
*
100925049 AGTCACAAAATTATTTATATCTGGAGCTATATAACTCTAAATTAAGATCCGATAATTTTTCCTAA
131 AGTCACAAAATTATTTATATCTGGAGCTATATAACTCCAAATTAAGATCCGATAATTTTTCCTAA
*
100925114 AACTAGACTCATATATATTCTTACCATAAAATTTTCAGAATTTTTGGTTTAGCCAATAAGTACAG
196 AACTAGACTCAAATATATTCTTACCATAAAATTTTCAGAATTTTTGGTTTAGCCAATAAGTACAG
*
100925179 TTTATTCTTTAAACTTACCCCTGTTCTGCTGTCTAACAGTTCCGACTCTTCTTCACTAAAA
261 TTTATTCTTTAAACTTACCCCTGTTCTGCTATCTAACAGTTCCGACTCTTCTTCACTAAAA
100925240 ATTCATACATATTTTCCTCCTCCTCCTCTCCATTCCACATCCTTAATGTATATAACACACTTATA
1 ATTCATACATATTTTCCTCCTCCTCCTCTCCATTCCACATCCTTAATGTATATAACACACTTATA
100925305 AGTAACATTATCTATAATCTTTATTATTTACTTTTATGAATATTCAAGCTGTCCATCTGTGTCAT
66 AGTAACATTATCTATAATCTTTATTATTTACTTTTATGAATATTCAAGCTGTCCATCTGTGTCAT
* *
100925370 AGTCACTAAATTATTTATATCTGGAGCTATATAACTCCAAATTAAGATCCGATAATTTTTCCTGA
131 AGTCACAAAATTATTTATATCTGGAGCTATATAACTCCAAATTAAGATCCGATAATTTTTCCTAA
* *
100925435 AACTAGACTCAAATATATTCTTATCATAAAATTTTCAGAATTTTTGGTTTATCCAATAAGTACAG
196 AACTAGACTCAAATATATTCTTACCATAAAATTTTCAGAATTTTTGGTTTAGCCAATAAGTACAG
* * *
100925500 TTTATTCTTTAAAGTTACTCTTGTTCTGCTATCTAACAGTTCCGACTCTTCTTCACTAAAA
261 TTTATTCTTTAAACTTACCCCTGTTCTGCTATCTAACAGTTCCGACTCTTCTTCACTAAAA
100925561 ATT
1 ATT
100925564 AATTATATCC
Statistics
Matches: 312, Mismatches: 12, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
321 312 1.00
ACGTcount: A:0.31, C:0.20, G:0.08, T:0.41
Consensus pattern (321 bp):
ATTCATACATATTTTCCTCCTCCTCCTCTCCATTCCACATCCTTAATGTATATAACACACTTATA
AGTAACATTATCTATAATCTTTATTATTTACTTTTATGAATATTCAAGCTGTCCATCTGTGTCAT
AGTCACAAAATTATTTATATCTGGAGCTATATAACTCCAAATTAAGATCCGATAATTTTTCCTAA
AACTAGACTCAAATATATTCTTACCATAAAATTTTCAGAATTTTTGGTTTAGCCAATAAGTACAG
TTTATTCTTTAAACTTACCCCTGTTCTGCTATCTAACAGTTCCGACTCTTCTTCACTAAAA
Found at i:100928089 original size:15 final size:14
Alignment explanation
Indices: 100928073--100928122 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 14
100928063 CCCCTCTTTC
100928073 TTTCTTTTTTTTTT
1 TTTCTTTTTTTTTT
100928087 CTTTCTTTTCTTTTCTT
1 -TTTCTTTT-TTTT-TT
100928104 TTTCTTTTTCTTTTT
1 TTTCTTTTT-TTTTT
100928119 TTTC
1 TTTC
100928123 AAACACTCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
15 15 0.47
16 15 0.47
17 2 0.06
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (14 bp):
TTTCTTTTTTTTTT
Found at i:100928096 original size:5 final size:5
Alignment explanation
Indices: 100928069--100928122 Score: 51
Period size: 5 Copynumber: 10.8 Consensus size: 5
100928059 ATTCCCCCTC
*
100928069 TTTC- TTTCT TTT-T TTTTT CTTTCT TTTCT TTTCTT TTTCTT TTTCT
1 TTTCT TTTCT TTTCT TTTCT -TTTCT TTTCT TTTC-T TTTC-T TTTCT
100928115 TTT-T TTTC
1 TTTCT TTTC
100928123 AAACACTCAA
Statistics
Matches: 44, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
4 12 0.27
5 17 0.39
6 15 0.34
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTCT
Found at i:100928108 original size:6 final size:6
Alignment explanation
Indices: 100928073--100928118 Score: 58
Period size: 6 Copynumber: 7.5 Consensus size: 6
100928063 CCCCTCTTTC
*
100928073 TTTCTT TTT-TT TTTCTT TCTTTTCT TTTCTT TTTCTT TTTCTT TTT
1 TTTCTT TTTCTT TTTCTT T-TTCT-T TTTCTT TTTCTT TTTCTT TTT
100928119 TTTCAAACAC
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
5 5 0.14
6 22 0.63
7 6 0.17
8 2 0.06
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTCTT
Found at i:100929330 original size:46 final size:46
Alignment explanation
Indices: 100929138--100929538 Score: 562
Period size: 46 Copynumber: 8.8 Consensus size: 46
100929128 TGATGTCATA
* * ** * *
100929138 GTATCTTTCAACTATGGTTTTACTGTTTTC-TGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
* * *
100929183 GTATCTTT-AACCATGGTCTTATTCATTTTC-TCCTCA--TTTCCATG
1 GTATCTTTCAACCATGGTCTTACTCA-TTTCAT-ATCAGGTTGCCATG
*
100929227 GTATCTTTCAACCATGGTCTTATTCATTTCATATCA-GTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
*
100929272 GTATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
* *
100929318 GTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
* *
100929364 GTATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
*
100929410 GTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
* *
100929456 GTATCTTTCAACCATAGTCTTACACATTTCATATCAGGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
* *
100929502 GTATCTTTCAACCATGGTCTTACACATTCCATATCAG
1 GTATCTTTCAACCATGGTCTTACTCATTTCATATCAG
100929539 AGAGCACACT
Statistics
Matches: 330, Mismatches: 20, Indels: 11
0.91 0.06 0.03
Matches are distributed among these distances:
44 34 0.10
45 72 0.22
46 224 0.68
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.41
Consensus pattern (46 bp):
GTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATG
Found at i:100932925 original size:14 final size:14
Alignment explanation
Indices: 100932906--100932932 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
100932896 TATGGACTAA
100932906 AATATTAAATATTG
1 AATATTAAATATTG
100932920 AATATTAAATATT
1 AATATTAAATATT
100932933 TAAGTTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (14 bp):
AATATTAAATATTG
Found at i:100932964 original size:21 final size:20
Alignment explanation
Indices: 100932945--100933001 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 20
100932935 AGTTTTTTAT
100932945 TTTTTAAGATTTTATTTTTAAA
1 TTTTTAA-ATTTT-TTTTTAAA
*
100932967 TTTTTAAATTTTTTTTGAAGA
1 TTTTTAAATTTTTTTTTAA-A
100932988 TTTTTAAATTTTTT
1 TTTTTAAATTTTTT
100933002 AAATTAACAT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
20 6 0.18
21 20 0.61
22 7 0.21
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (20 bp):
TTTTTAAATTTTTTTTTAAA
Found at i:100933790 original size:15 final size:15
Alignment explanation
Indices: 100933745--100933792 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
100933735 CTTAAACCCC
* *
100933745 AACCCTTAAACCATA
1 AACCCATAATCCATA
100933760 AA-CCATAATCTC-TA
1 AACCCATAATC-CATA
100933774 AACCCATAATCCATA
1 AACCCATAATCCATA
100933789 AACC
1 AACC
100933793 TTAAAATAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
14 11 0.39
15 17 0.61
ACGTcount: A:0.46, C:0.33, G:0.00, T:0.21
Consensus pattern (15 bp):
AACCCATAATCCATA
Found at i:100933797 original size:22 final size:20
Alignment explanation
Indices: 100933748--100933797 Score: 55
Period size: 22 Copynumber: 2.4 Consensus size: 20
100933738 AAACCCCAAC
100933748 CCTTAAACCATAAACCATAA
1 CCTTAAACCATAAACCATAA
* *
100933768 TCTCTAAACCCATAATCCATAAA
1 CCT-TAAA-CCATAAACCAT-AA
100933791 CCTTAAA
1 CCTTAAA
100933798 ATAGTAACTT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
20 2 0.08
21 4 0.17
22 14 0.58
23 4 0.17
ACGTcount: A:0.46, C:0.30, G:0.00, T:0.24
Consensus pattern (20 bp):
CCTTAAACCATAAACCATAA
Found at i:100933972 original size:7 final size:7
Alignment explanation
Indices: 100933960--100934003 Score: 52
Period size: 7 Copynumber: 6.3 Consensus size: 7
100933950 AACTCTTAAT
100933960 CCCTAAA
1 CCCTAAA
100933967 CCCTAAA
1 CCCTAAA
*
100933974 CCATAAA
1 CCCTAAA
*
100933981 TCCTAAA
1 CCCTAAA
* *
100933988 ACATAAA
1 CCCTAAA
100933995 CCCTAAA
1 CCCTAAA
100934002 CC
1 CC
100934004 AAGAACCCCT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.48, C:0.36, G:0.00, T:0.16
Consensus pattern (7 bp):
CCCTAAA
Found at i:100934011 original size:14 final size:14
Alignment explanation
Indices: 100933963--100934004 Score: 66
Period size: 14 Copynumber: 3.0 Consensus size: 14
100933953 TCTTAATCCC
100933963 TAAACCCTAAACCA
1 TAAACCCTAAACCA
* *
100933977 TAAATCCTAAAACA
1 TAAACCCTAAACCA
100933991 TAAACCCTAAACCA
1 TAAACCCTAAACCA
100934005 AGAACCCCTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.52, C:0.31, G:0.00, T:0.17
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:100934088 original size:15 final size:15
Alignment explanation
Indices: 100934066--100934100 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
100934056 AAACCACCCT
*
100934066 TAAA-CCATAATCCC
1 TAAACCCATAATCCA
100934080 TAAACCCATAATCCA
1 TAAACCCATAATCCA
100934095 TAAACC
1 TAAACC
100934101 TTAAAATAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.21
15 15 0.79
ACGTcount: A:0.46, C:0.34, G:0.00, T:0.20
Consensus pattern (15 bp):
TAAACCCATAATCCA
Found at i:100934243 original size:315 final size:296
Alignment explanation
Indices: 100933544--100934245 Score: 847
Period size: 296 Copynumber: 2.3 Consensus size: 296
100933534 TTACATAATT
* * * * * * *
100933544 TAAACTATAATCATAATT--TT-AATATATTAAAAATAGTATTATATCTTTTACAATTATATAAT
1 TAAACTATAATGATAATTAATTCAATATTTTAAAATTAATACTATCTCTTTTACAATTATATAAG
* * * * * *
100933606 AAATTATTTAATATATAAATTACAAAACATTAATTAATCTAAGCCTTAAACCCCTACCCCCTAAA
66 AAAATATTTAACATATAAATTAAAAAACACTAATTAAACTAAGCCTTAAACCCCTAACCCCTAAA
* * * * **
100933671 CCCTAAATCATAAACATAATCTATAAACCTTAAAAACCTAACACTTAACCCCTAACCCGTAAGTC
131 CCCTAAACCATAAACATAAACTATAAACCTAAAAAACCTAACACTTAACCCATAACCCGTAAACC
* *
100933736 TTAAACCCCAACCCTTAAACCATAAACCATAATCTCTAAACCCATAATCCATAAACCTTAAAATA
196 TTAAACCCCAACCATTAAACCATAAACCATAATCCCTAAACCCATAATCCATAAACCTTAAAATA
* * *
100933801 GTAACTTATACACTTTAAACCCTAAATCATAAACCC
261 GTAACTCATAAACATTAAACCCTAAATCATAAACCC
* *
100933837 TAAACTATAATGATAATTAATTCAATATTTTAAAATTAATACTATCTCTTTTATAATTGTATAAG
1 TAAACTATAATGATAATTAATTCAATATTTTAAAATTAATACTATCTCTTTTACAATTATATAAG
* * * * *
100933902 AAAATATTTATCATATAAATTAAAAAACACTAATTAAACTAATCCTTAAACTCTTAATCCCTAAA
66 AAAATATTTAACATATAAATTAAAAAACACTAATTAAACTAAGCCTTAAACCCCTAACCCCTAAA
* *
100933967 CCCTAAACCATAAATCCTAAAAC-ATAAACCCTAAACCAAGAACCCCTAACCCTTAACCCATAA-
131 CCCTAAACCATAAA-CAT-AAACTATAAA-CCT-AA--AA-AA--CCTAACACTTAACCCATAAC
*
100934030 CAGCTAAACCTTAAACCCCAACCATTAAACCACCCTTAAACCATAATCCCTAAACCCATAATCCA
187 CCG-TAAACCTTAAACCCCAACCATTAAACCA----TAAACCATAATCCCTAAACCCATAATCCA
*
100934095 TAAACCTTAAAATAGTAACTCATAAACATTAAACCCTTCACTATATACCGTAAACCC
247 TAAACCTTAAAATAGTAACTCATAAACATTAAACCC-T-A--A-AT--CATAAACCC
* *
100934152 TAAACTATAATGATAATTAATTCAACATTTTAAAATTAATACTATCTCTTTTACAATTATATGAG
1 TAAACTATAATGATAATTAATTCAATATTTTAAAATTAATACTATCTCTTTTACAATTATATAAG
100934217 AAAATATTTAACATATAAATTAAAAAACA
66 AAAATATTTAACATATAAATTAAAAAACA
100934246 ATTAGTCATA
Statistics
Matches: 345, Mismatches: 40, Indels: 26
0.84 0.10 0.06
Matches are distributed among these distances:
293 17 0.05
295 2 0.01
296 101 0.29
297 7 0.02
298 6 0.02
299 1 0.00
301 2 0.01
302 2 0.01
303 2 0.01
304 42 0.12
308 61 0.18
309 1 0.00
310 1 0.00
312 1 0.00
313 2 0.01
315 97 0.28
ACGTcount: A:0.46, C:0.22, G:0.02, T:0.30
Consensus pattern (296 bp):
TAAACTATAATGATAATTAATTCAATATTTTAAAATTAATACTATCTCTTTTACAATTATATAAG
AAAATATTTAACATATAAATTAAAAAACACTAATTAAACTAAGCCTTAAACCCCTAACCCCTAAA
CCCTAAACCATAAACATAAACTATAAACCTAAAAAACCTAACACTTAACCCATAACCCGTAAACC
TTAAACCCCAACCATTAAACCATAAACCATAATCCCTAAACCCATAATCCATAAACCTTAAAATA
GTAACTCATAAACATTAAACCCTAAATCATAAACCC
Found at i:100934882 original size:20 final size:20
Alignment explanation
Indices: 100934857--100934895 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
100934847 TGATATTAAT
*
100934857 TTTTAGTTATTAATTTTTTG
1 TTTTAGGTATTAATTTTTTG
100934877 TTTTAGGTATTAATTTTTT
1 TTTTAGGTATTAATTTTTT
100934896 TCTTTTGTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.21, C:0.00, G:0.10, T:0.69
Consensus pattern (20 bp):
TTTTAGGTATTAATTTTTTG
Found at i:100934894 original size:21 final size:20
Alignment explanation
Indices: 100934857--100934901 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
100934847 TGATATTAAT
* *
100934857 TTTTAGTTATTAATTTTTTG
1 TTTTAGGTATTAATTTTTTC
100934877 TTTTAGGTATTAATTTTTTTC
1 TTTTAGGTATTAA-TTTTTTC
100934898 TTTT
1 TTTT
100934902 GTAAATTTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.18, C:0.02, G:0.09, T:0.71
Consensus pattern (20 bp):
TTTTAGGTATTAATTTTTTC
Found at i:100937236 original size:17 final size:17
Alignment explanation
Indices: 100937216--100937250 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
100937206 TATTACATAA
100937216 ATAATACAATCACAAAT
1 ATAATACAATCACAAAT
* *
100937233 ATAATATAATTACAAAT
1 ATAATACAATCACAAAT
100937250 A
1 A
100937251 CAAATTCGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.60, C:0.11, G:0.00, T:0.29
Consensus pattern (17 bp):
ATAATACAATCACAAAT
Found at i:100937247 original size:23 final size:21
Alignment explanation
Indices: 100937212--100937255 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 21
100937202 TTATTATTAC
100937212 ATAAATAATAC-AATCACAAAT
1 ATAAATAATACAAAT-ACAAAT
100937233 ATAATATAATTACAAATACAAAT
1 ATAA-ATAA-TACAAATACAAAT
100937256 TCGAACCATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 4 0.20
22 4 0.20
23 9 0.45
24 3 0.15
ACGTcount: A:0.61, C:0.11, G:0.00, T:0.27
Consensus pattern (21 bp):
ATAAATAATACAAATACAAAT
Found at i:100938933 original size:137 final size:137
Alignment explanation
Indices: 100938711--100938969 Score: 327
Period size: 137 Copynumber: 1.9 Consensus size: 137
100938701 AAATTAGTGT
*
100938711 TTTTAAGAAAAAAATTATAATAAATATTTTTAACAATATTTTTATGACTATCAAGTGAATATTTT
1 TTTTAAGAAAAAAATCATAATAAATATTTTTAACAATATTTTTATGACTATCAAGTGAATATTTT
* * *
100938776 TTAAAAGAAATAAAATTTCACGCCAAAGAATTTAATAGAAGAATTTTAATGATGGTATCGATATT
66 TT-AAAGAAATAAAATTTCACACCAAAGAATTCAATAAAAGAATTTTAATGATGGTATCGATATT
100938841 TTTATTGC
130 TTTATTGC
*
100938849 TTTTAAG-AAAAAATCATAATAAATATTTTTAACGATATTTTTATTGCTATATAACTATCAAGTG
1 TTTTAAGAAAAAAATCATAATAAATATTTTTAACAATATTTTTA-TG-------ACTATCAAGTG
*
100938913 -A-A-TTTTT-AA-AAA-AAAA-TTCACACCAAAGAATTCAATAAAATAATTTTAATGATGGTA
58 AATATTTTTTAAAGAAATAAAATTTCACACCAAAGAATTCAATAAAAGAATTTTAATGATGGTA
100938970 ACAACTGCAC
Statistics
Matches: 107, Mismatches: 6, Indels: 17
0.82 0.05 0.13
Matches are distributed among these distances:
137 71 0.66
138 13 0.12
139 3 0.03
140 2 0.02
142 5 0.05
143 1 0.01
144 1 0.01
145 11 0.10
ACGTcount: A:0.45, C:0.07, G:0.09, T:0.39
Consensus pattern (137 bp):
TTTTAAGAAAAAAATCATAATAAATATTTTTAACAATATTTTTATGACTATCAAGTGAATATTTT
TTAAAGAAATAAAATTTCACACCAAAGAATTCAATAAAAGAATTTTAATGATGGTATCGATATTT
TTATTGC
Found at i:100939683 original size:18 final size:18
Alignment explanation
Indices: 100939660--100939695 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
100939650 CCAATTAAAT
100939660 CTTCATGTGTAGTTTTTC
1 CTTCATGTGTAGTTTTTC
100939678 CTTCATGTGTAGTTTTTC
1 CTTCATGTGTAGTTTTTC
100939696 TTACTCCGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.17, G:0.17, T:0.56
Consensus pattern (18 bp):
CTTCATGTGTAGTTTTTC
Found at i:100939890 original size:14 final size:14
Alignment explanation
Indices: 100939871--100939903 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
100939861 TGTTTCACTA
100939871 AAAATGACTTCTGG
1 AAAATGACTTCTGG
*
100939885 AAAATGATTTCTGG
1 AAAATGACTTCTGG
100939899 AAAAT
1 AAAAT
100939904 AATTTACTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.42, C:0.09, G:0.18, T:0.30
Consensus pattern (14 bp):
AAAATGACTTCTGG
Found at i:100939908 original size:14 final size:14
Alignment explanation
Indices: 100939879--100939908 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
100939869 TAAAAATGAC
*
100939879 TTCTGGAAAATGAT
1 TTCTGGAAAATAAT
100939893 TTCTGGAAAATAAT
1 TTCTGGAAAATAAT
100939907 TT
1 TT
100939909 ACTTTTCTGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.07, G:0.17, T:0.40
Consensus pattern (14 bp):
TTCTGGAAAATAAT
Found at i:100940487 original size:16 final size:16
Alignment explanation
Indices: 100940456--100940492 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
100940446 ATGTGAATAA
100940456 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
100940472 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
100940488 TATTA
1 TATTA
100940493 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:100940544 original size:22 final size:22
Alignment explanation
Indices: 100940504--100940559 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
100940494 AATAAAATTG
*
100940504 AAATATTAAA-TA-ATTTATTA
1 AAATAATAAATTATATTTATTA
100940524 AAATAATAAATTATATTTATTA
1 AAATAATAAATTATATTTATTA
* * *
100940546 TATTAATAATTTAT
1 AAATAATAAATTAT
100940560 TATATGAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 9 0.30
21 2 0.07
22 19 0.63
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AAATAATAAATTATATTTATTA
Found at i:100945065 original size:15 final size:15
Alignment explanation
Indices: 100945045--100945075 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
100945035 GAATAACTAA
100945045 AAAAAATAGATAGAT
1 AAAAAATAGATAGAT
100945060 AAAAAATAGATAGAT
1 AAAAAATAGATAGAT
100945075 A
1 A
100945076 GATGAGAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.13, T:0.19
Consensus pattern (15 bp):
AAAAAATAGATAGAT
Found at i:100945088 original size:19 final size:19
Alignment explanation
Indices: 100945042--100945078 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
100945032 AGTGAATAAC
100945042 TAAAAAA-A-ATAGATAGA
1 TAAAAAATAGATAGATAGA
100945059 TAAAAAATAGATAGATAGA
1 TAAAAAATAGATAGATAGA
100945078 T
1 T
100945079 GAGAGATAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.39
18 1 0.06
19 10 0.56
ACGTcount: A:0.65, C:0.00, G:0.14, T:0.22
Consensus pattern (19 bp):
TAAAAAATAGATAGATAGA
Found at i:100950796 original size:187 final size:187
Alignment explanation
Indices: 100950481--100950854 Score: 712
Period size: 187 Copynumber: 2.0 Consensus size: 187
100950471 ATTGCCCTGG
100950481 GCGGATAGCAGGAATCAAACCCGCGTCTTCTCCTTGGCAAAGAGAAATTTTACCATTCGACTATA
1 GCGGATAGCAGGAATCAAACCCGCGTCTTCTCCTTGGCAAAGAGAAATTTTACCATTCGACTATA
*
100950546 TCCATATTTTCGTTCTTGATTCTTGATACGAAAGAATATTTGGTCAGAGCTAGGACAGATACTTT
66 TCCACATTTTCGTTCTTGATTCTTGATACGAAAGAATATTTGGTCAGAGCTAGGACAGATACTTT
100950611 CTTCAGTTCAGGGCAATTTTATCAAATTCCACTACTAAACCAATTAACAATCGAAAT
131 CTTCAGTTCAGGGCAATTTTATCAAATTCCACTACTAAACCAATTAACAATCGAAAT
*
100950668 GCGGATAGCAGGAATCAAACCCGCGTCTTCTCCTTGGCAAAGAGAAATTTTACCATTTGACTATA
1 GCGGATAGCAGGAATCAAACCCGCGTCTTCTCCTTGGCAAAGAGAAATTTTACCATTCGACTATA
* *
100950733 TCCGCATTTTCGTTCTTTATTCTTGATACGAAAGAATATTTGGTCAGAGCTAGGACAGATACTTT
66 TCCACATTTTCGTTCTTGATTCTTGATACGAAAGAATATTTGGTCAGAGCTAGGACAGATACTTT
100950798 CTTCAGTTCAGGGCAATTTTATCAAATTCCACTACTAAACCAATTAACAATCGAAAT
131 CTTCAGTTCAGGGCAATTTTATCAAATTCCACTACTAAACCAATTAACAATCGAAAT
100950855 TATATAACAA
Statistics
Matches: 183, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
187 183 1.00
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31
Consensus pattern (187 bp):
GCGGATAGCAGGAATCAAACCCGCGTCTTCTCCTTGGCAAAGAGAAATTTTACCATTCGACTATA
TCCACATTTTCGTTCTTGATTCTTGATACGAAAGAATATTTGGTCAGAGCTAGGACAGATACTTT
CTTCAGTTCAGGGCAATTTTATCAAATTCCACTACTAAACCAATTAACAATCGAAAT
Found at i:100951013 original size:12 final size:12
Alignment explanation
Indices: 100950996--100951124 Score: 54
Period size: 12 Copynumber: 10.3 Consensus size: 12
100950986 TATATTTCTA
100950996 TATTATTTATTT
1 TATTATTTATTT
100951008 TATTATTCTATCTAT
1 TATTATT-TAT-T-T
*
100951023 TATTATATTA-TC
1 TATTAT-TTATTT
*
100951035 TATT-TTTATAT
1 TATTATTTATTT
*
100951046 TATCTATTTATATAC
1 TAT-TATTTAT-T-T
*
100951061 TATT-TTTA-TA
1 TATTATTTATTT
100951071 TATTA-TTATTAT
1 TATTATTTATT-T
* *
100951083 TATTATATATAT
1 TATTATTTATTT
*
100951095 TATTATTTCTATT
1 TATTATTTAT-TT
100951108 TAGTTA-TTATTT
1 TA-TTATTTATTT
100951120 ATATT
1 -TATT
100951125 TAGTATATTT
Statistics
Matches: 88, Mismatches: 13, Indels: 32
0.66 0.10 0.24
Matches are distributed among these distances:
10 10 0.11
11 6 0.07
12 30 0.34
13 24 0.27
14 5 0.06
15 12 0.14
16 1 0.01
ACGTcount: A:0.30, C:0.05, G:0.01, T:0.64
Consensus pattern (12 bp):
TATTATTTATTT
Found at i:100951014 original size:15 final size:15
Alignment explanation
Indices: 100950996--100951157 Score: 71
Period size: 17 Copynumber: 9.9 Consensus size: 15
100950986 TATATTTCTA
100950996 TATTATTTATTTTAT
1 TATTATTTATTTTAT
*
100951011 TATTCTATCTATTATTA-
1 TA-T-TATTTATT-TTAT
*
100951028 TATTATCTATTTT-T
1 TATTATTTATTTTAT
*
100951042 ATATTATCTATTTATAT
1 -TATTATTTATTT-TAT
100951059 ACTATT-TTTATATATTAT
1 --TATTATTTAT-T-TTAT
*
100951077 TATTATTATTATATATAT
1 TATTA-T-TTAT-TTTAT
*
100951095 TATTATTTCTATTTAGT
1 TATTATTTAT-TTTA-T
*
100951112 TATTATTTATATTTAG
1 TATTATTTAT-TTTAT
*
100951128 TA-TATTTAGAATTTAT
1 TATTATTT--ATTTTAT
*
100951144 TATTATTTAATTTA
1 TATTATTTATTTTA
100951158 AGTTAAATAG
Statistics
Matches: 120, Mismatches: 10, Indels: 34
0.73 0.06 0.21
Matches are distributed among these distances:
14 2 0.02
15 33 0.28
16 22 0.18
17 36 0.30
18 20 0.17
19 7 0.06
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (15 bp):
TATTATTTATTTTAT
Found at i:100951052 original size:30 final size:30
Alignment explanation
Indices: 100950994--100951088 Score: 96
Period size: 26 Copynumber: 3.3 Consensus size: 30
100950984 TCTATATTTC
*
100950994 TATATTATTTA-TTTTATTATTCTATCTATTAT
1 TATATTATCTATTTTTA-TA-T-TATCTATTAT
100951026 TATATTATCTATTTTTATATTATCTA-T-T
1 TATATTATCTATTTTTATATTATCTATTAT
100951054 TATA-TA-CTATTTTTATA-TAT-TATTAT
1 TATATTATCTATTTTTATATTATCTATTAT
100951080 TATTATTAT
1 TA-TATTAT
100951089 ATATATTATT
Statistics
Matches: 56, Mismatches: 1, Indels: 15
0.78 0.01 0.21
Matches are distributed among these distances:
24 2 0.04
25 4 0.07
26 14 0.25
27 4 0.07
28 7 0.12
29 1 0.02
30 6 0.11
31 1 0.02
32 12 0.21
33 5 0.09
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (30 bp):
TATATTATCTATTTTTATATTATCTATTAT
Found at i:100951074 original size:21 final size:21
Alignment explanation
Indices: 100951045--100951123 Score: 56
Period size: 19 Copynumber: 3.7 Consensus size: 21
100951035 TATTTTTATA
*
100951045 TTATCTATTTATATACTATTT
1 TTATATATTTATATACTATTT
* *
100951066 TTATATA-TTAT-TATTATTA
1 TTATATATTTATATACTATTT
*
100951085 TTATATATATTATTATTTCTATTT
1 TTATATAT-TTA-TA-TACTATTT
100951109 AGTTAT-TATTTATAT
1 --TTATATATTTATAT
100951124 TTAGTATATT
Statistics
Matches: 45, Mismatches: 6, Indels: 13
0.70 0.09 0.20
Matches are distributed among these distances:
19 13 0.29
20 4 0.09
21 9 0.20
22 2 0.04
23 2 0.04
24 8 0.18
25 3 0.07
26 4 0.09
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (21 bp):
TTATATATTTATATACTATTT
Found at i:100951118 original size:3 final size:3
Alignment explanation
Indices: 100950996--100951101 Score: 69
Period size: 3 Copynumber: 34.3 Consensus size: 3
100950986 TATATTTCTA
* *
100950996 TAT TATT TAT T-T TAT TAT T-C TAT CTAT TAT TA- TAT TAT CTAT TTT
1 TAT TA-T TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT -TAT TAT
* *
100951041 TA- TAT TAT CTATT TAT ATAC TAT TTT TAT ATAT TAT TAT TAT TAT TA-
1 TAT TAT TAT -TA-T TAT -TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT
100951088 TAT ATAT TAT TAT T
1 TAT -TAT TAT TAT T
100951102 TCTATTTAGT
Statistics
Matches: 82, Mismatches: 8, Indels: 26
0.71 0.07 0.22
Matches are distributed among these distances:
2 9 0.11
3 51 0.62
4 21 0.26
5 1 0.01
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:100951118 original size:17 final size:17
Alignment explanation
Indices: 100951061--100951162 Score: 83
Period size: 17 Copynumber: 6.1 Consensus size: 17
100951051 ATTTATATAC
100951061 TATT-TTTATATATTA-T
1 TATTATTTATAT-TTAGT
*
100951077 TATTATTATTATATATA-T
1 TATTA-T-TTATATTTAGT
*
100951095 TATTATTTCTATTTAGT
1 TATTATTTATATTTAGT
100951112 TATTATTTATATTTAG-
1 TATTATTTATATTTAGT
*
100951128 TA-TATTTAGAATTTA-T
1 TATTATTTA-TATTTAGT
100951144 TATTATTTA-ATTTAAGT
1 TATTATTTATATTT-AGT
100951161 TA
1 TA
100951163 AATAGAAAAA
Statistics
Matches: 72, Mismatches: 5, Indels: 17
0.77 0.05 0.18
Matches are distributed among these distances:
15 10 0.14
16 21 0.29
17 26 0.36
18 9 0.12
19 6 0.08
ACGTcount: A:0.33, C:0.01, G:0.04, T:0.62
Consensus pattern (17 bp):
TATTATTTATATTTAGT
Found at i:100951134 original size:32 final size:30
Alignment explanation
Indices: 100951076--100951157 Score: 87
Period size: 32 Copynumber: 2.6 Consensus size: 30
100951066 TTATATATTA
*
100951076 TTATTATTATTATATATATTATTATTT-CTAT
1 TTATTATTATT-TATAT-TTATTATTTACAAT
*
100951107 TTAGTTATTATTTATATTTAGTATATTTAGAAT
1 TTA-TTATTATTTATATTTA-T-TATTTACAAT
100951140 TTATTATTATTTA-ATTTA
1 TTATTATTATTTATATTTA
100951158 AGTTAAATAG
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
30 3 0.07
31 14 0.31
32 23 0.51
33 5 0.11
ACGTcount: A:0.33, C:0.01, G:0.04, T:0.62
Consensus pattern (30 bp):
TTATTATTATTTATATTTATTATTTACAAT
Found at i:100951169 original size:31 final size:32
Alignment explanation
Indices: 100951111--100951218 Score: 114
Period size: 31 Copynumber: 3.4 Consensus size: 32
100951101 TTCTATTTAG
* **
100951111 TTATTATTTATATTT-AGTATATTTAGAATTTA
1 TTATTATTTA-ATTTAAGTATAATTAGAATAAA
*
100951143 TTATTATTTAATTTAAGT-TAAATAGAA-AAA
1 TTATTATTTAATTTAAGTATAATTAGAATAAA
* *
100951173 TTAATAATTTAATTTAAGTATAATTAAAATAAA
1 TT-ATTATTTAATTTAAGTATAATTAGAATAAA
100951206 TTATTAATTTAAT
1 TTATT-ATTTAAT
100951219 AATTTAGAAT
Statistics
Matches: 63, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
30 3 0.05
31 26 0.41
32 22 0.35
33 12 0.19
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (32 bp):
TTATTATTTAATTTAAGTATAATTAGAATAAA
Found at i:100958474 original size:27 final size:27
Alignment explanation
Indices: 100958444--100958537 Score: 107
Period size: 27 Copynumber: 3.5 Consensus size: 27
100958434 ACCATAAAAA
* *
100958444 GAAAGCCTTTGTGGCAAAGTATTAAAT
1 GAAAACCTTTGTGGCAAAGCATTAAAT
* * * * *
100958471 GAAAATCTTTGTGGCGAACCATGAAAA
1 GAAAACCTTTGTGGCAAAGCATTAAAT
*
100958498 GAAAGCCTTTGTGGCAAAGCATTAAAT
1 GAAAACCTTTGTGGCAAAGCATTAAAT
*
100958525 GAAAATCTTTGTG
1 GAAAACCTTTGTG
100958538 AAAAATCTTG
Statistics
Matches: 52, Mismatches: 15, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.37, C:0.13, G:0.22, T:0.28
Consensus pattern (27 bp):
GAAAACCTTTGTGGCAAAGCATTAAAT
Found at i:100958510 original size:54 final size:54
Alignment explanation
Indices: 100958428--100958537 Score: 202
Period size: 54 Copynumber: 2.0 Consensus size: 54
100958418 CATGTTAGAA
*
100958428 TGGCGAACCATAAAAAGAAAGCCTTTGTGGCAAAGTATTAAATGAAAATCTTTG
1 TGGCGAACCATAAAAAGAAAGCCTTTGTGGCAAAGCATTAAATGAAAATCTTTG
*
100958482 TGGCGAACCATGAAAAGAAAGCCTTTGTGGCAAAGCATTAAATGAAAATCTTTG
1 TGGCGAACCATAAAAAGAAAGCCTTTGTGGCAAAGCATTAAATGAAAATCTTTG
100958536 TG
1 TG
100958538 AAAAATCTTG
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.25
Consensus pattern (54 bp):
TGGCGAACCATAAAAAGAAAGCCTTTGTGGCAAAGCATTAAATGAAAATCTTTG
Found at i:100958688 original size:27 final size:27
Alignment explanation
Indices: 100958658--100958725 Score: 93
Period size: 27 Copynumber: 2.5 Consensus size: 27
100958648 GAGAACTCTA
*
100958658 ACTCATGGTGAACTCTAAACGAATGGT
1 ACTCATGGTGAACTCTAAAAGAATGGT
* *
100958685 ACTCATGGTGAACTTTAAAAGAATTGT
1 ACTCATGGTGAACTCTAAAAGAATGGT
100958712 A-TACATGGTGAACT
1 ACT-CATGGTGAACT
100958726 ACGAAGGAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
26 1 0.03
27 36 0.97
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (27 bp):
ACTCATGGTGAACTCTAAAAGAATGGT
Found at i:100964856 original size:42 final size:42
Alignment explanation
Indices: 100964797--100964948 Score: 157
Period size: 42 Copynumber: 3.6 Consensus size: 42
100964787 ACTGAGATTA
* * *
100964797 CGTGTAAGACCATATCTGGGATAT-GAAGTCGATATGAGGCTT
1 CGTGTAAGACCATATCTGGGATATGGAA-TCAATACGAGACTT
*
100964839 CGTGTAAGACCATATCTGGGATATGGCATCAATACGAGACTT
1 CGTGTAAGACCATATCTGGGATATGGAATCAATACGAGACTT
* * * * *
100964881 CGTGTAAGACCATAGCTGGGCTATTGGCATCGATAC-ATGATTT
1 CGTGTAAGACCATATCTGGGATA-TGGAATCAATACGA-GACTT
* *
100964924 C-AGTAAGACCATATTTGGGATATGG
1 CGTGTAAGACCATATCTGGGATATGG
100964949 CATTGGTATG
Statistics
Matches: 95, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
41 3 0.03
42 74 0.78
43 18 0.19
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.28
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGGGATATGGAATCAATACGAGACTT
Found at i:100970242 original size:12 final size:12
Alignment explanation
Indices: 100970225--100970249 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
100970215 TTTTTAAAAT
100970225 TTAGGATTATTA
1 TTAGGATTATTA
100970237 TTAGGATTATTA
1 TTAGGATTATTA
100970249 T
1 T
100970250 AATATTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (12 bp):
TTAGGATTATTA
Found at i:100973721 original size:31 final size:31
Alignment explanation
Indices: 100973683--100973745 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
100973673 TTTGTTAATG
100973683 AGTTATTGCCTCCTATGAATAATAAACTTTT
1 AGTTATTGCCTCCTATGAATAATAAACTTTT
100973714 AGTTATTGCCTCCTATGAATAATAAACTTTT
1 AGTTATTGCCTCCTATGAATAATAAACTTTT
100973745 A
1 A
100973746 CTTTTTGTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.33, C:0.16, G:0.10, T:0.41
Consensus pattern (31 bp):
AGTTATTGCCTCCTATGAATAATAAACTTTT
Found at i:100977534 original size:289 final size:288
Alignment explanation
Indices: 100976990--100977702 Score: 1063
Period size: 289 Copynumber: 2.5 Consensus size: 288
100976980 AAATCTACTT
* * * * * *
100976990 CTTCAATTTGTTCTCTGACAATACAGAGATGCGAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATATAGAGATGCCAAATCATCTTAGATTTACTTCAACGTAAACAC
* * * *
100977055 GCGAAAGCCAAATCAACTATGTTTTTGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGGTTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
*
100977120 GGATCTATTTAAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACA
131 GGATCTACTTAAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACA
* * * *
100977185 AGAAGGCCAAATCATCTTGGATCTACTTCAGTATAAATATCTAAAGGTTAGATTTGCTATGTGTC
196 AGAAGGCCAAATCATCTTGGATCTACTTCAGTATAAACATCTAAAGGTGAGATCTGCTATGTATC
100977250 TGC-CCTCCGTCGAATATGGAGACGCCAAA
261 TGCTCC-CCGTCGAA-ATGGAGACGCCAAA
*
100977279 CTTCGATTTGTTCTCTGACAATATAGAGATGCCAAATCATCTTAGACTTACTTCAACGTAAACAC
1 CTTCGATTTGTTCTCTGACAATATAGAGATGCCAAATCATCTTAGATTTACTTCAACGTAAACAC
* *
100977344 GTGAAAGCCAAATCAGCTATGGTTTCGATTTGTTCCTTGTAAACACAAGGATACCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGGTTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
* * * *
100977409 GGATTTGCTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACA
131 GGATCTACTTAAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACA
* * *
100977474 AGAATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATC
196 AGAAGGCCAAATCATCTTGGATCTACTTCAGTATAAACATCTAAAGGTGAGATCTGCTATGTATC
* * *
100977539 TGCTCCCCGTCGAAGTGGAGATGCCAGA
261 TGCTCCCCGTCGAAATGGAGACGCCAAA
* **
100977567 CTTCGATTTGTTCTCTGAAAATATAGAGATGCCAAATCATCTTAGATTTGA-TTCATTGTAAACA
1 CTTCGATTTGTTCTCTGACAATATAGAGATGCCAAATCATCTTAGATTT-ACTTCAACGTAAACA
* * *
100977631 CGTGAAAGCCAAATCAGCTAT-GTCTTCGATTCGCTCCTTGTAAGCACAAGAATGCCAAATCATC
65 CGTGAAAGCCAAATCAGCTATGGT-TTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATC
100977695 TTGGATCT
129 TTGGATCT
100977703 CCTTCAGTAT
Statistics
Matches: 383, Mismatches: 38, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
287 2 0.01
288 132 0.34
289 247 0.64
290 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (288 bp):
CTTCGATTTGTTCTCTGACAATATAGAGATGCCAAATCATCTTAGATTTACTTCAACGTAAACAC
GTGAAAGCCAAATCAGCTATGGTTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
GGATCTACTTAAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACA
AGAAGGCCAAATCATCTTGGATCTACTTCAGTATAAACATCTAAAGGTGAGATCTGCTATGTATC
TGCTCCCCGTCGAAATGGAGACGCCAAA
Found at i:100977715 original size:205 final size:198
Alignment explanation
Indices: 100977435--100977938 Score: 749
Period size: 205 Copynumber: 2.5 Consensus size: 198
100977425 ATCTGAGAGT
* * *
100977435 CAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTTGGATCTGC
1 CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTTGGATCTAC
*
100977500 TTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTCGAAGTGGAGATGCCA
66 TTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTCAAAGTGGAGATGCCA
*
100977565 GACTTCGATTTGTTCTCTGAAAATATAGAGATGCCAAATCATCTTAGATTTGATTCAT-TGTAAA
131 GACTTCGATTTGTTCTCTGAAAATACAGAGATGCCAAATCATCTTAGATTTGATTCATCT-T---
100977629 CACGTGAAAGC
192 -A---GAAAGC
* * *
100977640 CAAATCAGCTATGTCTTCGATTCGCTCCTTGTAAGCACAAGAATGCCAAATCATCTTGGATCTCC
1 CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTTGGATCTAC
*
100977705 TTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTCAAAGTGGAGATGCTA
66 TTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTCAAAGTGGAGATGCCA
* * **
100977770 GACTTTGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTTCTTCATCTTAGAA
131 GACTTCGATTTGTTCTCTGAAAATACAGAGATGCCAAATCATCTTAGATTTGATTCATCTTAGAA
100977835 AGC
196 AGC
* * *
100977838 CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATAATTTTGGATCTTA
1 CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTTGGATC-TA
** *
100977903 CTTCAGTATAAACATCTGAAGGCCAAATCTGCTATG
65 CTTCAGTATAAACATCTGAAGGTGAGATCTGCTATG
100977939 CTGCGGCCTA
Statistics
Matches: 276, Mismatches: 21, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
198 63 0.23
199 34 0.12
201 1 0.00
205 177 0.64
206 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (198 bp):
CAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAATCATCTTGGATCTAC
TTCAGTATAAACATCTGAAGGTGAGATCTGCTATGTATCTGCTCCCCGTCAAAGTGGAGATGCCA
GACTTCGATTTGTTCTCTGAAAATACAGAGATGCCAAATCATCTTAGATTTGATTCATCTTAGAA
AGC
Found at i:100990369 original size:19 final size:20
Alignment explanation
Indices: 100990332--100990369 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
100990322 CATTAAAGCT
*
100990332 AAATTAAAAAATATGAAAAG
1 AAATTAAAAAATATAAAAAG
100990352 AAATT-AAAAATATAAAAA
1 AAATTAAAAAATATAAAAA
100990370 TTGCGAGAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (20 bp):
AAATTAAAAAATATAAAAAG
Found at i:100996079 original size:43 final size:43
Alignment explanation
Indices: 100996029--100996183 Score: 213
Period size: 43 Copynumber: 3.6 Consensus size: 43
100996019 TTGAAAAAAG
* * *
100996029 GCCGCTAAAGACTATGACCTTTAGCGGCACTTTTTTCACAAAT
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCACAAAC
* * * ** *
100996072 GCTGCTAAAGACCAGGACTTTTAGCGGCGC-TTTTAAAAAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCACAAAC
*
100996114 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCGCAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCACAAAC
100996157 GCCGCTAAAGACCATGACCTTTAGCGG
1 GCCGCTAAAGACCATGACCTTTAGCGG
100996184 AAAGATCATG
Statistics
Matches: 95, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
42 35 0.37
43 60 0.63
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (43 bp):
GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCACAAAC
Found at i:100996164 original size:85 final size:85
Alignment explanation
Indices: 100996017--100996183 Score: 253
Period size: 85 Copynumber: 2.0 Consensus size: 85
100996007 GTGACGTTTT
* * * * *
100996017 TTTTGAAAAAAGGCCGCTAAAGACTATGACCTTTAGCGGCACTTTTTTCACAAATGCTGCTAAAG
1 TTTTAAAAAAACGCCGCTAAAGACCATGACCTTTAGCGGCACTTTTTTCACAAACGCCGCTAAAG
*
100996082 ACCAGGACTTTTAGCGGCGC
66 ACCAGGACCTTTAGCGGCGC
* *
100996102 TTTTAAAAAAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTCGCAAACGCCGCTAAAG
1 TTTTAAAAAAACGCCGCTAAAGACCATGACCTTTAGCGGCACTTTTTTCACAAACGCCGCTAAAG
*
100996167 ACCATGACCTTTAGCGG
66 ACCAGGACCTTTAGCGG
100996184 AAAGATCATG
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
85 73 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (85 bp):
TTTTAAAAAAACGCCGCTAAAGACCATGACCTTTAGCGGCACTTTTTTCACAAACGCCGCTAAAG
ACCAGGACCTTTAGCGGCGC
Found at i:100996193 original size:21 final size:21
Alignment explanation
Indices: 100996163--100996202 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
100996153 AAACGCCGCT
100996163 AAAGACCATGACCTTTAGCGG
1 AAAGACCATGACCTTTAGCGG
*
100996184 AAAGATCATGACCTTTAGC
1 AAAGACCATGACCTTTAGC
100996203 AGCGCTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.23
Consensus pattern (21 bp):
AAAGACCATGACCTTTAGCGG
Found at i:100996269 original size:22 final size:22
Alignment explanation
Indices: 100996243--100996308 Score: 66
Period size: 22 Copynumber: 3.0 Consensus size: 22
100996233 AATGATCTTA
100996243 AAATAATTATTTTATTTTAATT
1 AAATAATTATTTTATTTTAATT
*
100996265 AAATAA-TA-TTTATTTCTATGTT
1 AAATAATTATTTTATTT-TA-ATT
*
100996287 AAAT-ATTATATTATGTTTAATT
1 AAATAATTATTTTAT-TTTAATT
100996309 TTTGAAATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
20 7 0.19
21 5 0.14
22 16 0.44
23 6 0.17
24 2 0.06
ACGTcount: A:0.39, C:0.02, G:0.03, T:0.56
Consensus pattern (22 bp):
AAATAATTATTTTATTTTAATT
Found at i:100996587 original size:17 final size:18
Alignment explanation
Indices: 100996560--100996593 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
100996550 ATGCCAAAAT
100996560 GTTGAACTCCATATTCCA
1 GTTGAACTCCATATTCCA
100996578 GTTG-ACTCCATATTCC
1 GTTGAACTCCATATTCC
100996594 CCCACATGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.24, C:0.29, G:0.12, T:0.35
Consensus pattern (18 bp):
GTTGAACTCCATATTCCA
Found at i:101003857 original size:37 final size:35
Alignment explanation
Indices: 101003816--101003985 Score: 100
Period size: 37 Copynumber: 4.7 Consensus size: 35
101003806 TAGTATCATA
*
101003816 TATTATGATTTTAGTAAATTCATATAAGAATATTGAT
1 TATTATGATTTTAGTAAATT-ATATAA-AATATTAAT
* * *
101003853 TATTAAGAATTTTATTAAATTATAT---ATTTTAAT
1 TATTATG-ATTTTAGTAAATTATATAAAATATTAAT
* * * *
101003886 TATAAT-ATATTTAATAATAATTATGTTAAATTATCT-A-
1 TATTATGAT-TTTAGT-A-AATTAT-ATAAAATAT-TAAT
*
101003923 TATTATGATTTGAGTAAATTCATATAAGAATATTAAT
1 TATTATGATTTTAGTAAATT-ATATAA-AATATTAAT
* *
101003960 TATTAAGAATTTTATTAAATTATATA
1 TATTATG-ATTTTAGTAAATTATATA
101003986 TTTTAATTAT
Statistics
Matches: 100, Mismatches: 18, Indels: 30
0.68 0.12 0.20
Matches are distributed among these distances:
31 2 0.02
32 5 0.05
33 11 0.11
34 6 0.06
35 9 0.09
36 8 0.08
37 30 0.30
38 28 0.28
39 1 0.01
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (35 bp):
TATTATGATTTTAGTAAATTATATAAAATATTAAT
Found at i:101003895 original size:16 final size:16
Alignment explanation
Indices: 101003874--101003919 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
101003864 TTATTAAATT
101003874 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
101003890 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
101003905 AT-TATGTTAAATTAT
1 ATATAT-TTTAATTAT
101003920 CTATATTATG
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.44
16 12 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:101003932 original size:107 final size:109
Alignment explanation
Indices: 101003809--101004024 Score: 400
Period size: 107 Copynumber: 2.0 Consensus size: 109
101003799 TATTTTATAG
* *
101003809 TATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 TATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
101003874 ATATATTTTAATTATAATATATTTAATAATAATTATG-TTAAAT
66 ATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
101003917 TATC-TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 TATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
101003981 ATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
66 ATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
101004025 ATGATTAAAT
Statistics
Matches: 105, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
107 95 0.90
108 10 0.10
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.49
Consensus pattern (109 bp):
TATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
ATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
Found at i:101004002 original size:16 final size:16
Alignment explanation
Indices: 101003981--101004022 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
101003971 TTATTAAATT
*
101003981 ATATATTTTAATTATA
1 ATATATTTTAATAATA
101003997 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
101004012 AT-TATGTTTAA
1 ATATAT-TTTAA
101004023 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:101004007 original size:15 final size:15
Alignment explanation
Indices: 101003972--101004013 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
101003962 TTAAGAATTT
*
101003972 TATTAAATTAT-ATA
1 TATTTAATTATAATA
101003986 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
101004000 TATTTAATAATAAT
1 TATTTAATTATAAT
101004014 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:101004037 original size:75 final size:75
Alignment explanation
Indices: 101003957--101004195 Score: 171
Period size: 75 Copynumber: 3.1 Consensus size: 75
101003947 TAAGAATATT
101003957 AATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTA
1 AATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTA
101004022 AATATGATTA
66 AATATGATTA
* ** * * * ** ** * * *
101004032 AATTATTTATTATTGATATT-AATAATCTTATTAAAATT-TAA-ATA-ACAATAACAATAATAAT
1 AATTATTAAGAATT-TTATTAAATTAT-ATATTTTAATTATAATATATTTAATAATAATTAT-GT
* ** *
101004093 TTACCAAAACAAATTTCTGCT
63 TTA--AATA-TGA--T-T--A
* *
101004114 AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATAGATTTAATAATAATTATGTTTA
1 AATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTA
101004179 AATATGATTA
66 AATATGATTA
*
101004189 AAATATT
1 AATTATT
101004196 TATTATTGAT
Statistics
Matches: 112, Mismatches: 37, Indels: 30
0.63 0.21 0.17
Matches are distributed among these distances:
73 10 0.09
74 7 0.06
75 25 0.22
76 15 0.13
77 2 0.02
78 1 0.01
79 1 0.01
80 2 0.02
81 15 0.13
82 18 0.16
83 6 0.05
84 10 0.09
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.46
Consensus pattern (75 bp):
AATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTA
AATATGATTA
Found at i:101004128 original size:157 final size:157
Alignment explanation
Indices: 101003956--101004272 Score: 571
Period size: 157 Copynumber: 2.0 Consensus size: 157
101003946 ATAAGAATAT
* *
101003956 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATAGATTTAATAATAATTATGTTT
* *
101004021 AAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
101004086 TAATAATTTACCAAAACAAATTTCTGC
131 TAATAATTTACCAAAACAAATTTATGC
101004113 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATAGATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATAGATTTAATAATAATTATGTTT
101004178 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
* *
101004243 TAATCATTTACTAAAACAAATTTATGC
131 TAATAATTTACCAAAACAAATTTATGC
101004270 TAA
1 TAA
101004273 GGGTATTCTA
Statistics
Matches: 153, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
157 153 1.00
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (157 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATAGATTTAATAATAATTATGTTT
AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
TAATAATTTACCAAAACAAATTTATGC
Found at i:101004416 original size:16 final size:16
Alignment explanation
Indices: 101004395--101004462 Score: 127
Period size: 16 Copynumber: 4.2 Consensus size: 16
101004385 GATTTGCTAT
101004395 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
101004411 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
101004427 TACACCTCCAATCCAA
1 TACACCTCTAATCCAA
101004443 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
101004459 TACA
1 TACA
101004463 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.24
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:101004671 original size:74 final size:71
Alignment explanation
Indices: 101004547--101004682 Score: 168
Period size: 74 Copynumber: 1.9 Consensus size: 71
101004537 CTAAGTAAAC
**
101004547 AATTATGTTTTTTTTGCGGCGTTTTTTTTAAACGCCACTAATCCCCTAAATCT-TCAATTAAAAT
1 AATTATGTTTTTTTTGCGGCGTTTTTTAAAAACGCCACTAATCCCCTAAATCTCT-AATTAAAAT
101004611 GACGTTA
65 GACGTTA
* * *
101004618 AATTATTTTATTTTTTGTGGCGTTTTTTCGAAAAACGCCACTAA-CCTCTTAAATCTCTAATTAA
1 AATTATGTT-TTTTTTGCGGCGTTTTTT--AAAAACGCCACTAATCC-CCTAAATCTCTAATTAA
101004682 A
62 A
101004683 TTTTACTTAA
Statistics
Matches: 55, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
71 8 0.15
72 17 0.31
73 2 0.04
74 27 0.49
75 1 0.02
ACGTcount: A:0.29, C:0.18, G:0.10, T:0.43
Consensus pattern (71 bp):
AATTATGTTTTTTTTGCGGCGTTTTTTAAAAACGCCACTAATCCCCTAAATCTCTAATTAAAATG
ACGTTA
Found at i:101005118 original size:22 final size:21
Alignment explanation
Indices: 101005084--101005132 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
101005074 CATAAACACT
*
101005084 AACCCTTGAACCTTTAACCCC
1 AACCCTTGAACCTTAAACCCC
*
101005105 AAACCCTT-ACACCTTAAACTCC
1 -AACCCTTGA-ACCTTAAACCCC
101005127 AACCCT
1 AACCCT
101005133 AACCCCTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 7 0.29
22 17 0.71
ACGTcount: A:0.33, C:0.43, G:0.02, T:0.22
Consensus pattern (21 bp):
AACCCTTGAACCTTAAACCCC
Found at i:101005212 original size:21 final size:22
Alignment explanation
Indices: 101005188--101005269 Score: 96
Period size: 21 Copynumber: 3.7 Consensus size: 22
101005178 ACTCCTAAAC
101005188 CTTAAACCCTAAACT-ATATAT
1 CTTAAACCCTAAACTCATATAT
* * *
101005209 CTTAAACCATAGTTAACTCATAAAC
1 CTTAAACCCTA---AACTCATATAT
101005234 CTTAAACCCTAAA-TCATATAT
1 CTTAAACCCTAAACTCATATAT
101005255 CTTAAACCCTAAACT
1 CTTAAACCCTAAACT
101005270 TTAAACTATA
Statistics
Matches: 50, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
21 29 0.58
22 3 0.06
24 4 0.08
25 14 0.28
ACGTcount: A:0.43, C:0.26, G:0.01, T:0.30
Consensus pattern (22 bp):
CTTAAACCCTAAACTCATATAT
Found at i:101005225 original size:46 final size:46
Alignment explanation
Indices: 101005172--101005262 Score: 157
Period size: 46 Copynumber: 2.0 Consensus size: 46
101005162 CTTCAAATAC
*
101005172 TAGTTAACTCCTAAACCTTAAACCCTAAA-CTATATATCTTAAACCA
1 TAGTTAACTCATAAACCTTAAACCCTAAATC-ATATATCTTAAACCA
101005218 TAGTTAACTCATAAACCTTAAACCCTAAATCATATATCTTAAACC
1 TAGTTAACTCATAAACCTTAAACCCTAAATCATATATCTTAAACC
101005263 CTAAACTTTA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
46 42 0.98
47 1 0.02
ACGTcount: A:0.42, C:0.25, G:0.02, T:0.31
Consensus pattern (46 bp):
TAGTTAACTCATAAACCTTAAACCCTAAATCATATATCTTAAACCA
Found at i:101005319 original size:25 final size:25
Alignment explanation
Indices: 101005285--101005334 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
101005275 CTATAATGAT
101005285 AATTAATTCGATATTTTAAATTCAA
1 AATTAATTCGATATTTTAAATTCAA
101005310 AATTAATTCGATATTTTAAATTCAA
1 AATTAATTCGATATTTTAAATTCAA
101005335 TACTATCTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.08, G:0.04, T:0.44
Consensus pattern (25 bp):
AATTAATTCGATATTTTAAATTCAA
Found at i:101005532 original size:41 final size:41
Alignment explanation
Indices: 101005470--101005656 Score: 313
Period size: 41 Copynumber: 4.6 Consensus size: 41
101005460 GACTTTTAAT
* * *
101005470 GGCGTTTTGTCGAAAGTGCCGCTAATGCTCTGGTTTTTAGC
1 GGCGTTTTGCCAAAAGCGCCGCTAATGCTCTGGTTTTTAGC
*
101005511 GGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGTTTTTAGC
1 GGCGTTTTGCCAAAAGCGCCGCTAATGCTCTGGTTTTTAGC
*
101005552 GGCGTTTTGCCAAAAGCGCCGCTATTGCTCT-GTTTTTAGC
1 GGCGTTTTGCCAAAAGCGCCGCTAATGCTCTGGTTTTTAGC
*
101005592 GGCGTTTTTCCAAAAGCGCCGCTAATGCTCTGGTTTTTAGC
1 GGCGTTTTGCCAAAAGCGCCGCTAATGCTCTGGTTTTTAGC
101005633 GGCGTTTTGCCAAAAGCGCCGCTA
1 GGCGTTTTGCCAAAAGCGCCGCTA
101005657 TAAAACGCCG
Statistics
Matches: 136, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
40 38 0.28
41 98 0.72
ACGTcount: A:0.17, C:0.24, G:0.26, T:0.33
Consensus pattern (41 bp):
GGCGTTTTGCCAAAAGCGCCGCTAATGCTCTGGTTTTTAGC
Found at i:101005610 original size:81 final size:82
Alignment explanation
Indices: 101005470--101005657 Score: 333
Period size: 81 Copynumber: 2.3 Consensus size: 82
101005460 GACTTTTAAT
* * * *
101005470 GGCGTTTTGTCGAAAGTGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTTCCAAAAGCGCCGCTA
1 GGCGTTTTGCCAAAAGCGCCGCTATTGCTCTGGTTTTTAGCGGCGTTTTTCCAAAAGCGCCGCTA
101005535 ATGCTCTGGTTTTTAGC
66 ATGCTCTGGTTTTTAGC
101005552 GGCGTTTTGCCAAAAGCGCCGCTATTGCTCT-GTTTTTAGCGGCGTTTTTCCAAAAGCGCCGCTA
1 GGCGTTTTGCCAAAAGCGCCGCTATTGCTCTGGTTTTTAGCGGCGTTTTTCCAAAAGCGCCGCTA
101005616 ATGCTCTGGTTTTTAGC
66 ATGCTCTGGTTTTTAGC
101005633 GGCGTTTTGCCAAAAGCGCCGCTAT
1 GGCGTTTTGCCAAAAGCGCCGCTAT
101005658 AAAACGCCGC
Statistics
Matches: 102, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
81 75 0.74
82 27 0.26
ACGTcount: A:0.16, C:0.24, G:0.26, T:0.34
Consensus pattern (82 bp):
GGCGTTTTGCCAAAAGCGCCGCTATTGCTCTGGTTTTTAGCGGCGTTTTTCCAAAAGCGCCGCTA
ATGCTCTGGTTTTTAGC
Found at i:101019822 original size:28 final size:26
Alignment explanation
Indices: 101019791--101019854 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
101019781 AATTACTTGA
* **
101019791 ATACCCCTATGTATGGAAAATTACTGTT
1 ATACCCCTA-G-ATGCAAAATTACCATT
*
101019819 ATACCCCTAGGTGCAAAATTACCATT
1 ATACCCCTAGATGCAAAATTACCATT
101019845 ATACCCCTAG
1 ATACCCCTAG
101019855 GGTTACTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 22 0.69
27 1 0.03
28 9 0.28
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (26 bp):
ATACCCCTAGATGCAAAATTACCATT
Found at i:101019999 original size:27 final size:26
Alignment explanation
Indices: 101019959--101020099 Score: 192
Period size: 27 Copynumber: 5.2 Consensus size: 26
101019949 AGGAAGTGTC
*
101019959 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
101019986 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
101020013 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
101020040 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
101020067 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
101020094 CTGGTG
1 CTGGTG
101020100 ACTTCATCAC
Statistics
Matches: 102, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
26 10 0.10
27 90 0.88
28 2 0.02
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:101020041 original size:54 final size:53
Alignment explanation
Indices: 101019959--101020099 Score: 237
Period size: 54 Copynumber: 2.6 Consensus size: 53
101019949 AGGAAGTGTC
101019959 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
101020013 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
101020067 CTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
101020100 ACTTCATCAC
Statistics
Matches: 83, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
53 7 0.08
54 76 0.92
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:101033478 original size:16 final size:16
Alignment explanation
Indices: 101033457--101033487 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
101033447 GACTTAGAAC
101033457 TAAATTATAAATATTG
1 TAAATTATAAATATTG
*
101033473 TAAATTGTAAATATT
1 TAAATTATAAATATT
101033488 TTGCCTGGGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.45
Consensus pattern (16 bp):
TAAATTATAAATATTG
Found at i:101043936 original size:40 final size:40
Alignment explanation
Indices: 101043853--101044072 Score: 259
Period size: 40 Copynumber: 5.5 Consensus size: 40
101043843 ACCCAAGTAT
** * *
101043853 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
101043891 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
101043931 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
101043971 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * *
101044011 CTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
101044051 CTTCGGGACTTAGCCTGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
101044073 CATTCGAATA
Statistics
Matches: 155, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 16 0.10
40 126 0.81
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:101052741 original size:46 final size:45
Alignment explanation
Indices: 101052631--101052847 Score: 150
Period size: 46 Copynumber: 4.7 Consensus size: 45
101052621 TCATACTTGT
* ** * *
101052631 GCCGATGCCATGTCCCAAACATGGTCTTACACTAAC-ACATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTCATCTTG-AG
* *
101052677 GTCGATACATGTCCCAGACATGTCTTACACTGGCTTACATCTTGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTT-CATCTTGAG
* * ** * * ** *
101052723 GCCGATGCATGTCTCAGACATGTCTTACTCTAACACTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-TTCATCTTGAG
* * ** *
101052769 GCCGATGCCATGTCCCAAACATGGTCTTACATTGGCTCTCATAATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TCATCTTGAG
*
101052817 GCCGATGCATGTCCCAGTCATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
101052848 AGCTCACACA
Statistics
Matches: 129, Mismatches: 35, Indels: 14
0.72 0.20 0.08
Matches are distributed among these distances:
44 11 0.09
45 14 0.11
46 60 0.47
47 25 0.19
48 19 0.15
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTCATCTTGAG
Found at i:101059704 original size:46 final size:46
Alignment explanation
Indices: 101059654--101059826 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
101059644 TGGTTGAGCA
101059654 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
101059700 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
101059745 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
101059793 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
101059827 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:101059810 original size:93 final size:93
Alignment explanation
Indices: 101059651--101059821 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
101059641 GGATGGTTGA
* *
101059651 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
101059716 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
101059744 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
101059809 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
101059822 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:101060088 original size:19 final size:20
Alignment explanation
Indices: 101060051--101060088 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
101060041 ATAAGGTGGT
101060051 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
101060071 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
101060089 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:101063746 original size:92 final size:92
Alignment explanation
Indices: 101063589--101063774 Score: 354
Period size: 92 Copynumber: 2.0 Consensus size: 92
101063579 AAAAGTTAAA
*
101063589 ATGTTAGGGGTGAATTTGTAATTTTTCATAAATATGAAATGTGGATTAAATTGAATACTAAAGTA
1 ATGTTAGGGGTGAATTTGTAATTTTGCATAAATATGAAATGTGGATTAAATTGAATACTAAAGTA
*
101063654 TTTAATTGAATGAAATTACGTATTTAG
66 TTTAATTGAATGAAATTACCTATTTAG
101063681 ATGTTAGGGGTGAATTTGTAATTTTGCATAAATATGAAATGTGGATTAAATTGAATACTAAAGTA
1 ATGTTAGGGGTGAATTTGTAATTTTGCATAAATATGAAATGTGGATTAAATTGAATACTAAAGTA
101063746 TTTAATTGAATGAAATTACCTATTTAG
66 TTTAATTGAATGAAATTACCTATTTAG
101063773 AT
1 AT
101063775 CAAGATAAAT
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
92 92 1.00
ACGTcount: A:0.38, C:0.04, G:0.18, T:0.40
Consensus pattern (92 bp):
ATGTTAGGGGTGAATTTGTAATTTTGCATAAATATGAAATGTGGATTAAATTGAATACTAAAGTA
TTTAATTGAATGAAATTACCTATTTAG
Found at i:101065525 original size:28 final size:27
Alignment explanation
Indices: 101065482--101065587 Score: 74
Period size: 28 Copynumber: 3.7 Consensus size: 27
101065472 GAAATTAGAG
101065482 TTAA-CTGGGCCTTAGCCCATATCAATA
1 TTAATCTGGGCC-TAGCCCATATCAATA
101065509 TTAATCTGGGCCATAGCCCCTTACAGTATCAA-A
1 TTAATCTGGGCC-TAG--CC---CA-TATCAATA
*
101065542 TT-ATACTGGGCCTAGCCCATATCAGTA
1 TTAAT-CTGGGCCTAGCCCATATCAATA
* *
101065569 TCAATCTTGGCCGTAGCCC
1 TTAATCTGGGCC-TAGCCC
101065588 TATTACAAGT
Statistics
Matches: 64, Mismatches: 4, Indels: 21
0.72 0.04 0.24
Matches are distributed among these distances:
26 5 0.08
27 14 0.22
28 18 0.28
30 4 0.06
32 5 0.08
33 12 0.19
34 6 0.09
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.28
Consensus pattern (27 bp):
TTAATCTGGGCCTAGCCCATATCAATA
Found at i:101065568 original size:32 final size:34
Alignment explanation
Indices: 101065501--101065573 Score: 91
Period size: 32 Copynumber: 2.2 Consensus size: 34
101065491 CCTTAGCCCA
*
101065501 TATCAATATTAATCTGGGCCATAGCCCCTTACAG
1 TATCAATATTAATCTGGGCCATAGCCCATTACAG
101065535 TATCAA-ATT-ATACTGGGCC-TAGCCCA-TATCAG
1 TATCAATATTAAT-CTGGGCCATAGCCCATTA-CAG
101065567 TATCAAT
1 TATCAAT
101065574 CTTGGCCGTA
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
31 2 0.06
32 17 0.49
33 10 0.29
34 6 0.17
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.30
Consensus pattern (34 bp):
TATCAATATTAATCTGGGCCATAGCCCATTACAG
Found at i:101065641 original size:20 final size:20
Alignment explanation
Indices: 101065616--101065661 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
101065606 GTTGGGCCTT
101065616 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
101065636 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
101065655 GCCCATA
1 GCCCATA
101065662 ACAAAACGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:101067236 original size:60 final size:60
Alignment explanation
Indices: 101067143--101067266 Score: 239
Period size: 60 Copynumber: 2.1 Consensus size: 60
101067133 TATATTCGAA
*
101067143 TCCCTTGTTTTGCTCCTTAATTTTAGCCCTTAGCACAGTTTGAATTTCATTTAAACTCCT
1 TCCCTTATTTTGCTCCTTAATTTTAGCCCTTAGCACAGTTTGAATTTCATTTAAACTCCT
101067203 TCCCTTATTTTGCTCCTTAATTTTAGCCCTTAGCACAGTTTGAATTTCATTTAAACTCCT
1 TCCCTTATTTTGCTCCTTAATTTTAGCCCTTAGCACAGTTTGAATTTCATTTAAACTCCT
101067263 TCCC
1 TCCC
101067267 ACCGTTTAGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 63 1.00
ACGTcount: A:0.20, C:0.27, G:0.09, T:0.44
Consensus pattern (60 bp):
TCCCTTATTTTGCTCCTTAATTTTAGCCCTTAGCACAGTTTGAATTTCATTTAAACTCCT
Found at i:101071551 original size:39 final size:39
Alignment explanation
Indices: 101071486--101071636 Score: 135
Period size: 39 Copynumber: 3.7 Consensus size: 39
101071476 ACGTTGTTTG
* *
101071486 AAATTATA-TTTAAGTCTTTAAATAAATTATAGTAAGTT
1 AAATTATATTTTAAGTCTCTAATTAAATTATAGTAAGTT
* * *
101071524 AAATTATATTTTAAATCTCTAAGTAAATTCT-GTTAAGTT
1 AAATTATATTTTAAGTCTCTAATTAAATTATAG-TAAGTT
* ** *
101071563 AACAATTAAATTATGTTGAACCCTCTAATTAAATTATATTAAGTT
1 -A-AATT--A-TAT-TTTAAGTCTCTAATTAAATTATAGTAAGTT
*
101071608 ACATTATATTTTAAGTCTCTAATTAAATT
1 AAATTATATTTTAAGTCTCTAATTAAATT
101071637 TGTGTGATGA
Statistics
Matches: 90, Mismatches: 14, Indels: 17
0.74 0.12 0.14
Matches are distributed among these distances:
38 9 0.10
39 41 0.46
40 4 0.04
41 5 0.06
43 4 0.04
44 4 0.04
45 23 0.26
ACGTcount: A:0.41, C:0.08, G:0.07, T:0.44
Consensus pattern (39 bp):
AAATTATATTTTAAGTCTCTAATTAAATTATAGTAAGTT
Found at i:101082540 original size:40 final size:40
Alignment explanation
Indices: 101082480--101082659 Score: 213
Period size: 40 Copynumber: 4.5 Consensus size: 40
101082470 TATTCGAATG
*
101082480 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
* * *
101082520 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACT
* *
101082560 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
* * * * **
101082600 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
*
101082639 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
101082660 ATACTTGGGT
Statistics
Matches: 120, Mismatches: 18, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
38 13 0.11
39 16 0.13
40 90 0.75
41 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
Found at i:101082613 original size:80 final size:79
Alignment explanation
Indices: 101082480--101082659 Score: 245
Period size: 80 Copynumber: 2.3 Consensus size: 79
101082470 TATTCGAATG
** * *
101082480 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGATCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTGACCATATCCGGACTAAGACCCGAAGGC-
* *
101082545 TTTGTGCTAGCGACT
65 CTTGTGCGAGCGACT
*
101082560 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTGACCATATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTGACCATATCCGGACTAAGACCCGAAGGCC
* **
101082625 TTGTGCGAGTGGTT
66 TTGTGCGAGCGACT
*
101082639 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
101082660 ATACTTGGGT
Statistics
Matches: 89, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
78 14 0.16
79 16 0.18
80 59 0.66
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCAATTATGCTAGTGACCATATCCGGACTAAGACCCGAAGGCC
TTGTGCGAGCGACT
Done.