Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 302 of 349
Found at i:101096246 original size:19 final size:19
Alignment explanation
Indices: 101096203--101096246 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
101096193 AGTAAAATGT
* *
101096203 TTTTCAGAAAATGATTTAT
1 TTTTCTGAAAATGATTTAC
101096222 TTTTCTGAAAATGATTTAC
1 TTTTCTGAAAATGATTTAC
101096241 TTTTCT
1 TTTTCT
101096247 AGTGTTTGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.30, C:0.09, G:0.09, T:0.52
Consensus pattern (19 bp):
TTTTCTGAAAATGATTTAC
Found at i:101096685 original size:45 final size:45
Alignment explanation
Indices: 101096621--101096711 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
101096611 TTTATGAATT
101096621 CTGGCAAATAGATCCATAATTCCAAATCCATAAAGAGAAAAAAAG
1 CTGGCAAATAGATCCATAATTCCAAATCCATAAAGAGAAAAAAAG
101096666 CTGGCAAATAGATCCATAATTCCAAATCCATAAAGAGAAAAAAAG
1 CTGGCAAATAGATCCATAATTCCAAATCCATAAAGAGAAAAAAAG
101096711 C
1 C
101096712 ATGTATAAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.51, C:0.19, G:0.13, T:0.18
Consensus pattern (45 bp):
CTGGCAAATAGATCCATAATTCCAAATCCATAAAGAGAAAAAAAG
Found at i:101108129 original size:26 final size:26
Alignment explanation
Indices: 101108099--101108182 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
101108089 TTGATGCAAG
101108099 TGTATAAAAAATAATTGATTTAAATA
1 TGTATAAAAAATAATTGATTTAAATA
*** * ** *
101108125 TGTATATAATGTTAGTTTGA-TGCAA-G
1 TGTATA-AAAAATA-ATTGATTTAAATA
101108151 TGTATAAAAAATAATTGATTTAAATA
1 TGTATAAAAAATAATTGATTTAAATA
101108177 TGTATA
1 TGTATA
101108183 TAATGTTAAC
Statistics
Matches: 40, Mismatches: 14, Indels: 8
0.65 0.23 0.13
Matches are distributed among these distances:
24 4 0.10
25 7 0.17
26 18 0.45
27 7 0.17
28 4 0.10
ACGTcount: A:0.45, C:0.01, G:0.13, T:0.40
Consensus pattern (26 bp):
TGTATAAAAAATAATTGATTTAAATA
Found at i:101108163 original size:52 final size:52
Alignment explanation
Indices: 101108085--101108190 Score: 212
Period size: 52 Copynumber: 2.0 Consensus size: 52
101108075 GACTCAGGTG
101108085 TAGTTTGATGCAAGTGTATAAAAAATAATTGATTTAAATATGTATATAATGT
1 TAGTTTGATGCAAGTGTATAAAAAATAATTGATTTAAATATGTATATAATGT
101108137 TAGTTTGATGCAAGTGTATAAAAAATAATTGATTTAAATATGTATATAATGT
1 TAGTTTGATGCAAGTGTATAAAAAATAATTGATTTAAATATGTATATAATGT
101108189 TA
1 TA
101108191 ACTTCACTCT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 54 1.00
ACGTcount: A:0.42, C:0.02, G:0.15, T:0.41
Consensus pattern (52 bp):
TAGTTTGATGCAAGTGTATAAAAAATAATTGATTTAAATATGTATATAATGT
Found at i:101108168 original size:24 final size:24
Alignment explanation
Indices: 101108089--101108169 Score: 63
Period size: 26 Copynumber: 3.2 Consensus size: 24
101108079 CAGGTGTAGT
101108089 TTGATGCAAGTGTATAAAAAATAA
1 TTGATGCAAGTGTATAAAAAATAA
** * *** *
101108113 TTGATTTAAATATGTATATAATGTTAGT
1 TTGA-TGCAA-GTGTATA-AAAAATA-A
101108141 TTGATGCAAGTGTATAAAAAATAA
1 TTGATGCAAGTGTATAAAAAATAA
101108165 TTGAT
1 TTGAT
101108170 TTAAATATGT
Statistics
Matches: 39, Mismatches: 14, Indels: 8
0.64 0.23 0.13
Matches are distributed among these distances:
24 9 0.23
25 7 0.18
26 12 0.31
27 7 0.18
28 4 0.10
ACGTcount: A:0.43, C:0.02, G:0.16, T:0.38
Consensus pattern (24 bp):
TTGATGCAAGTGTATAAAAAATAA
Found at i:101114505 original size:31 final size:29
Alignment explanation
Indices: 101114436--101114509 Score: 103
Period size: 29 Copynumber: 2.5 Consensus size: 29
101114426 ACAAAATAAT
**
101114436 AACATAAGTGACTAAAACGTAACATTTCA
1 AACATAAGTGACTAAAACGTAACATGGCA
101114465 AACATAAGTGACTAAAACGTAACATGAGGCA
1 AACATAAGTGACTAAAACGTAACAT--GGCA
*
101114496 AACAAAAGTGACTA
1 AACATAAGTGACTA
101114510 TTTTTGTAGT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
29 25 0.62
31 15 0.38
ACGTcount: A:0.50, C:0.16, G:0.15, T:0.19
Consensus pattern (29 bp):
AACATAAGTGACTAAAACGTAACATGGCA
Found at i:101125137 original size:17 final size:17
Alignment explanation
Indices: 101125115--101125148 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
101125105 CCTAAAATCT
101125115 AATTTAGCCTCTAATTA
1 AATTTAGCCTCTAATTA
* *
101125132 AATTTATCCTTTAATTA
1 AATTTAGCCTCTAATTA
101125149 TAATATAATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.15, G:0.03, T:0.47
Consensus pattern (17 bp):
AATTTAGCCTCTAATTA
Found at i:101125254 original size:54 final size:53
Alignment explanation
Indices: 101125190--101125350 Score: 170
Period size: 54 Copynumber: 3.1 Consensus size: 53
101125180 GTCCCATTAT
* *
101125190 AATATAAATTATCCTTTAATTAAATTCAATTTTTAATATAAATTTATTACTTTA
1 AATATAAATTATCCTATAATTAAATTC-ATTTTTAATTTAAATTTATTACTTTA
* * *
101125244 AATATAAATTAT-CTATAATT-AATT-ATTTTT-ATTTTAATTTATTGCCTTA
1 AATATAAATTATCCTATAATTAAATTCATTTTTAATTTAAATTTATTACTTTA
* * * * *
101125293 AATATAATTTATCATCTAATTAAATTCTATTTTTATTTTAAATTTCTTGA-TTTA
1 AATATAAATTATCCTATAATTAAATTC-ATTTTTAATTTAAATTTATT-ACTTTA
101125347 AATA
1 AATA
101125351 ATTTTTTTAA
Statistics
Matches: 88, Mismatches: 13, Indels: 12
0.78 0.12 0.11
Matches are distributed among these distances:
49 26 0.30
50 12 0.14
51 4 0.05
52 4 0.05
53 13 0.15
54 29 0.33
ACGTcount: A:0.39, C:0.07, G:0.01, T:0.53
Consensus pattern (53 bp):
AATATAAATTATCCTATAATTAAATTCATTTTTAATTTAAATTTATTACTTTA
Found at i:101125294 original size:49 final size:50
Alignment explanation
Indices: 101125190--101125333 Score: 155
Period size: 49 Copynumber: 2.8 Consensus size: 50
101125180 GTCCCATTAT
* * * *
101125190 AATATAAATTATCCTTTAATTAAATTCAATTTTTAATATAAATTTATTACTTTA
1 AATATAAATTAT-CTATAATTAAATT--ATTTTT-ATTTTAATTTATTACCTTA
*
101125244 AATATAAATTATCTATAATT-AATTATTTTTATTTTAATTTATTGCCTTA
1 AATATAAATTATCTATAATTAAATTATTTTTATTTTAATTTATTACCTTA
* *
101125293 AATATAATTTATCATCTAATTAAATTCTATTTTTATTTTAA
1 AATATAAATTATC-TATAATTAAA-T-TATTTTTATTTTAA
101125334 ATTTCTTGAT
Statistics
Matches: 79, Mismatches: 7, Indels: 9
0.83 0.07 0.09
Matches are distributed among these distances:
49 27 0.34
50 12 0.15
51 2 0.03
52 5 0.06
53 21 0.27
54 12 0.15
ACGTcount: A:0.40, C:0.07, G:0.01, T:0.53
Consensus pattern (50 bp):
AATATAAATTATCTATAATTAAATTATTTTTATTTTAATTTATTACCTTA
Found at i:101125552 original size:51 final size:51
Alignment explanation
Indices: 101125487--101125598 Score: 143
Period size: 51 Copynumber: 2.2 Consensus size: 51
101125477 CCCCAGCACT
* * * * * *
101125487 AATTGTTTTTAATCTGGTACAAGAGTGTCAGTCATTAGTATCCCAACATCC
1 AATTTTTTTTAATCTAGTACAAGAGTGTCAATCATCAGTATCCCAAAACCC
* **
101125538 AATTTTTTTTAATCTAGTACAAGATTGTCAATCATCAGTATCTTAAAACCC
1 AATTTTTTTTAATCTAGTACAAGAGTGTCAATCATCAGTATCCCAAAACCC
101125589 AATTTTTTTT
1 AATTTTTTTT
101125599 TTGATTTTTG
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.41
Consensus pattern (51 bp):
AATTTTTTTTAATCTAGTACAAGAGTGTCAATCATCAGTATCCCAAAACCC
Found at i:101128827 original size:43 final size:43
Alignment explanation
Indices: 101128766--101128965 Score: 201
Period size: 43 Copynumber: 4.7 Consensus size: 43
101128756 TGAGATATCA
* * *
101128766 TGTAAGACCCTATTTGGGATAGTGGCATCGATATATGATTTCG
1 TGTAAGACCCTGTCTGGGACAGTGGCATCGATATATGATTTCG
* *
101128809 TGTAAGACCAC-GTCTGGGACATTGGCATCGATTTGA-GATTTACG
1 TGTAAGACC-CTGTCTGGGACAGTGGCATCGATAT-ATGATTT-CG
* * * * *
101128853 TGTAAGACCATGTCTGGGACATTGGCATCGA-ATTTAATTTTG
1 TGTAAGACCCTGTCTGGGACAGTGGCATCGATATATGATTTCG
* * * * *
101128895 TGTAAGACCCTGTTTGGGATAGTGGCATCGATATTTGATTACA
1 TGTAAGACCCTGTCTGGGACAGTGGCATCGATATATGATTTCG
101128938 TGTAAGACCCTGTCTGGGAC-GTTGGCAT
1 TGTAAGACCCTGTCTGGGACAG-TGGCAT
101128966 TGTACGAGTA
Statistics
Matches: 130, Mismatches: 20, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
42 29 0.22
43 68 0.52
44 33 0.25
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (43 bp):
TGTAAGACCCTGTCTGGGACAGTGGCATCGATATATGATTTCG
Found at i:101134005 original size:45 final size:45
Alignment explanation
Indices: 101133941--101134112 Score: 228
Period size: 45 Copynumber: 3.9 Consensus size: 45
101133931 GTTATTCAAG
*
101133941 TATTCGGGCCTTTGAGCCTAGCTGGCTATAATGCCGGTGAGATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
*
101133986 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
*
101134031 TATTCGGG-CTTTCGAGCCTAACAGGCTATAATGCCGGTGA-A-AT
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAGATAT
* * * *
101134074 GATATCGGGCC-TCGAGCCTAGTAGGC-AAAATGCCGGTGA
1 TAT-TCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
101134113 TTTGAGAAAA
Statistics
Matches: 115, Mismatches: 9, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
42 12 0.10
43 14 0.12
44 11 0.10
45 78 0.68
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
Found at i:101138014 original size:15 final size:15
Alignment explanation
Indices: 101137991--101138020 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
101137981 TCAAAAACTC
101137991 TAATACAAAACATAT
1 TAATACAAAACATAT
*
101138006 TAATCCAAAACATAT
1 TAATACAAAACATAT
101138021 CTTTCATAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.17, G:0.00, T:0.27
Consensus pattern (15 bp):
TAATACAAAACATAT
Found at i:101142150 original size:42 final size:43
Alignment explanation
Indices: 101141977--101142166 Score: 154
Period size: 42 Copynumber: 4.4 Consensus size: 43
101141967 TGAGATATCG
* ** *
101141977 TGTAAGACCCTGTCTGGGACAGTGGCAACGATATATGATTTCA
1 TGTAAGACCCTGTCTGGGACAATGGCATTGATATATGATTACA
** * *
101142020 TGTAAGACCAC-GTCTGGGACGTTGGCATTGATTTGA-GATTTACG
1 TGTAAGACC-CTGTCTGGGACAATGGCATTGATAT-ATGA-TTACA
* * * * * * * *
101142064 TGTAAGACCATGTTTGGGATATTGGCA-TCATATTTAATTTCA
1 TGTAAGACCCTGTCTGGGACAATGGCATTGATATATGATTACA
*
101142106 TGTAAGACCCTGTCTGGG-CAATGACATTGATATATGATTACA
1 TGTAAGACCCTGTCTGGGACAATGGCATTGATATATGATTACA
**
101142148 TGTAAGACAATGTCTGGGA
1 TGTAAGACCCTGTCTGGGA
101142167 TGTTAGCATT
Statistics
Matches: 112, Mismatches: 28, Indels: 14
0.73 0.18 0.09
Matches are distributed among these distances:
41 5 0.04
42 46 0.41
43 34 0.30
44 27 0.24
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (43 bp):
TGTAAGACCCTGTCTGGGACAATGGCATTGATATATGATTACA
Found at i:101147860 original size:27 final size:26
Alignment explanation
Indices: 101147830--101147984 Score: 195
Period size: 27 Copynumber: 5.7 Consensus size: 26
101147820 GGTGGCTAAT
101147830 CCACAATTATCTGATCTGGTGGCTCTG
1 CCAC-ATTATCTGATCTGGTGGCTCTG
* *
101147857 CCACATATATCTGTTCTGGTGGCTATG
1 CCACAT-TATCTGATCTGGTGGCTCTG
101147884 CCACGATTATCTGATCTGGTGGCTCTG
1 CCAC-ATTATCTGATCTGGTGGCTCTG
101147911 CCACATATATCT-ATTCTGGTGGCTCTG
1 CCACAT-TATCTGA-TCTGGTGGCTCTG
*
101147938 CCACAATTATCTGTATCTGGTGACTCTG
1 CCAC-ATTATCTG-ATCTGGTGGCTCTG
*
101147966 TCACATTATCTGTATCTGG
1 CCACATTATCTG-ATCTGG
101147985 CAGCCATGCT
Statistics
Matches: 115, Mismatches: 6, Indels: 14
0.85 0.04 0.10
Matches are distributed among these distances:
26 5 0.04
27 90 0.78
28 19 0.17
29 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.36
Consensus pattern (26 bp):
CCACATTATCTGATCTGGTGGCTCTG
Found at i:101147900 original size:54 final size:54
Alignment explanation
Indices: 101147818--101147984 Score: 248
Period size: 54 Copynumber: 3.1 Consensus size: 54
101147808 AGGAAGCGTC
101147818 CTGGTGGCTAAT-CCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCT-ATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
101147872 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTATT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* * *
101147926 CTGGTGGCTCTGCCACAATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTAT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGGCTCTGCCACATATATCTGT-T
101147981 CTGG
1 CTGG
101147985 CAGCCATGCT
Statistics
Matches: 103, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
53 2 0.02
54 78 0.76
55 23 0.22
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:101155934 original size:27 final size:26
Alignment explanation
Indices: 101155894--101156060 Score: 192
Period size: 27 Copynumber: 6.2 Consensus size: 26
101155884 AGGAAGCGTC
*
101155894 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
101155921 CTGGTGGCTCTGCCACATATATCT-ATT
1 CTGGTGGCTCTGCCACAT-TATCTGA-T
* *
101155948 CTGGTGGCTATGTCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
101155975 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
101156002 CTGGTGGCTCTACCACAATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* *
101156030 CTGGTGACTCTGTCACATTATCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
101156057 CTGG
1 CTGG
101156061 CAGCCGTGCT
Statistics
Matches: 122, Mismatches: 11, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
26 5 0.04
27 98 0.80
28 19 0.16
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:101156050 original size:81 final size:82
Alignment explanation
Indices: 101155894--101156060 Score: 225
Period size: 81 Copynumber: 2.0 Consensus size: 82
101155884 AGGAAGCGTC
* *
101155894 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTATTCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTATTCTGGTGACTAT
101155959 GTCACGATTATCTG-AT
66 GTCACGATTATCTGTAT
* * *
101155975 CTGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTACCACA-ATTATCTGTATCTGGTGAC
1 CTGGTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCTACCACATA-TATCTAT-TCTGGTGAC
*
101156038 TCTGTCAC-ATTATCTGTAT
63 TATGTCACGATTATCTGTAT
101156057 CTGG
1 CTGG
101156061 CAGCCGTGCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
80 3 0.04
81 52 0.68
82 21 0.28
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.37
Consensus pattern (82 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTATTCTGGTGACTAT
GTCACGATTATCTGTAT
Found at i:101156053 original size:54 final size:54
Alignment explanation
Indices: 101155894--101156060 Score: 246
Period size: 54 Copynumber: 3.1 Consensus size: 54
101155884 AGGAAGCGTC
*
101155894 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTATT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
101155948 CTGGTGGCTATGTCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* * * *
101156002 CTGGTGGCTCTACCACAATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTAT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGGCTCTGCCACATATATCTGT-T
101156057 CTGG
1 CTGG
101156061 CAGCCGTGCT
Statistics
Matches: 102, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
54 79 0.77
55 23 0.23
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:101157892 original size:19 final size:19
Alignment explanation
Indices: 101157867--101157957 Score: 125
Period size: 19 Copynumber: 4.9 Consensus size: 19
101157857 ATAATCTTCA
101157867 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
* * *
101157886 GTGATATGGAATCTTTGAT
1 ATGATATGCAATCTTAGAT
101157905 ATGATAT--AATCTTAGAT
1 ATGATATGCAATCTTAGAT
101157922 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
101157940 ATGATATACAATCTTAGA
1 ATGATATGCAATCTTAGA
101157958 AGATATGATT
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
16 1 0.02
17 14 0.22
18 15 0.24
19 33 0.52
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.38
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:101157945 original size:23 final size:21
Alignment explanation
Indices: 101157918--101157977 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 21
101157908 ATATAATCTT
101157918 AGATATGATTGCAATCTT---
1 AGATATGATTGCAATCTTAGA
*
101157936 AGATATGATATACAATCTTAGA
1 AGATATGAT-TGCAATCTTAGA
101157958 AGATATGATTTTGCAATCTT
1 AGATATGA--TTGCAATCTT
101157978 GGAGATTTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
18 9 0.26
19 8 0.24
22 8 0.24
23 8 0.24
24 1 0.03
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (21 bp):
AGATATGATTGCAATCTTAGA
Found at i:101157962 original size:40 final size:36
Alignment explanation
Indices: 101157867--101157977 Score: 107
Period size: 35 Copynumber: 2.9 Consensus size: 36
101157857 ATAATCTTCA
* * * *
101157867 ATGATATGCAATCTTAGATGTGATATGGAATCTTTGAT
1 ATGATAT--AATCTTAGATATGATTTGCAATCTTAGAT
101157905 ATGATATAATCTTAGATATGA-TTGCAATCTTAGAT
1 ATGATATAATCTTAGATATGATTTGCAATCTTAGAT
101157940 ATGATATACAATCTTAGAAGATATGATTTTGCAATCTT
1 ATGATAT--AATCTT---AGATATGA-TTTGCAATCTT
101157978 GGAGATTTAA
Statistics
Matches: 62, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
35 18 0.29
36 13 0.21
37 6 0.10
38 7 0.11
40 8 0.13
42 10 0.16
ACGTcount: A:0.35, C:0.09, G:0.16, T:0.40
Consensus pattern (36 bp):
ATGATATAATCTTAGATATGATTTGCAATCTTAGAT
Found at i:101157983 original size:22 final size:20
Alignment explanation
Indices: 101157867--101157983 Score: 77
Period size: 19 Copynumber: 6.0 Consensus size: 20
101157857 ATAATCTTCA
*
101157867 ATGATATGCAATCTT-AGAT
1 ATGATTTGCAATCTTGAGAT
* * * *
101157886 GTGATATGGAATCTT-TGAT
1 ATGATTTGCAATCTTGAGAT
*
101157905 ATGATAT--AATCTT-AGAT
1 ATGATTTGCAATCTTGAGAT
101157922 ATGA-TTGCAATCTT-AGAT
1 ATGATTTGCAATCTTGAGAT
* *
101157940 ATGATATACAATCTTAGAAGAT
1 ATGATTTGCAATCTT-G-AGAT
101157962 ATGATTTTGCAATCTTGGAGAT
1 ATGA-TTTGCAATCTT-GAGAT
101157984 TTAATTTGTA
Statistics
Matches: 80, Mismatches: 11, Indels: 11
0.78 0.11 0.11
Matches are distributed among these distances:
16 1 0.01
17 13 0.16
18 14 0.17
19 30 0.38
22 12 0.15
23 10 0.12
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38
Consensus pattern (20 bp):
ATGATTTGCAATCTTGAGAT
Found at i:101170480 original size:35 final size:35
Alignment explanation
Indices: 101170415--101170532 Score: 191
Period size: 35 Copynumber: 3.3 Consensus size: 35
101170405 CAATGATATG
* *
101170415 CAATCTTAGATGTGATATGGAATCTTAGATATGATA
1 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
101170451 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
101170486 CAATCTTAGATATGATTGCAATCTTAGATATGATATA
1 CAATCTTAGATATGATTGCAATCTTAGATATG--ATA
101170523 CAATCTTAGA
1 CAATCTTAGA
101170533 AGATATGATT
Statistics
Matches: 78, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
35 50 0.64
36 15 0.19
37 13 0.17
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (35 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATA
Found at i:101176176 original size:30 final size:32
Alignment explanation
Indices: 101176142--101176207 Score: 82
Period size: 33 Copynumber: 2.1 Consensus size: 32
101176132 ATGCAAATTA
101176142 TATTTTTA-TTATATAACAT-TTATTATATTT
1 TATTTTTACTTATATAACATATTATTATATTT
* * *
101176172 TATTTTTACTTTATATTACTTATTATTATTTTT
1 TATTTTTAC-TTATATAACATATTATTATATTT
101176205 TAT
1 TAT
101176208 ATATGTTATG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
30 8 0.27
32 9 0.30
33 13 0.43
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.67
Consensus pattern (32 bp):
TATTTTTACTTATATAACATATTATTATATTT
Found at i:101176466 original size:24 final size:24
Alignment explanation
Indices: 101176439--101176486 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
101176429 AGAAAAACCC
101176439 AATATATT-TTATCATTCTTTTATA
1 AATATATTGTTATCA-TCTTTTATA
* *
101176463 AATATTTTGTTATCATGTTTTATA
1 AATATATTGTTATCATCTTTTATA
101176487 TATTGTATAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 15 0.71
25 6 0.29
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.58
Consensus pattern (24 bp):
AATATATTGTTATCATCTTTTATA
Found at i:101176720 original size:33 final size:33
Alignment explanation
Indices: 101176678--101176747 Score: 122
Period size: 33 Copynumber: 2.1 Consensus size: 33
101176668 TTGTATTACT
*
101176678 CTTTTTTGTATATCATACATTATTTAATTATTA
1 CTTTTTTGTATATCATACATTATTTAATTATGA
*
101176711 CTTTTTTGTATATCATGCATTATTTAATTATGA
1 CTTTTTTGTATATCATACATTATTTAATTATGA
101176744 CTTT
1 CTTT
101176748 GTATGTTTGT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.27, C:0.10, G:0.06, T:0.57
Consensus pattern (33 bp):
CTTTTTTGTATATCATACATTATTTAATTATGA
Found at i:101180314 original size:15 final size:15
Alignment explanation
Indices: 101180278--101180327 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 15
101180268 CGATATCCTT
101180278 TTTGCAT-TCATGCA
1 TTTGCATCTCATGCA
101180292 TTTGCATCTCATAGCA
1 TTTGCATCTCAT-GCA
101180308 TTT-CATCAT-AT-CA
1 TTTGCATC-TCATGCA
101180321 TTTGCAT
1 TTTGCAT
101180328 TCAAAGTTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
13 5 0.16
14 10 0.31
15 10 0.31
16 7 0.22
ACGTcount: A:0.24, C:0.22, G:0.10, T:0.44
Consensus pattern (15 bp):
TTTGCATCTCATGCA
Found at i:101182150 original size:42 final size:42
Alignment explanation
Indices: 101182091--101182173 Score: 157
Period size: 42 Copynumber: 2.0 Consensus size: 42
101182081 TCATATGATT
101182091 CAAAATTGCAAAGAGTTCAAGGCCATGGTACAAGGCCTTATC
1 CAAAATTGCAAAGAGTTCAAGGCCATGGTACAAGGCCTTATC
*
101182133 CAAAATTGCGAAGAGTTCAAGGCCATGGTACAAGGCCTTAT
1 CAAAATTGCAAAGAGTTCAAGGCCATGGTACAAGGCCTTAT
101182174 GGTTAACAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (42 bp):
CAAAATTGCAAAGAGTTCAAGGCCATGGTACAAGGCCTTATC
Found at i:101187692 original size:35 final size:35
Alignment explanation
Indices: 101187653--101187719 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 35
101187643 TATTTAAAAG
101187653 ATGATAATCACAACTTACATAAACAGTTAAAGTTT
1 ATGATAATCACAACTTACATAAACAGTTAAAGTTT
* * *
101187688 ATGATTATCATAACTTACATAAACATTTAAAG
1 ATGATAATCACAACTTACATAAACAGTTAAAG
101187720 AATATAAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.46, C:0.13, G:0.07, T:0.33
Consensus pattern (35 bp):
ATGATAATCACAACTTACATAAACAGTTAAAGTTT
Found at i:101193056 original size:24 final size:24
Alignment explanation
Indices: 101193029--101193076 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
101193019 GCCTTGCCAA
101193029 AATAAAATATTTATATTTCTATTT
1 AATAAAATATTTATATTTCTATTT
101193053 AATAAAATATTTATATTTCTATTT
1 AATAAAATATTTATATTTCTATTT
101193077 TTGAATAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (24 bp):
AATAAAATATTTATATTTCTATTT
Found at i:101194628 original size:89 final size:86
Alignment explanation
Indices: 101194517--101194696 Score: 297
Period size: 89 Copynumber: 2.1 Consensus size: 86
101194507 AAACTGGGCC
* *
101194517 TAAATCAAGAGTTGTTCCTGATTAATTGTTAAATAAAATTATTTCTAAGTAAGACTCTGCATAGG
1 TAAATCAAGAGTTGTTCCTGATTAATTGTTAAATAAAATTATTTCTAAGCAAGACTCCGCATAGG
101194582 TAGGATTGTTAAATTAATCATTGT
66 TAGGATTGTTAAA-T--TCATTGT
* *
101194606 TAAATCAAGAGTTGTTCTTGATTAATTGTTAAATAAAATTATTTCTAAGCAAGGCTCCGCATAGG
1 TAAATCAAGAGTTGTTCCTGATTAATTGTTAAATAAAATTATTTCTAAGCAAGACTCCGCATAGG
101194671 TAGGATTGTTAAATTCATTGT
66 TAGGATTGTTAAATTCATTGT
101194692 TAAAT
1 TAAAT
101194697 TAATCATTAT
Statistics
Matches: 87, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
86 12 0.14
88 1 0.01
89 74 0.85
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.39
Consensus pattern (86 bp):
TAAATCAAGAGTTGTTCCTGATTAATTGTTAAATAAAATTATTTCTAAGCAAGACTCCGCATAGG
TAGGATTGTTAAATTCATTGT
Found at i:101194761 original size:101 final size:101
Alignment explanation
Indices: 101194586--101194798 Score: 363
Period size: 101 Copynumber: 2.1 Consensus size: 101
101194576 CATAGGTAGG
* * * * * *
101194586 ATTGTTAAATTAATCATTGTTAAATCAAGAGTTGTTCTTGATTAATTGTTAAATAAAATTATTTC
1 ATTGTTAAATTAATCATTATTAAATCAAGAATTGTTCCTAACTAATTGTTAAATAAAAATATTTC
*
101194651 TAAGCAAGGCTCCGCATAGGTAGGATTGTTAAATTC
66 TAAGCAAGGCTCCGCATAGGTAGGATTGCTAAATTC
101194687 ATTGTTAAATTAATCATTATTAAATCAAGAATTGTTCCTAACTAATTGTTAAATAAAAATATTTC
1 ATTGTTAAATTAATCATTATTAAATCAAGAATTGTTCCTAACTAATTGTTAAATAAAAATATTTC
101194752 TAAGCAAGGCTCCGCATAGGTAGGATTGCTAAATTC
66 TAAGCAAGGCTCCGCATAGGTAGGATTGCTAAATTC
101194788 ATTGTTAAATT
1 ATTGTTAAATT
101194799 CAAACTGTGT
Statistics
Matches: 105, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
101 105 1.00
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.38
Consensus pattern (101 bp):
ATTGTTAAATTAATCATTATTAAATCAAGAATTGTTCCTAACTAATTGTTAAATAAAAATATTTC
TAAGCAAGGCTCCGCATAGGTAGGATTGCTAAATTC
Found at i:101200715 original size:40 final size:40
Alignment explanation
Indices: 101200655--101200871 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 40
101200645 AAACCAAGTA
* ** *
101200655 CCTTCGGG-CTTA-ACCGGATATAGCCACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
**
101200693 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
101200733 CCTTTGGGACTTAACCCGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
101200773 CCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* *
101200813 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
101200853 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
101200872 TTATCATCCG
Statistics
Matches: 160, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
38 8 0.05
39 5 0.03
40 147 0.92
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:101208729 original size:39 final size:40
Alignment explanation
Indices: 101208672--101208885 Score: 280
Period size: 39 Copynumber: 5.5 Consensus size: 40
101208662 AAACCAAGTA
* * ** *
101208672 CCTTCGGGATTTA-ACCGGATATAGCCACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
**
101208711 CCTTC-GGACTTAGCCCGGATA-AGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
101208749 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
101208789 CCTTC-GGACTTAGCCCGGA-ATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* *
101208828 CCTTCGGGACTTAG-CCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
101208867 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
101208886 TTATCATCCG
Statistics
Matches: 158, Mismatches: 11, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
38 24 0.15
39 102 0.65
40 32 0.20
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:101213987 original size:28 final size:27
Alignment explanation
Indices: 101213930--101214081 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
101213920 TAAATTGTGC
*
101213930 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
101213957 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
101213985 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
101214012 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
101214040 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
101214067 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
101214082 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:101213994 original size:55 final size:55
Alignment explanation
Indices: 101213930--101214081 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
101213920 TAAATTGTGC
*
101213930 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
101213985 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
101214040 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
101214082 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:101222113 original size:28 final size:27
Alignment explanation
Indices: 101222059--101222207 Score: 235
Period size: 27 Copynumber: 5.4 Consensus size: 27
101222049 TAAATTGTGA
*
101222059 ACTAAGTGTGCGAATTGACTATGTAGC
1 ACTAAGTGTGCGAGTTGACTATGTAGC
101222086 ACTAAGTGTGCGAGTTTGACTATGTAGC
1 ACTAAGTGTGCGAG-TTGACTATGTAGC
101222114 ACTAAGTGTGCGAGTTGACTATGTAGC
1 ACTAAGTGTGCGAGTTGACTATGTAGC
*
101222141 ACTAAGTGTGCGAGTTTGATTATGTAGC
1 ACTAAGTGTGCGAG-TTGACTATGTAGC
* *
101222169 ACTAAGTGTGCGAGTTGATTATATAGC
1 ACTAAGTGTGCGAGTTGACTATGTAGC
*
101222196 ACTGAGTGTGCG
1 ACTAAGTGTGCG
101222208 GACTTAATAT
Statistics
Matches: 116, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 63 0.54
28 53 0.46
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (27 bp):
ACTAAGTGTGCGAGTTGACTATGTAGC
Found at i:101222123 original size:55 final size:55
Alignment explanation
Indices: 101222059--101222207 Score: 253
Period size: 55 Copynumber: 2.7 Consensus size: 55
101222049 TAAATTGTGA
*
101222059 ACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGC
1 ACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGC
*
101222114 ACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGC
1 ACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGC
* * *
101222169 ACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 ACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
101222208 GACTTAATAT
Statistics
Matches: 89, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 89 1.00
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (55 bp):
ACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGC
Found at i:101224563 original size:20 final size:21
Alignment explanation
Indices: 101224537--101224582 Score: 85
Period size: 20 Copynumber: 2.2 Consensus size: 21
101224527 ATCAACATCA
101224537 TAAATCAATCAAAATTTATCC
1 TAAATCAATCAAAATTTATCC
101224558 -AAATCAATCAAAATTTATCC
1 TAAATCAATCAAAATTTATCC
101224578 TAAAT
1 TAAAT
101224583 ACTATATGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (21 bp):
TAAATCAATCAAAATTTATCC
Found at i:101237846 original size:17 final size:18
Alignment explanation
Indices: 101237816--101237849 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
101237806 TTTTCTTAAA
101237816 AAAAAAGAAGAAAAAATG
1 AAAAAAGAAGAAAAAATG
*
101237834 AAAAAA-AATAAAAAAT
1 AAAAAAGAAGAAAAAAT
101237850 ATATATACAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.82, C:0.00, G:0.09, T:0.09
Consensus pattern (18 bp):
AAAAAAGAAGAAAAAATG
Found at i:101252032 original size:46 final size:46
Alignment explanation
Indices: 101251979--101252151 Score: 163
Period size: 46 Copynumber: 3.7 Consensus size: 46
101251969 TGGTTGAGTA
*
101251979 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
101252025 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * * *
101252072 TCCGAACTTGTTGAGTTGAGTCCGATTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
101252118 CCCGAGCTCATTGAGTTGAGTTCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
101252152 GGGGCAGGTT
Statistics
Matches: 99, Mismatches: 21, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 56 0.57
47 26 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.32
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:101252137 original size:93 final size:93
Alignment explanation
Indices: 101251978--101252146 Score: 248
Period size: 93 Copynumber: 1.8 Consensus size: 93
101251968 ATGGTTGAGT
* * * *
101251978 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGTTG
101252043 AGTCCGAGTTCGTGAGATGTAACTAGGC
66 AGTCCGAGTTCGTGAGATGTAACTAGGC
* * * * *
101252071 ATCCGAACTTGTTGAGTTGAGTCCGATTTCATTTATGGATGCGAACGCCCGAGCTCATTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGTTG
*
101252136 AGTTCGAGTTC
66 AGTCCGAGTTC
101252147 ACTTAGGGGC
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
93 66 1.00
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.31
Consensus pattern (93 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGTTG
AGTCCGAGTTCGTGAGATGTAACTAGGC
Found at i:101255227 original size:15 final size:15
Alignment explanation
Indices: 101255205--101255239 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
101255195 TTTTGTTTCC
*
101255205 TTTATTTTT-TTATT
1 TTTATTTTTAGTATT
101255219 TTTATTTTTAGTATT
1 TTTATTTTTAGTATT
101255234 TTTATT
1 TTTATT
101255240 ATTATTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (15 bp):
TTTATTTTTAGTATT
Found at i:101257069 original size:24 final size:24
Alignment explanation
Indices: 101257017--101257069 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
101257007 ATGCACATAG
* *
101257017 TTTTATGTGTTTTATTTTTCTTAC
1 TTTTATGTATTTTATGTTTCTTAC
*
101257041 TTTTATGTTATTTTATGTTT-TTAT
1 TTTTATG-TATTTTATGTTTCTTAC
101257065 TTTTA
1 TTTTA
101257070 ATTTTTCGCC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 15 0.60
25 10 0.40
ACGTcount: A:0.15, C:0.04, G:0.08, T:0.74
Consensus pattern (24 bp):
TTTTATGTATTTTATGTTTCTTAC
Found at i:101265318 original size:31 final size:31
Alignment explanation
Indices: 101265280--101265340 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
101265270 CCTTTTCATA
101265280 TTTCATATTTCATAACACTGGGCCGAAGCCC
1 TTTCATATTTCATAACACTGGGCCGAAGCCC
**
101265311 TTTCATATTTCATATTACTGGGCCGAAGCC
1 TTTCATATTTCATAACACTGGGCCGAAGCC
101265341 TTTACTTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.33
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCC
Found at i:101265621 original size:22 final size:23
Alignment explanation
Indices: 101265558--101265675 Score: 211
Period size: 23 Copynumber: 5.1 Consensus size: 23
101265548 CCTAGCCTCT
*
101265558 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
101265581 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
101265605 TTTAATAACT-GGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
101265627 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
101265650 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
101265673 TTT
1 TTT
101265676 TACACTTCCT
Statistics
Matches: 92, Mismatches: 1, Indels: 3
0.96 0.01 0.03
Matches are distributed among these distances:
22 22 0.24
23 48 0.52
24 22 0.24
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:101265640 original size:45 final size:46
Alignment explanation
Indices: 101265558--101265675 Score: 211
Period size: 45 Copynumber: 2.6 Consensus size: 46
101265548 CCTAGCCTCT
*
101265558 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCC
101265605 TTTAATAACT-GGGCATAAGCCCTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCC
101265650 TTTAATAACTGGGGCATAAGCCCTTT
1 TTTAATAACTGGGGCATAAGCCCTTT
101265676 TACACTTCCT
Statistics
Matches: 69, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
45 33 0.48
46 26 0.38
47 10 0.14
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (46 bp):
TTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCC
Found at i:101265741 original size:11 final size:11
Alignment explanation
Indices: 101265725--101265782 Score: 61
Period size: 11 Copynumber: 5.6 Consensus size: 11
101265715 TTTGTGATTT
101265725 ATATCATGTGC
1 ATATCATGTGC
*
101265736 ATATCA--TAC
1 ATATCATGTGC
101265745 ATATCATGTGC
1 ATATCATGTGC
*
101265756 ATATCA--TAC
1 ATATCATGTGC
*
101265765 ATGTCATGTGC
1 ATATCATGTGC
101265776 ATATCAT
1 ATATCAT
101265783 ACATACCATG
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
9 15 0.41
11 22 0.59
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (11 bp):
ATATCATGTGC
Found at i:101265750 original size:20 final size:20
Alignment explanation
Indices: 101265725--101265793 Score: 120
Period size: 20 Copynumber: 3.5 Consensus size: 20
101265715 TTTGTGATTT
101265725 ATATCATGTGCATATCATAC
1 ATATCATGTGCATATCATAC
101265745 ATATCATGTGCATATCATAC
1 ATATCATGTGCATATCATAC
*
101265765 ATGTCATGTGCATATCATAC
1 ATATCATGTGCATATCATAC
*
101265785 ATACCATGT
1 ATATCATGT
101265794 TTATCAAAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
ATATCATGTGCATATCATAC
Found at i:101265862 original size:25 final size:25
Alignment explanation
Indices: 101265830--101265877 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
101265820 ATACATAAAC
* *
101265830 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
101265855 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
101265878 CATGTTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:101268087 original size:46 final size:45
Alignment explanation
Indices: 101268031--101268206 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 45
101268021 TGTTTAGGCA
*
101268031 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
101268077 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
101268124 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
101268170 -CCTGAGCTCGTTGTGTTGAGTCCGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
101268207 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 12, Indels: 16
0.80 0.09 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 3 0.03
46 66 0.60
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:101268188 original size:93 final size:93
Alignment explanation
Indices: 101268025--101268198 Score: 287
Period size: 93 Copynumber: 1.9 Consensus size: 93
101268015 CTAGGATGTT
* *
101268025 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGTCCGAACTCGTTG
1 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTG
101268090 AGTTGAGTCCGAGTTCGAGAGATGTAAC
66 AGTTGAGTCCGAGTTCGAGAGATGTAAC
* *
101268118 TAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTT
1 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTT
*
101268182 GTGTTGAGTCCGAGTTC
65 GAGTTGAGTCCGAGTTC
101268199 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTG
AGTTGAGTCCGAGTTCGAGAGATGTAAC
Found at i:101276187 original size:31 final size:31
Alignment explanation
Indices: 101276149--101276212 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
101276139 CCTTTTCATA
101276149 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
101276180 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
101276211 TT
1 TT
101276213 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:101276478 original size:44 final size:44
Alignment explanation
Indices: 101276427--101276514 Score: 142
Period size: 44 Copynumber: 2.0 Consensus size: 44
101276417 CCTAGCCTCT
101276427 TTTAATAACTGGGGAAAAAGCCCTTTAATAACT-GGGCATAAGCC
1 TTTAATAACT-GGGAAAAAGCCCTTTAATAACTGGGGCATAAGCC
* *
101276471 TTTAATAACTGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 TTTAATAACTGGGAAAAAGCCCTTTAATAACTGGGGCATAAGCC
101276515 CTTTTTACAC
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
43 20 0.49
44 21 0.51
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.26
Consensus pattern (44 bp):
TTTAATAACTGGGAAAAAGCCCTTTAATAACTGGGGCATAAGCC
Found at i:101276497 original size:22 final size:23
Alignment explanation
Indices: 101276427--101276518 Score: 145
Period size: 23 Copynumber: 4.1 Consensus size: 23
101276417 CCTAGCCTCT
* *
101276427 TTTAATAACTGGGGAAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
101276450 TTTAATAACT-GGGCATAAG-CC
1 TTTAATAACTGGGGCATAAGCCC
101276471 TTTAATAACT-GGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
101276493 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
101276516 TTT
1 TTT
101276519 TTACACTTAC
Statistics
Matches: 65, Mismatches: 2, Indels: 4
0.92 0.03 0.06
Matches are distributed among these distances:
21 21 0.32
22 19 0.29
23 25 0.38
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:101276595 original size:20 final size:20
Alignment explanation
Indices: 101276570--101276616 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
101276560 TTGTGATTAC
101276570 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
101276590 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
101276610 ACCATGT
1 ATCATGT
101276617 TTATCAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:101276685 original size:25 final size:25
Alignment explanation
Indices: 101276653--101276700 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
101276643 ATACATAAAC
* *
101276653 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
101276678 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
101276701 CATGTTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:101278901 original size:46 final size:44
Alignment explanation
Indices: 101278844--101278980 Score: 159
Period size: 46 Copynumber: 3.0 Consensus size: 44
101278834 TGTTTGGGGC
*
101278844 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
** * *
101278888 ATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGACAGATGTAACTAG-GC
1 A--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGA
*
101278937 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
101278981 CCACTCTTGA
Statistics
Matches: 76, Mismatches: 10, Indels: 14
0.76 0.10 0.14
Matches are distributed among these distances:
43 1 0.01
44 3 0.04
45 1 0.01
46 34 0.45
47 32 0.42
48 1 0.01
49 3 0.04
50 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (44 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:101281211 original size:14 final size:14
Alignment explanation
Indices: 101281192--101281226 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
101281182 CCTCCTTAAA
101281192 GAAATTTCGGCCTC
1 GAAATTTCGGCCTC
101281206 GAAATTTCGGCCTC
1 GAAATTTCGGCCTC
101281220 GAAATTT
1 GAAATTT
101281227 ACCTAATCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (14 bp):
GAAATTTCGGCCTC
Found at i:101287048 original size:31 final size:31
Alignment explanation
Indices: 101287010--101287073 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
101287000 CCTTTTCATA
101287010 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
101287041 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
101287072 TT
1 TT
101287074 ACTGTAAACA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:101287318 original size:23 final size:23
Alignment explanation
Indices: 101287288--101287381 Score: 163
Period size: 23 Copynumber: 4.1 Consensus size: 23
101287278 CCTAGCCCCT
101287288 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
101287311 TTTAATAACT-GGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
101287333 TATAATAACTAGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
101287356 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
101287379 TTT
1 TTT
101287382 TACACTTCCT
Statistics
Matches: 67, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
22 21 0.31
23 46 0.69
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:101287342 original size:45 final size:46
Alignment explanation
Indices: 101287290--101287379 Score: 164
Period size: 45 Copynumber: 2.0 Consensus size: 46
101287280 TAGCCCCTTT
*
101287290 TAATAACTGGGGCATAAGCCCTTTAATAACT-GGGCATAAGCCCTA
1 TAATAACTAGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTA
101287335 TAATAACTAGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCT
1 TAATAACTAGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCT
101287380 TTTACACTTC
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
45 30 0.70
46 13 0.30
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.24
Consensus pattern (46 bp):
TAATAACTAGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTA
Found at i:101287457 original size:20 final size:20
Alignment explanation
Indices: 101287432--101287478 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
101287422 TTGTGATTAC
101287432 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
101287452 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
101287472 ACCATGT
1 ATCATGT
101287479 TTATCAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:101295390 original size:46 final size:46
Alignment explanation
Indices: 101295219--101295392 Score: 174
Period size: 46 Copynumber: 3.8 Consensus size: 46
101295209 GTTTGGGCAT
* * *
101295219 CCGAACTTGTTGAGTTGAGTCCGAGTTCA-TTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*** * * * *
101295264 CCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-AC-TAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGAACGC
*
101295309 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
101295357 CCGATCTCTTTCAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
101295393 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 19, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
45 29 0.28
46 40 0.38
47 32 0.31
48 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:101299714 original size:24 final size:24
Alignment explanation
Indices: 101299669--101299714 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
101299659 ATAGAAATTG
*
101299669 AATTAAATGGTTAATGAGATATCT
1 AATTAAATGCTTAATGAGATATCT
*
101299693 AATTAAAT-CTTATTGAGTATAT
1 AATTAAATGCTTAATGAG-ATAT
101299715 TTTCATAGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 7 0.37
24 12 0.63
ACGTcount: A:0.41, C:0.04, G:0.13, T:0.41
Consensus pattern (24 bp):
AATTAAATGCTTAATGAGATATCT
Found at i:101300812 original size:42 final size:42
Alignment explanation
Indices: 101300704--101300812 Score: 112
Period size: 43 Copynumber: 2.6 Consensus size: 42
101300694 ATACCAATTG
* * **
101300704 CATATCCCAGATATGGTCTTACATGGGATCTTGTATCGATGC
1 CATATCCCAGATATGGTCTTACACGAGATCTCATATCGATGC
** * * *
101300746 CAATAGGCTAGCTATGGTCTTACACGA-AGTCTCATATTGATGC
1 C-ATATCCCAGATATGGTCTTACACGAGA-TCTCATATCGATGC
101300789 CATATCCCAGATATGGTCTTACAC
1 CATATCCCAGATATGGTCTTACAC
101300813 ATAGTCTTAG
Statistics
Matches: 52, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
42 21 0.40
43 31 0.60
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACACGAGATCTCATATCGATGC
Found at i:101302050 original size:17 final size:17
Alignment explanation
Indices: 101302028--101302063 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
101302018 AATAAGTACA
101302028 TAGAGTTGTCGAACTTG
1 TAGAGTTGTCGAACTTG
101302045 TAGAGTTGTCGAACTTG
1 TAGAGTTGTCGAACTTG
101302062 TA
1 TA
101302064 AAATTCGAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.25, C:0.11, G:0.28, T:0.36
Consensus pattern (17 bp):
TAGAGTTGTCGAACTTG
Found at i:101319093 original size:95 final size:92
Alignment explanation
Indices: 101318917--101319343 Score: 285
Period size: 95 Copynumber: 4.5 Consensus size: 92
101318907 TTTACAAAAC
* * * * * * *
101318917 TTAGATAAGTGCCTTAAATGGCTTAACATTGTATCTAGTATTAGACTTAGTGAGCAATTTCCTCT
1 TTAGCTAAGTGCCTTAAA-GGCTTAGCAGTATATCTATTATTAGACTTAGTGAGTAGTTTCCTCT
* * *
101318982 CAGGGTGTCTGCTTTATAACTTCATTGAAT
65 -AGAGTATCTACTTTATAACTT-ATTGAAT
* *
101319012 TTAGCTAAGTGCCCTAATAGGCTTAGCAGTATATCTATTATTAGAATTAGTGAGTAGTTTCCTCT
1 TTAGCTAAGTGCCTTAA-AGGCTTAGCAGTATATCTATTATTAGACTTAGTGAGTAGTTTCCTCT
* * *
101319077 AAAAGTATCTATTTTATAA-ATATTGAATT
65 -AGAGTATCTACTTTATAACTTATTGAA-T
* * * *
101319106 TTGGCTAAGTGCCTTAAAAGGC-TAGAAGTA-ATTCT-TCTATTACACTTAGTGATTAGTTTCTT
1 TTAGCTAAGTGCCTT-AAAGGCTTAGCAGTATA-TCTAT-TATTAGACTTAGTGAGTAGTTTC--
* *
101319168 CTCTCGA-TATCTACTTTATAACTTTGTTGAAT
61 CTCTAGAGTATCTACTTTATAAC-TTATTGAAT
* * * ** * ** *
101319200 TTAGCTACA-TGTCTTAAGAGGCTTAGCAATATATTTGCTATTAGACTTAATGAACAATTTCCTC
1 TTAGCTA-AGTGCCTTAA-AGGCTTAGCAGTATATCTATTATTAGACTTAGTGAGTAGTTTCCTC
* * * * * *
101319264 TCGAATTGTCTGCTCTATAGA--TATTGATTT
64 TAG-AGTATCTACTTTATA-ACTTATTGA-AT
* * *
101319294 TTGGCTAAGTGCCTTAAAAGGCTTAGCAGTATATCTACTATTAGATTTAG
1 TTAGCTAAGTGCCTT-AAAGGCTTAGCAGTATATCTATTATTAGACTTAG
101319344 CGAGCCTAAA
Statistics
Matches: 262, Mismatches: 50, Indels: 41
0.74 0.14 0.12
Matches are distributed among these distances:
92 2 0.01
93 63 0.24
94 76 0.29
95 118 0.45
96 3 0.01
ACGTcount: A:0.29, C:0.15, G:0.16, T:0.40
Consensus pattern (92 bp):
TTAGCTAAGTGCCTTAAAGGCTTAGCAGTATATCTATTATTAGACTTAGTGAGTAGTTTCCTCTA
GAGTATCTACTTTATAACTTATTGAAT
Found at i:101320462 original size:41 final size:41
Alignment explanation
Indices: 101320396--101320475 Score: 108
Period size: 41 Copynumber: 2.0 Consensus size: 41
101320386 GGAGATTAAT
* * *
101320396 AGTTTTCTCTAGGAGTTAATCAATCTTCCCTAGGAGTTACG
1 AGTTTTCCCTAGAAGTTAATCAATCTTCCATAGGAGTTACG
*
101320437 AGTTTTCCCTAGAAGTTTAAT-AATCTTTCATAGGAGTTA
1 AGTTTTCCCTAGAAG-TTAATCAATCTTCCATAGGAGTTA
101320476 GCAACTTTCC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 29 0.85
42 5 0.15
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39
Consensus pattern (41 bp):
AGTTTTCCCTAGAAGTTAATCAATCTTCCATAGGAGTTACG
Found at i:101320492 original size:20 final size:20
Alignment explanation
Indices: 101320467--101320509 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
101320457 TAATCTTTCA
* * *
101320467 TAGGAGTTAGCAACTTTCCC
1 TAGGAGTCAACAACATTCCC
101320487 TAGGAGTCAACAACATTCCC
1 TAGGAGTCAACAACATTCCC
101320507 TAG
1 TAG
101320510 ATGTGGCGCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (20 bp):
TAGGAGTCAACAACATTCCC
Found at i:101322911 original size:46 final size:46
Alignment explanation
Indices: 101322760--101322927 Score: 160
Period size: 46 Copynumber: 3.6 Consensus size: 46
101322750 TTTGTCTGCT
* * *
101322760 AGTGTAAGACATGTCTAGGACATGCATCAGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCGA-GATGAGAGCC
* * * * * ** *
101322806 AGTGAAAGACCATGTCTGGGACATGGCATTGGCATTGAGACAAGAGCT
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCGAGATGAGAGCC
*
101322854 AGTGTAAGACATGTTTAGGACATGCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATG-AGAGCC
* *
101322900 AGTGTAAGACATGTTTGGGACATGCATC
1 AGTGTAAGACATGTCTAGGACATGCATC
101322928 AGTTACGAGA
Statistics
Matches: 97, Mismatches: 21, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
46 50 0.52
47 26 0.27
48 20 0.21
49 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATGAGAGCC
Found at i:101322937 original size:46 final size:44
Alignment explanation
Indices: 101322854--101322968 Score: 142
Period size: 46 Copynumber: 2.5 Consensus size: 44
101322844 GACAAGAGCT
* *
101322854 AGTGTAAGACATGTTTAGGACATGCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACATGTTTGGGACATGCATCAGCCTCGAGATGT--GCC
* *
101322900 AGTGTAAGACATGTTTGGGACATGCATCAG-TTACGAGATGTGTC
1 AGTGTAAGACATGTTTGGGACATGCATCAGCCT-CGAGATGTGCC
*
101322944 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTTTGGGACATG
101322969 GCATTGGCAT
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
44 11 0.18
45 15 0.24
46 36 0.58
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.26
Consensus pattern (44 bp):
AGTGTAAGACATGTTTGGGACATGCATCAGCCTCGAGATGTGCC
Found at i:101324132 original size:29 final size:28
Alignment explanation
Indices: 101324077--101324132 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
101324067 CACGGCCTGA
*
101324077 GACACGGGCATGTCGAGGCCGTGTGAAG
1 GACACGGGCATGTCCAGGCCGTGTGAAG
* *
101324105 GACACGGGCGTGTGCCAGGCCGTTTGAA
1 GACACGGGCATGT-CCAGGCCGTGTGAA
101324133 AACCCCTGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 12 0.50
29 12 0.50
ACGTcount: A:0.20, C:0.23, G:0.41, T:0.16
Consensus pattern (28 bp):
GACACGGGCATGTCCAGGCCGTGTGAAG
Found at i:101332781 original size:24 final size:25
Alignment explanation
Indices: 101332754--101332801 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
101332744 CATTTGGATA
*
101332754 AAATAATTCAAT-AAATTTAAAATC
1 AAATAATTAAATCAAATTTAAAATC
*
101332778 AAATCATTAAATCAAATTTAAAAT
1 AAATAATTAAATCAAATTTAAAAT
101332802 TTAAGAGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 10 0.48
25 11 0.52
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.33
Consensus pattern (25 bp):
AAATAATTAAATCAAATTTAAAATC
Found at i:101338780 original size:19 final size:19
Alignment explanation
Indices: 101338756--101338794 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
101338746 ATTTGAAAGA
*
101338756 ATCGCTCATATTCATAAAC
1 ATCGCTCACATTCATAAAC
*
101338775 ATCGCTCACCTTCATAAAC
1 ATCGCTCACATTCATAAAC
101338794 A
1 A
101338795 ATCTTCAGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.36, C:0.31, G:0.05, T:0.28
Consensus pattern (19 bp):
ATCGCTCACATTCATAAAC
Found at i:101345799 original size:28 final size:28
Alignment explanation
Indices: 101345759--101345822 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
101345749 TGTACTAGAG
*
101345759 TACCCCTATGTATGCAAAATTACCAT-TA
1 TACCCCTATGTATGCAAAATGACC-TCTA
101345787 TACCCCTATGTATGCAAAATGACCTCTA
1 TACCCCTATGTATGCAAAATGACCTCTA
101345815 TACCCCTA
1 TACCCCTA
101345823 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 33 0.97
ACGTcount: A:0.33, C:0.30, G:0.08, T:0.30
Consensus pattern (28 bp):
TACCCCTATGTATGCAAAATGACCTCTA
Found at i:101345969 original size:28 final size:27
Alignment explanation
Indices: 101345928--101346017 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 27
101345918 AGGAAGCGTC
101345928 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
101345956 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
*
101345983 CTAGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
101346012 CTGGTG
1 CTGGTG
101346018 ACTCTGTCAC
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
27 22 0.42
28 25 0.47
29 6 0.11
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:101345989 original size:27 final size:27
Alignment explanation
Indices: 101345938--101346009 Score: 99
Period size: 27 Copynumber: 2.6 Consensus size: 27
101345928 CTGGTGGCTA
* *
101345938 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAA-TATCTGTTCTAGTGGCAC
*
101345966 TGCCACATATATCTGTTCTAGTGGCAC
1 TGCCACAAATATCTGTTCTAGTGGCAC
101345993 TGCCACAAAATATCTGT
1 TGCCAC-AAATATCTGT
101346010 ATCTGGTGAC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 22 0.56
28 17 0.44
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (27 bp):
TGCCACAAATATCTGTTCTAGTGGCAC
Found at i:101359621 original size:24 final size:26
Alignment explanation
Indices: 101359574--101359621 Score: 64
Period size: 24 Copynumber: 1.9 Consensus size: 26
101359564 TACCCAAGCC
* *
101359574 TAGCCCAACACTTTTCCTTCTTTTGG
1 TAGCCCAACACTTTTCCATATTTTGG
101359600 TAGCCC-ACA-TTTTCCATATTTT
1 TAGCCCAACACTTTTCCATATTTT
101359622 TCTCATTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 11 0.55
25 3 0.15
26 6 0.30
ACGTcount: A:0.19, C:0.29, G:0.08, T:0.44
Consensus pattern (26 bp):
TAGCCCAACACTTTTCCATATTTTGG
Found at i:101362950 original size:46 final size:45
Alignment explanation
Indices: 101362900--101363075 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
101362890 TGGTTGAGCA
101362900 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
101362946 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
101362993 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
101363039 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
101363076 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:101363056 original size:93 final size:93
Alignment explanation
Indices: 101362897--101363067 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
101362887 GGATGGTTGA
* * *
101362897 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
101362962 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
101362990 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
101363055 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
101363068 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:101369741 original size:23 final size:23
Alignment explanation
Indices: 101369715--101369758 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
101369705 CATGCTAATA
101369715 ATAAATGCAATC-ATTATGCATTC
1 ATAAAT-CAATCAATTATGCATTC
*
101369738 ATAAATCATTCAATTATGCAT
1 ATAAATCAATCAATTATGCAT
101369759 ATTAGGGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.41, C:0.16, G:0.07, T:0.36
Consensus pattern (23 bp):
ATAAATCAATCAATTATGCATTC
Found at i:101374393 original size:23 final size:24
Alignment explanation
Indices: 101374317--101374409 Score: 82
Period size: 24 Copynumber: 3.8 Consensus size: 24
101374307 GACTCACCAT
* * *
101374317 AGCTCGTATGAGCTTACCGATATATC
1 AGCTCGTAAGAGCTTACTG-T-TTTC
101374343 AGCTCGTAAGAGCTTACTGTTTTC
1 AGCTCGTAAGAGCTTACTGTTTTC
* * *
101374367 AGCTCGTTAGATCTTATTG-TTTC
1 AGCTCGTAAGAGCTTACTGTTTTC
*
101374390 AGCTC-AATAGAGCTTACTGT
1 AGCTCGTA-AGAGCTTACTGT
101374410 CCATCAGCTC
Statistics
Matches: 55, Mismatches: 10, Indels: 6
0.77 0.14 0.08
Matches are distributed among these distances:
23 18 0.33
24 19 0.35
25 1 0.02
26 17 0.31
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (24 bp):
AGCTCGTAAGAGCTTACTGTTTTC
Found at i:101376355 original size:36 final size:36
Alignment explanation
Indices: 101376315--101376386 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
101376305 GCAAATCATG
*
101376315 CCATACATACAACCAATCTCAAACCAAATAACACAA
1 CCATACATACAACCAATATCAAACCAAATAACACAA
*
101376351 CCATACATACAACCAATATCATACCAAATAACACAA
1 CCATACATACAACCAATATCAAACCAAATAACACAA
101376387 TCATGCATCA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.53, C:0.32, G:0.00, T:0.15
Consensus pattern (36 bp):
CCATACATACAACCAATATCAAACCAAATAACACAA
Found at i:101385129 original size:13 final size:13
Alignment explanation
Indices: 101385111--101385137 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
101385101 GCTCGACAGG
101385111 GACACGCCCGTGT
1 GACACGCCCGTGT
101385124 GACACGCCCGTGT
1 GACACGCCCGTGT
101385137 G
1 G
101385138 CGATTACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:101391455 original size:27 final size:27
Alignment explanation
Indices: 101391388--101391480 Score: 96
Period size: 27 Copynumber: 3.4 Consensus size: 27
101391378 TCACCATAAG
* * *
101391388 GGCTATCCTTTCAAAAATAACCAAAAA
1 GGCTATCCTTTCATAATTAACCACAAA
* *
101391415 GGTTATCCTTTCATAATTTACCACAAA
1 GGCTATCCTTTCATAATTAACCACAAA
* ***
101391442 GGCTATTCTTTCATAATTCGTCACAAA
1 GGCTATCCTTTCATAATTAACCACAAA
*
101391469 GGCTATTCTTTC
1 GGCTATCCTTTC
101391481 CTGTCATATT
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.33, C:0.23, G:0.10, T:0.34
Consensus pattern (27 bp):
GGCTATCCTTTCATAATTAACCACAAA
Found at i:101405345 original size:11 final size:11
Alignment explanation
Indices: 101405329--101405354 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
101405319 TTCAGAATAC
101405329 CCACCTTATTG
1 CCACCTTATTG
101405340 CCACCTTATTG
1 CCACCTTATTG
101405351 CCAC
1 CCAC
101405355 AACATGGAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.42, G:0.08, T:0.31
Consensus pattern (11 bp):
CCACCTTATTG
Found at i:101409936 original size:42 final size:42
Alignment explanation
Indices: 101409890--101410034 Score: 118
Period size: 42 Copynumber: 3.4 Consensus size: 42
101409880 AATTACGTGT
101409890 AAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTTGTAA
1 AAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTTGTAA
* * * ** * *
101409932 AAGACCCTATCTAGGACAGAGGCAAT-G-ATACTGAAATATGTGT-A
1 AAGACCATGTCTGGGACATCGGC-ATCGTAT-CTG---TTTTTGTAA
* **
101409976 AA-ACCATGTCTGGGACATCGGCATCGTATCTATTTTCATAA
1 AAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTTGTAA
*
101410017 AAGACCCTGTCTGGGACA
1 AAGACCATGTCTGGGACA
101410035 GAGGCAACGA
Statistics
Matches: 76, Mismatches: 18, Indels: 18
0.68 0.16 0.16
Matches are distributed among these distances:
40 3 0.04
41 5 0.07
42 38 0.50
43 20 0.26
44 5 0.07
45 5 0.07
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (42 bp):
AAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTTGTAA
Found at i:101410002 original size:85 final size:85
Alignment explanation
Indices: 101409883--101410329 Score: 603
Period size: 85 Copynumber: 5.3 Consensus size: 85
101409873 TGATCTAAAT
* *
101409883 TACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTTGTAAAAGACCCTATCTAGGA
1 TACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTCGTAAAAGACCCTGTCTAGGA
101409948 CAGAGGCAATGATACTGAAA
66 CAGAGGCAATGATACTGAAA
* * * * *
101409968 TATGTGTAAAACCATGTCTGGGACATCGGCATCGTATCTATTTTCATAAAAGACCCTGTCTGGGA
1 TACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTCGTAAAAGACCCTGTCTAGGA
*
101410033 CAGAGGCAACGATACTGAAA
66 CAGAGGCAATGATACTGAAA
* * * * * *
101410053 TACGTGTAAGACCATGTCTGGGATATCGACATTGTATCAG-TTTCGTAAAAGCCCCTATCTAGGA
1 TACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTCGTAAAAGACCCTGTCTAGGA
* *
101410117 CAGA-GCAACGATACTAAAA
66 CAGAGGCAATGATACTGAAA
* * * *
101410136 TAAGTGTAAGACCATGTCTGGGACATCGACATCGTATCTATTTTCGTAAAAGACCCTGTCTGGGA
1 TACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTCGTAAAAGACCCTGTCTAGGA
* *
101410201 TACAGGCAATGATACTGAAA
66 CAGAGGCAATGATACTGAAA
* * * * *
101410221 TACGTGTAAGACCATGTTTGGGACATCGGTATCGTATCTGTATTCGTATAAGACCCTGTCTATGA
1 TACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTCGTAAAAGACCCTGTCTAGGA
*
101410286 CAGAGGC-ATCGATACTGAAT
66 CAGAGGCAAT-GATACTGAAA
*
101410306 TACATGTAAGACCATGTCTGGGAC
1 TACGTGTAAGACCATGTCTGGGAC
101410330 GTCAGCATTG
Statistics
Matches: 313, Mismatches: 46, Indels: 6
0.86 0.13 0.02
Matches are distributed among these distances:
83 49 0.16
84 49 0.16
85 215 0.69
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (85 bp):
TACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTCGTAAAAGACCCTGTCTAGGA
CAGAGGCAATGATACTGAAA
Found at i:101410171 original size:168 final size:169
Alignment explanation
Indices: 101409883--101410329 Score: 655
Period size: 168 Copynumber: 2.6 Consensus size: 169
101409873 TGATCTAAAT
*
101409883 TACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTTGTAAAAGACCCTATCTAGGA
1 TACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTG-TTTCGTAAAAGACCCTATCTAGGA
* * * *
101409948 CAGAGGCAATGATACTGAAATATGTGTAAAACCATGTCTGGGACATCGGCATCGTATCTATTTTC
65 CAGAGGCAACGATACTGAAATAAGTGTAAGACCATGTCTGGGACATCGACATCGTATCTATTTTC
*
101410013 ATAAAAGACCCTGTCTGGGACAGAGGCAACGATACTGAAA
130 ATAAAAGACCCTGTCTGGGACACAGGCAACGATACTGAAA
* * * * *
101410053 TACGTGTAAGACCATGTCTGGGATATCGACATTGTATCAGTTTCGTAAAAGCCCCTATCTAGGAC
1 TACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGTTTCGTAAAAGACCCTATCTAGGAC
* *
101410118 AGA-GCAACGATACTAAAATAAGTGTAAGACCATGTCTGGGACATCGACATCGTATCTATTTTCG
66 AGAGGCAACGATACTGAAATAAGTGTAAGACCATGTCTGGGACATCGACATCGTATCTATTTTCA
* *
101410182 TAAAAGACCCTGTCTGGGATACAGGCAATGATACTGAAA
131 TAAAAGACCCTGTCTGGGACACAGGCAACGATACTGAAA
* * * * *
101410221 TACGTGTAAGACCATGTTTGGGACATCGGTATCGTATCTGTATTCGTATAAGACCCTGTCTATGA
1 TACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGT-TTCGTAAAAGACCCTATCTAGGA
* *
101410286 CAGAGGCATCGATACTGAATTACA-TGTAAGACCATGTCTGGGAC
65 CAGAGGCAACGATACTGAAATA-AGTGTAAGACCATGTCTGGGAC
101410330 GTCAGCATTG
Statistics
Matches: 246, Mismatches: 28, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
168 126 0.51
169 49 0.20
170 70 0.28
171 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (169 bp):
TACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGTTTCGTAAAAGACCCTATCTAGGAC
AGAGGCAACGATACTGAAATAAGTGTAAGACCATGTCTGGGACATCGACATCGTATCTATTTTCA
TAAAAGACCCTGTCTGGGACACAGGCAACGATACTGAAA
Found at i:101410190 original size:42 final size:42
Alignment explanation
Indices: 101409978--101410200 Score: 123
Period size: 42 Copynumber: 5.3 Consensus size: 42
101409968 TATGTGTAAA
* * *
101409978 ACCATGTCTGGGACATCGGCATCGTATCTATTTTCATAAAAG
1 ACCATGTCTGGGACATCGACATCGTATCTAATTTCGTAAAAG
* ** * * * * **
101410020 ACCCTGTCTGGGACAGAGGCAACG-ATACTGAAATACGTGTAAG
1 ACCATGTCTGGGACATCGACATCGTAT-CT-AATTTCGTAAAAG
* * *
101410063 ACCATGTCTGGGATATCGACATTGTATC-AGTTTCGTAAAAG
1 ACCATGTCTGGGACATCGACATCGTATCTAATTTCGTAAAAG
* * * * * * ** **
101410104 CCCCTATCTAGGACA--GAGCAACG-ATACTAAAATAAGTGTAAG
1 ACCATGTCTGGGACATCGA-CATCGTAT-CT-AATTTCGTAAAAG
*
101410146 ACCATGTCTGGGACATCGACATCGTATCTATTTTCGTAAAAG
1 ACCATGTCTGGGACATCGACATCGTATCTAATTTCGTAAAAG
*
101410188 ACCCTGTCTGGGA
1 ACCATGTCTGGGA
101410201 TACAGGCAAT
Statistics
Matches: 124, Mismatches: 47, Indels: 20
0.65 0.25 0.10
Matches are distributed among these distances:
39 4 0.03
40 4 0.03
41 20 0.16
42 59 0.48
43 31 0.25
44 6 0.05
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (42 bp):
ACCATGTCTGGGACATCGACATCGTATCTAATTTCGTAAAAG
Found at i:101410870 original size:12 final size:13
Alignment explanation
Indices: 101410853--101410884 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
101410843 GCAAATGTTA
101410853 AGTTTTG-TGCAT
1 AGTTTTGATGCAT
101410865 AGTTTTGATGCAT
1 AGTTTTGATGCAT
101410878 -GTTTTGA
1 AGTTTTGA
101410885 AATGTGTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.19, C:0.06, G:0.25, T:0.50
Consensus pattern (13 bp):
AGTTTTGATGCAT
Found at i:101411279 original size:20 final size:20
Alignment explanation
Indices: 101411236--101411279 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
101411226 TGACTTTGTC
* *
101411236 AGTTTTGAAAAGTTTGATTA
1 AGTTCTGAAAAGTTTGAATA
* *
101411256 AGTTCTGAAAATTTTGAATG
1 AGTTCTGAAAAGTTTGAATA
101411276 AGTT
1 AGTT
101411280 TGGTTTAATC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.34, C:0.02, G:0.20, T:0.43
Consensus pattern (20 bp):
AGTTCTGAAAAGTTTGAATA
Found at i:101414082 original size:17 final size:17
Alignment explanation
Indices: 101414060--101414093 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
101414050 TACGACAGAG
*
101414060 AAGATGGTTAGAACTGT
1 AAGATGGTCAGAACTGT
101414077 AAGATGGTCAGAACTGT
1 AAGATGGTCAGAACTGT
101414094 TAAAAGACTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.09, G:0.29, T:0.26
Consensus pattern (17 bp):
AAGATGGTCAGAACTGT
Found at i:101416976 original size:85 final size:85
Alignment explanation
Indices: 101416827--101417346 Score: 758
Period size: 85 Copynumber: 6.1 Consensus size: 85
101416817 TGATCTAAAT
* * * * * *
101416827 TACGTGTAAGATCATGTCTGGGACATTGGCATCGTATATGTTTTTGTAAAAGACCCTATCTGGGA
1 TACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTCGTAAAAGACCCTGTCTAGGA
101416892 CAGAGGCAACGATACTGAAA
66 CAGAGGCAACGATACTGAAA
* *
101416912 TACGTGTAAGACCATGTCTGGG--ATGCTGGCATCGTATCTGTTTTCGTAAAAGACCCTGTTTGG
1 TACGTGTAAGACCATGTCTGGGACAT-C-GGCATCGTATCTGTTTTCGTAAAAGACCCTGTCTAG
101416975 GACAGAGGCAACGATACTGAAA
64 GACAGAGGCAACGATACTGAAA
* * *
101416997 TACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTATTTTCATAAAAGACCCTGTCTGGGA
1 TACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTCGTAAAAGACCCTGTCTAGGA
*
101417062 CAGAGGCAACGATACTGAAG
66 CAGAGGCAACGATACTGAAA
* *
101417082 TACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTCGTAAAAGCCCCTATCTAGGA
1 TACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTCGTAAAAGACCCTGTCTAGGA
*
101417147 CAGA-GCAACGATACTAAAA
66 CAGAGGCAACGATACTGAAA
* *
101417166 TACGTGTAAGACCATGTCTGGGACATCGACATCGTATCTATTTTCGTAAAAGACCCTGTCTAGGA
1 TACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTCGTAAAAGACCCTGTCTAGGA
* * *
101417231 TACAGGCAATGATACTGAAA
66 CAGAGGCAACGATACTGAAA
* * * *
101417251 TACGTGTAAGACCATGTCTGGGACATCGGTATCGTATCTGTATTCGTATAAGACCCTGTCTATGA
1 TACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTCGTAAAAGACCCTGTCTAGGA
* *
101417316 CAGAGGCATCGATACTGAAT
66 CAGAGGCAACGATACTGAAA
*
101417336 TACATGTAAGA
1 TACGTGTAAGA
101417347 TTGGAACCAT
Statistics
Matches: 393, Mismatches: 37, Indels: 10
0.89 0.08 0.02
Matches are distributed among these distances:
83 2 0.01
84 76 0.19
85 312 0.79
86 1 0.00
87 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.27
Consensus pattern (85 bp):
TACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTCGTAAAAGACCCTGTCTAGGA
CAGAGGCAACGATACTGAAA
Found at i:101417057 original size:42 final size:42
Alignment explanation
Indices: 101416834--101417311 Score: 195
Period size: 42 Copynumber: 11.3 Consensus size: 42
101416824 AATTACGTGT
* * * * *
101416834 AAGATCATGTCTGGGACATTGGCATCGTATATGTTTTTGTAA
1 AAGACCATGTCTGGGACATCGGCATCGTATCTATTTTCGTAA
* * ** * ** * **
101416876 AAGACCCTATCTGGGACAGAGGCAACG-ATACTGAAATACGTGT
1 AAGACCATGTCTGGGACATCGGCATCGTAT-CT-ATTTTCGTAA
*
101416919 AAGACCATGTCTGGG--ATGCTGGCATCGTATCTGTTTTCGTAA
1 AAGACCATGTCTGGGACAT-C-GGCATCGTATCTATTTTCGTAA
* * ** * ** * **
101416961 AAGACCCTGTTTGGGACAGAGGCAACG-ATACTGAAATACGTGT
1 AAGACCATGTCTGGGACATCGGCATCGTAT-CT-ATTTTCGTAA
*
101417004 AAGACCATGTCTGGGACATCGGCATCGTATCTATTTTCATAA
1 AAGACCATGTCTGGGACATCGGCATCGTATCTATTTTCGTAA
* ** * ** * **
101417046 AAGACCCTGTCTGGGACAGAGGCAACG-ATACTGAAGTACGTGT
1 AAGACCATGTCTGGGACATCGGCATCGTAT-CT-ATTTTCGTAA
*
101417089 AAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTCGTAA
1 AAGACCATGTCTGGGACATCGGCATCGTATCTATTTTCGTAA
* * * * * ** * **
101417131 AAGCCCCTATCTAGGACA--GAGCAACG-ATACTAAAATACGTGT
1 AAGACCATGTCTGGGACATCG-GCATCGTAT-CT-ATTTTCGTAA
*
101417173 AAGACCATGTCTGGGACATCGACATCGTATCTATTTTCGTAA
1 AAGACCATGTCTGGGACATCGGCATCGTATCTATTTTCGTAA
* * * ** * **
101417215 AAGACCCTGTCTAGGATA-CAGGCAAT-G-ATACTGAAATACGTGT
1 AAGACCATGTCTGGGACATC-GGC-ATCGTAT-CT-ATTTTCGTAA
* * * *
101417258 AAGACCATGTCTGGGACATCGGTATCGTATCTGTATTCGTAT
1 AAGACCATGTCTGGGACATCGGCATCGTATCTATTTTCGTAA
*
101417300 AAGACCCTGTCT
1 AAGACCATGTCT
101417312 ATGACAGAGG
Statistics
Matches: 303, Mismatches: 107, Indels: 52
0.66 0.23 0.11
Matches are distributed among these distances:
40 3 0.01
41 17 0.06
42 156 0.51
43 114 0.38
44 13 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (42 bp):
AAGACCATGTCTGGGACATCGGCATCGTATCTATTTTCGTAA
Found at i:101417277 original size:254 final size:255
Alignment explanation
Indices: 101416827--101417346 Score: 785
Period size: 254 Copynumber: 2.0 Consensus size: 255
101416817 TGATCTAAAT
* * * *
101416827 TACGTGTAAGATCATGTCTGGGACATTGGCATCGTATATGTTTTTGTAAAAGACCCTATCTGGGA
1 TACGTGTAAGACCATGTCTGGGACATCGGCATCGTATATGTTTTCGTAAAAGACCCTATCTAGGA
* * *
101416892 CAGAGGCAACGATACTGAAATACGTGTAAGACCATGTCTGGGATGCTGGCATCGTATCTGTTTTC
66 CAGAGGCAACGATACTAAAATACGTGTAAGACCATGTCTGGGATGCTGACATCGTATCTATTTTC
* * *
101416957 GTAAAAGACCCTGTTTGGGACAGAGGCAACGATACTGAAATACGTGTAAGACCATGTCTGGGACA
131 GTAAAAGACCCTGTCTAGGACACAGGCAACGATACTGAAATACGTGTAAGACCATGTCTGGGACA
* *
101417022 TCGGCATCGTATCTATTTTCATAAAAGACCCTGTCTGGGACAGAGGCAACGATACTGAAG
196 TCGGCATCGTATCTATATTCATAAAAGACCCTGTCTAGGACAGAGGCAACGATACTGAAG
* *
101417082 TACGTGTAAGACCATGTCTGGGACATCGGCATCGTATCTGTTTTCGTAAAAGCCCCTATCTAGGA
1 TACGTGTAAGACCATGTCTGGGACATCGGCATCGTATATGTTTTCGTAAAAGACCCTATCTAGGA
101417147 CAGA-GCAACGATACTAAAATACGTGTAAGACCATGTCTGGGA--CATCGACATCGTATCTATTT
66 CAGAGGCAACGATACTAAAATACGTGTAAGACCATGTCTGGGATGC-T-GACATCGTATCTATTT
* *
101417209 TCGTAAAAGACCCTGTCTAGGATACAGGCAATGATACTGAAATACGTGTAAGACCATGTCTGGGA
129 TCGTAAAAGACCCTGTCTAGGACACAGGCAACGATACTGAAATACGTGTAAGACCATGTCTGGGA
* * * * * * *
101417274 CATCGGTATCGTATCTGTATTCGTATAAGACCCTGTCTATGACAGAGGCATCGATACTGAAT
194 CATCGGCATCGTATCTATATTCATAAAAGACCCTGTCTAGGACAGAGGCAACGATACTGAAG
*
101417336 TACATGTAAGA
1 TACGTGTAAGA
101417347 TTGGAACCAT
Statistics
Matches: 239, Mismatches: 24, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
252 1 0.00
253 1 0.00
254 174 0.73
255 63 0.26
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.27
Consensus pattern (255 bp):
TACGTGTAAGACCATGTCTGGGACATCGGCATCGTATATGTTTTCGTAAAAGACCCTATCTAGGA
CAGAGGCAACGATACTAAAATACGTGTAAGACCATGTCTGGGATGCTGACATCGTATCTATTTTC
GTAAAAGACCCTGTCTAGGACACAGGCAACGATACTGAAATACGTGTAAGACCATGTCTGGGACA
TCGGCATCGTATCTATATTCATAAAAGACCCTGTCTAGGACAGAGGCAACGATACTGAAG
Found at i:101417640 original size:20 final size:20
Alignment explanation
Indices: 101417597--101417641 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
101417587 TGACTTTGTC
* *
101417597 AGTTTTGAAAAGTTTGATTA
1 AGTTCTGAAAAGTTTGAATA
* *
101417617 AGTTCTGAAAATTTTGAATG
1 AGTTCTGAAAAGTTTGAATA
101417637 AGTTC
1 AGTTC
101417642 AGTTTAATCC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.33, C:0.04, G:0.20, T:0.42
Consensus pattern (20 bp):
AGTTCTGAAAAGTTTGAATA
Found at i:101419217 original size:40 final size:40
Alignment explanation
Indices: 101418986--101419210 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
101418976 TTGAATGATG
* * * *
101418986 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
101419026 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
101419066 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
101419105 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
101419145 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
101419186 -CCGGGCTATGTCCCAAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
101419211 AACGAGTAGC
Statistics
Matches: 164, Mismatches: 16, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.74
41 9 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:101419232 original size:119 final size:119
Alignment explanation
Indices: 101418986--101419243 Score: 283
Period size: 119 Copynumber: 2.2 Consensus size: 119
101418976 TTGAATGATG
* *
101418986 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* * **
101419051 GTACGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
66 GTACGAGATACTAATACCGGGCTAAGCCCAAAGGCATTTGAACGAGTTACTAAA
* * * **
101419105 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
101419168 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCAAAGGCATTTGAACGAG-TAGCTATA
64 TTGTACGAGATACTAAT-ACCGGGCTAAG-CCCAAAGGCATTTGAACGAGTTA-CTAAA
* *
101419225 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
101419244 TACGTGATTT
Statistics
Matches: 117, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 83 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTACGAGATACTAATACCGGGCTAAGCCCAAAGGCATTTGAACGAGTTACTAAA
Found at i:101425715 original size:46 final size:48
Alignment explanation
Indices: 101425628--101425730 Score: 131
Period size: 46 Copynumber: 2.2 Consensus size: 48
101425618 TACATGAATT
*
101425628 ATTCCTGTCTCCAATGCCATATATATATAATATGGGATTACATGGCTC
1 ATTCCTGTCTCCAAAGCCATATATATATAATATGGGATTACATGGCTC
* * *
101425676 ATTCCTGTCTCTAAAGCCATATA-A-CTGATAT-GGACTTACATGGCTC
1 ATTCCTGTCTCCAAAGCCATATATATATAATATGGGA-TTACATGGCTC
*
101425722 ATTTCTGTC
1 ATTCCTGTC
101425731 CTGTCCTGTC
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
45 3 0.06
46 24 0.49
47 1 0.02
48 21 0.43
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (48 bp):
ATTCCTGTCTCCAAAGCCATATATATATAATATGGGATTACATGGCTC
Found at i:101429170 original size:46 final size:45
Alignment explanation
Indices: 101429103--101429278 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 45
101429093 TATTTGGGCA
101429103 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** *
101429149 TCCGAACTCGTTGAGTTGAGTCTGAGTTCGAGAGCTGTAACTA-G-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC---A-CT-TATGGATGCGAAG
* * *
101429196 TCCCAGCTCGTTGAGTTGAGTCCGAGCTCACTTATGGATGCGAAAG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-AAG
* *
101429242 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
101429279 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 16, Indels: 18
0.76 0.12 0.13
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 1 0.01
46 62 0.59
47 25 0.24
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:101429258 original size:93 final size:93
Alignment explanation
Indices: 101429099--101429270 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
101429089 AGAATATTTG
* * * *
101429099 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCCAACTCGTTGAGTTGAGTCCGAGCTCACTTATGGATGCGAAAGCCCGAACTCGTTGAG
*
101429164 TTGAGTCTGAGTTCGAGAGCTGTAACTA
66 TTGAGTCCGAGTTCGAGAGCTGTAACTA
* *
101429192 GGCATCCCAGCTCGTTGAGTTGAGTCCGAGCTCACTTATGGATGCGAAAGCCCGAGCTCGTTGAG
1 GGCATCCCAACTCGTTGAGTTGAGTCCGAGCTCACTTATGGATGCGAAAGCCCGAACTCGTTGAG
101429257 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
101429271 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCCAACTCGTTGAGTTGAGTCCGAGCTCACTTATGGATGCGAAAGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGCTGTAACTA
Found at i:101433852 original size:27 final size:26
Alignment explanation
Indices: 101433835--101433904 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
101433825 ATATTAAGTC
101433835 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
101433862 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
101433890 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
101433905 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:101433898 original size:28 final size:28
Alignment explanation
Indices: 101433835--101433932 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
101433825 ATATTAAGTC
*
101433835 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
101433862 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
101433890 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
101433919 CGCACACTTAGTGC
1 CGCACACTTAGTGC
101433933 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:101434396 original size:12 final size:12
Alignment explanation
Indices: 101434379--101434405 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
101434369 TGGGCATACT
101434379 TATGTATATATA
1 TATGTATATATA
101434391 TATGTATATATA
1 TATGTATATATA
101434403 TAT
1 TAT
101434406 ACTTCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:101442136 original size:27 final size:26
Alignment explanation
Indices: 101442119--101442188 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
101442109 ATATTAAGTC
101442119 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
101442146 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
101442174 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
101442189 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:101442182 original size:28 final size:28
Alignment explanation
Indices: 101442119--101442216 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
101442109 ATATTAAGTC
*
101442119 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
101442146 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
101442174 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
101442203 CGCACACTTAGTGC
1 CGCACACTTAGTGC
101442217 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:101442682 original size:14 final size:14
Alignment explanation
Indices: 101442663--101442690 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
101442653 TGGGCATACT
101442663 TATGTATATATATA
1 TATGTATATATATA
101442677 TATGTATATATATA
1 TATGTATATATATA
101442691 CTTCGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (14 bp):
TATGTATATATATA
Found at i:101445117 original size:16 final size:16
Alignment explanation
Indices: 101445090--101445129 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
101445080 GTATGTGTGT
*
101445090 TCTTTATCCTGGA-TC
1 TCTTTATTCTGGAGTC
101445105 TCTATTATTCTGGAGTC
1 TCT-TTATTCTGGAGTC
101445122 TCTTTATT
1 TCTTTATT
101445130 TGCCTTTTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 3 0.14
16 14 0.64
17 5 0.23
ACGTcount: A:0.15, C:0.20, G:0.12, T:0.53
Consensus pattern (16 bp):
TCTTTATTCTGGAGTC
Found at i:101447792 original size:91 final size:91
Alignment explanation
Indices: 101447682--101447851 Score: 220
Period size: 91 Copynumber: 1.9 Consensus size: 91
101447672 TAGATATTTG
* * * *
101447682 GGCATCCGAACTCGTTGAGTTGAGT-CGAGAGTCACTTA-GATGC-GAATGTCCGAAACTCGTTG
1 GGCATCCCAACTCGTTGAGTTGAGTCCGAG-GTCACTTAGGATACAGAACGCCCG-AACTCGTTG
101447744 AGTTGAGTCCGAGTTCGAGAGTGTAACTA
64 -GTTGAGTCCGAGTTCGAGAGTGTAACTA
* * *
101447773 GGCATCCCAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAGAACGCCCGAGCTCGTTGG
1 GGCATCCCAACTCGTTGAGTTGAGTCCGAGGTCACTTA-GGATACAGAACGCCCGAACTCGTTGG
101447838 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
101447852 AGTTATGGGG
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
91 30 0.44
92 19 0.28
93 12 0.18
94 7 0.10
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.26
Consensus pattern (91 bp):
GGCATCCCAACTCGTTGAGTTGAGTCCGAGGTCACTTAGGATACAGAACGCCCGAACTCGTTGGT
TGAGTCCGAGTTCGAGAGTGTAACTA
Found at i:101449834 original size:43 final size:42
Alignment explanation
Indices: 101449669--101449836 Score: 144
Period size: 43 Copynumber: 4.0 Consensus size: 42
101449659 ATATCGTACA
* * *
101449669 ATGCCAACGTCCCAGACGTGGTCTTACATGCTATCTA-ATATTG
1 ATGCCAACGTCCCAGACATGGTCTTACATG-AATC-ACATATCG
* * * *
101449712 ATGCC-ACTGTCTCAGATAGGGTCTTACATGAATCAAATA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACATGAATCACATATCG
* * * *
101449753 ATGCCGATGTCCCAGGCATGGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACATG-AATCACATATCG
* * *
101449796 ATGCCAACGTCCTAGATATGGTCTTACATGAGAACACATAT
1 ATGCCAACGTCCCAGACATGGTCTTACATGA-ATCACATAT
101449837 TGGAAACCCT
Statistics
Matches: 99, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
41 24 0.24
42 18 0.18
43 57 0.58
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.27
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACATGGTCTTACATGAATCACATATCG
Found at i:101457483 original size:39 final size:39
Alignment explanation
Indices: 101457416--101457490 Score: 107
Period size: 39 Copynumber: 1.9 Consensus size: 39
101457406 TACTTCCAGT
* *
101457416 TTGGTGTGTTCCGGGTGGATCAGCTCTTATGAGCTTCTA
1 TTGGCGTGTTCCGGGTGGATCAGATCTTATGAGCTTCTA
*
101457455 TTGGCGTGTTTCGGGTGGA-CTAGATCTTATGAGCTT
1 TTGGCGTGTTCCGGGTGGATC-AGATCTTATGAGCTT
101457491 TTGTTTGACG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
38 1 0.03
39 31 0.97
ACGTcount: A:0.13, C:0.16, G:0.32, T:0.39
Consensus pattern (39 bp):
TTGGCGTGTTCCGGGTGGATCAGATCTTATGAGCTTCTA
Found at i:101457931 original size:43 final size:42
Alignment explanation
Indices: 101457817--101458007 Score: 189
Period size: 43 Copynumber: 4.6 Consensus size: 42
101457807 TTTATGAGAA
* * *
101457817 AAACGCCGCTAAAAGTCATGATCTTTAGTGGCGCTTTTCCCAC
1 AAACGCCGCTAAAA-ACATGACCTTTAGCGGCGCTTTTCCCAC
*
101457860 AAACTG--G-----AACATGACCTTTAGCGGCGCTTTTCCCAT
1 AAAC-GCCGCTAAAAACATGACCTTTAGCGGCGCTTTTCCCAC
*
101457896 AAACGCCGCTAAAAACCATGACCTTTAGCGACGCTTTTCCCAC
1 AAACGCCGCTAAAAA-CATGACCTTTAGCGGCGCTTTTCCCAC
* * * * * *
101457939 AGACGCCACTAAAGAACATGACTTTTAACGGCACTTTTCTCAC
1 AAACGCCGCTAAA-AACATGACCTTTAGCGGCGCTTTTCCCAC
101457982 AAACGCCGCTAAAAATCATGACCTTT
1 AAACGCCGCTAAAAA-CATGACCTTT
101458008 TAAAAAATTA
Statistics
Matches: 121, Mismatches: 16, Indels: 22
0.76 0.10 0.14
Matches are distributed among these distances:
35 1 0.01
36 28 0.23
37 2 0.02
42 5 0.04
43 82 0.68
44 3 0.02
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (42 bp):
AAACGCCGCTAAAAACATGACCTTTAGCGGCGCTTTTCCCAC
Found at i:101459578 original size:26 final size:25
Alignment explanation
Indices: 101459524--101459612 Score: 80
Period size: 25 Copynumber: 3.6 Consensus size: 25
101459514 TATATATATC
101459524 ATTTAT-T-TATT-TTAAAAA-ACT
1 ATTTATATATATTATTAAAAATACT
**
101459545 ATACATATATCATTATTAAAAATACT
1 ATTTATATAT-ATTATTAAAAATACT
**
101459571 ATTTATATAT-TTATATAAAAATTTT
1 ATTTATATATATTAT-TAAAAATACT
101459596 ATTTATCATATATTATT
1 ATTTAT-ATATATTATT
101459613 TTCCTATATA
Statistics
Matches: 54, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
21 4 0.07
22 1 0.02
23 1 0.02
24 7 0.13
25 21 0.39
26 16 0.30
27 4 0.07
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.51
Consensus pattern (25 bp):
ATTTATATATATTATTAAAAATACT
Found at i:101459638 original size:14 final size:14
Alignment explanation
Indices: 101459621--101459667 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 14
101459611 TTTTCCTATA
101459621 TATATTATATTTAT
1 TATATTATATTTAT
* *
101459635 TATATAACATTTAT
1 TATATTATATTTAT
*
101459649 TATATTTTA-TTA-
1 TATATTATATTTAT
101459661 TATATTA
1 TATATTA
101459668 CTTTTTTTTA
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
12 6 0.22
13 3 0.11
14 18 0.67
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (14 bp):
TATATTATATTTAT
Found at i:101459931 original size:20 final size:21
Alignment explanation
Indices: 101459906--101459988 Score: 68
Period size: 20 Copynumber: 4.1 Consensus size: 21
101459896 TTTTACATAC
101459906 TTTTTATTTTATATATTATT-
1 TTTTTATTTTATATATTATTA
****
101459926 TTTTTAACCAATATATT-TTA
1 TTTTTATTTTATATATTATTA
*
101459946 TTTTTA-TATATA-ATTATTA
1 TTTTTATTTTATATATTATTA
101459965 TTTTT-TTATTATATATTATATA
1 TTTTTATT-TTATATATTAT-TA
101459987 TT
1 TT
101459989 ATATATTAAA
Statistics
Matches: 49, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
18 3 0.06
19 14 0.29
20 23 0.47
21 5 0.10
22 4 0.08
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.66
Consensus pattern (21 bp):
TTTTTATTTTATATATTATTA
Found at i:101459963 original size:21 final size:21
Alignment explanation
Indices: 101459936--101459988 Score: 67
Period size: 19 Copynumber: 2.6 Consensus size: 21
101459926 TTTTTAACCA
*
101459936 ATATATT-TTATTTTTATA-T
1 ATATATTATTATTTTTTTATT
101459955 ATA-ATTATTATTTTTTTATT
1 ATATATTATTATTTTTTTATT
101459975 ATATATTATATATT
1 ATATATTAT-TATT
101459989 ATATATTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 3 0.10
19 13 0.45
20 4 0.14
21 5 0.17
22 4 0.14
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (21 bp):
ATATATTATTATTTTTTTATT
Found at i:101459976 original size:24 final size:25
Alignment explanation
Indices: 101459939--101459990 Score: 72
Period size: 24 Copynumber: 2.1 Consensus size: 25
101459929 TTAACCAATA
101459939 TATTTTATTTTTATATATAAT-TAT
1 TATTTTATTTTTATATATAATATAT
*
101459963 TATTTT-TTTATTATATATTATATAT
1 TATTTTATTT-TTATATATAATATAT
101459988 TAT
1 TAT
101459991 ATATTAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
23 3 0.12
24 16 0.64
25 6 0.24
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (25 bp):
TATTTTATTTTTATATATAATATAT
Done.