Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115637255
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 5450143 characters in sequence are not A, C, G, or T
File 303 of 349
Found at i:101459983 original size:7 final size:7
Alignment explanation
Indices: 101459971--101459996 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
101459961 ATTATTTTTT
101459971 TATTATA
1 TATTATA
101459978 TATTATA
1 TATTATA
101459985 TATTATA
1 TATTATA
101459992 TATTA
1 TATTA
101459997 AATACTATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (7 bp):
TATTATA
Found at i:101460021 original size:25 final size:28
Alignment explanation
Indices: 101459986--101460036 Score: 81
Period size: 25 Copynumber: 1.9 Consensus size: 28
101459976 TATATTATAT
101459986 ATTATATATTAAATA-C-TATTTTTAAA
1 ATTATATATTAAATATCATATTTTTAAA
101460012 ATTAT-TATTAAATATCATATTTTTA
1 ATTATATATTAAATATCATATTTTTA
101460037 TTTGTATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 9 0.39
26 6 0.26
27 8 0.35
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (28 bp):
ATTATATATTAAATATCATATTTTTAAA
Found at i:101462796 original size:15 final size:16
Alignment explanation
Indices: 101462770--101462800 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
101462760 TCTCTCTTGC
101462770 TTTTAGATCATATATA
1 TTTTAGATCATATATA
101462786 TTTTA-ATCATATATA
1 TTTTAGATCATATATA
101462801 AGACAAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.52
Consensus pattern (16 bp):
TTTTAGATCATATATA
Found at i:101465321 original size:3 final size:3
Alignment explanation
Indices: 101465313--101465340 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
101465303 ACTAAAAGAA
101465313 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
101465341 GCAAAGCTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:101466021 original size:72 final size:73
Alignment explanation
Indices: 101465898--101466047 Score: 189
Period size: 72 Copynumber: 2.1 Consensus size: 73
101465888 TTCGGGTATA
* * * *
101465898 AAATAGAAGAACAGGTTGAGAAAGGCTGAGAAAGAAAAGGGAATTAGGAAAGAAAAGGGAA-TCG
1 AAATAGAAGAACAGGCTGAGAAAGGCTGAGAAAGAAAAGGGAATGAGGAAAGAAAAAGCAATTCG
101465962 GGGGAGAG
66 GGGGAGAG
* * *
101465970 AAATAGAAGTACAGGCTGAGGATGGCTGAGAAAG-AAAGTGGAATCGA-GAAAGAAAAAGCAATT
1 AAATAGAAGAACAGGCTGAGAAAGGCTGAGAAAGAAAAG-GGAAT-GAGGAAAGAAAAAGCAATT
*
101466033 GGGGGGAGAG
64 CGGGGGAGAG
101466043 AAATA
1 AAATA
101466048 AAACGGCATC
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
71 4 0.06
72 47 0.70
73 16 0.24
ACGTcount: A:0.47, C:0.05, G:0.36, T:0.11
Consensus pattern (73 bp):
AAATAGAAGAACAGGCTGAGAAAGGCTGAGAAAGAAAAGGGAATGAGGAAAGAAAAAGCAATTCG
GGGGAGAG
Found at i:101466608 original size:21 final size:21
Alignment explanation
Indices: 101466584--101466675 Score: 62
Period size: 21 Copynumber: 4.3 Consensus size: 21
101466574 AGCCGATAAC
101466584 CCTT-AACCCGTAACACC-TAAA
1 CCTTAAACCC-TAAC-CCTTAAA
101466605 CCTTAAACCCTAACCCTTAAA
1 CCTTAAACCCTAACCCTTAAA
* * * *
101466626 CCATAAACCATAATCATTAAA
1 CCTTAAACCCTAACCCTTAAA
* * * * *
101466647 CCCATAATCCATAATCCATAAA
1 -CCTTAAACCCTAACCCTTAAA
101466669 CCTTAAA
1 CCTTAAA
101466676 ATAGAAACTC
Statistics
Matches: 59, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
20 2 0.03
21 34 0.58
22 23 0.39
ACGTcount: A:0.43, C:0.33, G:0.01, T:0.23
Consensus pattern (21 bp):
CCTTAAACCCTAACCCTTAAA
Found at i:101466616 original size:14 final size:14
Alignment explanation
Indices: 101466599--101466733 Score: 58
Period size: 14 Copynumber: 9.5 Consensus size: 14
101466589 ACCCGTAACA
101466599 CCTAAACCTTAAAC
1 CCTAAACCTTAAAC
*
101466613 CCTAACCCTTAAAC
1 CCTAAACCTTAAAC
* * *
101466627 CATAAACCATAATC
1 CCTAAACCTTAAAC
** * *
101466641 ATTAAACCCATAATC
1 CCTAAA-CCTTAAAC
* * *
101466656 CATAATCCATAAAC
1 CCTAAACCTTAAAC
* * *
101466670 CTTAAA-ATAGAAAC
1 CCTAAACCT-TAAAC
101466684 TCCTAAACCTTAAAC
1 -CCTAAACCTTAAAC
*
101466699 CCTAAA-CTATATAC
1 CCTAAACCT-TAAAC
* * *
101466713 CCTAAGCCATAAAT
1 CCTAAACCTTAAAC
101466727 CCTAAAC
1 CCTAAAC
101466734 TATAATGATA
Statistics
Matches: 90, Mismatches: 25, Indels: 12
0.71 0.20 0.09
Matches are distributed among these distances:
13 2 0.02
14 66 0.73
15 21 0.23
16 1 0.01
ACGTcount: A:0.45, C:0.30, G:0.01, T:0.23
Consensus pattern (14 bp):
CCTAAACCTTAAAC
Found at i:101466658 original size:22 final size:23
Alignment explanation
Indices: 101466608--101466670 Score: 71
Period size: 22 Copynumber: 2.9 Consensus size: 23
101466598 ACCTAAACCT
* *
101466608 TAAACCCTAA-CCCTTAAA-CCA
1 TAAACCATAATCCATTAAACCCA
101466629 TAAACCATAAT-CATTAAACCCA
1 TAAACCATAATCCATTAAACCCA
*
101466651 TAATCCATAATCCA-TAAACC
1 TAAACCATAATCCATTAAACC
101466671 TTAAAATAGA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
21 15 0.42
22 19 0.53
23 2 0.06
ACGTcount: A:0.46, C:0.32, G:0.00, T:0.22
Consensus pattern (23 bp):
TAAACCATAATCCATTAAACCCA
Found at i:101466674 original size:29 final size:29
Alignment explanation
Indices: 101466563--101466675 Score: 88
Period size: 29 Copynumber: 3.9 Consensus size: 29
101466553 AATCATACAA
* * *
101466563 CATAAACCTTAAGCCGATAACCCTT-AACC
1 CATAAACCATAAACC-ATAAACCTTAAACC
* * *
101466592 CGTAACACC-TAAACCTTAAACCCT-AACC
1 CATAA-ACCATAAACCATAAACCTTAAACC
* * *
101466620 CTTAAACCATAAACCATAATCATTAAACC
1 CATAAACCATAAACCATAAACCTTAAACC
* *
101466649 CATAATCCATAATCCATAAACCTTAAA
1 CATAAACCATAAACCATAAACCTTAAA
101466676 ATAGAAACTC
Statistics
Matches: 66, Mismatches: 15, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
27 3 0.05
28 25 0.38
29 35 0.53
30 3 0.05
ACGTcount: A:0.43, C:0.32, G:0.03, T:0.22
Consensus pattern (29 bp):
CATAAACCATAAACCATAAACCTTAAACC
Found at i:101466725 original size:28 final size:29
Alignment explanation
Indices: 101466662--101466738 Score: 84
Period size: 28 Copynumber: 2.7 Consensus size: 29
101466652 AATCCATAAT
* * *
101466662 CCATAAACCTTAAAATAGAAACTCCTAAA
1 CCATAAACCCTAAACTATAAACTCCTAAA
* * *
101466691 CCTTAAACCCTAAACTATATAC-CCTAAG
1 CCATAAACCCTAAACTATAAACTCCTAAA
*
101466719 CCATAAATCCTAAACTATAA
1 CCATAAACCCTAAACTATAA
101466739 TGATAATTAA
Statistics
Matches: 39, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
28 22 0.56
29 17 0.44
ACGTcount: A:0.47, C:0.27, G:0.03, T:0.23
Consensus pattern (29 bp):
CCATAAACCCTAAACTATAAACTCCTAAA
Found at i:101466738 original size:14 final size:14
Alignment explanation
Indices: 101466664--101466738 Score: 62
Period size: 14 Copynumber: 5.3 Consensus size: 14
101466654 TCCATAATCC
* *
101466664 ATAAACCTTAAAAT
1 ATAAACCCTAAACT
*
101466678 AGAAACTCCTAAACCT
1 ATAAAC-CCTAAA-CT
101466694 -TAAACCCTAAACT
1 ATAAACCCTAAACT
* * *
101466707 ATATACCCTAAGCC
1 ATAAACCCTAAACT
*
101466721 ATAAATCCTAAACT
1 ATAAACCCTAAACT
101466735 ATAA
1 ATAA
101466739 TGATAATTAA
Statistics
Matches: 47, Mismatches: 11, Indels: 6
0.73 0.17 0.09
Matches are distributed among these distances:
13 2 0.04
14 35 0.74
15 9 0.19
16 1 0.02
ACGTcount: A:0.48, C:0.25, G:0.03, T:0.24
Consensus pattern (14 bp):
ATAAACCCTAAACT
Found at i:101467100 original size:40 final size:40
Alignment explanation
Indices: 101467039--101467194 Score: 231
Period size: 40 Copynumber: 3.9 Consensus size: 40
101467029 AAATATATTT
101467039 AAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTTTCA
1 AAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTTTCA
* * *
101467079 AAAATCGCCGCTAATGTTCGATCTATAGCGGCGATTTTCA
1 AAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTTTCA
* *
101467119 AAAAGCGCCGCTAATGCTCGATCTATGGCGGCATTTTTCA
1 AAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTTTCA
* * * *
101467159 GATAGCACCGCTAATGCTTGATCTATAGCGGCGTTT
1 AAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTT
101467195 GGATAAAAAA
Statistics
Matches: 102, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 102 1.00
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (40 bp):
AAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTTTCA
Found at i:101473850 original size:26 final size:26
Alignment explanation
Indices: 101473812--101473921 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
101473802 CATGAAATTC
*
101473812 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
101473838 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
*
101473864 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
*
101473890 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCCA
101473916 TTATCA
1 TTATCA
101473922 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.35, C:0.25, G:0.06, T:0.34
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:101491990 original size:40 final size:40
Alignment explanation
Indices: 101491944--101492168 Score: 257
Period size: 40 Copynumber: 5.7 Consensus size: 40
101491934 GCTCCTCGTT
*
101491944 CAAATGCCTTCGGGACATAGCCCGG-TTGTAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAATTCGCA
* *
101491984 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAATTCGCA
*
101492024 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAAT-TCGCA
*
101492063 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGT-ATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAT-TCGCA
* * * * *
101492103 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AATTCGCA
101492144 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
101492169 CATCATTCAA
Statistics
Matches: 165, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
38 3 0.02
39 31 0.19
40 117 0.71
41 13 0.08
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAATTCGCA
Found at i:101492046 original size:79 final size:78
Alignment explanation
Indices: 101491944--101492168 Score: 267
Period size: 79 Copynumber: 2.8 Consensus size: 78
101491934 GCTCCTCGTT
* * *
101491944 CAAATGCCTTCGGGACATAGCCCGGTTGTAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGAT-TAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
101492009 ATTTAGTAACTCGCA
64 ATTTAGTAACTCGCA
*
101492024 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGCTTAGCCCGG-ATTAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAGCCCG
*
101492087 GATTTAGTATCTCGCA
63 GATTTAGTAACTCGCA
* * * * *
101492103 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGGAT-TAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
101492167 GA
63 GA
101492169 CATCATTCAA
Statistics
Matches: 126, Mismatches: 11, Indels: 16
0.82 0.07 0.10
Matches are distributed among these distances:
78 5 0.04
79 66 0.52
80 43 0.34
81 11 0.09
82 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGATTAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
TTAGTAACTCGCA
Found at i:101492128 original size:119 final size:120
Alignment explanation
Indices: 101491944--101492168 Score: 291
Period size: 119 Copynumber: 1.9 Consensus size: 120
101491934 GCTCCTCGTT
101491944 CAAATGCCTTCGGGACATAGCCCGGTTGTAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGTTGTAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
101492009 ATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * **
101492063 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CAAATGCCTTCGGGA-CATAGCCCGG-TTGTAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAAC
* *
101492124 CCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
62 CCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
101492169 CATCATTCAA
Statistics
Matches: 92, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
118 8 0.09
119 63 0.68
120 21 0.23
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGTTGTAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:101499916 original size:40 final size:40
Alignment explanation
Indices: 101499870--101500094 Score: 257
Period size: 40 Copynumber: 5.7 Consensus size: 40
101499860 GCTCCTCGTT
*
101499870 CAAATGCCTTCGGGACATAGCCCGG-TTGTAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAATTCGCA
* *
101499910 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAATTCGCA
*
101499950 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAAT-TCGCA
*
101499989 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGT-ATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAT-TCGCA
* * * * *
101500029 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AATTCGCA
101500070 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
101500095 CATCATTCAA
Statistics
Matches: 165, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
38 3 0.02
39 31 0.19
40 117 0.71
41 13 0.08
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAATTCGCA
Found at i:101499972 original size:79 final size:78
Alignment explanation
Indices: 101499870--101500094 Score: 267
Period size: 79 Copynumber: 2.8 Consensus size: 78
101499860 GCTCCTCGTT
* * *
101499870 CAAATGCCTTCGGGACATAGCCCGGTTGTAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGAT-TAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
101499935 ATTTAGTAACTCGCA
64 ATTTAGTAACTCGCA
*
101499950 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGCTTAGCCCGG-ATTAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAGCCCG
*
101500013 GATTTAGTATCTCGCA
63 GATTTAGTAACTCGCA
* * * * *
101500029 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGGAT-TAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
101500093 GA
63 GA
101500095 CATCATTCAA
Statistics
Matches: 126, Mismatches: 11, Indels: 16
0.82 0.07 0.10
Matches are distributed among these distances:
78 5 0.04
79 66 0.52
80 43 0.34
81 11 0.09
82 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGATTAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
TTAGTAACTCGCA
Found at i:101500054 original size:119 final size:120
Alignment explanation
Indices: 101499870--101500094 Score: 291
Period size: 119 Copynumber: 1.9 Consensus size: 120
101499860 GCTCCTCGTT
101499870 CAAATGCCTTCGGGACATAGCCCGGTTGTAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGTTGTAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
101499935 ATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * **
101499989 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CAAATGCCTTCGGGA-CATAGCCCGG-TTGTAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAAC
* *
101500050 CCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
62 CCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
101500095 CATCATTCAA
Statistics
Matches: 92, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
118 8 0.09
119 63 0.68
120 21 0.23
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGTTGTAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:101513065 original size:33 final size:34
Alignment explanation
Indices: 101512978--101513079 Score: 97
Period size: 33 Copynumber: 3.1 Consensus size: 34
101512968 TTTTGCATTT
101512978 CTGATACTG-TACTAGT-TGGGCTAAGGCCCACA
1 CTGATACTGCTACTAGTATGGGCTAAGGCCCACA
* * * *
101513010 CAGTTACTACTACT-GTAGTGGGCTAAGGCCC-CC
1 CTGATACTGCTACTAGTA-TGGGCTAAGGCCCACA
* *
101513043 CTGATATTGCTACTAGTATGGGCTCAA-GCCCAAA
1 CTGATACTGCTACTAGTATGGGCT-AAGGCCCACA
101513077 CTG
1 CTG
101513080 CTCAACACTG
Statistics
Matches: 54, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
32 8 0.15
33 25 0.46
34 21 0.39
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (34 bp):
CTGATACTGCTACTAGTATGGGCTAAGGCCCACA
Found at i:101523761 original size:22 final size:22
Alignment explanation
Indices: 101523733--101523854 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
101523723 TTCCACATCC
101523733 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
101523755 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
101523779 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
101523802 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
101523826 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
101523849 ATCACA
1 ATCACA
101523855 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:101523768 original size:47 final size:47
Alignment explanation
Indices: 101523705--101524352 Score: 921
Period size: 47 Copynumber: 13.6 Consensus size: 47
101523695 CCCTTCGGGA
* * *
101523705 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
101523752 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
101523799 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
101523846 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
101523893 CTTATCACACATACT-CA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATA-TACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
101523940 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
101523987 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
101524034 CTTATCACATATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
101524085 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
101524132 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
101524181 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
101524228 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
101524277 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCAGTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
101524326 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
101524353 TATTCAAATA
Statistics
Matches: 567, Mismatches: 22, Indels: 24
0.92 0.04 0.04
Matches are distributed among these distances:
46 2 0.00
47 380 0.67
49 141 0.25
51 43 0.08
52 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:101524193 original size:145 final size:143
Alignment explanation
Indices: 101523705--101524352 Score: 924
Period size: 145 Copynumber: 4.5 Consensus size: 143
101523695 CCCTTCGGGA
* *
101523705 CTTATCACAT-T-TATACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
* *
101523768 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACA
*
101523833 TTGGCCATTCGGC
131 TTGGCCATTAGGC
* * *
101523846 CTTATCAC--ACATACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACT
1 CTTATCACATATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA-T
* *
101523908 -CA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATC
64 ACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATC
*
101523971 ACATTGGCCATTCGGC
128 ACATTGGCCATTAGGC
* *
101523987 CTTATCAC--ACATACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATA
1 CTTATCACATATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCAC----ATA
101524049 TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACT-TTCACATTC
61 TATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA-TGTTCACATTC
*
101524113 ATCACATCGGCCATTAGGC
125 ATCACATTGGCCATTAGGC
* *
101524132 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
* *
101524197 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT-TTCACATTCATC
66 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATACA-TGTTCACATTCATC
101524261 ACATTGGCCATTAGGC
128 ACATTGGCCATTAGGC
* *
101524277 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCAGTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
101524342 ACTTTCACATT
66 ACTTTCACATT
101524353 TATTCAAATA
Statistics
Matches: 471, Mismatches: 19, Indels: 30
0.91 0.04 0.06
Matches are distributed among these distances:
140 2 0.00
141 183 0.39
142 1 0.00
143 45 0.10
144 1 0.00
145 195 0.41
146 2 0.00
147 41 0.09
148 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACA
TTGGCCATTAGGC
Found at i:101525859 original size:56 final size:56
Alignment explanation
Indices: 101525792--101525911 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
101525782 TATTAGTTTA
*
101525792 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACAAGTT
*
101525848 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACAAGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACAAGTT
101525904 TTGCCCAT
1 TTGCCCAT
101525912 CATCCCTTGT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.44
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACAAGTT
Found at i:101534743 original size:29 final size:29
Alignment explanation
Indices: 101534699--101534857 Score: 119
Period size: 29 Copynumber: 5.5 Consensus size: 29
101534689 GATCTCATTT
*
101534699 CACACACTTAGTGCTCCAACAACCGATCTTG
1 CACACAC--AGTGCTCCAACAACCGATCTCG
**** * *
101534730 CACACACAGTGCT-CGGTTACAGAACTCG
1 CACACACAGTGCTCCAACAACCGATCTCG
*
101534758 CACACACAGTGC-CTCAACAACCGATGTCG
1 CACACACAGTGCTC-CAACAACCGATCTCG
**** * *
101534787 CACACACAGTGCT-CGGTTACGGAACTCG
1 CACACACAGTGCTCCAACAACCGATCTCG
101534815 CACACACAGTGC-CTCAACAACCGATCTCG
1 CACACACAGTGCTC-CAACAACCGATCTCG
*
101534844 CACACACAATGCTC
1 CACACACAGTGCTC
101534858 GGTTATGGAA
Statistics
Matches: 94, Mismatches: 28, Indels: 13
0.70 0.21 0.10
Matches are distributed among these distances:
28 40 0.43
29 46 0.49
30 1 0.01
31 7 0.07
ACGTcount: A:0.30, C:0.36, G:0.17, T:0.17
Consensus pattern (29 bp):
CACACACAGTGCTCCAACAACCGATCTCG
Found at i:101534763 original size:28 final size:28
Alignment explanation
Indices: 101534720--101534883 Score: 139
Period size: 28 Copynumber: 5.8 Consensus size: 28
101534710 TGCTCCAACA
* *
101534720 ACCGATCTTGCACACACAGTGCTCGGTT
1 ACCGAACTCGCACACACAGTGCTCGGTT
* ****
101534748 ACAGAACTCGCACACACAGTGCCTCAACA
1 ACCGAACTCGCACACACAGTG-CTCGGTT
**
101534777 ACCGATGTCGCACACACAGTGCTCGGTT
1 ACCGAACTCGCACACACAGTGCTCGGTT
* ****
101534805 ACGGAACTCGCACACACAGTGCCTCAACA
1 ACCGAACTCGCACACACAGTG-CTCGGTT
* *
101534834 ACCGATCTCGCACACACAATGCTCGGTT
1 ACCGAACTCGCACACACAGTGCTCGGTT
** *
101534862 ATGGAACTCGCACACACGGTGC
1 ACCGAACTCGCACACACAGTGC
101534884 CTATGTTCAC
Statistics
Matches: 101, Mismatches: 33, Indels: 4
0.73 0.24 0.03
Matches are distributed among these distances:
28 59 0.58
29 42 0.42
ACGTcount: A:0.28, C:0.35, G:0.20, T:0.17
Consensus pattern (28 bp):
ACCGAACTCGCACACACAGTGCTCGGTT
Found at i:101534790 original size:57 final size:57
Alignment explanation
Indices: 101534715--101534885 Score: 288
Period size: 57 Copynumber: 3.0 Consensus size: 57
101534705 CTTAGTGCTC
* *
101534715 CAACAACCGATCTTGCACACACAGTGCTCGGTTACAGAACTCGCACACACAGTGCCT
1 CAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCGCACACACAGTGCCT
*
101534772 CAACAACCGATGTCGCACACACAGTGCTCGGTTACGGAACTCGCACACACAGTGCCT
1 CAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCGCACACACAGTGCCT
* * *
101534829 CAACAACCGATCTCGCACACACAATGCTCGGTTATGGAACTCGCACACACGGTGCCT
1 CAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCGCACACACAGTGCCT
101534886 ATGTTCACTT
Statistics
Matches: 107, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
57 107 1.00
ACGTcount: A:0.29, C:0.35, G:0.19, T:0.17
Consensus pattern (57 bp):
CAACAACCGATCTCGCACACACAGTGCTCGGTTACGGAACTCGCACACACAGTGCCT
Found at i:101537175 original size:39 final size:39
Alignment explanation
Indices: 101537131--101537321 Score: 303
Period size: 39 Copynumber: 4.9 Consensus size: 39
101537121 TACCAACACA
*
101537131 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCTGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
* *
101537170 AAGCCTACGAGACTTTA-CCCTGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCC-GGATACATTTCCAGCACG
*
101537209 AAGCCTACGGGACTTTAGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
*
101537248 AAGCCTGCGGGACTTTAGCCCTGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
* *
101537287 AAGCCTGCGGGACTATAGCCCGAATACATTTCCAG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAG
101537322 TGTCTTGCAT
Statistics
Matches: 141, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
38 3 0.02
39 135 0.96
40 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.22
Consensus pattern (39 bp):
AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
Found at i:101539100 original size:20 final size:20
Alignment explanation
Indices: 101539055--101539100 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
101539045 GGCAAGTGGT
* *
101539055 TTTA-TTTTATTCCTTTTCG
1 TTTATTTTTATTACTTTTCA
101539074 TTTATTTTTATTAC-TTTCA
1 TTTATTTTTATTACTTTTCA
101539093 TTTCATTT
1 TTT-ATTT
101539101 CATATAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 11 0.48
20 12 0.52
ACGTcount: A:0.15, C:0.13, G:0.02, T:0.70
Consensus pattern (20 bp):
TTTATTTTTATTACTTTTCA
Found at i:101542962 original size:40 final size:40
Alignment explanation
Indices: 101542906--101543053 Score: 192
Period size: 40 Copynumber: 3.7 Consensus size: 40
101542896 CGGATGATAA
* * *
101542906 CCGGGCTAAGTCCCGAAGGAATTTGAGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATA-T
*
101542946 CCGGGCTAAG-CTCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTC-CCGAAGGCATTTGAGCGAGTTACTATAT
* * * *
101542986 CCAGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATAT
101543026 CCGGGCTAAGTCCCGAAGGCATTTGAGC
1 CCGGGCTAAGTCCCGAAGGCATTTGAGC
101543054 AAGTAGTTAT
Statistics
Matches: 95, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 92 0.97
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATAT
Found at i:101543065 original size:80 final size:79
Alignment explanation
Indices: 101542909--101543082 Score: 192
Period size: 80 Copynumber: 2.2 Consensus size: 79
101542899 ATGATAACCG
* * *
101542909 GGCTAAGTCCCGAAGGAATTTGAGCTAGTGACTAATTCCGGGCTAAGCTCCGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGAATTTGAGCGAGTGACTAATACCGGGCTAAGCTCCGAAGGCATTTGAGC
*
101542974 GAGTTACTATATCC
66 AAGTTACTATATCC
* * * *
101542988 AGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAG-TCCCGAAGGCATTTG
1 -GGCTAAGTCCCGAAGGAATTTGAGCGAGTGACTAAT-ACCGGGCTAAGCT-CCGAAGGCATTTG
* *
101543051 AGCAAG-TAGTTATATTC
63 AGCAAGTTA-CTATATCC
*
101543068 GGCTAAATCCCGAAG
1 GGCTAAGTCCCGAAG
101543083 ATGCTTGGGT
Statistics
Matches: 79, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
79 18 0.23
80 61 0.77
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (79 bp):
GGCTAAGTCCCGAAGGAATTTGAGCGAGTGACTAATACCGGGCTAAGCTCCGAAGGCATTTGAGC
AAGTTACTATATCC
Found at i:101543349 original size:22 final size:21
Alignment explanation
Indices: 101543308--101543351 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
101543298 GAATGTGCAT
101543308 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
101543330 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
101543352 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:101550483 original size:153 final size:153
Alignment explanation
Indices: 101550205--101550512 Score: 607
Period size: 153 Copynumber: 2.0 Consensus size: 153
101550195 GCGTAAAATA
101550205 AAAATCAAAAGATAAAGTCCACCAAAAGGTTCATCTCCCTAGGTATTTAGAAAATTAGTTCATGC
1 AAAATCAAAAGATAAAGTCCACCAAAAGGTTCATCTCCCTAGGTATTTAGAAAATTAGTTCATGC
*
101550270 TAGCAAATACAAACATCCAAAATATAGTATAGCTGCAAGAAACAAAGAAACTCATAATAATCTCC
66 TAGCAAATAAAAACATCCAAAATATAGTATAGCTGCAAGAAACAAAGAAACTCATAATAATCTCC
101550335 AAAGAAATCAAAAGGGACTCTTC
131 AAAGAAATCAAAAGGGACTCTTC
101550358 AAAATCAAAAGATAAAGTCCACCAAAAGGTTCATCTCCCTAGGTATTTAGAAAATTAGTTCATGC
1 AAAATCAAAAGATAAAGTCCACCAAAAGGTTCATCTCCCTAGGTATTTAGAAAATTAGTTCATGC
101550423 TAGCAAATAAAAACATCCAAAATATAGTATAGCTGCAAGAAACAAAGAAACTCATAATAATCTCC
66 TAGCAAATAAAAACATCCAAAATATAGTATAGCTGCAAGAAACAAAGAAACTCATAATAATCTCC
101550488 AAAGAAATCAAAAGGGACTCTTC
131 AAAGAAATCAAAAGGGACTCTTC
101550511 AA
1 AA
101550513 TCTTGATGGA
Statistics
Matches: 154, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
153 154 1.00
ACGTcount: A:0.47, C:0.19, G:0.12, T:0.22
Consensus pattern (153 bp):
AAAATCAAAAGATAAAGTCCACCAAAAGGTTCATCTCCCTAGGTATTTAGAAAATTAGTTCATGC
TAGCAAATAAAAACATCCAAAATATAGTATAGCTGCAAGAAACAAAGAAACTCATAATAATCTCC
AAAGAAATCAAAAGGGACTCTTC
Found at i:101553581 original size:2 final size:2
Alignment explanation
Indices: 101553574--101553600 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
101553564 TAGGCCATTT
101553574 AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC A
101553601 TATATATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:101565601 original size:13 final size:13
Alignment explanation
Indices: 101565583--101565612 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
101565573 CTCAATCAAA
101565583 TTTTTTTTC-ATT
1 TTTTTTTTCTATT
101565595 TTTTTTTTCTATT
1 TTTTTTTTCTATT
101565608 TTTTT
1 TTTTT
101565613 AGAGAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.53
13 8 0.47
ACGTcount: A:0.07, C:0.07, G:0.00, T:0.87
Consensus pattern (13 bp):
TTTTTTTTCTATT
Found at i:101582476 original size:22 final size:22
Alignment explanation
Indices: 101582451--101582492 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
101582441 TGATAATCTT
101582451 TAATATATA-ATTATATCTTTTA
1 TAATATATATATTA-ATCTTTTA
*
101582473 TAATTTATATATTAATCTTT
1 TAATATATATATTAATCTTT
101582493 ATCAACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (22 bp):
TAATATATATATTAATCTTTTA
Found at i:101604529 original size:40 final size:40
Alignment explanation
Indices: 101604483--101604667 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 40
101604473 CTTGCGCAAG
* * *
101604483 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
101604523 GCCTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
101604563 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
101604603 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
* *
101604644 GCCTTCAGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
101604668 CATTCGAATA
Statistics
Matches: 120, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 1 0.01
40 91 0.76
41 28 0.23
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:101613949 original size:45 final size:46
Alignment explanation
Indices: 101613867--101613985 Score: 143
Period size: 45 Copynumber: 2.6 Consensus size: 46
101613857 CTTGTAGCCG
* * * *
101613867 ATGCATGTTCCAAACATGTCTTACACTGGTTTACATCTCGAGGCC-
1 ATGCATGTCCCAAACATGTCTTACACTGCTCTACATCTCAAGGCCT
*
101613912 ATGCATGTCCCAAACATGTCTTACACTAGCTCT-CATCTCAATGCCT
1 ATGCATGTCCCAAACATGTCTTACACT-GCTCTACATCTCAAGGCCT
* *
101613958 ATCCATGTCCCAGACATGGTCTTACACT
1 ATGCATGTCCCAAACAT-GTCTTACACT
101613986 TTCCCTCATA
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
45 36 0.56
46 18 0.28
47 10 0.16
ACGTcount: A:0.25, C:0.30, G:0.14, T:0.30
Consensus pattern (46 bp):
ATGCATGTCCCAAACATGTCTTACACTGCTCTACATCTCAAGGCCT
Found at i:101622669 original size:47 final size:46
Alignment explanation
Indices: 101622567--101622691 Score: 153
Period size: 47 Copynumber: 2.7 Consensus size: 46
101622557 TCTCGAGGCC
* * * *
101622567 GATGCATGTCTCAGACATGTCTTACACTAGCTCTCGTATTAATGCT
1 GATGCATGTCCCAGACATGTCTTTCACTAGCTCTCATAATAATGCT
* *
101622613 GATGCCATGTCCCAGACATGGTCTTTCATTGGCTCTCATAAT-ATGGCT
1 GATG-CATGTCCCAGACAT-GTCTTTCACTAGCTCTCATAATAAT-GCT
*
101622661 GATGCATGTTCCAGACATGTCTTTCACTAGC
1 GATGCATGTCCCAGACATGTCTTTCACTAGC
101622692 ACACAAATAA
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
46 15 0.22
47 28 0.42
48 24 0.36
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTTCACTAGCTCTCATAATAATGCT
Found at i:101626815 original size:11 final size:10
Alignment explanation
Indices: 101626783--101626813 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
101626773 CTAGTCAAGC
101626783 CACGAAAAAA
1 CACGAAAAAA
101626793 CACCGAAAAAA
1 CA-CGAAAAAA
101626804 CACGAAAAAA
1 CACGAAAAAA
101626814 ACTAGTCAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.68, C:0.23, G:0.10, T:0.00
Consensus pattern (10 bp):
CACGAAAAAA
Found at i:101633538 original size:16 final size:16
Alignment explanation
Indices: 101633517--101633548 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
101633507 ATCCCTCTAC
101633517 ATAGATTATGGTATAT
1 ATAGATTATGGTATAT
101633533 ATAGATTATGGTATAT
1 ATAGATTATGGTATAT
101633549 CCAACATCAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.44
Consensus pattern (16 bp):
ATAGATTATGGTATAT
Found at i:101639869 original size:16 final size:16
Alignment explanation
Indices: 101639822--101639871 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
101639812 GTTATATTCA
* *
101639822 AACCGGTTGAGCTTCC
1 AACCGATTGAGCTTCT
* * *
101639838 AACCGACTAAGTTTCT
1 AACCGATTGAGCTTCT
101639854 AACCGATTGAGCTTCT
1 AACCGATTGAGCTTCT
101639870 AA
1 AA
101639872 TAATTTATAA
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (16 bp):
AACCGATTGAGCTTCT
Found at i:101641124 original size:23 final size:23
Alignment explanation
Indices: 101641076--101641241 Score: 160
Period size: 23 Copynumber: 7.3 Consensus size: 23
101641066 TATTTGGTTG
*
101641076 TATATTTGG-TGTGTTGGGAGGC
1 TATATTTGGTTGTGTTTGGAGGC
* * *
101641098 TATATTTGGTTATGTTTGGATGA
1 TATATTTGGTTGTGTTTGGAGGC
* * *
101641121 TATATTTCGTTGTATTGGGAGGC
1 TATATTTGGTTGTGTTTGGAGGC
*
101641144 TATATTTGGTTGTGTTTGGAGGG
1 TATATTTGGTTGTGTTTGGAGGC
* *
101641167 TATATTTGGTTGT-ATTGGAGGG
1 TATATTTGGTTGTGTTTGGAGGC
* * *
101641189 TATGTTTGGTTGTGTTTTGA-AC
1 TATATTTGGTTGTGTTTGGAGGC
*
101641211 GTA-AATTGGTTGTGTTTGGAGGC
1 -TATATTTGGTTGTGTTTGGAGGC
*
101641234 TATGTTTG
1 TATATTTG
101641242 TTTCTGTTCG
Statistics
Matches: 113, Mismatches: 26, Indels: 9
0.76 0.18 0.06
Matches are distributed among these distances:
22 45 0.40
23 68 0.60
ACGTcount: A:0.16, C:0.03, G:0.34, T:0.47
Consensus pattern (23 bp):
TATATTTGGTTGTGTTTGGAGGC
Found at i:101641230 original size:45 final size:45
Alignment explanation
Indices: 101641075--101641241 Score: 142
Period size: 45 Copynumber: 3.7 Consensus size: 45
101641065 ATATTTGGTT
* * * * *
101641075 GTATATTTGG-TGTGTTGGGAGGCTATATTTGGTTATGTTTGG-AT
1 GTATAATTGGTTGT-TTTGGAGGCTATGTTTGGTTGTGTTTGGAAC
* * * * **
101641119 GATATATTTCGTTGTATTGGGAGGCTATATTTGGTTGTGTTTGGAGG
1 G-TATAATTGGTTGT-TTTGGAGGCTATGTTTGGTTGTGTTTGGAAC
* * * *
101641166 GTATATTTGGTTGTATTGGAGGGTATGTTTGGTTGTGTTTTGAAC
1 GTATAATTGGTTGTTTTGGAGGCTATGTTTGGTTGTGTTTGGAAC
101641211 GTA-AATTGGTTGTGTTTGGAGGCTATGTTTG
1 GTATAATTGGTTGT-TTTGGAGGCTATGTTTG
101641242 TTTCTGTTCG
Statistics
Matches: 103, Mismatches: 16, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
44 10 0.10
45 50 0.49
46 42 0.41
47 1 0.01
ACGTcount: A:0.16, C:0.03, G:0.34, T:0.47
Consensus pattern (45 bp):
GTATAATTGGTTGTTTTGGAGGCTATGTTTGGTTGTGTTTGGAAC
Found at i:101647031 original size:19 final size:19
Alignment explanation
Indices: 101646994--101647041 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
101646984 TCTTTATCAT
*
101646994 TTATCATTTA--TCGGGCA
1 TTATCATTTATTTCAGGCA
101647011 TTATCATTTATTTCAGGCA
1 TTATCATTTATTTCAGGCA
101647030 TTATCATTTATT
1 TTATCATTTATT
101647042 GGGCTTTGTC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
17 10 0.36
19 18 0.64
ACGTcount: A:0.25, C:0.15, G:0.10, T:0.50
Consensus pattern (19 bp):
TTATCATTTATTTCAGGCA
Found at i:101647281 original size:21 final size:21
Alignment explanation
Indices: 101647255--101647300 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
101647245 TATACGAGTA
*
101647255 AATTT-AACATCAATTTAATAC
1 AATTTAAAC-TCAATTCAATAC
*
101647276 AATTTAAACTCAATTCAATCC
1 AATTTAAACTCAATTCAATAC
101647297 AATT
1 AATT
101647301 CACATCTTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 19 0.86
22 3 0.14
ACGTcount: A:0.46, C:0.17, G:0.00, T:0.37
Consensus pattern (21 bp):
AATTTAAACTCAATTCAATAC
Found at i:101654963 original size:22 final size:22
Alignment explanation
Indices: 101654937--101654980 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
101654927 CAAACACAAT
101654937 AAACTCAACAGGAAAATTCTTA
1 AAACTCAACAGGAAAATTCTTA
*
101654959 AAACTCAACAGGCAAATTCTTA
1 AAACTCAACAGGAAAATTCTTA
101654981 CTAGATACCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.48, C:0.20, G:0.09, T:0.23
Consensus pattern (22 bp):
AAACTCAACAGGAAAATTCTTA
Found at i:101657520 original size:40 final size:40
Alignment explanation
Indices: 101657407--101657544 Score: 159
Period size: 40 Copynumber: 3.5 Consensus size: 40
101657397 CTCGAGAATA
* * ** *
101657407 TAAAGTGGATAGGATTCGTTCCTGATTCACTATAATACCT
1 TAAAGTGAATAGGATTTGTTCCTGATTCACTATGGTAACT
* * *
101657447 CAAAGTGGATAGGATTTGTTCCTGATTCACTATGGTAATT
1 TAAAGTGAATAGGATTTGTTCCTGATTCACTATGGTAACT
* *
101657487 TAAAGTGAATAGGATTTATTCCTAATTCACTATGGTAACT
1 TAAAGTGAATAGGATTTGTTCCTGATTCACTATGGTAACT
* **
101657527 TAAGGCAAATAGGATTTG
1 TAAAGTGAATAGGATTTG
101657545 ACCTGAAAAG
Statistics
Matches: 83, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 83 1.00
ACGTcount: A:0.32, C:0.13, G:0.20, T:0.36
Consensus pattern (40 bp):
TAAAGTGAATAGGATTTGTTCCTGATTCACTATGGTAACT
Found at i:101661115 original size:46 final size:47
Alignment explanation
Indices: 101661046--101661165 Score: 136
Period size: 47 Copynumber: 2.6 Consensus size: 47
101661036 ATTCATATAT
* * * *
101661046 CGATGCCATAGCCCA-ACTCTGGTCTTACAC-GAATCACATATCTCAC
1 CGATGCCATATCCCAGA-TATGGTCTTACACAGAAGCACATATCACAC
* * * *
101661092 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTACACAGAAGCACATATCACAC
*
101661139 CAATGCCATATCCCAGATATGGTCTTA
1 CGATGCCATATCCCAGATATGGTCTTA
101661166 TACGGAAATC
Statistics
Matches: 62, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
46 24 0.39
47 38 0.61
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (47 bp):
CGATGCCATATCCCAGATATGGTCTTACACAGAAGCACATATCACAC
Found at i:101661236 original size:31 final size:31
Alignment explanation
Indices: 101661201--101661349 Score: 212
Period size: 31 Copynumber: 4.8 Consensus size: 31
101661191 CTTTTCACTT
*
101661201 GTAGCTGAAGCTACCACTATTCACTGATCAG
1 GTAGCTGAAGCTACCACTTTTCACTGATCAG
* *
101661232 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCTGAAGCTACCACTTTTCACTGATCAG
* *
101661263 GTAGC-CAGAGCTACCACTTTTCACTGATCAT
1 GTAGCTGA-AGCTACCACTTTTCACTGATCAG
*
101661294 GTAGCCAGAA-CTACCACTTTTCACTGATCAG
1 GTAG-CTGAAGCTACCACTTTTCACTGATCAG
101661325 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCTGAAGCTACCACTTTTCACT
101661350 TGTCATTTGT
Statistics
Matches: 105, Mismatches: 9, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
30 4 0.04
31 98 0.93
32 2 0.02
33 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (31 bp):
GTAGCTGAAGCTACCACTTTTCACTGATCAG
Found at i:101666138 original size:40 final size:40
Alignment explanation
Indices: 101666078--101666188 Score: 116
Period size: 40 Copynumber: 2.8 Consensus size: 40
101666068 TCAAGAATAT
* *
101666078 AAAGTGTATAGGATTCGTTCCTAATTCACTAT-AATACTTC
1 AAAGTGAATAGGATTTGTTCCTAATTCACTATGAATA-TTC
* * * ** *
101666118 AAAGTGGATAGGATTTGTTCCTGATTCACTGTGGTTATTT
1 AAAGTGAATAGGATTTGTTCCTAATTCACTATGAATATTC
* *
101666158 AAAATGAATAGGATTTATTCCTAATTCACTA
1 AAAGTGAATAGGATTTGTTCCTAATTCACTA
101666189 CAGTAACTTA
Statistics
Matches: 58, Mismatches: 12, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
40 56 0.97
41 2 0.03
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.39
Consensus pattern (40 bp):
AAAGTGAATAGGATTTGTTCCTAATTCACTATGAATATTC
Found at i:101671027 original size:23 final size:23
Alignment explanation
Indices: 101671001--101671131 Score: 154
Period size: 23 Copynumber: 5.7 Consensus size: 23
101670991 AAAGTGTGCA
* *
101671001 TATATTTGGTTGTGTTGGGAGAC
1 TATATTTGGTTGTGTTTGGAGGC
*
101671024 TATATTTGGTTGTGTTTGGAGGG
1 TATATTTGGTTGTGTTTGGAGGC
** *
101671047 TATATTTGGTTGCATTGGGAGGC
1 TATATTTGGTTGTGTTTGGAGGC
** *
101671070 TATATTTGGTCATGTTTGGAGGG
1 TATATTTGGTTGTGTTTGGAGGC
*
101671093 TATATTTGGTTGTGTTTGAAGGC
1 TATATTTGGTTGTGTTTGGAGGC
* *
101671116 TATGTTTAGTTGTGTT
1 TATATTTGGTTGTGTT
101671132 CGGTGGGTGA
Statistics
Matches: 89, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 89 1.00
ACGTcount: A:0.16, C:0.04, G:0.34, T:0.47
Consensus pattern (23 bp):
TATATTTGGTTGTGTTTGGAGGC
Found at i:101671073 original size:46 final size:46
Alignment explanation
Indices: 101671001--101671152 Score: 182
Period size: 46 Copynumber: 3.3 Consensus size: 46
101670991 AAAGTGTGCA
*
101671001 TATATTTGGTTGTGTTGGGAGACTATATTTGGTTGTGTTTGGAGGG
1 TATATTTGGTTGTGTTGGGAGGCTATATTTGGTTGTGTTTGGAGGG
** **
101671047 TATATTTGGTTGCATTGGGAGGCTATATTTGGTCATGTTTGGAGGG
1 TATATTTGGTTGTGTTGGGAGGCTATATTTGGTTGTGTTTGGAGGG
* * * * * *
101671093 TATATTTGGTTGTGTTTGAAGGCTATGTTTAGTTGTGTTCGGTGGG
1 TATATTTGGTTGTGTTGGGAGGCTATATTTGGTTGTGTTTGGAGGG
*
101671139 T-GA-TTGGTTGTGTT
1 TATATTTGGTTGTGTT
101671153 TGGTGGGTGA
Statistics
Matches: 90, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
44 11 0.12
45 1 0.01
46 78 0.87
ACGTcount: A:0.14, C:0.04, G:0.36, T:0.46
Consensus pattern (46 bp):
TATATTTGGTTGTGTTGGGAGGCTATATTTGGTTGTGTTTGGAGGG
Found at i:101671150 original size:21 final size:21
Alignment explanation
Indices: 101671124--101671163 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
101671114 GCTATGTTTA
101671124 GTTGTGTTCGGTGGGTGATTG
1 GTTGTGTTCGGTGGGTGATTG
*
101671145 GTTGTGTTTGGTGGGTGAT
1 GTTGTGTTCGGTGGGTGAT
101671164 AGCTTTATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.05, C:0.03, G:0.47, T:0.45
Consensus pattern (21 bp):
GTTGTGTTCGGTGGGTGATTG
Found at i:101672063 original size:19 final size:19
Alignment explanation
Indices: 101672039--101672129 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
101672029 ATAATCTTCA
101672039 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
101672058 ATGATATGCAATCTTAGAC
1 ATGATATGCAATCTTAGAT
101672077 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
101672094 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
101672112 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
101672130 AGATATGATT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 15 0.22
18 16 0.24
19 36 0.54
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.35
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:101672110 original size:35 final size:37
Alignment explanation
Indices: 101672039--101672136 Score: 141
Period size: 35 Copynumber: 2.7 Consensus size: 37
101672029 ATAATCTTCA
101672039 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAC
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAC
*
101672077 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAC
101672112 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
101672137 ATTTTGTAAT
Statistics
Matches: 56, Mismatches: 1, Indels: 8
0.86 0.02 0.12
Matches are distributed among these distances:
35 21 0.38
36 19 0.34
37 10 0.18
38 6 0.11
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAC
Found at i:101672155 original size:22 final size:22
Alignment explanation
Indices: 101672108--101672152 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
101672098 TTGCAATCTT
*
101672108 AGATATGATATGCAATCTTAGA
1 AGATATGATATGCAATATTAGA
* *
101672130 AGATATGATTTTGTAATATTAGA
1 AGATATGA-TATGCAATATTAGA
101672153 GATTTAATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.40, C:0.04, G:0.18, T:0.38
Consensus pattern (22 bp):
AGATATGATATGCAATATTAGA
Found at i:101685370 original size:132 final size:132
Alignment explanation
Indices: 101685128--101685971 Score: 1375
Period size: 132 Copynumber: 6.4 Consensus size: 132
101685118 TGAAGTCATT
* *
101685128 AAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGCAGATCGAAGATAGCAGGTCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
*
101685193 TATTGATAGGAAGTGGATCCAGGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
101685258 AG
131 AG
* * * *
101685260 AAAGCAGATCTTGTCTTCATGTATTGGCGTAAAGTAGATCGAAGGTAGCAGATCCTATCTTTCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
* *
101685325 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
101685390 AG
131 AG
101685392 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
* *
101685457 TATTGATAGGAAGTGGATCCAATATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCAC
66 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
101685522 A-
131 AG
* * *
101685523 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTTCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
* *
101685588 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
101685653 AG
131 AG
*
101685655 AAAGCAGATCTTGTCTTCATGTATTGGTGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
*
101685720 TATTGATAGGAAGTGGATCCAATATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
101685785 AG
131 AG
101685787 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
* * * * * *
101685852 TATTGATAGGAAGTCGATCCAAGATGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTATATTGA
66 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
101685917 AG
131 AG
** * * * * * *
101685919 ATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAG
1 AAAGCAGATCTTGTCTTCATGTA-TTGGC-GTGAAGTAGATCGAAGATAGCAG
101685972 ATTTTACCTC
Statistics
Matches: 662, Mismatches: 47, Indels: 4
0.93 0.07 0.01
Matches are distributed among these distances:
131 124 0.19
132 514 0.78
133 5 0.01
134 19 0.03
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (132 bp):
AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTA
TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
AG
Found at i:101685863 original size:395 final size:395
Alignment explanation
Indices: 101685128--101685973 Score: 1388
Period size: 395 Copynumber: 2.1 Consensus size: 395
101685118 TGAAGTCATT
* *
101685128 AAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGCAGATCGAAGATAGCAGGTCCTATCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGCAGATCGAAGATAGCAGATCCTATCTTCCTA
*
101685193 TATTGATAGGAAGTGGATCCAGGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
* *
101685258 AGAAAGCAGATCTTGTCTTCATGTATTGGCGTAAAGTAGATCGAAGGTAGCAGATCCTATCTTTC
131 AGAAAGCAGATCTTGTCTTCATGTATTGGCGTAAAGTAGATCGAAGATAGCAGATCCTATCTTCC
* *
101685323 TATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATC
196 TATATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATC
101685388 GCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTT
261 GCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTT
* * *
101685453 CCTATATTGATAGGAAGTGGATCCAATATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGA
326 CCTATATTGATAGGAAGTCGATCCAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGA
101685518 TCACA
391 TCACA
* * *
101685523 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTTCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGCAGATCGAAGATAGCAGATCCTATCTTCCTA
* *
101685588 TATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
66 TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
* * *
101685653 AGAAAGCAGATCTTGTCTTCATGTATTGGTGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCC
131 AGAAAGCAGATCTTGTCTTCATGTATTGGCGTAAAGTAGATCGAAGATAGCAGATCCTATCTTCC
*
101685718 TATATTGATAGGAAGTGGATCCAATATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATC
196 TATATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATC
101685783 GCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTT
261 GCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTT
* *
101685848 CCTATATTGATAGGAAGTCGATCCAAGATGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTATA
326 CCTATATTGATAGGAAGTCGATCCAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGA
*
101685913 TTGA-A
391 -TCACA
** * * * * *
101685918 GATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGAT
1 -AAAGCAGATCTTGTCTTCATGTA-TTGGC-GTGAAGCAGATCGAAGATAGCAGAT
101685974 TTTACCTCCC
Statistics
Matches: 416, Mismatches: 31, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
395 370 0.89
396 21 0.05
397 5 0.01
398 20 0.05
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (395 bp):
AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGCAGATCGAAGATAGCAGATCCTATCTTCCTA
TATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGC
AGAAAGCAGATCTTGTCTTCATGTATTGGCGTAAAGTAGATCGAAGATAGCAGATCCTATCTTCC
TATATTGATAGGAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATC
GCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTT
CCTATATTGATAGGAAGTCGATCCAAGATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGA
TCACA
Found at i:101686082 original size:46 final size:46
Alignment explanation
Indices: 101686021--101686465 Score: 208
Period size: 46 Copynumber: 9.9 Consensus size: 46
101686011 ATAATTCTAT
* *
101686021 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATTTTGC
1 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATGGCAGATTTTAC
* * * * **
101686067 CTTCCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGCAGATTTTAC
1 CTCCCTGTATCTGGCAGTGGAA-TAGATTGAAGATGGCAGATTTTAC
** * * ** ** * * *
101686113 CTCCCTG-A-C-CACAGTGGAGTACATTGAAGCCGATA-ACTCTAT
1 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATGGCAGATTTTAC
* * * *
101686155 CTCCCTGTATCTGGCAGTGGAATAGATTGAATATTGCAGATCTTGC
1 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATGGCAGATTTTAC
* * * *
101686201 CTTCCTGTAT-TCGGCAG-CGAAGCAGATCGAAGATGGCAGATTTTAC
1 CTCCCTGTATCT-GGCAGTGGAA-TAGATTGAAGATGGCAGATTTTAC
* * * ** ** * * *
101686247 CTCCCTG-A-CT-ACAGTGGAGTACATTGAAGCCGATA-ACTCTAT
1 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATGGCAGATTTTAC
* * * *
101686289 CTCACTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATGGCAGATTTTAC
* * * *
101686335 CTTCCTGTAT-TAGGCAG-CGAAGCAGATCGAAGATGGCAGATTTTAC
1 CTCCCTGTATCT-GGCAGTGGAA-TAGATTGAAGATGGCAGATTTTAC
** * * * *
101686381 CTCCCTGTGA-CT-ATAGTGGAGTACATTG-A-A--GCCGATTACTCTAT
1 CTCCCTGT-ATCTGGCAGTGGAATAGATTGAAGATGGCAGATT--T-TAC
*
101686425 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGAT
1 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATGGCAGAT
101686466 CCTGCCTTCC
Statistics
Matches: 272, Mismatches: 99, Indels: 53
0.64 0.23 0.12
Matches are distributed among these distances:
41 6 0.02
42 21 0.08
43 28 0.10
44 20 0.07
45 65 0.24
46 124 0.46
47 3 0.01
49 5 0.02
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.29
Consensus pattern (46 bp):
CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATGGCAGATTTTAC
Found at i:101686086 original size:134 final size:134
Alignment explanation
Indices: 101685912--101686481 Score: 987
Period size: 134 Copynumber: 4.2 Consensus size: 134
101685902 GGTGAAGTAT
101685912 ATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTT
1 ATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTT
* *
101685977 ACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATAATTCTATCTCCCTGTATCTGGCAGTGGA
66 ACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGA
101686042 ATAG
131 ATAG
*
101686046 ATTGAAGATTGCAGATTTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTT
1 ATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTT
101686111 ACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGA
66 ACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGA
101686176 ATAG
131 ATAG
* * *
101686180 ATTGAATATTGCAGATCTTGCCTTCCTGTATTCGGCAGCGAAGCAGATCGAAGATGGCAGATTTT
1 ATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTT
* *
101686245 ACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTATCTCACTGTATCTGGCAGTGGA
66 ACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGA
101686310 ATAG
131 ATAG
* *
101686314 ATTGAAGATTGCAGATCTTGCCTTCCTGTATTAGGCAGCGAAGCAGATCGAAGATGGCAGATTTT
1 ATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTT
* * *
101686379 ACCTCCCTGTGACTATAGTGGAGTACATTGAAGCCGATTACTCTATCTCCCTGTATCTGGCAGTG
66 ACCTCCC--TGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTG
101686444 GAATAG
129 GAATAG
* *
101686450 ATTGAAGATTGCAGATCCTGCCTTCCTATATT
1 ATTGAAGATTGCAGATCTTGCCTTCCTGTATT
101686482 GGTAGGAAGT
Statistics
Matches: 418, Mismatches: 16, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
134 329 0.79
136 89 0.21
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (134 bp):
ATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTT
ACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGA
ATAG
Found at i:101686667 original size:43 final size:40
Alignment explanation
Indices: 101686620--101686790 Score: 137
Period size: 40 Copynumber: 4.2 Consensus size: 40
101686610 CTTGGGCAAC
*
101686620 AGTGGAATAGATCGAAGATTACAATCTTATCTCCCTAAGCAGT
1 AGTGGAATAGATCG--CATTA-AATCTTATCTCCCTAAGCAGT
* *
101686663 AGTGGAGTAGATCGCATTAAGTCTTATCTCCCTAAGCAGT
1 AGTGGAATAGATCGCATTAAATCTTATCTCCCTAAGCAGT
** *** ** * *
101686703 AGTGGAGCAGATAAAACCACAGATCTTATTTCCCTAAGCAAT
1 AGTGGAATAGATCGCATTA-A-ATCTTATCTCCCTAAGCAGT
* * * *
101686745 AGT-GAAGCAGATCGCATCAAGTCTTATCTCCCTAAGTAGT
1 AGTGGAA-TAGATCGCATTAAATCTTATCTCCCTAAGCAGT
101686785 AGTGGA
1 AGTGGA
101686791 GCAGACTAAA
Statistics
Matches: 103, Mismatches: 21, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
40 52 0.50
41 10 0.10
42 28 0.27
43 13 0.13
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (40 bp):
AGTGGAATAGATCGCATTAAATCTTATCTCCCTAAGCAGT
Found at i:101686696 original size:40 final size:40
Alignment explanation
Indices: 101686644--101686795 Score: 196
Period size: 40 Copynumber: 3.8 Consensus size: 40
101686634 AAGATTACAA
* *
101686644 TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATTAAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
*** *
101686684 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATAAAACCACAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCA-AG
* * *
101686725 ATCTTATTTCCCTAAGCAATAGTGAAGCAGATCGCATCAAG
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
*
101686766 TCTTATCTCCCTAAGTAGTAGTGGAGCAGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA
101686796 CTAAAAACAC
Statistics
Matches: 93, Mismatches: 17, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
40 58 0.62
41 4 0.04
42 31 0.33
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (40 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
Found at i:101686738 original size:82 final size:83
Alignment explanation
Indices: 101686642--101686811 Score: 261
Period size: 82 Copynumber: 2.1 Consensus size: 83
101686632 CGAAGATTAC
* * * *
101686642 AATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATTAAGTCTTATCTCCCTAAGCAGTAGTG
1 AATCTTATCTCCCTAAGCAATAGTGAAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTG
*
101686707 GAGCAGA-TAAAACCACA
66 GAGCAGACTAAAAACACA
* * *
101686724 GATCTTATTTCCCTAAGCAATAGTGAAGCAGATCGCATCAAGTCTTATCTCCCTAAGTAGTAGTG
1 AATCTTATCTCCCTAAGCAATAGTGAAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTG
101686789 GAGCAGACTAAAAACACA
66 GAGCAGACTAAAAACACA
101686807 AATCT
1 AATCT
101686812 CATCCCCATG
Statistics
Matches: 78, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
82 65 0.83
83 13 0.17
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (83 bp):
AATCTTATCTCCCTAAGCAATAGTGAAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTG
GAGCAGACTAAAAACACA
Found at i:101686748 original size:42 final size:42
Alignment explanation
Indices: 101686643--101686811 Score: 157
Period size: 40 Copynumber: 4.1 Consensus size: 42
101686633 GAAGATTACA
* *** **
101686643 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATTA-AG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATAAAAACACAG
*
101686684 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATAAAACCACAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATAAAAACACAG
* * * *** *
101686725 ATCTTATTTCCCTAAGCAATAGTGAAGCAGATCGCATCA-AG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATAAAAACACAG
* *
101686766 -TCTTATCTCCCTAAGTAGTAGTGGAGCAGACTAAAAACACAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-TAAAAACACAG
101686808 ATCT
1 ATCT
101686812 CATCCCCATG
Statistics
Matches: 101, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
40 58 0.57
41 8 0.08
42 32 0.32
43 3 0.03
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (42 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATAAAAACACAG
Found at i:101687311 original size:23 final size:24
Alignment explanation
Indices: 101687253--101687316 Score: 71
Period size: 23 Copynumber: 2.7 Consensus size: 24
101687243 TTTAGGTGGG
* *
101687253 TTTTTGGTTTTTTGGAGAAGGATTG
1 TTTTT-GTTTTTTGGAGGAGGATTC
101687278 TTCTTTG--TTTTGGAGGAGG-TTC
1 TT-TTTGTTTTTTGGAGGAGGATTC
101687300 TTTTTGTTTTTTGGAGG
1 TTTTTGTTTTTTGGAGG
101687317 TGTTTTTTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
21 4 0.12
22 4 0.12
23 20 0.59
25 3 0.09
26 3 0.09
ACGTcount: A:0.11, C:0.03, G:0.31, T:0.55
Consensus pattern (24 bp):
TTTTTGTTTTTTGGAGGAGGATTC
Found at i:101687669 original size:3 final size:3
Alignment explanation
Indices: 101687655--101687737 Score: 54
Period size: 3 Copynumber: 28.3 Consensus size: 3
101687645 GAGCTTTGTT
* *
101687655 TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
101687699 TT- TCTCA TGTA TATA TT- TT- TTA -TA TTA TTA TTA -TA TTA T
1 TTA T-T-A T-TA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
101687738 ATATGCCCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
2 12 0.18
3 45 0.69
4 6 0.09
5 2 0.03
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:101687738 original size:27 final size:26
Alignment explanation
Indices: 101687656--101687741 Score: 73
Period size: 27 Copynumber: 3.1 Consensus size: 26
101687646 AGCTTTGTTT
* * *
101687656 TATTATTTTATTATTTTTACTATTATT
1 TATTTTTTTATTATTATTA-TATTATA
* * *
101687683 TATATTATTATTATTATTTCTCATGTATA
1 TATTTTTTTATTATTA-TTAT-AT-TATA
101687712 TATTTTTTATATTATTATTATATTATA
1 TATTTTTT-TATTATTATTATATTATA
101687739 TAT
1 TAT
101687742 GCCCTCTTCA
Statistics
Matches: 46, Mismatches: 9, Indels: 8
0.73 0.14 0.13
Matches are distributed among these distances:
27 20 0.43
28 6 0.13
29 12 0.26
30 8 0.17
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.65
Consensus pattern (26 bp):
TATTTTTTTATTATTATTATATTATA
Found at i:101687979 original size:18 final size:19
Alignment explanation
Indices: 101687943--101687999 Score: 66
Period size: 17 Copynumber: 3.1 Consensus size: 19
101687933 ACTATTACTA
*
101687943 TTATATATTAGTGTATATTT
1 TTATATA-TAGTATATATTT
*
101687963 TTATGTATA-TATATA-TT
1 TTATATATAGTATATATTT
101687980 TTATATATAGTAT-TATTT
1 TTATATATAGTATATATTT
101687998 TT
1 TT
101688000 TATTACTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
17 12 0.38
18 12 0.38
19 2 0.06
20 6 0.19
ACGTcount: A:0.32, C:0.00, G:0.07, T:0.61
Consensus pattern (19 bp):
TTATATATAGTATATATTT
Found at i:101688101 original size:12 final size:12
Alignment explanation
Indices: 101688084--101688113 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
101688074 GTATTTCTAT
101688084 TATATACATATA
1 TATATACATATA
*
101688096 TATATACATTTA
1 TATATACATATA
101688108 TATATA
1 TATATA
101688114 GTATTATTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (12 bp):
TATATACATATA
Found at i:101690462 original size:220 final size:220
Alignment explanation
Indices: 101690076--101690889 Score: 1324
Period size: 220 Copynumber: 3.7 Consensus size: 220
101690066 GTAACAGGCT
* * * * * * **
101690076 AAAG-CATAGCAGATTTGACCTTCAGGTGTTTAAGCTGAAGCGGATCCAAGATGATTTAACATCT
1 AAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCT
* * * * *
101690140 ATGTATTGTCAGAGAACAAATCGAAGAAACAAATTTGGCATCTCCATATTCGACGGAGAGCAAAT
66 CTGTACTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCAACGGAGAGCAGAT
* * *
101690205 CGAAGACATAGCAGATCTAACCTTCAGATATTTTCACATCGAAGAAGATCCAAGATGATTTGGCA
131 CGAAGACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCA
*
101690270 TCCTTGCGTTTACAAGGAGCATATC
196 TCCTTGCGTTTACAAGGAGCAAATC
101690295 AAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCT
1 AAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCT
*
101690360 CTGTACTGTTAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCAACGGAGAGCAGAT
66 CTGTACTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCAACGGAGAGCAGAT
*
101690425 CAAAGACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCA
131 CGAAGACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCA
101690490 TCCTTGCGTTTACAAGGAGCAAATC
196 TCCTTGCGTTTACAAGGAGCAAATC
* *
101690515 GAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTAAAGCAGATCTAAGATGATTTGGCATCT
1 AAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCT
* * **
101690580 TTGTACTGTCAGAGAACAAATCGAAGAAATAGATTTGGCATCTCCATATTCAACGGAGAATAGAT
66 CTGTACTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCAACGGAGAGCAGAT
101690645 CGAAGACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCA
131 CGAAGACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCA
*
101690710 TCCTTGCGTTTACAAGGAGCAGATC
196 TCCTTGCGTTTACAAGGAGCAAATC
* * *
101690735 GAAGACATAGAAGATTTGGCTTTCACGTGTTTATGCTGAAGCAGATCTAAGATGATTTGGCATCT
1 AAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCT
* *
101690800 CTATACTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
66 CTGTACTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCAACGGAGAGCAGAT
* *
101690865 CGAAGACATAGAAGATCTGACCTTC
131 CGAAGACATAGCAGATCTAACCTTC
101690890 ATTGAAGCAA
Statistics
Matches: 555, Mismatches: 39, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
219 4 0.01
220 551 0.99
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (220 bp):
AAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCT
CTGTACTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCAACGGAGAGCAGAT
CGAAGACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCA
TCCTTGCGTTTACAAGGAGCAAATC
Found at i:101690939 original size:78 final size:78
Alignment explanation
Indices: 101690831--101691747 Score: 1197
Period size: 78 Copynumber: 11.8 Consensus size: 78
101690821 CGAAGAAACA
* * *
101690831 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGAAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
*
101690896 GCAAATCCAAGAT
66 GCAGATCCAAGAT
* * * * *
101690909 GATTTGGCATCTCTGTATTAGATGGGGAGCAGATCGAAGACACAGCAGAT-TGGACATTCATTGA
1 GATTTGGCATCTCTATATTAGACGGAGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
101690973 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* *
101690987 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
*
101691052 GTAGATCCAAGAT
66 GCAGATCCAAGAT
* * * * * * *
101691065 GATTTGGCATCTATGTATTAGATGGAGAGTAGATCGAAGACACAGTAGAT-TAGACCTTTATTGA
1 GATTTGGCATCTCTATATTAGACGGAGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
101691129 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* * *
101691143 GATTTGGCATCTCCATATTTGACGGAGAGCAGATCGAAGACATAGCAAATCTGACCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
*
101691208 GCAAATCCAAGAT
66 GCAGATCCAAGAT
* * * * *
101691221 GATTTGGCATCTCTGTATTAGATGG-GAAGCAGATCAAAGACACATCAGAT-TGGACCTTCATTG
1 GATTTGGCATCTCTATATTAGACGGAG-AGCAGATCGAAGACATAGCAGATCT-GACCTTCATTG
*
101691284 AAGTAGATCCAAGAT
64 AAGCAGATCCAAGAT
* * ** *
101691299 GATTTGGCATCTCCATATTCGACGGAGAGCAGATTAAAGACATAGCAAATCTGACCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
101691364 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * * *
101691377 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGTAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTATATTAGACGGAGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
101691441 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* * *
101691455 GATTTGGCATCTCCATATTCA-ACGGAGAGCAGATTGAAGACATAGCAGATTTGACCTTCATTGA
1 GATTTGGCATCTCTATATT-AGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGA
*
101691519 AGCAGATCAAAGAT
65 AGCAGATCCAAGAT
* * * * *
101691533 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGACACAGCAGATCTGACCTTTATTGAA
1 GATTTGGCATCTCTATATTAGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
101691598 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * * * *
101691611 GATTTGGTATTTCTGTATTAGACAGG-GA--AGATCAAAGACATAACAGAT-TGGACCTTCATTG
1 GATTTGGCATCTCTATATTAGAC-GGAGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTG
101691672 AAGCAGATCCAAGAT
64 AAGCAGATCCAAGAT
* * *
101691687 AATTTGGCATCTCTATATTAGACGGGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAT
1 GATTTGGCATCTCTATATTAGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
101691748 GTGTTTACAT
Statistics
Matches: 725, Mismatches: 96, Indels: 36
0.85 0.11 0.04
Matches are distributed among these distances:
75 3 0.00
76 62 0.09
77 6 0.01
78 645 0.89
79 9 0.01
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTATATTAGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:101691115 original size:156 final size:156
Alignment explanation
Indices: 101690831--101691747 Score: 1371
Period size: 156 Copynumber: 5.9 Consensus size: 156
101690821 CGAAGAAACA
*
101690831 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGAAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
* * *
101690896 GCAAATCCAAGATGATTTGGCATCTCTGTATTAGATGGGGAGCAGATCGAAGACACAGCAGATTG
66 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGTAGATTG
*
101690961 GACATTCATTGAAGCAGATCCAAGAT
131 GACCTTCATTGAAGCAGATCCAAGAT
101690987 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
* * * * * *
101691052 GTAGATCCAAGATGATTTGGCATCTATGTATTAGATGGAGAGTAGATCGAAGACACAGTAGATTA
66 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGTAGATTG
*
101691117 GACCTTTATTGAAGCAGATCCAAGAT
131 GACCTTCATTGAAGCAGATCCAAGAT
* *
101691143 GATTTGGCATCTCCATATTTGACGGAGAGCAGATCGAAGACATAGCAAATCTGACCTTCATTGAA
1 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
* * * *
101691208 GCAAATCCAAGATGATTTGGCATCTCTGTATTAGATGGGAAGCAGATCAAAGACACA-TCAGATT
66 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGT-AGATT
*
101691272 GGACCTTCATTGAAGTAGATCCAAGAT
130 GGACCTTCATTGAAGCAGATCCAAGAT
** *
101691299 GATTTGGCATCTCCATATTCGACGGAGAGCAGATTAAAGACATAGCAAATCTGACCTTCATTGAA
1 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
101691364 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGTAGATTG
66 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGTAGATTG
101691429 GACCTTCATTGAAGCAGATCCAAGAT
131 GACCTTCATTGAAGCAGATCCAAGAT
* * *
101691455 GATTTGGCATCTCCATATTCAACGGAGAGCAGATTGAAGACATAGCAGATTTGACCTTCATTGAA
1 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
* * *
101691520 GCAGATCAAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGACACAGCAGATCT
66 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGTAGAT-T
*
101691585 -GACCTTTATTGAAGCAGATCCAAGAT
130 GGACCTTCATTGAAGCAGATCCAAGAT
* * ** * * *
101691611 GATTTGGTATTTCTGTATTAGACAGG-GA--AGATCAAAGACATAACAGAT-TGGACCTTCATTG
1 GATTTGGCATCTCCATATTCGAC-GGAGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTG
* * * * *
101691672 AAGCAGATCCAAGATAATTTGGCATCTCTATATTAGACGGGGAGCAAATCGAAGACATAGCAGAT
64 AAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGTAGAT
101691737 CT-GACCTTCAT
129 -TGGACCTTCAT
101691748 GTGTTTACAT
Statistics
Matches: 704, Mismatches: 52, Indels: 12
0.92 0.07 0.02
Matches are distributed among these distances:
153 1 0.00
154 99 0.14
155 1 0.00
156 599 0.85
157 4 0.01
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.25
Consensus pattern (156 bp):
GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGTAGATTG
GACCTTCATTGAAGCAGATCCAAGAT
Found at i:101691840 original size:45 final size:46
Alignment explanation
Indices: 101691761--101691962 Score: 245
Period size: 45 Copynumber: 4.5 Consensus size: 46
101691751 TTTACATCGA
* *
101691761 AGCAGATC-CAAGATGACAGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAGATCAGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
*
101691806 AGCAAATCAG-AGATAACAGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAGATCAGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* * * * *
101691851 AGCAGAT-TGAAGA-AGCAGATTTGGCGTCTTTGTATTAGATGGGG
1 AGCAGATCAGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* * * *
101691895 AGCAGATC-GAAGATAACAAATTTGGCGTCTCTATATTAGACGAGG
1 AGCAGATCAGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
*
101691940 AGCAGATCA-AAGATAGCAGATTT
1 AGCAGATCAGAAGATAACAGATTT
101691963 CGCCTTCCTG
Statistics
Matches: 135, Mismatches: 17, Indels: 10
0.83 0.10 0.06
Matches are distributed among these distances:
44 40 0.30
45 95 0.70
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.25
Consensus pattern (46 bp):
AGCAGATCAGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
Found at i:101691895 original size:89 final size:90
Alignment explanation
Indices: 101691761--101691962 Score: 266
Period size: 89 Copynumber: 2.3 Consensus size: 90
101691751 TTTACATCGA
*
101691761 AGCAGATCCAAGAT-GACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATC-AGAGATAACA
1 AGCAGATCAAAGATAG-CAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGA-AGATAACA
* * *
101691824 GATTTGGCATCTCTGTATTAGACGGGG
64 AATTTGGCATCTCTATATTAGACGAGG
** * * * *
101691851 AGCAGATTGAAGA-AGCAGATTTGGCGTCTTTGTATTAGATGGGGAGCAGATCGAAGATAACAAA
1 AGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAAA
*
101691915 TTTGGCGTCTCTATATTAGACGAGG
66 TTTGGCATCTCTATATTAGACGAGG
101691940 AGCAGATCAAAGATAGCAGATTT
1 AGCAGATCAAAGATAGCAGATTT
101691963 CGCCTTCCTG
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
89 75 0.77
90 22 0.23
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.25
Consensus pattern (90 bp):
AGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAAA
TTTGGCATCTCTATATTAGACGAGG
Found at i:101692330 original size:14 final size:15
Alignment explanation
Indices: 101692311--101692366 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
101692301 AATCTTCAAT
101692311 GATATG-CAATCTTA
1 GATATGACAATCTTA
101692325 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
101692342 GATATGATTTCAATCTTA
1 GATATGA---CAATCTTA
101692360 GATATGA
1 GATATGA
101692367 TATACAATTT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.38
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:101692337 original size:17 final size:17
Alignment explanation
Indices: 101692317--101692368 Score: 86
Period size: 17 Copynumber: 3.0 Consensus size: 17
101692307 CAATGATATG
101692317 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
101692334 CAATCTTAGATATGATTT
1 CAATCTTAGATATGA-TA
101692352 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
101692369 TACAATTTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
17 16 0.50
18 16 0.50
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:101692357 original size:18 final size:18
Alignment explanation
Indices: 101692317--101692380 Score: 94
Period size: 18 Copynumber: 3.6 Consensus size: 18
101692307 CAATGATATG
101692317 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
*
101692334 CAATCTTAGATATGATTT
1 CAATCTTAGATATGATTA
101692352 CAATCTTAGATATGATATA
1 CAATCTTAGATATGAT-TA
*
101692371 CAATTTTAGA
1 CAATCTTAGA
101692381 AGATATGATT
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
17 15 0.36
18 17 0.40
19 10 0.24
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (18 bp):
CAATCTTAGATATGATTA
Found at i:101692694 original size:17 final size:17
Alignment explanation
Indices: 101692670--101692704 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
101692660 TGCTTCCCAT
*
101692670 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
101692688 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
101692705 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:101695050 original size:3 final size:3
Alignment explanation
Indices: 101695036--101695130 Score: 56
Period size: 3 Copynumber: 31.3 Consensus size: 3
101695026 ATGTATACCA
* * *
101695036 AAT AAT ACAT AAT AAT ATT AA- AAT AA- AAT AAT AAGT AAC AAT AGT
1 AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT
* *
101695081 GAA- AAT AAT AAGT -AT AAT AAT AA- ATAT AAT GAT ATAT AAA AAT AAT
1 -AAT AAT AAT AA-T AAT AAT AAT AAT A-AT AAT AAT A-AT AAT AAT AAT
101695127 AAT A
1 AAT A
101695131 TATATAAAAA
Statistics
Matches: 71, Mismatches: 10, Indels: 22
0.69 0.10 0.21
Matches are distributed among these distances:
2 8 0.11
3 51 0.72
4 12 0.17
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:101695078 original size:26 final size:27
Alignment explanation
Indices: 101695035--101695088 Score: 67
Period size: 26 Copynumber: 2.0 Consensus size: 27
101695025 TATGTATACC
* *
101695035 AAATAATACATAATAATA-TTAAAATA
1 AAATAATACATAACAATAGTGAAAATA
101695061 AAATAATA-AGTAACAATAGTGAAAATA
1 AAATAATACA-TAACAATAGTGAAAATA
101695088 A
1 A
101695089 TAAGTATAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 1 0.04
26 15 0.62
27 8 0.33
ACGTcount: A:0.65, C:0.04, G:0.06, T:0.26
Consensus pattern (27 bp):
AAATAATACATAACAATAGTGAAAATA
Found at i:101695119 original size:16 final size:16
Alignment explanation
Indices: 101695094--101695139 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
101695084 AATAATAAGT
*
101695094 ATAATA-ATAAATATA
1 ATAATATATAAAAATA
*
101695109 ATGATATATAAAAATA
1 ATAATATATAAAAATA
101695125 ATAATATATATAAAA
1 ATAATATATA-AAAA
101695140 AGTATATATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
15 5 0.19
16 17 0.65
17 4 0.15
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (16 bp):
ATAATATATAAAAATA
Found at i:101695123 original size:18 final size:17
Alignment explanation
Indices: 101695082--101695151 Score: 72
Period size: 18 Copynumber: 3.9 Consensus size: 17
101695072 AACAATAGTG
101695082 AAAATAATAAGTATA-ATA
1 AAAAT-ATAA-TATATATA
101695100 ATAAATATAATGATATATA
1 A-AAATATAAT-ATATATA
101695119 AAAATAATAATATATATA
1 AAAAT-ATAATATATATA
101695137 AAAAGTAT-ATATATA
1 AAAA-TATAATATATA
101695152 CATGTATAAT
Statistics
Matches: 47, Mismatches: 0, Indels: 11
0.81 0.00 0.19
Matches are distributed among these distances:
17 8 0.17
18 25 0.53
19 14 0.30
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (17 bp):
AAAATATAATATATATA
Found at i:101695395 original size:3 final size:3
Alignment explanation
Indices: 101695377--101695425 Score: 55
Period size: 3 Copynumber: 16.7 Consensus size: 3
101695367 AAATATACAT
* * * *
101695377 TAA TAT TAA CAA TAA TAA TAA TAA TAG TAA TAC TAA TAA TAA TAA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
101695424 TA
1 TA
101695426 CAAAAACAAA
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:101697200 original size:5 final size:5
Alignment explanation
Indices: 101697190--101697217 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
101697180 CTCTTGATGC
101697190 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
101697218 GGAGTTGGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:101697442 original size:8 final size:10
Alignment explanation
Indices: 101697420--101697444 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
101697410 AATTTTTTTC
101697420 ATATATGATT
1 ATATATGATT
101697430 ATATATGATT
1 ATATATGATT
101697440 ATATA
1 ATATA
101697445 GATAGGTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (10 bp):
ATATATGATT
Found at i:101698674 original size:17 final size:17
Alignment explanation
Indices: 101698636--101698699 Score: 58
Period size: 17 Copynumber: 3.6 Consensus size: 17
101698626 ATGTCATATC
*
101698636 AATAAATAAT-TTTAAAT
1 AATAAA-AATATTTAAAA
*
101698653 TATAAAAATATTTAAAA
1 AATAAAAATATTTAAAA
* *
101698670 AATAAAAAAATTCAAAAA
1 AATAAAAATATT-TAAAA
101698688 AATATAAAATAT
1 AATA-AAAATAT
101698700 AAAAAAGTCA
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
16 3 0.08
17 21 0.55
18 8 0.21
19 6 0.16
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (17 bp):
AATAAAAATATTTAAAA
Found at i:101698677 original size:18 final size:19
Alignment explanation
Indices: 101698656--101698731 Score: 63
Period size: 18 Copynumber: 4.2 Consensus size: 19
101698646 TTTAAATTAT
*
101698656 AAAAATATT-TAAAAAATA
1 AAAAATATTCAAAAAAATA
101698674 AAAAA-ATTCAAAAAAATA
1 AAAAATATTCAAAAAAATA
* *
101698692 TAAAATA-T-AAAAAAGTCA
1 AAAAATATTCAAAAAAAT-A
*
101698710 TAAAA-ATTCAAAAAAATTA
1 AAAAATATTCAAAAAAA-TA
101698729 AAA
1 AAA
101698732 TACATATGAA
Statistics
Matches: 47, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
17 11 0.23
18 25 0.53
19 10 0.21
20 1 0.02
ACGTcount: A:0.72, C:0.04, G:0.01, T:0.22
Consensus pattern (19 bp):
AAAAATATTCAAAAAAATA
Found at i:101698686 original size:10 final size:9
Alignment explanation
Indices: 101698649--101698731 Score: 55
Period size: 10 Copynumber: 9.0 Consensus size: 9
101698639 AAATAATTTT
101698649 AAATTATAAA
1 AAATTA-AAA
*
101698659 AATATTTAAA
1 AA-ATTAAAA
101698669 AAA-TAAAA
1 AAATTAAAA
101698677 AAATTCAAAA
1 AAATT-AAAA
*
101698687 AAA-T-ATA
1 AAATTAAAA
101698694 AAATATAAAA
1 AAAT-TAAAA
* * *
101698704 AAGTCATAA
1 AAATTAAAA
101698713 AAATTCAAAA
1 AAATT-AAAA
101698723 AAATTAAAA
1 AAATTAAAA
101698732 TACATATGAA
Statistics
Matches: 56, Mismatches: 10, Indels: 15
0.69 0.12 0.19
Matches are distributed among these distances:
7 5 0.09
8 7 0.12
9 14 0.25
10 27 0.48
11 3 0.05
ACGTcount: A:0.71, C:0.04, G:0.01, T:0.24
Consensus pattern (9 bp):
AAATTAAAA
Found at i:101698699 original size:36 final size:35
Alignment explanation
Indices: 101698665--101698733 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 35
101698655 TAAAAATATT
101698665 TAAAAAA-T-AAAAAAATTCAAAAAAATATAAAATA
1 TAAAAAAGTCAAAAAAATTCAAAAAAAT-TAAAATA
*
101698699 TAAAAAAGTCATAAAAATTCAAAAAAATTAAAATA
1 TAAAAAAGTCAAAAAAATTCAAAAAAATTAAAATA
101698734 CATATGAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
34 7 0.22
35 8 0.25
36 17 0.53
ACGTcount: A:0.72, C:0.04, G:0.01, T:0.22
Consensus pattern (35 bp):
TAAAAAAGTCAAAAAAATTCAAAAAAATTAAAATA
Found at i:101698722 original size:26 final size:25
Alignment explanation
Indices: 101698668--101698716 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
101698658 AAATATTTAA
*
101698668 AAAATAAAAAAATTCAAAAAAATAT
1 AAAATAAAAAAAGTCAAAAAAATAT
*
101698693 AAAATATAAAAAAGTCATAAAAAT
1 AAAATA-AAAAAAGTCAAAAAAAT
101698717 TCAAAAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 6 0.29
26 15 0.71
ACGTcount: A:0.73, C:0.04, G:0.02, T:0.20
Consensus pattern (25 bp):
AAAATAAAAAAAGTCAAAAAAATAT
Found at i:101698868 original size:24 final size:22
Alignment explanation
Indices: 101698825--101698871 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 22
101698815 ATTTTTTAAA
*
101698825 ATTTTAAAATTAAGTTAAATTT
1 ATTTTAAAATTAAGTGAAATTT
101698847 ATTTTAAAATTGAAAGTGAAATTT
1 ATTTTAAAATT--AAGTGAAATTT
101698871 A
1 A
101698872 ACTTAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 11 0.50
24 11 0.50
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.45
Consensus pattern (22 bp):
ATTTTAAAATTAAGTGAAATTT
Found at i:101698877 original size:24 final size:22
Alignment explanation
Indices: 101698828--101698879 Score: 59
Period size: 24 Copynumber: 2.3 Consensus size: 22
101698818 TTTTAAAATT
* **
101698828 TTAAAATTAAGTTAAATTTATT
1 TTAAAATTAAGTGAAATTTAAC
101698850 TTAAAATTGAAAGTGAAATTTAAC
1 TTAAAATT--AAGTGAAATTTAAC
101698874 TTAAAA
1 TTAAAA
101698880 AACACAAAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 8 0.32
24 17 0.68
ACGTcount: A:0.50, C:0.02, G:0.08, T:0.40
Consensus pattern (22 bp):
TTAAAATTAAGTGAAATTTAAC
Found at i:101701921 original size:8 final size:9
Alignment explanation
Indices: 101701906--101701933 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
101701896 ACTTTATATT
101701906 TTTAAAAAA
1 TTTAAAAAA
101701915 TTTAAAAAA
1 TTTAAAAAA
101701924 TTTAAAAAA
1 TTTAAAAAA
101701933 T
1 T
101701934 ATATAAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (9 bp):
TTTAAAAAA
Found at i:101707452 original size:17 final size:17
Alignment explanation
Indices: 101707414--101707483 Score: 63
Period size: 17 Copynumber: 4.1 Consensus size: 17
101707404 ATGTCATATC
*
101707414 AATAAATAAT-TTTAAAT
1 AATAAA-AATATTTAAAA
*
101707431 TATAAAAATATTTAAAA
1 AATAAAAATATTTAAAA
* *
101707448 AATAAAAAAATTCAAAA
1 AATAAAAATATTTAAAA
*
101707465 ATATAAAAA-ATATAAAA
1 A-ATAAAAATATTTAAAA
101707482 AA
1 AA
101707484 GTCATAAAAA
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
16 4 0.09
17 33 0.75
18 7 0.16
ACGTcount: A:0.70, C:0.01, G:0.00, T:0.29
Consensus pattern (17 bp):
AATAAAAATATTTAAAA
Found at i:101707464 original size:27 final size:28
Alignment explanation
Indices: 101707434--101707502 Score: 83
Period size: 27 Copynumber: 2.6 Consensus size: 28
101707424 TTTAAATTAT
*
101707434 AAAAATATTTAAAAAATA-AAAAAATTC
1 AAAAATATTTAAAAAATATAAAAAAGTC
101707461 AAAAATA--TAAAAAATATAAAAAAGTC
1 AAAAATATTTAAAAAATATAAAAAAGTC
*
101707487 ATAAAA-ATTCAAAAAA
1 A-AAAATATTTAAAAAA
101707503 ATTAAAATAC
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
25 9 0.25
26 10 0.28
27 11 0.31
28 6 0.17
ACGTcount: A:0.72, C:0.04, G:0.01, T:0.22
Consensus pattern (28 bp):
AAAAATATTTAAAAAATATAAAAAAGTC
Found at i:101707490 original size:11 final size:9
Alignment explanation
Indices: 101707431--101707493 Score: 67
Period size: 9 Copynumber: 6.9 Consensus size: 9
101707421 AATTTTAAAT
101707431 TATAAAAATA
1 TATAAAAA-A
*
101707441 TTTAAAAAA
1 TATAAAAAA
101707450 TA-AAAAAA
1 TATAAAAAA
*
101707458 T-TCAAAAA
1 TATAAAAAA
101707466 TATAAAAAA
1 TATAAAAAA
101707475 TATAAAAAA
1 TATAAAAAA
101707484 GTCATAAAAA
1 -T-ATAAAAA
101707494 TTCAAAAAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
8 13 0.29
9 17 0.38
10 8 0.18
11 7 0.16
ACGTcount: A:0.71, C:0.03, G:0.02, T:0.24
Consensus pattern (9 bp):
TATAAAAAA
Found at i:101707509 original size:8 final size:8
Alignment explanation
Indices: 101707442--101707509 Score: 55
Period size: 8 Copynumber: 7.8 Consensus size: 8
101707432 ATAAAAATAT
101707442 TTAAAAAA
1 TTAAAAAA
*
101707450 TAAAAAAA
1 TTAAAAAA
*
101707458 TTCAAAAA
1 TTAAAAAA
101707466 TATAAAAAA
1 T-TAAAAAA
101707475 TATAAAAAA
1 T-TAAAAAA
*
101707484 GTCATAAAAA
1 -TTA-AAAAA
101707494 TTCAAAAAAA
1 TT--AAAAAA
101707504 TTAAAA
1 TTAAAA
101707510 TACATATGAA
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
8 18 0.37
9 17 0.35
10 13 0.27
11 1 0.02
ACGTcount: A:0.72, C:0.04, G:0.01, T:0.22
Consensus pattern (8 bp):
TTAAAAAA
Found at i:101707509 original size:9 final size:9
Alignment explanation
Indices: 101707427--101707509 Score: 55
Period size: 10 Copynumber: 9.0 Consensus size: 9
101707417 AAATAATTTT
101707427 AAATTATAAA
1 AAATTA-AAA
*
101707437 AATATTTAAA
1 AA-ATTAAAA
101707447 AAA-TAAAA
1 AAATTAAAA
*
101707455 AAATT-CAA
1 AAATTAAAA
101707463 AAA-TATAAA
1 AAATTA-AAA
101707472 AAATATAAAA
1 AAAT-TAAAA
* * *
101707482 AAGTCATAA
1 AAATTAAAA
101707491 AAATTCAAAA
1 AAATT-AAAA
101707501 AAATTAAAA
1 AAATTAAAA
101707510 TACATATGAA
Statistics
Matches: 56, Mismatches: 10, Indels: 15
0.69 0.12 0.19
Matches are distributed among these distances:
7 1 0.02
8 12 0.21
9 17 0.30
10 21 0.38
11 5 0.09
ACGTcount: A:0.71, C:0.04, G:0.01, T:0.24
Consensus pattern (9 bp):
AAATTAAAA
Found at i:101707630 original size:22 final size:24
Alignment explanation
Indices: 101707602--101707648 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 24
101707592 TATTTTTAAA
*
101707602 ATTTTAAAATT-AAA-TTAAATTT
1 ATTTTAAAATTGAAAGTGAAATTT
*
101707624 ATTTTAAGATTGAAAGTGAAATTT
1 ATTTTAAAATTGAAAGTGAAATTT
101707648 A
1 A
101707649 ACTTAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 10 0.48
23 3 0.14
24 8 0.38
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.45
Consensus pattern (24 bp):
ATTTTAAAATTGAAAGTGAAATTT
Found at i:101709371 original size:19 final size:19
Alignment explanation
Indices: 101709336--101709414 Score: 108
Period size: 19 Copynumber: 4.2 Consensus size: 19
101709326 AGATTACAAG
101709336 ATCATATCCTCAAGATTGCAT
1 ATCATAT-CT-AAGATTGCAT
101709357 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
*
101709374 ATCATATCTAATATTGCAT
1 ATCATATCTAAGATTGCAT
*
101709393 ATCACATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
101709412 ATC
1 ATC
101709415 CTTAAAGATT
Statistics
Matches: 53, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
17 16 0.30
19 28 0.53
20 2 0.04
21 7 0.13
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:101709393 original size:36 final size:38
Alignment explanation
Indices: 101709336--101709408 Score: 114
Period size: 36 Copynumber: 2.0 Consensus size: 38
101709326 AGATTACAAG
*
101709336 ATCATATCCTCAAGATTGCATATCATATCTAAGATTGT
1 ATCATATCCTCAAGATTGCATATCACATCTAAGATTGT
*
101709374 ATCATAT-CT-AATATTGCATATCACATCTAAGATTG
1 ATCATATCCTCAAGATTGCATATCACATCTAAGATTG
101709409 CATATCCTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
36 24 0.73
37 2 0.06
38 7 0.21
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.37
Consensus pattern (38 bp):
ATCATATCCTCAAGATTGCATATCACATCTAAGATTGT
Found at i:101710416 original size:9 final size:9
Alignment explanation
Indices: 101710400--101710461 Score: 58
Period size: 9 Copynumber: 6.9 Consensus size: 9
101710390 AATTTTAAAT
101710400 TATAAAAATA
1 TATAAAAA-A
*
101710410 TTTAAAAAA
1 TATAAAAAA
101710419 TATAAAAAA
1 TATAAAAAA
*
101710428 T-TCAAAAA
1 TATAAAAAA
101710436 TAT--AAAA
1 TATAAAAAA
101710443 TATAAAAAA
1 TATAAAAAA
101710452 GTCATAAAAA
1 -T-ATAAAAA
101710462 TTCAAAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
7 7 0.16
8 7 0.16
9 15 0.34
10 8 0.18
11 7 0.16
ACGTcount: A:0.69, C:0.03, G:0.02, T:0.26
Consensus pattern (9 bp):
TATAAAAAA
Found at i:101710434 original size:17 final size:17
Alignment explanation
Indices: 101710400--101710476 Score: 70
Period size: 17 Copynumber: 4.4 Consensus size: 17
101710390 AATTTTAAAT
101710400 TATAAAAATATTTAAAAAA
1 TATAAAAA-A-TTAAAAAA
*
101710419 TATAAAAAATTCAAAAA
1 TATAAAAAATTAAAAAA
*
101710436 TATAAAATA-TAAAAAA
1 TATAAAAAATTAAAAAA
101710452 GTCAT-AAAAATTCAAAAAA
1 -T-ATAAAAAATT-AAAAAA
101710471 T-TAAAA
1 TATAAAA
101710477 TACATATGAA
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
16 7 0.14
17 23 0.47
18 5 0.10
19 14 0.29
ACGTcount: A:0.69, C:0.04, G:0.01, T:0.26
Consensus pattern (17 bp):
TATAAAAAATTAAAAAA
Found at i:101710469 original size:9 final size:8
Alignment explanation
Indices: 101710411--101710476 Score: 53
Period size: 9 Copynumber: 7.8 Consensus size: 8
101710401 ATAAAAATAT
101710411 TTAAAAAA
1 TTAAAAAA
101710419 TATAAAAAA
1 T-TAAAAAA
*
101710428 TTCAAAAA
1 TTAAAAAA
*
101710436 -TATAAAA
1 TTAAAAAA
101710443 TATAAAAAA
1 T-TAAAAAA
*
101710452 GTCATAAAAA
1 -TTA-AAAAA
101710462 TTCAAAAAA
1 TT-AAAAAA
101710471 TTAAAA
1 TTAAAA
101710477 TACATATGAA
Statistics
Matches: 46, Mismatches: 6, Indels: 12
0.72 0.09 0.19
Matches are distributed among these distances:
7 5 0.11
8 11 0.24
9 23 0.50
10 7 0.15
ACGTcount: A:0.70, C:0.05, G:0.02, T:0.24
Consensus pattern (8 bp):
TTAAAAAA
Found at i:101710598 original size:22 final size:24
Alignment explanation
Indices: 101710570--101710616 Score: 71
Period size: 22 Copynumber: 2.0 Consensus size: 24
101710560 ATTTTTTAAA
*
101710570 ATTTTAAAATT-AAA-TTAAATTT
1 ATTTTAAAATTGAAAGTGAAATTT
101710592 ATTTTAAAATTGAAAGTGAAATTT
1 ATTTTAAAATTGAAAGTGAAATTT
101710616 A
1 A
101710617 ACTTAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 11 0.50
23 3 0.14
24 8 0.36
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.45
Consensus pattern (24 bp):
ATTTTAAAATTGAAAGTGAAATTT
Found at i:101710622 original size:24 final size:22
Alignment explanation
Indices: 101710573--101710624 Score: 59
Period size: 24 Copynumber: 2.3 Consensus size: 22
101710563 TTTTAAAATT
* **
101710573 TTAAAATTAAATTAAATTTATT
1 TTAAAATTAAATGAAATTTAAC
101710595 TTAAAATTGAAAGTGAAATTTAAC
1 TTAAAATT-AAA-TGAAATTTAAC
101710619 TTAAAA
1 TTAAAA
101710625 AACACAACAC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 8 0.32
23 3 0.12
24 14 0.56
ACGTcount: A:0.52, C:0.02, G:0.06, T:0.40
Consensus pattern (22 bp):
TTAAAATTAAATGAAATTTAAC
Found at i:101712340 original size:19 final size:19
Alignment explanation
Indices: 101712305--101712383 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
101712295 AGATTACAAG
101712305 ATCATATCCTCAAGATTGCAT
1 ATCATAT-CT-AAGATTGCAT
101712326 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
*
101712343 ATCATATCTAATATTGCAT
1 ATCATATCTAAGATTGCAT
101712362 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
101712381 ATC
1 ATC
101712384 CTTAAAGATT
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
17 16 0.30
19 29 0.54
20 2 0.04
21 7 0.13
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:101712362 original size:36 final size:38
Alignment explanation
Indices: 101712305--101712377 Score: 123
Period size: 36 Copynumber: 2.0 Consensus size: 38
101712295 AGATTACAAG
101712305 ATCATATCCTCAAGATTGCATATCATATCTAAGATTGT
1 ATCATATCCTCAAGATTGCATATCATATCTAAGATTGT
*
101712343 ATCATAT-CT-AATATTGCATATCATATCTAAGATTG
1 ATCATATCCTCAAGATTGCATATCATATCTAAGATTG
101712378 CATATCCTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 25 0.74
37 2 0.06
38 7 0.21
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (38 bp):
ATCATATCCTCAAGATTGCATATCATATCTAAGATTGT
Found at i:101713389 original size:9 final size:9
Alignment explanation
Indices: 101713373--101713435 Score: 60
Period size: 9 Copynumber: 6.9 Consensus size: 9
101713363 AATTTTAAAT
101713373 TATAAAAATA
1 TATAAAAA-A
*
101713383 TTTAAAAAA
1 TATAAAAAA
101713392 TATAAAAAA
1 TATAAAAAA
101713401 T-TCAAAAAA
1 TAT-AAAAAA
101713410 TAT--AAAA
1 TATAAAAAA
101713417 TATAAAAAA
1 TATAAAAAA
101713426 GTCATAAAAA
1 -T-ATAAAAA
101713436 TTCAAAAAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
7 7 0.16
8 1 0.02
9 21 0.47
10 9 0.20
11 7 0.16
ACGTcount: A:0.70, C:0.03, G:0.02, T:0.25
Consensus pattern (9 bp):
TATAAAAAA
Found at i:101713398 original size:18 final size:18
Alignment explanation
Indices: 101713377--101713452 Score: 88
Period size: 18 Copynumber: 4.3 Consensus size: 18
101713367 TTAAATTATA
*
101713377 AAAATATTTAAAAAATAT
1 AAAATATTCAAAAAATAT
*
101713395 AAAAAATTCAAAAAATAT
1 AAAATATTCAAAAAATAT
101713413 AAAATA-T-AAAAAAGTCAT
1 AAAATATTCAAAAAA-T-AT
101713431 AAAA-ATTCAAAAAAT-T
1 AAAATATTCAAAAAATAT
101713447 AAAATA
1 AAAATA
101713453 CATATGAATT
Statistics
Matches: 50, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
16 11 0.22
17 4 0.08
18 29 0.58
19 6 0.12
ACGTcount: A:0.70, C:0.04, G:0.01, T:0.25
Consensus pattern (18 bp):
AAAATATTCAAAAAATAT
Found at i:101713421 original size:25 final size:26
Alignment explanation
Indices: 101713388--101713436 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
101713378 AAATATTTAA
*
101713388 AAAATATAAAAAATTCA-AAAAATAT
1 AAAATATAAAAAAGTCATAAAAATAT
101713413 AAAATATAAAAAAGTCATAAAAAT
1 AAAATATAAAAAAGTCATAAAAAT
101713437 TCAAAAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.71, C:0.04, G:0.02, T:0.22
Consensus pattern (26 bp):
AAAATATAAAAAAGTCATAAAAATAT
Found at i:101713443 original size:9 final size:8
Alignment explanation
Indices: 101713384--101713450 Score: 55
Period size: 9 Copynumber: 7.8 Consensus size: 8
101713374 ATAAAAATAT
101713384 TTAAAAAA
1 TTAAAAAA
101713392 TATAAAAAA
1 T-TAAAAAA
101713401 TTCAAAAAA
1 TT-AAAAAA
*
101713410 -TATAAAA
1 TTAAAAAA
101713417 TATAAAAAA
1 T-TAAAAAA
*
101713426 GTCATAAAAA
1 -TTA-AAAAA
101713436 TTCAAAAAA
1 TT-AAAAAA
101713445 TTAAAA
1 TTAAAA
101713451 TACATATGAA
Statistics
Matches: 48, Mismatches: 4, Indels: 14
0.73 0.06 0.21
Matches are distributed among these distances:
7 5 0.10
8 7 0.15
9 29 0.60
10 7 0.15
ACGTcount: A:0.70, C:0.04, G:0.01, T:0.24
Consensus pattern (8 bp):
TTAAAAAA
Found at i:101715304 original size:19 final size:19
Alignment explanation
Indices: 101715269--101715347 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
101715259 AGATTACAAG
101715269 ATCATATCCTCAAGATTGCAT
1 ATCATAT-CT-AAGATTGCAT
101715290 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
*
101715307 ATCATATCTAATATTGCAT
1 ATCATATCTAAGATTGCAT
101715326 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
101715345 ATC
1 ATC
101715348 CTTAAAGATT
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
17 16 0.30
19 29 0.54
20 2 0.04
21 7 0.13
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:101715326 original size:36 final size:38
Alignment explanation
Indices: 101715269--101715341 Score: 123
Period size: 36 Copynumber: 2.0 Consensus size: 38
101715259 AGATTACAAG
101715269 ATCATATCCTCAAGATTGCATATCATATCTAAGATTGT
1 ATCATATCCTCAAGATTGCATATCATATCTAAGATTGT
*
101715307 ATCATAT-CT-AATATTGCATATCATATCTAAGATTG
1 ATCATATCCTCAAGATTGCATATCATATCTAAGATTG
101715342 CATATCCTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 25 0.74
37 2 0.06
38 7 0.21
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (38 bp):
ATCATATCCTCAAGATTGCATATCATATCTAAGATTGT
Found at i:101716195 original size:84 final size:84
Alignment explanation
Indices: 101716089--101716867 Score: 1207
Period size: 84 Copynumber: 9.3 Consensus size: 84
101716079 ATCATCTTGG
* * * * * *
101716089 ACCCTACTGCTTAGGGGGTTAAGGTGCATCATCTTTGATCTGCTTCGCTACTGCTTA-GG-GATA
1 ACCCTACTGCTTAGGGGATTAAGGCG-A--GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATA
* *
101716152 AGATCTACAAATTTAACCTCTT
63 AGATCTGCAAATTTAACCTGTT
* *
101716174 ACCCTACT-CTTAGGGGATTAAGGTGGGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
101716238 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* * *
101716257 ACCCTACTTCTTAGGGGATTAAGGCGAGTCGTCGTCGATCTGCTCCGCTACTACTTAGGGAGATA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCTCCACTACTGCTTAGGGAGATA
**
101716322 AGATCT----A-CGAACCTGTT
63 AGATCTGCAAATTTAACCTGTT
*
101716339 ACCCTACTGCTTAGGGGATTAAGGCGATTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
101716404 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
*
101716423 ACCCTACCGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
101716488 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* *
101716507 ACCCTACTGCTTAGGGAATTAAGGCGAGTCTTCGATATGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
*
101716572 TCTACAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
*
101716591 ACCCTACTGCTTAGGGGATTAAGGCTG-GTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAG
1 ACCCTACTGCTTAGGGGATTAAGGC-GAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAG
101716655 ATCTGCAAATTTAACCTGTT
65 ATCTGCAAATTTAACCTGTT
101716675 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
101716740 TCTGCAAATTTAACCTGTT
66 TCTGCAAATTTAACCTGTT
* * *
101716759 ACCCTACTGCTTAGAGGATTAAGGCGAGTCTTCGATCTGCCCCACTACTGCTTAAGGAGATAAGA
1 ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
*
101716824 TCTGCAAATTTAACTTGTT
66 TCTGCAAATTTAACCTGTT
101716843 ACCCTACTGCTTAGGGGATTAAGGC
1 ACCCTACTGCTTAGGGGATTAAGGC
101716868 ACTGAATTTT
Statistics
Matches: 645, Mismatches: 36, Indels: 27
0.91 0.05 0.04
Matches are distributed among these distances:
79 35 0.05
81 24 0.04
82 38 0.06
83 35 0.05
84 468 0.73
85 10 0.02
87 35 0.05
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (84 bp):
ACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
TCTGCAAATTTAACCTGTT
Found at i:101717830 original size:7 final size:7
Alignment explanation
Indices: 101717818--101717867 Score: 50
Period size: 7 Copynumber: 6.9 Consensus size: 7
101717808 CCTCTCCATT
101717818 TTTTTTC
1 TTTTTTC
101717825 TTTTTTC
1 TTTTTTC
101717832 TTTTTT-
1 TTTTTTC
101717838 TTCTCTTT-
1 TT-T-TTTC
101717846 TTCTTTTC
1 TT-TTTTC
101717854 TTTTTTCC
1 TTTTTT-C
101717862 TTTTTT
1 TTTTTT
101717868 TGAAATAGAA
Statistics
Matches: 39, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
6 2 0.05
7 21 0.54
8 16 0.41
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTTTTC
Found at i:101717838 original size:17 final size:17
Alignment explanation
Indices: 101717816--101717857 Score: 68
Period size: 16 Copynumber: 2.5 Consensus size: 17
101717806 GGCCTCTCCA
101717816 TTTTTTTTCT-TTTTTC
1 TTTTTTTTCTCTTTTTC
101717832 TTTTTTTTCTCTTTTTC
1 TTTTTTTTCTCTTTTTC
101717849 TTTTCTTTT
1 TTTT-TTTT
101717858 TTCCTTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 10 0.42
17 10 0.42
18 4 0.17
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (17 bp):
TTTTTTTTCTCTTTTTC
Found at i:101717839 original size:11 final size:11
Alignment explanation
Indices: 101717816--101717859 Score: 54
Period size: 11 Copynumber: 4.1 Consensus size: 11
101717806 GGCCTCTCCA
*
101717816 TTTTT-TTTCT
1 TTTTTCTTTTT
101717826 TTTTTCTTTTT
1 TTTTTCTTTTT
*
101717837 TTTCTCTTTTT
1 TTTTTCTTTTT
*
101717848 CTTTTCTTTTT
1 TTTTTCTTTTT
101717859 T
1 T
101717860 CCTTTTTTTG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
10 5 0.18
11 23 0.82
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (11 bp):
TTTTTCTTTTT
Found at i:101717842 original size:29 final size:29
Alignment explanation
Indices: 101717814--101717868 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
101717804 TTGGCCTCTC
*
101717814 CATTTT-TTTTCTTTTTTCTTTTTTTTCT
1 CATTTTCTTTTCTTTTTTCCTTTTTTTCT
*
101717842 CTTTTTCTTTTCTTTTTTCCTTTTTTT
1 CATTTTCTTTTCTTTTTTCCTTTTTTT
101717869 GAAATAGAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.21
29 19 0.79
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (29 bp):
CATTTTCTTTTCTTTTTTCCTTTTTTTCT
Done.